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| Neogen_Sample_ID | Missing | AA | AC | AG | AT | CC | CG | GC | GG | TA | TC | TG | TT | Total_Genotyped | Percent_Genotyped | MURGIGV01_SNP.Count | cr |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| D497-PBS-Myo | 5486 | 30861 | 1252 | 5141 | 5 | 31619 | 4 | 2 | 31990 | 2 | 5189 | 1206 | 30502 | 137773 | 96.17% | 143259 | 0.961705721804564 |
| D645-ICI-Myo | 5442 | 29279 | 1857 | 7613 | 6 | 30186 | 3 | 6 | 30517 | 5 | 7511 | 1749 | 29085 | 137817 | 96.20% | 143259 | 0.962012857830922 |
| D764-ICI-Myo | 5790 | 29334 | 1729 | 7291 | 5 | 30488 | 10 | 7 | 30709 | 3 | 6970 | 1640 | 29283 | 137469 | 95.96% | 143259 | 0.959583691077 |
| D1090-ICI-Myo | 6123 | 30718 | 1208 | 4805 | 9 | 31811 | 7 | 5 | 32160 | 2 | 4754 | 1139 | 30518 | 137136 | 95.73% | 143259 | 0.95725922978661 |
| D1656-ICI-Myo | 5412 | 29728 | 1769 | 6948 | 8 | 30538 | 9 | 7 | 30795 | 1 | 6953 | 1655 | 29436 | 137847 | 96.22% | 143259 | 0.962222268757984 |
| 7185-PBS-EOI | 5503 | 30115 | 1453 | 6116 | 6 | 31220 | 4 | 3 | 31472 | 2 | 5844 | 1421 | 30100 | 137756 | 96.16% | 143259 | 0.961587055612562 |
| 7787-ICI-EOI | 5420 | 28674 | 2092 | 8574 | 5 | 29595 | 4 | 2 | 29915 | 4 | 8509 | 1969 | 28496 | 137839 | 96.22% | 143259 | 0.962166425844101 |
| 8623-PBS-EOI | 5352 | 28951 | 2023 | 8089 | 9 | 29880 | 9 | 4 | 30198 | 4 | 7922 | 1944 | 28874 | 137907 | 96.26% | 143259 | 0.962641090612108 |
| D501-ICI-Myo | 5295 | 29451 | 1781 | 7266 | 9 | 30507 | 6 | 6 | 30798 | 4 | 7098 | 1752 | 29286 | 137964 | 96.30% | 143259 | 0.963038971373526 |
| D647-PBS-EOI | 5665 | 30143 | 1432 | 6133 | 8 | 31168 | 1 | 7 | 31342 | 1 | 5945 | 1435 | 29979 | 137594 | 96.05% | 143259 | 0.960456236606426 |
| D772-PBS-Myo | 5575 | 30693 | 1305 | 5173 | 4 | 31725 | 3 | 1 | 32009 | 2 | 5021 | 1229 | 30519 | 137684 | 96.11% | 143259 | 0.961084469387613 |
| D1100-PBS-Myo | 5728 | 29010 | 1867 | 7645 | 7 | 30209 | 2 | 7 | 30570 | 3 | 7553 | 1786 | 28872 | 137531 | 96.00% | 143259 | 0.960016473659596 |
| D1729-PBS-Myo | 5397 | 31366 | 1044 | 4285 | 2 | 32257 | 2 | 5 | 32541 | 4 | 4279 | 1003 | 31074 | 137862 | 96.23% | 143259 | 0.962326974221515 |
| 7277-PBS-EOI | 5227 | 29559 | 1767 | 7149 | 3 | 30479 | 3 | 4 | 30845 | 3 | 7160 | 1779 | 29281 | 138032 | 96.35% | 143259 | 0.963513636141534 |
| 7796-PBS-EOI | 5404 | 29693 | 1686 | 6974 | 10 | 30662 | 11 | 5 | 30879 | 4 | 6872 | 1666 | 29393 | 137855 | 96.23% | 143259 | 0.962278111671867 |
| 8625-PBS-EOI | 5359 | 30212 | 1550 | 6097 | 4 | 31112 | 4 | 5 | 31422 | 3 | 5907 | 1468 | 30116 | 137900 | 96.26% | 143259 | 0.96259222806246 |
| D533-ICI-Myo | 5252 | 28429 | 2210 | 8953 | 11 | 29428 | 9 | 7 | 29740 | 4 | 8814 | 2160 | 28242 | 138007 | 96.33% | 143259 | 0.963339127035649 |
| D652-PBS-Myo | 5300 | 30424 | 1373 | 5821 | 7 | 31395 | 5 | 3 | 31699 | 5 | 5628 | 1296 | 30303 | 137959 | 96.30% | 143259 | 0.963004069552349 |
| D789-ICI-Myo | 5978 | 28118 | 2129 | 8916 | 8 | 29524 | 4 | 3 | 29716 | 3 | 8737 | 2136 | 27987 | 137281 | 95.83% | 143259 | 0.958271382600744 |
| D1168-PBS-SICK | 5528 | 30654 | 1188 | 5157 | 8 | 31867 | 7 | 4 | 32134 | 1 | 4953 | 1222 | 30536 | 137731 | 96.14% | 143259 | 0.961412546506677 |
| D133-PBS-EOI | 5233 | 29856 | 1655 | 6774 | 9 | 30810 | 9 | 5 | 31074 | 2 | 6654 | 1581 | 29597 | 138026 | 96.35% | 143259 | 0.963471753956121 |
| 7278-PBS-EOI | 5260 | 30258 | 1518 | 6187 | 9 | 31173 | 9 | 4 | 31349 | 0 | 6129 | 1449 | 29914 | 137999 | 96.33% | 143259 | 0.963283284121765 |
| 7800-PBS-EOI | 5327 | 30226 | 1515 | 6047 | 10 | 31189 | 9 | 6 | 31526 | 2 | 5822 | 1404 | 30176 | 137932 | 96.28% | 143259 | 0.962815599717993 |
| D249-PBS-EOI | 5296 | 29084 | 1930 | 7939 | 9 | 30073 | 12 | 4 | 30331 | 3 | 7777 | 1865 | 28936 | 137963 | 96.30% | 143259 | 0.963031991009291 |
| D249-PBS-EOI | 5296 | 29084 | 1930 | 7939 | 9 | 30073 | 12 | 4 | 30331 | 3 | 7777 | 1865 | 28936 | 137963 | 96.30% | 143259 | 0.963255362664824 |
| D249-PBS-EOI | 5296 | 29084 | 1930 | 7939 | 9 | 30073 | 12 | 4 | 30331 | 3 | 7777 | 1865 | 28936 | 137963 | 96.30% | 143259 | 0.963255362664824 |
| D249-PBS-EOI | 5296 | 29084 | 1930 | 7939 | 9 | 30073 | 12 | 4 | 30331 | 3 | 7777 | 1865 | 28936 | 137963 | 96.30% | 143259 | 0.963031991009291 |
| D561-ICI-Myo | 5355 | 29462 | 1801 | 7336 | 8 | 30281 | 4 | 7 | 30670 | 1 | 7235 | 1753 | 29346 | 137904 | 96.26% | 143259 | 0.962620149519402 |
| D665-PBS-Myo | 5361 | 30548 | 1373 | 5486 | 6 | 31501 | 5 | 0 | 31867 | 0 | 5518 | 1332 | 30262 | 137898 | 96.26% | 143259 | 0.962578267333989 |
| D827-ICI-EOI | 5363 | 29838 | 1608 | 6452 | 7 | 30944 | 8 | 2 | 31342 | 2 | 6426 | 1546 | 29721 | 137896 | 96.26% | 143259 | 0.962564306605519 |
| D1224-ICI-Myo | 5546 | 28936 | 1965 | 7899 | 7 | 30082 | 8 | 7 | 30376 | 4 | 7735 | 1835 | 28859 | 137713 | 96.13% | 143259 | 0.961286899950439 |
| 6197-PBS-EOI | 5265 | 30056 | 1529 | 6370 | 6 | 31067 | 8 | 4 | 31340 | 4 | 6213 | 1516 | 29881 | 137994 | 96.32% | 143259 | 0.963248382300588 |
| 7328-PBS-EOI | 5216 | 29601 | 1676 | 7065 | 8 | 30667 | 8 | 5 | 30963 | 3 | 6923 | 1652 | 29472 | 138043 | 96.36% | 143259 | 0.963590420148123 |
| 7801-PBS-EOI | 5306 | 28349 | 2193 | 9049 | 11 | 29385 | 10 | 8 | 29698 | 5 | 8913 | 2118 | 28214 | 137953 | 96.30% | 143259 | 0.962962187366937 |
| 8609-PBS-EOI | 5367 | 30396 | 1442 | 5879 | 4 | 31259 | 8 | 6 | 31562 | 2 | 5720 | 1387 | 30227 | 137892 | 96.25% | 143259 | 0.962536385148577 |
| D564-ICI-Myo | 5362 | 30698 | 1281 | 5257 | 9 | 31682 | 5 | 4 | 32018 | 1 | 5166 | 1288 | 30488 | 137897 | 96.26% | 143259 | 0.962571286969754 |
| D683-ICI-Myo | 5283 | 28949 | 1987 | 8104 | 9 | 29902 | 8 | 10 | 30298 | 6 | 7915 | 1899 | 28889 | 137976 | 96.31% | 143259 | 0.963122735744351 |
| D828-ICI-Myo | 5391 | 30412 | 1450 | 5605 | 5 | 31470 | 5 | 4 | 31819 | 3 | 5466 | 1322 | 30307 | 137868 | 96.24% | 143259 | 0.962368856406927 |
| D1244-PBS-Myo | 5462 | 28205 | 2225 | 9078 | 11 | 29429 | 9 | 8 | 29731 | 3 | 8870 | 2135 | 28093 | 137797 | 96.19% | 143259 | 0.961873250546214 |
| 6200-PBS-SICK | 5188 | 29624 | 1723 | 7137 | 7 | 30603 | 6 | 6 | 30876 | 4 | 7010 | 1681 | 29394 | 138071 | 96.38% | 143259 | 0.963785870346715 |
| 7334-PBS-EOI | 5190 | 29006 | 2025 | 8133 | 6 | 29881 | 4 | 6 | 30212 | 2 | 8162 | 1980 | 28652 | 138069 | 96.38% | 143259 | 0.963771909618244 |
| 7907-PBS-EOI | 5294 | 29823 | 1702 | 6832 | 5 | 30697 | 5 | 6 | 30967 | 3 | 6763 | 1648 | 29514 | 137965 | 96.30% | 143259 | 0.963045951737762 |
| 8610-PBS-EOI | 5358 | 30086 | 1556 | 6428 | 7 | 30953 | 4 | 6 | 31228 | 2 | 6315 | 1522 | 29794 | 137901 | 96.26% | 143259 | 0.962599208426696 |
| D578-PBS-Myo | 5357 | 29536 | 1803 | 7272 | 7 | 30455 | 6 | 4 | 30678 | 2 | 7135 | 1718 | 29286 | 137902 | 96.26% | 143259 | 0.962606188790931 |
| D690-ICI-Myo | 5322 | 30094 | 1529 | 6322 | 3 | 31086 | 2 | 4 | 31334 | 3 | 6207 | 1521 | 29832 | 137937 | 96.29% | 143259 | 0.96285050153917 |
| D854-PBS-EOI | 5388 | 29426 | 1768 | 7182 | 4 | 30607 | 6 | 6 | 30910 | 4 | 6986 | 1667 | 29305 | 137871 | 96.24% | 143259 | 0.962389797499633 |
| D1266-PBS-Myo | 5564 | 30593 | 1258 | 5239 | 7 | 31788 | 2 | 2 | 32083 | 0 | 5158 | 1219 | 30346 | 137695 | 96.12% | 143259 | 0.961161253394202 |
| 6410-PBS-EOI | 5258 | 29973 | 1643 | 6477 | 5 | 30873 | 2 | 2 | 31243 | 4 | 6338 | 1599 | 29842 | 138001 | 96.33% | 143259 | 0.963297244850236 |
| 7337-PBS-EOI | 5179 | 28512 | 2225 | 8963 | 5 | 29445 | 7 | 4 | 29705 | 3 | 8710 | 2098 | 28403 | 138080 | 96.38% | 143259 | 0.963848693624833 |
| 7909-PBS-EOI | 5391 | 29299 | 1858 | 7524 | 11 | 30217 | 5 | 8 | 30585 | 2 | 7398 | 1758 | 29203 | 137868 | 96.24% | 143259 | 0.962368856406927 |
| 8614-PBS-EOI | 5418 | 30626 | 1351 | 5409 | 5 | 31628 | 6 | 6 | 31853 | 3 | 5176 | 1308 | 30470 | 137841 | 96.22% | 143259 | 0.962180386572571 |
| D589-PBS-Myo | 5380 | 30012 | 1571 | 6390 | 6 | 30961 | 9 | 6 | 31260 | 7 | 6276 | 1563 | 29818 | 137879 | 96.24% | 143259 | 0.962445640413517 |
| D695-ICI-Myo | 5384 | 30305 | 1487 | 5925 | 3 | 31242 | 4 | 0 | 31563 | 1 | 5864 | 1422 | 30059 | 137875 | 96.24% | 143259 | 0.962417718956575 |
| D877-ICI-EOI | 5777 | 29314 | 1728 | 7165 | 8 | 30543 | 3 | 5 | 30827 | 4 | 6981 | 1685 | 29219 | 137482 | 95.97% | 143259 | 0.959674435812061 |
| D1267-PBS-Myo | 6048 | 28483 | 1991 | 8285 | 6 | 29827 | 4 | 4 | 30149 | 4 | 8124 | 1956 | 28378 | 137211 | 95.78% | 143259 | 0.957782757104266 |
| 6868-PBS-EOI | 5292 | 30129 | 1558 | 6342 | 4 | 31017 | 4 | 3 | 31279 | 3 | 6161 | 1510 | 29957 | 137967 | 96.31% | 143259 | 0.963059912466232 |
| 7341-PBS-EOI | 5239 | 28371 | 2254 | 9094 | 12 | 29336 | 11 | 4 | 29633 | 6 | 8963 | 2102 | 28234 | 138020 | 96.34% | 143259 | 0.963429871770709 |
| 7920-PBS-EOI | 5417 | 30623 | 1439 | 5516 | 9 | 31415 | 7 | 7 | 31750 | 2 | 5327 | 1276 | 30471 | 137842 | 96.22% | 143259 | 0.962187366936807 |
| 8618-PBS-EOI | 5383 | 29334 | 1853 | 7470 | 4 | 30307 | 3 | 3 | 30547 | 3 | 7404 | 1837 | 29111 | 137876 | 96.24% | 143259 | 0.962424699320811 |
| D602-ICI-Myo | 5587 | 29827 | 1689 | 6599 | 7 | 30682 | 6 | 5 | 31046 | 2 | 6561 | 1598 | 29650 | 137672 | 96.10% | 143259 | 0.961000705016788 |
| D706-PBS-Myo | 5362 | 28988 | 1985 | 8139 | 9 | 29910 | 11 | 5 | 30168 | 1 | 8054 | 1864 | 28763 | 137897 | 96.26% | 143259 | 0.962571286969754 |
| D884-ICI-Myo | 5498 | 28775 | 2046 | 8228 | 10 | 29857 | 4 | 3 | 30196 | 5 | 8065 | 1858 | 28714 | 137761 | 96.16% | 143259 | 0.961621957433739 |
| D1299-PBS-Myo | 5686 | 29916 | 1540 | 6269 | 6 | 31052 | 6 | 7 | 31410 | 2 | 6176 | 1438 | 29751 | 137573 | 96.03% | 143259 | 0.960309648957483 |
| 6869-PBS-EOI | 5249 | 27946 | 2430 | 9822 | 4 | 28812 | 5 | 7 | 29152 | 5 | 9665 | 2301 | 27861 | 138010 | 96.34% | 143259 | 0.963360068128355 |
| 7349-PBS-SICK | 5268 | 29555 | 1804 | 7208 | 5 | 30496 | 5 | 5 | 30751 | 1 | 7042 | 1748 | 29371 | 137991 | 96.32% | 143259 | 0.963227441207882 |
| 7929-PBS-EOI | 5369 | 29290 | 1902 | 7583 | 8 | 30190 | 8 | 6 | 30495 | 3 | 7465 | 1780 | 29160 | 137890 | 96.25% | 143259 | 0.962522424420106 |
| 8620-PBS-EOI | 5314 | 30549 | 1344 | 5591 | 6 | 31524 | 4 | 3 | 31833 | 3 | 5448 | 1283 | 30357 | 137945 | 96.29% | 143259 | 0.962906344453054 |
| D604-ICI-Myo | 5421 | 28866 | 1993 | 8262 | 4 | 29847 | 6 | 8 | 30119 | 3 | 8034 | 1971 | 28725 | 137838 | 96.22% | 143259 | 0.962159445479865 |
| D721-PBS-Myo | 5371 | 30016 | 1604 | 6447 | 9 | 30932 | 5 | 7 | 31201 | 2 | 6282 | 1548 | 29835 | 137888 | 96.25% | 143259 | 0.962508463691635 |
| D896-ICI-Myo | 5447 | 28697 | 2024 | 8374 | 9 | 29928 | 5 | 7 | 30140 | 5 | 8111 | 1918 | 28594 | 137812 | 96.20% | 143259 | 0.961977956009745 |
| D1628-ICI-Myo | 5525 | 29308 | 1839 | 7308 | 8 | 30474 | 6 | 8 | 30737 | 1 | 7084 | 1716 | 29245 | 137734 | 96.14% | 143259 | 0.961433487599383 |
| 6870-PBS-EOI | 5335 | 30862 | 1263 | 5081 | 6 | 31753 | 5 | 4 | 32069 | 4 | 5106 | 1218 | 30553 | 137924 | 96.28% | 143259 | 0.96275975680411 |
| 7442-ICI-EOI | 5282 | 30393 | 1469 | 5760 | 5 | 31347 | 5 | 2 | 31750 | 3 | 5674 | 1373 | 30196 | 137977 | 96.31% | 143259 | 0.963129716108587 |
| 8059-PBS-EOI | 5298 | 29064 | 1957 | 8008 | 3 | 30054 | 5 | 4 | 30305 | 3 | 7791 | 1862 | 28905 | 137961 | 96.30% | 143259 | 0.96301803028082 |
| 8835-PBS-EOI | 5345 | 31532 | 1001 | 3925 | 6 | 32458 | 2 | 1 | 32781 | 2 | 3931 | 1040 | 31235 | 137914 | 96.27% | 143259 | 0.962689953161756 |
| D605-ICI-Myo | 5530 | 29851 | 1624 | 6632 | 2 | 30762 | 1 | 4 | 31084 | 1 | 6616 | 1624 | 29528 | 137729 | 96.14% | 143259 | 0.961398585778206 |
| D722-PBS-Myo | 5452 | 28786 | 2011 | 8389 | 12 | 29707 | 12 | 6 | 30009 | 5 | 8238 | 1990 | 28642 | 137807 | 96.19% | 143259 | 0.961943054188568 |
| D914-PBS-Myo | 5488 | 30149 | 1538 | 5989 | 6 | 31168 | 6 | 6 | 31564 | 3 | 5969 | 1452 | 29921 | 137771 | 96.17% | 143259 | 0.961691761076093 |
| D1630-ICI-Myo | 5554 | 29067 | 1936 | 7718 | 10 | 30215 | 7 | 5 | 30455 | 1 | 7602 | 1847 | 28842 | 137705 | 96.12% | 143259 | 0.961231057036556 |
| 6881-PBS-EOI | 5280 | 30797 | 1323 | 5211 | 7 | 31671 | 5 | 4 | 32019 | 4 | 5051 | 1248 | 30639 | 137979 | 96.31% | 143259 | 0.963143676837057 |
| 7445-ICI-EOI | 5235 | 29914 | 1592 | 6605 | 9 | 30891 | 7 | 4 | 31191 | 1 | 6498 | 1572 | 29740 | 138024 | 96.35% | 143259 | 0.963457793227651 |
| 8065-PBS-EOI | 5291 | 28901 | 1985 | 8262 | 7 | 29934 | 8 | 5 | 30139 | 3 | 8087 | 1949 | 28688 | 137968 | 96.31% | 143259 | 0.963066892830468 |
| 8838-PBS-EOI | 5326 | 29871 | 1672 | 6665 | 5 | 30764 | 6 | 4 | 31037 | 2 | 6677 | 1635 | 29595 | 137933 | 96.28% | 143259 | 0.962822580082229 |
| D627-ICI-Myo | 5590 | 30646 | 1324 | 5379 | 6 | 31497 | 5 | 1 | 31832 | 3 | 5354 | 1280 | 30342 | 137669 | 96.10% | 143259 | 0.960979763924082 |
| D753-ICI-Myo | 5551 | 30118 | 1548 | 6262 | 3 | 30856 | 4 | 5 | 31244 | 3 | 6270 | 1522 | 29873 | 137708 | 96.13% | 143259 | 0.961251998129262 |
| D920-PBS-Myo | 5856 | 29240 | 1798 | 7151 | 8 | 30533 | 4 | 4 | 30855 | 7 | 7008 | 1703 | 29092 | 137403 | 95.91% | 143259 | 0.959122987037464 |
| D1650-ICI-SICK | 5710 | 29213 | 1758 | 7330 | 7 | 30423 | 5 | 7 | 30752 | 5 | 7213 | 1768 | 29068 | 137549 | 96.01% | 143259 | 0.960142120215833 |
| 7167-ICI-EOI | 5386 | 30147 | 1558 | 6150 | 7 | 31036 | 6 | 4 | 31390 | 4 | 6143 | 1527 | 29901 | 137873 | 96.24% | 143259 | 0.962403758228104 |
| 7448-ICI-EOI | 5467 | 28301 | 2270 | 9148 | 9 | 29207 | 8 | 4 | 29493 | 4 | 9004 | 2180 | 28164 | 137792 | 96.18% | 143259 | 0.961838348725036 |
| 8151-PBS-EOI | 5367 | 29234 | 1797 | 7573 | 10 | 30376 | 6 | 5 | 30554 | 3 | 7458 | 1849 | 29027 | 137892 | 96.25% | 143259 | 0.962536385148577 |
| 8842-PBS-EOI | 5423 | 29891 | 1638 | 6501 | 5 | 30873 | 5 | 5 | 31252 | 4 | 6416 | 1495 | 29751 | 137836 | 96.21% | 143259 | 0.962145484751394 |
| D644-ICI-EOI | 5452 | 29157 | 1928 | 7879 | 8 | 29965 | 8 | 9 | 30333 | 4 | 7653 | 1792 | 29071 | 137807 | 96.19% | 143259 | 0.961943054188568 |
| D762-ICI-Myo | 5492 | 29182 | 1923 | 7786 | 5 | 30049 | 3 | 6 | 30350 | 2 | 7576 | 1859 | 29026 | 137767 | 96.17% | 143259 | 0.961663839619151 |
| D1063-PBS-Myo | 5726 | 28166 | 2233 | 9162 | 9 | 29304 | 10 | 8 | 29569 | 4 | 8863 | 2138 | 28067 | 137533 | 96.00% | 143259 | 0.960030434388066 |
| D1655-ICI-Myo | 5821 | 30935 | 1157 | 4597 | 4 | 32029 | 4 | 3 | 32383 | 3 | 4583 | 1086 | 30654 | 137438 | 95.94% | 143259 | 0.959367299785703 |
| 7174-ICI-EOI | 5395 | 30225 | 1589 | 6160 | 3 | 31038 | 4 | 5 | 31356 | 3 | 5963 | 1463 | 30055 | 137864 | 96.23% | 143259 | 0.962340934949986 |
| 8600-PBS-EOI | 5523 | 29963 | 1579 | 6642 | 5 | 30799 | 4 | 4 | 30978 | 1 | 6467 | 1612 | 29682 | 137736 | 96.14% | 143259 | 0.961447448327854 |
| D241-PBS-SICK | 5480 | 30042 | 1574 | 6360 | 8 | 31022 | 3 | 2 | 31248 | 2 | 6057 | 1481 | 29980 | 137779 | 96.17% | 143259 | 0.961747603989976 |
| Neogen_Sample_ID | Provided.Sex | Inferred.Sex |
|---|---|---|
| D497-PBS-Myo | F | F |
| D645-ICI-Myo | F | F |
| D764-ICI-Myo | F | F |
| D1090-ICI-Myo | F | F |
| D1656-ICI-Myo | F | F |
| 7185-PBS-EOI | F | F |
| 7787-ICI-EOI | F | F |
| 8623-PBS-EOI | F | F |
| D501-ICI-Myo | F | F |
| D647-PBS-EOI | F | F |
| D772-PBS-Myo | F | F |
| D1100-PBS-Myo | F | F |
| D1729-PBS-Myo | F | F |
| 7277-PBS-EOI | F | F |
| 7796-PBS-EOI | F | F |
| 8625-PBS-EOI | F | F |
| D533-ICI-Myo | F | F |
| D652-PBS-Myo | F | F |
| D789-ICI-Myo | F | F |
| D1168-PBS-SICK | F | F |
| D133-PBS-EOI | F | F |
| 7278-PBS-EOI | F | F |
| 7800-PBS-EOI | F | F |
| D249-PBS-EOI | F | F |
| D249-PBS-EOI | F | F |
| D249-PBS-EOI | F | F |
| D249-PBS-EOI | F | F |
| D561-ICI-Myo | F | F |
| D665-PBS-Myo | F | F |
| D827-ICI-EOI | F | F |
| D1224-ICI-Myo | F | F |
| 6197-PBS-EOI | F | F |
| 7328-PBS-EOI | F | F |
| 7801-PBS-EOI | F | F |
| 8609-PBS-EOI | F | F |
| D564-ICI-Myo | F | F |
| D683-ICI-Myo | F | F |
| D828-ICI-Myo | F | F |
| D1244-PBS-Myo | F | F |
| 6200-PBS-SICK | F | F |
| 7334-PBS-EOI | F | F |
| 7907-PBS-EOI | F | F |
| 8610-PBS-EOI | F | F |
| D578-PBS-Myo | F | F |
| D690-ICI-Myo | F | F |
| D854-PBS-EOI | F | F |
| D1266-PBS-Myo | F | F |
| 6410-PBS-EOI | F | F |
| 7337-PBS-EOI | F | F |
| 7909-PBS-EOI | F | F |
| 8614-PBS-EOI | F | F |
| D589-PBS-Myo | F | F |
| D695-ICI-Myo | F | F |
| D877-ICI-EOI | F | F |
| D1267-PBS-Myo | F | F |
| 6868-PBS-EOI | F | F |
| 7341-PBS-EOI | F | F |
| 7920-PBS-EOI | F | F |
| 8618-PBS-EOI | F | F |
| D602-ICI-Myo | F | F |
| D706-PBS-Myo | F | F |
| D884-ICI-Myo | F | F |
| D1299-PBS-Myo | F | F |
| 6869-PBS-EOI | F | F |
| 7349-PBS-SICK | F | F |
| 7929-PBS-EOI | F | F |
| 8620-PBS-EOI | F | F |
| D604-ICI-Myo | F | F |
| D721-PBS-Myo | F | F |
| D896-ICI-Myo | F | F |
| D1628-ICI-Myo | F | F |
| 6870-PBS-EOI | F | F |
| 7442-ICI-EOI | F | F |
| 8059-PBS-EOI | F | F |
| 8835-PBS-EOI | F | F |
| D605-ICI-Myo | F | F |
| D722-PBS-Myo | F | F |
| D914-PBS-Myo | F | F |
| D1630-ICI-Myo | F | F |
| 6881-PBS-EOI | F | F |
| 7445-ICI-EOI | F | F |
| 8065-PBS-EOI | F | F |
| 8838-PBS-EOI | F | F |
| D627-ICI-Myo | F | F |
| D753-ICI-Myo | F | F |
| D920-PBS-Myo | F | F |
| D1650-ICI-SICK | F | F |
| 7167-ICI-EOI | F | M |
| 7448-ICI-EOI | F | F |
| 8151-PBS-EOI | F | F |
| 8842-PBS-EOI | F | F |
| D644-ICI-EOI | F | F |
| D762-ICI-Myo | F | F |
| D1063-PBS-Myo | F | F |
| D1655-ICI-Myo | F | F |
| 7174-ICI-EOI | F | F |
| 8600-PBS-EOI | F | F |
| D241-PBS-SICK | F | F |
| Neogen_Sample_ID | sex_pheno | Inferred.Sex_pheno | Myocarditis.Status | age.of.clinical.phenotype..weeks. |
|---|---|---|---|---|
| D497-PBS-Myo | F | F | YES | – |
| D645-ICI-Myo | F | F | YES | – |
| D764-ICI-Myo | F | F | YES | 13 |
| D1090-ICI-Myo | F | F | YES | 29 |
| D1656-ICI-Myo | F | F | YES | 13 |
| 7185-PBS-EOI | F | F | NO | – |
| 7787-ICI-EOI | F | F | NO | – |
| 8623-PBS-EOI | F | F | NO | – |
| D501-ICI-Myo | F | F | YES | – |
| D647-PBS-EOI | F | F | NO | – |
| D772-PBS-Myo | F | F | YES | – |
| D1100-PBS-Myo | F | F | YES | 35.14285714 |
| D1729-PBS-Myo | F | F | YES | 16 |
| 7277-PBS-EOI | F | F | NO | – |
| 7796-PBS-EOI | F | F | NO | – |
| 8625-PBS-EOI | F | F | NO | – |
| D533-ICI-Myo | F | F | YES | – |
| D652-PBS-Myo | F | F | YES | – |
| D789-ICI-Myo | F | F | YES | – |
| D1168-PBS-SICK | F | F | NO | – |
| D133-PBS-EOI | F | F | NO | – |
| 7278-PBS-EOI | F | F | NO | – |
| 7800-PBS-EOI | F | F | NO | – |
| D249-PBS-EOI | F | F | NO | – |
| D249-PBS-EOI | F | F | NO | – |
| D249-PBS-EOI | F | F | NO | – |
| D249-PBS-EOI | F | F | NO | – |
| D561-ICI-Myo | F | F | YES | – |
| D665-PBS-Myo | F | F | YES | – |
| D827-ICI-EOI | F | F | NO | – |
| D1224-ICI-Myo | F | F | YES | 28 |
| 6197-PBS-EOI | F | F | NO | – |
| 7328-PBS-EOI | F | F | NO | – |
| 7801-PBS-EOI | F | F | NO | – |
| 8609-PBS-EOI | F | F | NO | – |
| D564-ICI-Myo | F | F | YES | – |
| D683-ICI-Myo | F | F | YES | – |
| D828-ICI-Myo | F | F | YES | – |
| D1244-PBS-Myo | F | F | YES | 31 |
| 6200-PBS-SICK | F | F | NO | – |
| 7334-PBS-EOI | F | F | NO | – |
| 7907-PBS-EOI | F | F | NO | – |
| 8610-PBS-EOI | F | F | NO | – |
| D578-PBS-Myo | F | F | YES | – |
| D690-ICI-Myo | F | F | YES | – |
| D854-PBS-EOI | F | F | NO | – |
| D1266-PBS-Myo | F | F | YES | 31.14285714 |
| 6410-PBS-EOI | F | F | NO | – |
| 7337-PBS-EOI | F | F | NO | – |
| 7909-PBS-EOI | F | F | NO | – |
| 8614-PBS-EOI | F | F | NO | – |
| D589-PBS-Myo | F | F | YES | – |
| D695-ICI-Myo | F | F | YES | – |
| D877-ICI-EOI | F | F | NO | – |
| D1267-PBS-Myo | F | F | YES | 25 |
| 6868-PBS-EOI | F | F | NO | – |
| 7341-PBS-EOI | F | F | NO | – |
| 7920-PBS-EOI | F | F | NO | – |
| 8618-PBS-EOI | F | F | NO | – |
| D602-ICI-Myo | F | F | YES | – |
| D706-PBS-Myo | F | F | YES | – |
| D884-ICI-Myo | F | F | YES | – |
| D1299-PBS-Myo | F | F | YES | 3.142857143 |
| 6869-PBS-EOI | F | F | NO | – |
| 7349-PBS-SICK | F | F | NO | – |
| 7929-PBS-EOI | F | F | NO | – |
| 8620-PBS-EOI | F | F | NO | – |
| D604-ICI-Myo | F | F | YES | – |
| D721-PBS-Myo | F | F | YES | – |
| D896-ICI-Myo | F | F | YES | 31.42857143 |
| D1628-ICI-Myo | F | F | YES | 27 |
| 6870-PBS-EOI | F | F | NO | – |
| 7442-ICI-EOI | F | F | NO | – |
| 8059-PBS-EOI | F | F | NO | – |
| 8835-PBS-EOI | F | F | NO | – |
| D605-ICI-Myo | F | F | YES | 39.14285714 |
| D722-PBS-Myo | F | F | YES | – |
| D914-PBS-Myo | F | F | YES | – |
| D1630-ICI-Myo | F | F | YES | 13.57142857 |
| 6881-PBS-EOI | F | F | NO | – |
| 7445-ICI-EOI | F | F | NO | – |
| 8065-PBS-EOI | F | F | NO | – |
| 8838-PBS-EOI | F | F | NO | – |
| D627-ICI-Myo | F | F | YES | – |
| D753-ICI-Myo | F | F | YES | – |
| D920-PBS-Myo | F | F | YES | – |
| D1650-ICI-SICK | F | F | NO | – |
| 7167-ICI-EOI | F | M | NO | – |
| 7448-ICI-EOI | F | F | NO | – |
| 8151-PBS-EOI | F | F | NO | – |
| 8842-PBS-EOI | F | F | NO | – |
| D644-ICI-EOI | F | F | NO | – |
| D762-ICI-Myo | F | F | YES | – |
| D1063-PBS-Myo | F | F | YES | 34.85714286 |
| D1655-ICI-Myo | F | F | YES | 14 |
| 7174-ICI-EOI | F | F | NO | – |
| 8600-PBS-EOI | F | F | NO | – |
| D241-PBS-SICK | F | F | NO | – |
| Neogen_Sample_ID | no_pheno | low_call.rate | different_sex |
|---|---|---|---|
| 7167-ICI-EOI | XX |
R version 4.2.2 (2022-10-31)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur ... 10.16
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] tibble_3.1.8 readxl_1.4.1 cluster_2.1.4 dplyr_1.0.10
[5] optparse_1.7.3 rhdf5_2.40.0 mclust_6.0.0 tidyr_1.2.1
[9] data.table_1.14.6 knitr_1.41 kableExtra_1.3.4 workflowr_1.7.0
loaded via a namespace (and not attached):
[1] tidyselect_1.2.0 xfun_0.35 bslib_0.4.1 purrr_0.3.5
[5] colorspace_2.0-3 vctrs_0.5.1 generics_0.1.3 getopt_1.20.3
[9] htmltools_0.5.3 viridisLite_0.4.1 yaml_2.3.6 utf8_1.2.2
[13] rlang_1.0.6 jquerylib_0.1.4 later_1.3.0 pillar_1.8.1
[17] withr_2.5.0 DBI_1.1.3 glue_1.6.2 lifecycle_1.0.3
[21] stringr_1.5.0 cellranger_1.1.0 munsell_0.5.0 rvest_1.0.3
[25] evaluate_0.18 callr_3.7.3 fastmap_1.1.0 httpuv_1.6.6
[29] ps_1.7.2 fansi_1.0.3 Rcpp_1.0.9 promises_1.2.0.1
[33] scales_1.2.1 cachem_1.0.6 webshot_0.5.4 jsonlite_1.8.4
[37] fs_1.5.2 systemfonts_1.0.4 digest_0.6.30 stringi_1.7.8
[41] processx_3.8.0 getPass_0.2-2 rprojroot_2.0.3 rhdf5filters_1.8.0
[45] cli_3.4.1 tools_4.2.2 magrittr_2.0.3 sass_0.4.4
[49] whisker_0.4.1 pkgconfig_2.0.3 ellipsis_0.3.2 xml2_1.3.3
[53] assertthat_0.2.1 rmarkdown_2.18 svglite_2.1.0 httr_1.4.4
[57] rstudioapi_0.14 Rhdf5lib_1.18.2 R6_2.5.1 git2r_0.30.1
[61] compiler_4.2.2