SanitizedInputs (LIRICAL 2.0.2 API)

java.lang.Object

org.monarchinitiative.lirical.core.sanitize.SanitizedInputs

public final class SanitizedInputs extends Object

Result of input sanitation.

The HPO terms are guaranteed to be valid HPO CURIEs, age and sex are either well-formed or null, and VCF points to a readable file.

Author:: Daniel Danis

Method Summary

Modifier and Type

Method

Description

Age

age()

List<org.monarchinitiative.phenol.ontology.data.TermId>

excludedHpoTerms()

List<org.monarchinitiative.phenol.ontology.data.TermId>

presentHpoTerms()

String

sampleId()

Sex

sex()

String

toString()

Path

vcf()

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Details
- sampleId
  
  public String sampleId()
- presentHpoTerms
  
  public List<org.monarchinitiative.phenol.ontology.data.TermId> presentHpoTerms()
- excludedHpoTerms
  
  public List<org.monarchinitiative.phenol.ontology.data.TermId> excludedHpoTerms()
- age
  
  public Age age()
- sex
  
  public Sex sex()
- vcf
  
  public Path vcf()
- toString
  
  public String toString()
  
  Overrides:
  
  toString in class Object