Uses of Class
org.monarchinitiative.lirical.core.analysis.TestResult

Packages that use TestResult

Package	Description
org.monarchinitiative.lirical.core.analysis	A high-level representation of LIRICAL analysis.
org.monarchinitiative.lirical.io.output	Classes for writing out LIRICAL analysis results into HTML, TSV, and JSON files.
org.monarchinitiative.lirical.io.output.svg	Classes to create an SVG graphic representing the result of likelihood raio analysis of one HPO Case.

Uses of TestResult in org.monarchinitiative.lirical.core.analysis

Methods in org.monarchinitiative.lirical.core.analysis that return TestResult

Modifier and Type	Method	Description
static TestResult	TestResult.of(org.monarchinitiative.phenol.ontology.data.TermId diseaseId, double pretestProbability, List<LrWithExplanation> observedResults, List<LrWithExplanation> excludedResults, GenotypeLrWithExplanation genotypeLr)

Methods in org.monarchinitiative.lirical.core.analysis that return types with arguments of type TestResult

Modifier and Type	Method	Description
Optional<TestResult>	AnalysisResults.resultByDiseaseId(org.monarchinitiative.phenol.ontology.data.TermId diseaseId)
default Stream<TestResult>	AnalysisResults.results()
default Stream<TestResult>	AnalysisResults.resultsWithDescendingPostTestProbability()

Methods in org.monarchinitiative.lirical.core.analysis with parameters of type TestResult

Modifier and Type	Method	Description
int	TestResult.compareTo(TestResult other)	Compare two TestResult objects based on their compositeLR value.

Method parameters in org.monarchinitiative.lirical.core.analysis with type arguments of type TestResult

Modifier and Type	Method	Description
static AnalysisResults	AnalysisResults.of(List<TestResult> results)

Uses of TestResult in org.monarchinitiative.lirical.io.output

Constructors in org.monarchinitiative.lirical.io.output with parameters of type TestResult

Modifier	Constructor	Description
	TsvDifferential(String sampleId, org.monarchinitiative.phenol.ontology.data.TermId diseaseId, String diseaseName, TestResult result, int rank, List<VisualizableVariant> variants)

Uses of TestResult in org.monarchinitiative.lirical.io.output.svg

Methods in org.monarchinitiative.lirical.io.output.svg with parameters of type TestResult

Modifier and Type	Method	Description
String	Sparkline2Svg.getSparklineSvg(String gsymbol, TestResult result)
String	Sparkline2Svg.getSparklineSvg(TestResult result)	This is used by Phenotype only output.

Constructors in org.monarchinitiative.lirical.io.output.svg with parameters of type TestResult

Modifier	Constructor	Description
	Lr2Svg(TestResult result, int rank, org.monarchinitiative.phenol.ontology.data.TermId diseaseId, String originalDiseaseName, org.monarchinitiative.phenol.ontology.data.MinimalOntology hpo, String symbol)	Constructor to draw an SVG representation of the phenotype and genotype likelihood ratios
	Sparkline2Svg(TestResult result, boolean useGenotype, org.monarchinitiative.phenol.ontology.data.MinimalOntology ontology)	Set up the Sparkline2Svg generator by sorting the HPO terms according to their likelihood ratios in the top diagnosis (diseaseId).