Last updated: 2023-04-17
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Knit directory: Serreze-T1D_Workflow/
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Untracked: data/mean.differences_age.of.onset_pbs-myo-yes.vs.pbs-myo-no_sample.genos_marker.freq_low.geno.freq.removed_7.batches_myo_mis.csv
Untracked: data/mean.differences_age.of.onset_pbs-myo-yes.vs.pbs-myo-no_sample.genos_marker.freq_low.geno.freq.removed_sample.outliers.removed_7.batches_myo.csv
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Unstaged changes:
Modified: analysis/index.Rmd
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were
made to the R Markdown (analysis/index.Rmd) and HTML
(docs/index.html) files. If you’ve configured a remote Git
repository (see ?wflow_git_remote), click on the hyperlinks
in the table below to view the files as they were in that past version.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 51e3845 | Belinda Cornes | 2023-04-13 | Start workflowr project. |
| html | 4dd59b7 | Belinda Cornes | 2023-01-25 | myocarditis html files |
| Rmd | 1da01c0 | Belinda Cornes | 2023-01-09 | Start workflowr project. |
| Rmd | b385379 | Belinda Cornes | 2023-01-08 | Start workflowr project. |
| html | 409c35e | Belinda Cornes | 2022-04-10 | analysis for 5 batches htmls + figures |
| Rmd | 2d6f369 | Belinda Cornes | 2022-04-05 | Start workflowr project. |
| Rmd | d43c91c | Belinda Cornes | 2022-03-31 | Start workflowr project. |
| Rmd | bc33efa | Belinda Cornes | 2022-03-29 | Start workflowr project. |
| html | a4d66b5 | Belinda Cornes | 2022-03-15 | Build site. |
| Rmd | 93afca9 | Belinda Cornes | 2022-03-15 | updated binary qtl |
| html | c9102b8 | Belinda Cornes | 2022-03-09 | Build site. |
| Rmd | 46d3df1 | Belinda Cornes | 2022-03-09 | no xcovar or kinship |
| Rmd | ce47ff8 | Belinda Cornes | 2022-03-09 | Start workflowr project. |
| Rmd | 2d3ed78 | Belinda Cornes | 2022-02-25 | removing disproportionate markers |
| html | 2d3ed78 | Belinda Cornes | 2022-02-25 | removing disproportionate markers |
| html | 76519c3 | Belinda Cornes | 2022-02-23 | Build site. |
| Rmd | 11af5da | Belinda Cornes | 2022-02-23 | updating index |
| html | b41bf38 | Belinda Cornes | 2022-02-23 | Build site. |
| Rmd | a6d6f05 | Belinda Cornes | 2022-02-23 | updating index |
| html | e1e81a8 | Belinda Cornes | 2022-02-23 | Build site. |
| Rmd | c62f852 | Belinda Cornes | 2022-02-23 | updating geno freq calculation and correcting phenotypes |
| Rmd | 80fa7b1 | Belinda Cornes | 2022-02-23 | Start workflowr project. |
| html | 982969f | Belinda Cornes | 2022-02-11 | Build site. |
| Rmd | fc17722 | Belinda Cornes | 2022-02-11 | QTL Mapping correcting MAF cutoff |
| html | 14f643a | Belinda Cornes | 2022-02-11 | Build site. |
| Rmd | 676cb2e | Belinda Cornes | 2022-02-11 | updating index |
| html | d3accce | Belinda Cornes | 2022-02-11 | Build site. |
| Rmd | e325cf0 | Belinda Cornes | 2022-02-11 | updating index |
| html | 1218e08 | Belinda Cornes | 2022-02-11 | Build site. |
| Rmd | 8427b21 | Belinda Cornes | 2022-02-11 | QTL Mapping after snp qc |
| html | 7b05d41 | Belinda Cornes | 2022-02-10 | Build site. |
| Rmd | d199bd4 | Belinda Cornes | 2022-02-10 | QC analysis |
| Rmd | 131508a | Belinda Cornes | 2022-02-10 | Start workflowr project. |
Mapping and identifying genes uniquely contributing to immune check point inhibitor (ICI) induced autoimmunity complications
R version 4.2.2 (2022-10-31)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur ... 10.16
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] ggrepel_0.9.2 qtlcharts_0.16 qtl2_0.30 broman_0.80
[5] ggplot2_3.4.0 tibble_3.1.8 readxl_1.4.1 cluster_2.1.4
[9] dplyr_1.0.10 optparse_1.7.3 mclust_6.0.0 tidyr_1.2.1
[13] data.table_1.14.6 knitr_1.42 kableExtra_1.3.4 workflowr_1.7.0
loaded via a namespace (and not attached):
[1] Rcpp_1.0.9 svglite_2.1.0 getPass_0.2-2 ps_1.7.2
[5] assertthat_0.2.1 rprojroot_2.0.3 digest_0.6.31 utf8_1.2.2
[9] R6_2.5.1 cellranger_1.1.0 RSQLite_2.2.19 evaluate_0.20
[13] httr_1.4.4 pillar_1.8.1 rlang_1.1.0 rstudioapi_0.14
[17] blob_1.2.3 whisker_0.4.1 callr_3.7.3 jquerylib_0.1.4
[21] rmarkdown_2.21.2 qtl_1.54 webshot_0.5.4 stringr_1.5.0
[25] bit_4.0.5 munsell_0.5.0 compiler_4.2.2 httpuv_1.6.6
[29] xfun_0.38 pkgconfig_2.0.3 systemfonts_1.0.4 htmltools_0.5.5
[33] tidyselect_1.2.0 fansi_1.0.3 viridisLite_0.4.1 withr_2.5.0
[37] later_1.3.0 grid_4.2.2 jsonlite_1.8.4 gtable_0.3.1
[41] lifecycle_1.0.3 DBI_1.1.3 git2r_0.30.1 magrittr_2.0.3
[45] scales_1.2.1 cli_3.6.1 stringi_1.7.12 cachem_1.0.7
[49] fs_1.6.1 promises_1.2.0.1 getopt_1.20.3 xml2_1.3.3
[53] bslib_0.4.2 generics_0.1.3 vctrs_0.6.1 tools_4.2.2
[57] bit64_4.0.5 glue_1.6.2 purrr_0.3.5 parallel_4.2.2
[61] processx_3.8.0 fastmap_1.1.1 yaml_2.3.7 colorspace_2.0-3
[65] rvest_1.0.3 memoise_2.0.1 sass_0.4.5