Package org.monarchinitiative.lirical.io.output

Class ImprobableDifferential

java.lang.Object

org.monarchinitiative.lirical.io.output.ImprobableDifferential

public class ImprobableDifferential
extends Object

This class arranges data for genes that do not have a probable differential diagnosis. The FreeMarker template will show all of them as a table.

Author:

Peter Robinson

Constructor Summary

Constructors

Constructor	Description
ImprobableDifferential(String name, String id, String gene, double ptprob, int count)	Construct a data opbject for display in FreeMarker template (which requires a public constructor)

Method Summary

Modifier and Type	Method	Description
String	getDiseaseId()
String	getDiseaseName()
String	getGeneName()
String	getPosttestProbability()
int	getVarcount()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ImprobableDifferential

public ImprobableDifferential(String name,
 String id,
 String gene,
 double ptprob,
 int count)

Construct a data opbject for display in FreeMarker template (which requires a public constructor)

Parameters:

name - Name of the disease

id - database id of the disease

gene - affected gene

ptprob - posterior probability

count - number of variants in gene

Method Details

getDiseaseName

public String getDiseaseName()

getDiseaseId

public String getDiseaseId()

getGeneName

public String getGeneName()

getPosttestProbability

public String getPosttestProbability()

getVarcount

public int getVarcount()