Uses of Interface
org.monarchinitiative.lirical.core.model.TranscriptAnnotation

Packages that use TranscriptAnnotation

Package	Description
org.monarchinitiative.lirical.core.model	Package with data models.
org.monarchinitiative.lirical.core.service	Package with services used across LIRICAL.
org.monarchinitiative.lirical.io.output	Classes for writing out LIRICAL analysis results into HTML, TSV, and JSON files.
org.monarchinitiative.lirical.io.service

Uses of TranscriptAnnotation in org.monarchinitiative.lirical.core.model

Methods in org.monarchinitiative.lirical.core.model that return types with arguments of type TranscriptAnnotation

Modifier and Type	Method	Description
List<TranscriptAnnotation>	FunctionalAnnotationAware.annotations()

Method parameters in org.monarchinitiative.lirical.core.model with type arguments of type TranscriptAnnotation

Modifier and Type	Method	Description
static LiricalVariant	LiricalVariant.of(GenotypedVariant variant, List<TranscriptAnnotation> annotations, VariantMetadata metadata)

Uses of TranscriptAnnotation in org.monarchinitiative.lirical.core.service

Methods in org.monarchinitiative.lirical.core.service that return types with arguments of type TranscriptAnnotation

Modifier and Type	Method	Description
List<TranscriptAnnotation>	FunctionalVariantAnnotator.annotate(org.monarchinitiative.svart.GenomicVariant variant)

Uses of TranscriptAnnotation in org.monarchinitiative.lirical.io.output

Methods in org.monarchinitiative.lirical.io.output that return types with arguments of type TranscriptAnnotation

Modifier and Type	Method	Description
List<TranscriptAnnotation>	VisualizableVariant.getAnnotationList()

Uses of TranscriptAnnotation in org.monarchinitiative.lirical.io.service

Methods in org.monarchinitiative.lirical.io.service that return types with arguments of type TranscriptAnnotation

Modifier and Type	Method	Description
List<TranscriptAnnotation>	JannovarFunctionalVariantAnnotator.annotate(org.monarchinitiative.svart.GenomicVariant variant)