Uses of Class
org.monarchinitiative.lirical.core.likelihoodratio.InducedDiseaseGraph

Packages that use InducedDiseaseGraph

Package	Description
org.monarchinitiative.lirical.core.likelihoodratio	Package with logic for calculation of likelihood ratios for phenotypic or genotypic test results.

Uses of InducedDiseaseGraph in org.monarchinitiative.lirical.core.likelihoodratio

Methods in org.monarchinitiative.lirical.core.likelihoodratio that return InducedDiseaseGraph

Modifier and Type	Method	Description
static InducedDiseaseGraph	InducedDiseaseGraph.create(org.monarchinitiative.phenol.annotations.formats.hpo.HpoDisease disease, org.monarchinitiative.phenol.ontology.data.MinimalOntology ontology)

Methods in org.monarchinitiative.lirical.core.likelihoodratio with parameters of type InducedDiseaseGraph

Modifier and Type	Method	Description
LrWithExplanation	PhenotypeLikelihoodRatio.lrForExcludedTerm(org.monarchinitiative.phenol.ontology.data.TermId queryTid, InducedDiseaseGraph idg)	Calculate and return the likelihood ratio of an EXCLUDED HPO feature tid in an individual with the disease "diseaseId"
LrWithExplanation	PhenotypeLikelihoodRatio.lrForObservedTerm(org.monarchinitiative.phenol.ontology.data.TermId queryTid, InducedDiseaseGraph idg)	Calculate and return the likelihood ratio of observing the HPO feature queryTid in an individual with the disease idg (note that the InducedDiseaseGraph contains information about the annotations of the disease that we use to calculate the likelihood ratios).