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0 Process all phenotypes in founder CC and DO

1 Data transformation from Finalreport.txt to qtl2 for 12 batches

2 Grab intensities from GeneSeek FinalReport.txt files

3 First time to calculate genoprobs, maxmarg, crossover, errorlod, snpg for the qc diagnositics

4 Genotype diagnostics for diversity outbred mice of 12 batches

5 After QC, genotype diagnostics

6 Calculation of the genoprobs after qc and do interpolatino to 69K grid

7 DO Diversity Report

8 GCTA heritability

Reverse learning project