QTL Analysis - binary [ICI vs EOI]

Data Information
Loading Data
Genome-wide scan
LOD peaks
- Chromsome 3
- Chromsome 4
Multi-qtl (genoprobs, haley knott regression method)

Last updated: 2022-03-22

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Knit directory: Serreze-T1D_Workflow/

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File	Version	Author	Date	Message
Rmd	68dca64	Belinda Cornes	2022-03-22	updated ici.vs.eoi binary
html	a4d66b5	Belinda Cornes	2022-03-15	Build site.
Rmd	93afca9	Belinda Cornes	2022-03-15	updated binary qtl

Data Information

binary phenotype (therefore no kinship)
no Xcovar
low frequency (< 5% in samples) removed
disproportionate markers removed

Loading Data

We will load the data and subset indivials out that are in the groups of interest. We will create a binary phenotype from this (EOI ==0, ICI == 1).

load("data/gm_allqc_4.batches.RData")

#gm_allqc
gm=gm_allqc
gm

Object of class cross2 (crosstype "bc")

Total individuals               188
No. genotyped individuals       188
No. phenotyped individuals      188
No. with both geno & pheno      188

No. phenotypes                    1
No. covariates                    6
No. phenotype covariates          0

No. chromosomes                  20
Total markers                131578

No. markers by chr:
    1     2     3     4     5     6     7     8     9    10    11    12    13 
 9977 10005  7858  7589  7621  7758  7413  6472  6725  6396  7154  6137  6085 
   14    15    16    17    18    19     X 
 5981  5346  5019  5093  4607  3564  4778

#pr <- readRDS("data/serreze_probs_allqc.rds")
#pr <- readRDS("data/serreze_probs.rds")

##extracting animals with ici and eoi group status
miceinfo <- gm$covar[gm$covar$group == "EOI" | gm$covar$group == "ICI",]
table(miceinfo$group)


EOI ICI 
 69  92

mice.ids <- rownames(miceinfo)

gm <- gm[mice.ids]
gm

Object of class cross2 (crosstype "bc")

Total individuals               161
No. genotyped individuals       161
No. phenotyped individuals      161
No. with both geno & pheno      161

No. phenotypes                    1
No. covariates                    6
No. phenotype covariates          0

No. chromosomes                  20
Total markers                131578

No. markers by chr:
    1     2     3     4     5     6     7     8     9    10    11    12    13 
 9977 10005  7858  7589  7621  7758  7413  6472  6725  6396  7154  6137  6085 
   14    15    16    17    18    19     X 
 5981  5346  5019  5093  4607  3564  4778

table(gm$covar$group)


EOI ICI 
 69  92

gm$covar$ICI.vs.EOI <- ifelse(gm$covar$group == "EOI", 0, 1)

covars <- read_csv("data/covar_corrected.cleaned_ici.vs.eoi.csv")
#removing any missing info
covars <- subset(covars, covars$ICI.vs.EOI!='')
nrow(covars)

[1] 161

table(covars$group)


EOI ICI 
 69  92

#keeping only informative mice
gm <- gm[covars$Mouse.ID]
gm

Object of class cross2 (crosstype "bc")

Total individuals               161
No. genotyped individuals       161
No. phenotyped individuals      161
No. with both geno & pheno      161

No. phenotypes                    1
No. covariates                    7
No. phenotype covariates          0

No. chromosomes                  20
Total markers                131578

No. markers by chr:
    1     2     3     4     5     6     7     8     9    10    11    12    13 
 9977 10005  7858  7589  7621  7758  7413  6472  6725  6396  7154  6137  6085 
   14    15    16    17    18    19     X 
 5981  5346  5019  5093  4607  3564  4778

table(gm$covar$group)


EOI ICI 
 69  92

#pr.qc.ids <- pr
#for (i in 1:20){pr.qc.ids[[i]] = pr.qc.ids[[i]][covars$Mouse.ID,,]}


##dropping monomorphic markers within the dataset

g <- do.call("cbind", gm$geno)

gf_mar <- t(apply(g, 2, function(a) table(factor(a, 1:2))/sum(a != 0)))
#gn_mar <- t(apply(g, 2, function(a) table(factor(a, 1:2))))

gf_mar <- gf_mar[gf_mar[,2] != "NaN",]

count <- rowSums(gf_mar <=0.05)
low_freq_df <- merge(as.data.frame(gf_mar),as.data.frame(count), by="row.names",all=T)
low_freq_df[is.na(low_freq_df)] <- ''
low_freq_df <- low_freq_df[low_freq_df$count == 1,]
rownames(low_freq_df) <- low_freq_df$Row.names

low_freq <- find_markerpos(gm, rownames(low_freq_df))
low_freq$id <- rownames(low_freq)

nrow(low_freq)

[1] 99077

low_freq_bad <- merge(low_freq,low_freq_df, by="row.names",all=T)
names(low_freq_bad)[1] <- c("marker")

gf_mar <- gf_mar[gf_mar[,2] != "NaN",]
MAF <- apply(gf_mar, 1, function(x) min(x))
MAF <- as.data.frame(MAF)
MAF$index <- 1:nrow(gf_mar)
gf_mar_maf <- merge(gf_mar,as.data.frame(MAF), by="row.names")
gf_mar_maf <- gf_mar_maf[order(gf_mar_maf$index),]

gfmar <- NULL
gfmar$gfmar_mar_0 <- sum(gf_mar_maf$MAF==0)
gfmar$gfmar_mar_1 <- sum(gf_mar_maf$MAF< 0.01)
gfmar$gfmar_mar_5 <- sum(gf_mar_maf$MAF< 0.05)
gfmar$gfmar_mar_10 <- sum(gf_mar_maf$MAF< 0.10)
gfmar$gfmar_mar_15 <- sum(gf_mar_maf$MAF< 0.15)
gfmar$gfmar_mar_25 <- sum(gf_mar_maf$MAF< 0.25)
gfmar$gfmar_mar_50 <- sum(gf_mar_maf$MAF< 0.50)
gfmar$total_snps <- nrow(as.data.frame(gf_mar_maf))

gfmar <- t(as.data.frame(gfmar))
gfmar <- as.data.frame(gfmar)
gfmar$count <- gfmar$V1

gfmar[c(2)] %>%
  kable(escape = F,align = c("ccccccccc"),linesep ="\\hline") %>%
  kable_styling(full_width = F) %>%
  kable_styling("striped", full_width = F)  %>%
  row_spec(8 ,bold=T,color= "white",background = "black")

	count
gfmar_mar_0	89667
gfmar_mar_1	92615
gfmar_mar_5	99045
gfmar_mar_10	99502
gfmar_mar_15	99619
gfmar_mar_25	100097
gfmar_mar_50	131139
total_snps	131578

gm_qc <- drop_markers(gm, low_freq_bad$marker)
gm_qc <- drop_nullmarkers(gm_qc)

gm_qc

Object of class cross2 (crosstype "bc")

Total individuals              161
No. genotyped individuals      161
No. phenotyped individuals     161
No. with both geno & pheno     161

No. phenotypes                   1
No. covariates                   7
No. phenotype covariates         0

No. chromosomes                 20
Total markers                32501

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
2940 2853 2033 2045 1931 2041 1858 1677 1991 1208 2057 1387 1617 1685 1194  922 
  17   18   19    X 
 382 1073 1052  555

## dropping disproportionate markers
dismark <- read.csv("data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio.csv")
nrow(dismark)

[1] 32501

names(dismark)[1] <- c("marker")
dismark <- dismark[!dismark$Include,]
nrow(dismark)

[1] 18736

gm_qc_dis <- drop_markers(gm_qc, dismark$marker)
gm_qc_dis <- drop_nullmarkers(gm_qc_dis)

gm = gm_qc_dis
gm

Object of class cross2 (crosstype "bc")

Total individuals              161
No. genotyped individuals      161
No. phenotyped individuals     161
No. with both geno & pheno     161

No. phenotypes                   1
No. covariates                   7
No. phenotype covariates         0

No. chromosomes                 19
Total markers                13765

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   16   17 
2142 1860 1022  570  688  514 1060  294  772  205  718   11 1270 1105  490  291 
  18   19    X 
 494  208   51

markers <- marker_names(gm)
gmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_hh/genetic_map.csv")
pmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_hh/physical_map.csv")
mapdf <- merge(gmapdf,pmapdf, by=c("marker","chr"), all=T)
rownames(mapdf) <- mapdf$marker
mapdf <- mapdf[markers,]
names(mapdf) <- c('marker','chr','gmapdf','pmapdf')
mapdfnd <- mapdf[!duplicated(mapdf[c(2:3)]),]

pr.qc <- calc_genoprob(gm)

Genome-wide scan

For each of the phenotype analyzed, permutations were used for each model to obtain genome-wide LOD significance threshold for p < 0.01, p < 0.05, p < 0.10, respectively, separately for X and automsomes (A).

The table shows the estimated significance thresholds from permutation test.

We also looked at the kinship to see how correlated each sample is. Kinship values between pairs of samples range between 0 (no relationship) and 1.0 (completely identical). The darker the colour the more indentical the pairs are.

#Xcovar <- get_x_covar(gm)
#addcovar = model.matrix(~Sex, data = covars)[,-1]

#K <- calc_kinship(pr.qc, type = "loco")
#heatmap(K[[1]])
#K.overall <- calc_kinship(pr.qc, type = "overall")
#heatmap(K.overall)
kinship <- calc_kinship(pr.qc)
heatmap(kinship)

Version	Author	Date
a4d66b5	Belinda Cornes	2022-03-15

#operm <- scan1perm(pr.qc, gm$covar$phenos, Xcovar=Xcovar, n_perm=2000)
#operm <- scan1perm(pr.qc, gm$covar$phenos, addcovar = addcovar, n_perm=2000)
#operm <- scan1perm(pr.qc, gm$covar$phenos, n_perm=2000)
operm <- scan1perm(pr.qc, gm$covar["ICI.vs.EOI"], model="binary", n_perm=1000, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	3.823422	3.940546
0.05	3.071140	3.144630
0.1	2.715963	2.715963

The figures below show QTL maps for each phenotype

#out <- scan1(pr.qc, gm$covar["ICI.vs.EOI"], Xcovar=Xcovar, model="binary")
out <- scan1(pr.qc, gm$covar["ICI.vs.EOI"], model="binary")

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

plot_lod(out,gm$gmap)

Version	Author	Date
a4d66b5	Belinda Cornes	2022-03-15

LOD peaks

The table below shows QTL peaks associated with the phenotype. We use the 95% threshold from the permutations to find peaks.

#peaks<-find_peaks(out, gm$gmap, threshold=3.6, drop=1.5, peakdrop=3)
#peaks <- find_peaks(out, gm$gmap,drop=1.5, peakdrop=3)
#peaks <- find_peaks(out, gm$gmap, threshold=3, peakdrop=1, drop=1)
#peaks <- find_peaks(out, gm$gmap, peakdrop=0.5, drop=0.5)
peaks <- find_peaks(out, gm$gmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)

rownames(peaks) <- NULL
peaks[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	ICI.vs.EOI	3	29.038	6.364394	21.228	35.891
1	ICI.vs.EOI	4	69.108	3.468241	63.399	82.840

#plot only peak chromosomes

plot_lod_chr<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

for (i in 1:nrow(peaks)){
  plot_lod_chr(out,gm$gmap, peaks$chr[i])
}

Version	Author	Date
a4d66b5	Belinda Cornes	2022-03-15

print("peaks in MB positions")

[1] "peaks in MB positions"

peaks_mbl <- list()
#corresponding info in Mb
for(i in 1:nrow(peaks)){
  lodindex <- peaks$lodindex[i]
  lodcolumn <- peaks$lodcolumn[i]
  chr <- peaks$chr[i]
  lod <- peaks$lod[i]
  pos <- mapdf$pmapdf[which(mapdf$gmapdf == peaks$pos[i] & mapdf$chr == peaks$chr[i])]
  ci_lo <- mapdf$pmapdf[which(mapdf$gmapdf == peaks$ci_lo[i] & mapdf$chr == peaks$chr[i])]
  ci_hi <- mapdf$pmapdf[which(mapdf$gmapdf == peaks$ci_hi[i] & mapdf$chr == peaks$chr[i])]
  peaks_mb=cbind(lodindex, lodcolumn, chr, pos, lod, ci_lo, ci_hi)
  peaks_mbl[[i]] <- peaks_mb
}
peaks_mba <- do.call(rbind, peaks_mbl)
peaks_mba <- as.data.frame(peaks_mba)
#peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")] <- sapply(peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")], as.numeric)

rownames(peaks_mba) <- NULL
peaks_mba[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	ICI.vs.EOI	3	59.429352	6.36439381654824	48.232305	81.503929
1	ICI.vs.EOI	4	136.886057	3.46824068609622	130.092679	151.967752

plot_lod_chr_mb<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " [positions in MB]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

for (i in 1:nrow(peaks)){
  plot_lod_chr_mb(out,gm$pmap, peaks$chr[i])
}

## QTL effects

For each peak LOD location we give a list of gene

Chromsome 3

query_variants <- create_variant_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/cc_variants.sqlite")
query_genes <- create_gene_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/mouse_genes_mgi.sqlite")

for (i in 1){
#for (i in 1:1){
  #Plot 1
  marker = find_marker(gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i])
  #g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE, minprob = 0.5)
  gp <- g[,marker]
  gp[gp==1] <- "AA"
  gp[gp==2] <- "AB"
  gp[gp==0] <- NA
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(gp, gm$covar[,peaks$lodcolumn[i]], ylab=peaks$lodcolumn[i], sort=FALSE)
  title(main = paste("chr", chr=peaks$chr[i], "pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"mb (",peaks$lodcolumn[i],")"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]
  

# Plot 2
  pr_sub <- pull_genoprobint(pr.qc, gm$gmap, chr, c(peaks$ci_lo[i], peaks$ci_hi[i]))
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  #coeff <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  #coeff_sub <- scan1coef(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  blup <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]])
  blup_sub <- scan1blup(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]])

  #plot_coef(coeff, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1coeff; positions in cM] )")
  #     )

  #plot_coef(coeff_sub, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1coeff; positions in cM] ) ")
  #     )


  plot_coef(blup, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste("chr", chr=peaks$chr[i], "pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1blup; positions in cM] )")
       )

  plot_coef(blup_sub, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste("chr", chr=peaks$chr[i], "pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1blup; positions in cM] )")
       )

  #last_coef <- unclass(coeff)[nrow(coeff),1:3]
  #for(t in seq(along=last_coef))
  #axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])


  genesgss = query_genes(chr, start, end)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  #genesgss <- 
  #table <- 
  #genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")] %>%
  #kable(escape = F,align = c("ccccccccccc")) %>%
  #kable_styling("striped", full_width = T) #%>% 
  #cat #%>%
  #column_spec(1, bold=TRUE)
#
  #print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], escape = F,align = c("ccccccccccc")))

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  #table
  

}

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	48.54642	48.57947	positive	MGI_C57BL6J_5826472	Gm46835	NCBI_Gene:108168915	MGI:5826472	lncRNA gene	predicted gene, 46835
3	gene	48.60573	48.60910	negative	MGI_C57BL6J_1913582	1700018B24Rik	NCBI_Gene:66332,ENSEMBL:ENSMUSG00000037910	MGI:1913582	lncRNA gene	RIKEN cDNA 1700018B24 gene
3	gene	48.74851	48.76095	negative	MGI_C57BL6J_5610418	Gm37190	ENSEMBL:ENSMUSG00000102181	MGI:5610418	lncRNA gene	predicted gene, 37190
3	gene	48.95472	48.95488	positive	MGI_C57BL6J_5453288	Gm23511	ENSEMBL:ENSMUSG00000065018	MGI:5453288	snRNA gene	predicted gene, 23511
3	gene	49.06237	49.09636	positive	MGI_C57BL6J_5590574	Gm31415	NCBI_Gene:102633632,ENSEMBL:ENSMUSG00000102263	MGI:5590574	lncRNA gene	predicted gene, 31415
3	gene	49.13746	49.13853	positive	MGI_C57BL6J_5611047	Gm37819	ENSEMBL:ENSMUSG00000104186	MGI:5611047	unclassified gene	predicted gene, 37819
3	pseudogene	49.20771	49.20807	negative	MGI_C57BL6J_5610912	Gm37684	ENSEMBL:ENSMUSG00000103027	MGI:5610912	pseudogene	predicted gene, 37684
3	gene	49.32568	49.36736	positive	MGI_C57BL6J_5295664	Gm20557	NCBI_Gene:329633,ENSEMBL:ENSMUSG00000102679	MGI:5295664	lncRNA gene	predicted gene, 20557
3	pseudogene	49.38115	49.38285	negative	MGI_C57BL6J_3643624	Gm5846	NCBI_Gene:545519,ENSEMBL:ENSMUSG00000104309	MGI:3643624	pseudogene	predicted gene 5846
3	pseudogene	49.40082	49.46744	negative	MGI_C57BL6J_3780091	Gm9683	NCBI_Gene:676568	MGI:3780091	pseudogene	predicted gene 9683
3	gene	49.49135	49.49148	positive	MGI_C57BL6J_5452257	Gm22480	ENSEMBL:ENSMUSG00000084517	MGI:5452257	snoRNA gene	predicted gene, 22480
3	pseudogene	49.53075	49.53131	positive	MGI_C57BL6J_5610652	Gm37424	ENSEMBL:ENSMUSG00000104437	MGI:5610652	pseudogene	predicted gene, 37424
3	pseudogene	49.60356	49.60388	positive	MGI_C57BL6J_5611489	Gm38261	ENSEMBL:ENSMUSG00000102731	MGI:5611489	pseudogene	predicted gene, 38261
3	pseudogene	49.60423	49.60447	positive	MGI_C57BL6J_5611316	Gm38088	ENSEMBL:ENSMUSG00000103249	MGI:5611316	pseudogene	predicted gene, 38088
3	pseudogene	49.63244	49.63297	negative	MGI_C57BL6J_3780498	Gm2328	NCBI_Gene:100039587,ENSEMBL:ENSMUSG00000104134	MGI:3780498	pseudogene	predicted gene 2328
3	pseudogene	49.64348	49.64413	positive	MGI_C57BL6J_5588900	Gm29741	NCBI_Gene:101055903,ENSEMBL:ENSMUSG00000103568	MGI:5588900	pseudogene	predicted gene, 29741
3	gene	49.65876	49.65887	positive	MGI_C57BL6J_5452873	Gm23096	ENSEMBL:ENSMUSG00000065381	MGI:5452873	snRNA gene	predicted gene, 23096
3	gene	49.74329	49.75738	negative	MGI_C57BL6J_1920423	Pcdh18	NCBI_Gene:73173,ENSEMBL:ENSMUSG00000037892	MGI:1920423	protein coding gene	protocadherin 18
3	pseudogene	49.78043	49.78089	negative	MGI_C57BL6J_5610778	Gm37550	ENSEMBL:ENSMUSG00000102943	MGI:5610778	pseudogene	predicted gene, 37550
3	gene	49.89253	50.49909	negative	MGI_C57BL6J_1347355	Slc7a11	NCBI_Gene:26570,ENSEMBL:ENSMUSG00000027737	MGI:1347355	protein coding gene	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
3	gene	50.00197	50.01078	positive	MGI_C57BL6J_5611082	Gm37854	ENSEMBL:ENSMUSG00000102892	MGI:5611082	lncRNA gene	predicted gene, 37854
3	gene	50.01177	50.02624	negative	MGI_C57BL6J_5622927	Gm40042	NCBI_Gene:105244434	MGI:5622927	lncRNA gene	predicted gene, 40042
3	pseudogene	50.02967	50.02999	positive	MGI_C57BL6J_5611054	Gm37826	ENSEMBL:ENSMUSG00000104457	MGI:5611054	pseudogene	predicted gene, 37826
3	pseudogene	50.16666	50.16689	negative	MGI_C57BL6J_5610920	Gm37692	ENSEMBL:ENSMUSG00000104349	MGI:5610920	pseudogene	predicted gene, 37692
3	pseudogene	50.25485	50.25544	positive	MGI_C57BL6J_3780515	Gm2345	NCBI_Gene:100039628,ENSEMBL:ENSMUSG00000102167	MGI:3780515	pseudogene	predicted gene 2345
3	gene	50.40028	50.40428	negative	MGI_C57BL6J_5610726	Gm37498	ENSEMBL:ENSMUSG00000103907	MGI:5610726	unclassified gene	predicted gene, 37498
3	gene	50.51640	50.60731	negative	MGI_C57BL6J_3643374	Gm6209	NCBI_Gene:621304,ENSEMBL:ENSMUSG00000102715	MGI:3643374	lncRNA gene	predicted gene 6209
3	gene	50.57519	50.57652	negative	MGI_C57BL6J_1923259	5830415G21Rik	ENSEMBL:ENSMUSG00000102895	MGI:1923259	unclassified gene	RIKEN cDNA 5830415G21 gene
3	pseudogene	50.59799	50.59850	negative	MGI_C57BL6J_5611465	Gm38237	NCBI_Gene:108168851,ENSEMBL:ENSMUSG00000103745	MGI:5611465	pseudogene	predicted gene, 38237
3	gene	50.62435	50.62841	negative	MGI_C57BL6J_5610427	Gm37199	ENSEMBL:ENSMUSG00000104068	MGI:5610427	unclassified gene	predicted gene, 37199
3	gene	50.67970	50.68340	negative	MGI_C57BL6J_5610689	Gm37461	ENSEMBL:ENSMUSG00000104281	MGI:5610689	unclassified gene	predicted gene, 37461
3	gene	50.70690	50.71189	negative	MGI_C57BL6J_5622928	Gm40043	NCBI_Gene:105244435	MGI:5622928	lncRNA gene	predicted gene, 40043
3	gene	50.83858	50.83872	negative	MGI_C57BL6J_5454280	Gm24503	ENSEMBL:ENSMUSG00000089079	MGI:5454280	snoRNA gene	predicted gene, 24503
3	gene	50.88324	50.88889	negative	MGI_C57BL6J_5610776	Gm37548	NCBI_Gene:105244436,ENSEMBL:ENSMUSG00000103012	MGI:5610776	lncRNA gene	predicted gene, 37548
3	gene	50.91889	50.92153	negative	MGI_C57BL6J_5611071	Gm37843	ENSEMBL:ENSMUSG00000102614	MGI:5611071	unclassified gene	predicted gene, 37843
3	gene	50.96656	50.96677	positive	MGI_C57BL6J_2139603	AA672641	NA	NA	unclassified gene	expressed sequence AA672641
3	gene	50.97754	50.97881	negative	MGI_C57BL6J_5610437	Gm37209	ENSEMBL:ENSMUSG00000103652	MGI:5610437	unclassified gene	predicted gene, 37209
3	gene	51.03335	51.04284	negative	MGI_C57BL6J_5594915	Gm35756	NCBI_Gene:102639442	MGI:5594915	lncRNA gene	predicted gene, 35756
3	gene	51.05891	51.08934	negative	MGI_C57BL6J_5579936	Gm29230	NCBI_Gene:102639521,ENSEMBL:ENSMUSG00000102067	MGI:5579936	lncRNA gene	predicted gene 29230
3	gene	51.10366	51.10517	positive	MGI_C57BL6J_5611474	Gm38246	ENSEMBL:ENSMUSG00000103464	MGI:5611474	lncRNA gene	predicted gene, 38246
3	gene	51.12669	51.12894	negative	MGI_C57BL6J_5595050	Gm35891	NCBI_Gene:102639626	MGI:5595050	lncRNA gene	predicted gene, 35891
3	gene	51.21847	51.22033	negative	MGI_C57BL6J_5622929	Gm40044	NCBI_Gene:105244437	MGI:5622929	lncRNA gene	predicted gene, 40044
3	gene	51.22445	51.25165	positive	MGI_C57BL6J_109382	Noct	NCBI_Gene:12457,ENSEMBL:ENSMUSG00000023087	MGI:109382	protein coding gene	nocturnin
3	gene	51.23192	51.23438	positive	MGI_C57BL6J_5611585	Gm38357	ENSEMBL:ENSMUSG00000103313	MGI:5611585	unclassified gene	predicted gene, 38357
3	gene	51.25272	51.34092	negative	MGI_C57BL6J_1916507	Elf2	NCBI_Gene:69257,ENSEMBL:ENSMUSG00000037174	MGI:1916507	protein coding gene	E74-like factor 2
3	gene	51.27676	51.27841	positive	MGI_C57BL6J_1914996	4930577N17Rik	NCBI_Gene:67746,ENSEMBL:ENSMUSG00000087440	MGI:1914996	lncRNA gene	RIKEN cDNA 4930577N17 gene
3	gene	51.29718	51.29724	positive	MGI_C57BL6J_5454059	Gm24282	ENSEMBL:ENSMUSG00000077420	MGI:5454059	miRNA gene	predicted gene, 24282
3	gene	51.30249	51.30290	negative	MGI_C57BL6J_5610627	Gm37399	ENSEMBL:ENSMUSG00000104200	MGI:5610627	unclassified gene	predicted gene, 37399
3	gene	51.35835	51.35842	positive	MGI_C57BL6J_4414019	n-TPtgg7	NCBI_Gene:102467437	MGI:4414019	tRNA gene	nuclear encoded tRNA proline 7 (anticodon TGG)
3	gene	51.35941	51.35948	positive	MGI_C57BL6J_4414007	n-TPagg5	NCBI_Gene:102467366	MGI:4414007	tRNA gene	nuclear encoded tRNA proline 5 (anticodon AGG)
3	pseudogene	51.37022	51.37061	positive	MGI_C57BL6J_5610431	Gm37203	ENSEMBL:ENSMUSG00000103654	MGI:5610431	pseudogene	predicted gene, 37203
3	gene	51.37802	51.38632	positive	MGI_C57BL6J_3779459	Gm5103	NCBI_Gene:329636,ENSEMBL:ENSMUSG00000102544	MGI:3779459	lncRNA gene	predicted gene 5103
3	gene	51.38841	51.39674	negative	MGI_C57BL6J_1914999	Mgarp	NCBI_Gene:67749,ENSEMBL:ENSMUSG00000037161	MGI:1914999	protein coding gene	mitochondria localized glutamic acid rich protein
3	pseudogene	51.40246	51.40320	negative	MGI_C57BL6J_3779852	Gm9442	NCBI_Gene:669130,ENSEMBL:ENSMUSG00000104241	MGI:3779852	pseudogene	predicted gene 9442
3	gene	51.40468	51.40899	negative	MGI_C57BL6J_1913627	Ndufc1	NCBI_Gene:66377,ENSEMBL:ENSMUSG00000037152	MGI:1913627	protein coding gene	NADH:ubiquinone oxidoreductase subunit C1
3	gene	51.41515	51.47651	positive	MGI_C57BL6J_1922088	Naa15	NCBI_Gene:74838,ENSEMBL:ENSMUSG00000063273	MGI:1922088	protein coding gene	N(alpha)-acetyltransferase 15, NatA auxiliary subunit
3	gene	51.42361	51.42372	positive	MGI_C57BL6J_5610874	Gm37646	ENSEMBL:ENSMUSG00000103191	MGI:5610874	unclassified gene	predicted gene, 37646
3	gene	51.48233	51.48483	negative	MGI_C57BL6J_5611388	Gm38160	ENSEMBL:ENSMUSG00000102775	MGI:5611388	unclassified gene	predicted gene, 38160
3	gene	51.48392	51.49623	positive	MGI_C57BL6J_1330805	Rab33b	NCBI_Gene:19338,ENSEMBL:ENSMUSG00000027739	MGI:1330805	protein coding gene	RAB33B, member RAS oncogene family
3	gene	51.48962	51.49282	positive	MGI_C57BL6J_5611196	Gm37968	ENSEMBL:ENSMUSG00000102570	MGI:5611196	unclassified gene	predicted gene, 37968
3	gene	51.51099	51.51430	positive	MGI_C57BL6J_5595167	Gm36008	NCBI_Gene:102639777	MGI:5595167	lncRNA gene	predicted gene, 36008
3	gene	51.51532	51.56088	negative	MGI_C57BL6J_1920501	Setd7	NCBI_Gene:73251,ENSEMBL:ENSMUSG00000037111	MGI:1920501	protein coding gene	SET domain containing (lysine methyltransferase) 7
3	gene	51.55754	51.55965	negative	MGI_C57BL6J_5611428	Gm38200	ENSEMBL:ENSMUSG00000102466	MGI:5611428	unclassified gene	predicted gene, 38200
3	gene	51.55976	51.56712	positive	MGI_C57BL6J_1923230	5031434O11Rik	NCBI_Gene:100039684,ENSEMBL:ENSMUSG00000097885	MGI:1923230	lncRNA gene	RIKEN cDNA 5031434O11 gene
3	pseudogene	51.57111	51.57142	negative	MGI_C57BL6J_5611562	Gm38334	ENSEMBL:ENSMUSG00000104001	MGI:5611562	pseudogene	predicted gene, 38334
3	gene	51.58231	51.58285	positive	MGI_C57BL6J_1918620	5430433H01Rik	ENSEMBL:ENSMUSG00000104075	MGI:1918620	unclassified gene	RIKEN cDNA 5430433H01 gene
3	pseudogene	51.63649	51.63705	negative	MGI_C57BL6J_5611475	Gm38247	NCBI_Gene:108168852,ENSEMBL:ENSMUSG00000104166	MGI:5611475	pseudogene	predicted gene, 38247
3	gene	51.66036	51.68268	positive	MGI_C57BL6J_2448481	Mgst2	NCBI_Gene:211666,ENSEMBL:ENSMUSG00000074604	MGI:2448481	protein coding gene	microsomal glutathione S-transferase 2
3	gene	51.67280	51.67390	positive	MGI_C57BL6J_5610489	Gm37261	ENSEMBL:ENSMUSG00000103527	MGI:5610489	unclassified gene	predicted gene, 37261
3	gene	51.68591	52.10509	negative	MGI_C57BL6J_2389461	Maml3	NCBI_Gene:433586,ENSEMBL:ENSMUSG00000061143	MGI:2389461	protein coding gene	mastermind like transcriptional coactivator 3
3	gene	51.69372	51.69509	positive	MGI_C57BL6J_3642905	Gm10729	ENSEMBL:ENSMUSG00000074603	MGI:3642905	protein coding gene	predicted gene 10729
3	gene	51.70772	51.71225	positive	MGI_C57BL6J_5826440	Gm46803	NCBI_Gene:108168869	MGI:5826440	lncRNA gene	predicted gene, 46803
3	gene	51.75712	51.76209	negative	MGI_C57BL6J_5610570	Gm37342	ENSEMBL:ENSMUSG00000102732	MGI:5610570	unclassified gene	predicted gene, 37342
3	gene	51.81295	51.81931	positive	MGI_C57BL6J_5610457	Gm37229	ENSEMBL:ENSMUSG00000102539	MGI:5610457	lncRNA gene	predicted gene, 37229
3	gene	51.82891	51.82903	positive	MGI_C57BL6J_4422061	n-R5s196	ENSEMBL:ENSMUSG00000065070	MGI:4422061	rRNA gene	nuclear encoded rRNA 5S 196
3	gene	51.82939	51.83040	negative	MGI_C57BL6J_1920491	3110080O07Rik	ENSEMBL:ENSMUSG00000103284	MGI:1920491	unclassified gene	RIKEN cDNA 3110080O07 gene
3	gene	51.86735	51.86856	negative	MGI_C57BL6J_5611228	Gm38000	ENSEMBL:ENSMUSG00000103484	MGI:5611228	unclassified gene	predicted gene, 38000
3	gene	51.87299	51.87584	negative	MGI_C57BL6J_5610903	Gm37675	ENSEMBL:ENSMUSG00000102620	MGI:5610903	unclassified gene	predicted gene, 37675
3	gene	51.88428	51.88689	negative	MGI_C57BL6J_5611480	Gm38252	ENSEMBL:ENSMUSG00000102786	MGI:5611480	unclassified gene	predicted gene, 38252
3	pseudogene	51.90699	51.90882	negative	MGI_C57BL6J_3708672	Gm10728	ENSEMBL:ENSMUSG00000103701	MGI:3708672	pseudogene	predicted gene 10728
3	gene	51.98094	51.99007	positive	MGI_C57BL6J_5012274	Gm20089	ENSEMBL:ENSMUSG00000104161	MGI:5012274	lncRNA gene	predicted gene, 20089
3	gene	51.98763	51.98985	negative	MGI_C57BL6J_5611283	Gm38055	ENSEMBL:ENSMUSG00000102147	MGI:5611283	unclassified gene	predicted gene, 38055
3	gene	51.99134	51.99196	negative	MGI_C57BL6J_5610754	Gm37526	ENSEMBL:ENSMUSG00000103784	MGI:5610754	unclassified gene	predicted gene, 37526
3	gene	52.00074	52.00402	negative	MGI_C57BL6J_5610693	Gm37465	ENSEMBL:ENSMUSG00000102423	MGI:5610693	unclassified gene	predicted gene, 37465
3	gene	52.05729	52.06424	negative	MGI_C57BL6J_2444420	C130089K02Rik	ENSEMBL:ENSMUSG00000104339	MGI:2444420	unclassified gene	RIKEN cDNA C130089K02 gene
3	gene	52.07159	52.07339	negative	MGI_C57BL6J_1921741	5430420F09Rik	ENSEMBL:ENSMUSG00000102808	MGI:1921741	unclassified gene	RIKEN cDNA 5430420F09 gene
3	gene	52.13405	52.22200	negative	MGI_C57BL6J_5610430	Gm37202	ENSEMBL:ENSMUSG00000103655	MGI:5610430	lncRNA gene	predicted gene, 37202
3	gene	52.17108	52.18013	negative	MGI_C57BL6J_5589233	Gm30074	NCBI_Gene:102631843,ENSEMBL:ENSMUSG00000103726	MGI:5589233	lncRNA gene	predicted gene, 30074
3	gene	52.18657	52.18796	positive	MGI_C57BL6J_5611360	Gm38132	ENSEMBL:ENSMUSG00000104055	MGI:5611360	lncRNA gene	predicted gene, 38132
3	gene	52.19825	52.20049	positive	MGI_C57BL6J_5610398	Gm37170	ENSEMBL:ENSMUSG00000103170	MGI:5610398	lncRNA gene	predicted gene, 37170
3	pseudogene	52.23684	52.24694	negative	MGI_C57BL6J_3031232	Olfr1398-ps1	NCBI_Gene:404507,ENSEMBL:ENSMUSG00000102510	MGI:3031232	pseudogene	olfactory receptor 1398, pseudogene 1
3	gene	52.23745	52.25650	positive	MGI_C57BL6J_5589284	Gm30125	NCBI_Gene:102631910	MGI:5589284	lncRNA gene	predicted gene, 30125
3	gene	52.26834	52.35322	positive	MGI_C57BL6J_1890077	Foxo1	NCBI_Gene:56458,ENSEMBL:ENSMUSG00000044167	MGI:1890077	protein coding gene	forkhead box O1
3	gene	52.26843	52.26944	negative	MGI_C57BL6J_5141867	Gm20402	ENSEMBL:ENSMUSG00000092405	MGI:5141867	lncRNA gene	predicted gene 20402
3	gene	52.28224	52.28431	positive	MGI_C57BL6J_5611262	Gm38034	ENSEMBL:ENSMUSG00000102844	MGI:5611262	unclassified gene	predicted gene, 38034
3	pseudogene	52.42535	52.42573	positive	MGI_C57BL6J_5593462	Gm34303	NCBI_Gene:102637513	MGI:5593462	pseudogene	predicted gene, 34303
3	pseudogene	52.42541	52.42565	positive	MGI_C57BL6J_5611326	Gm38098	ENSEMBL:ENSMUSG00000103454	MGI:5611326	pseudogene	predicted gene, 38098
3	gene	52.46717	52.49327	positive	MGI_C57BL6J_5621422	Gm38537	NCBI_Gene:102641152	MGI:5621422	lncRNA gene	predicted gene, 38537
3	gene	52.50277	52.55022	positive	MGI_C57BL6J_5589332	Gm30173	NCBI_Gene:102631981,ENSEMBL:ENSMUSG00000103965	MGI:5589332	lncRNA gene	predicted gene, 30173
3	gene	52.58013	52.58907	positive	MGI_C57BL6J_5622932	Gm40047	NCBI_Gene:105244440	MGI:5622932	lncRNA gene	predicted gene, 40047
3	pseudogene	52.61282	52.61402	positive	MGI_C57BL6J_3704216	Gm10293	NCBI_Gene:100039762,ENSEMBL:ENSMUSG00000070490	MGI:3704216	pseudogene	predicted pseudogene 10293
3	gene	52.64989	52.70971	positive	MGI_C57BL6J_5589394	Gm30235	NCBI_Gene:102632062	MGI:5589394	lncRNA gene	predicted gene, 30235
3	gene	52.72265	52.72275	negative	MGI_C57BL6J_5452575	Gm22798	ENSEMBL:ENSMUSG00000065926	MGI:5452575	snRNA gene	predicted gene, 22798
3	gene	52.73972	52.77666	positive	MGI_C57BL6J_3780614	Gm2447	NCBI_Gene:329639,ENSEMBL:ENSMUSG00000102785	MGI:3780614	lncRNA gene	predicted gene 2447
3	gene	52.78900	52.79781	negative	MGI_C57BL6J_5589451	Gm30292	NCBI_Gene:102632139,ENSEMBL:ENSMUSG00000104109	MGI:5589451	lncRNA gene	predicted gene, 30292
3	gene	52.90676	52.92767	negative	MGI_C57BL6J_5434106	Gm20750	NCBI_Gene:622124,ENSEMBL:ENSMUSG00000104401	MGI:5434106	lncRNA gene	predicted gene, 20750
3	gene	52.93325	52.95628	positive	MGI_C57BL6J_5589510	Gm30351	NCBI_Gene:102632211	MGI:5589510	lncRNA gene	predicted gene, 30351
3	gene	52.95618	52.95789	negative	MGI_C57BL6J_5589561	Gm30402	NCBI_Gene:102632287	MGI:5589561	lncRNA gene	predicted gene, 30402
3	pseudogene	52.96005	52.96037	negative	MGI_C57BL6J_5610235	Gm37007	ENSEMBL:ENSMUSG00000103886	MGI:5610235	pseudogene	predicted gene, 37007
3	gene	52.98188	53.01724	negative	MGI_C57BL6J_1914792	Cog6	NCBI_Gene:67542,ENSEMBL:ENSMUSG00000027742	MGI:1914792	protein coding gene	component of oligomeric golgi complex 6
3	gene	53.03858	53.04176	negative	MGI_C57BL6J_5663038	Gm42901	ENSEMBL:ENSMUSG00000104850	MGI:5663038	lncRNA gene	predicted gene 42901
3	gene	53.04153	53.26168	positive	MGI_C57BL6J_1920048	Lhfp	NCBI_Gene:108927,ENSEMBL:ENSMUSG00000048332	MGI:1920048	protein coding gene	lipoma HMGIC fusion partner
3	gene	53.07216	53.07524	negative	MGI_C57BL6J_5663035	Gm42898	ENSEMBL:ENSMUSG00000104828	MGI:5663035	unclassified gene	predicted gene 42898
3	gene	53.08322	53.08588	positive	MGI_C57BL6J_5663036	Gm42899	ENSEMBL:ENSMUSG00000104687	MGI:5663036	unclassified gene	predicted gene 42899
3	gene	53.09900	53.10318	positive	MGI_C57BL6J_2443940	C130075A20Rik	ENSEMBL:ENSMUSG00000104735	MGI:2443940	unclassified gene	RIKEN cDNA C130075A20 gene
3	gene	53.10967	53.11012	positive	MGI_C57BL6J_5663941	Gm43804	ENSEMBL:ENSMUSG00000104615	MGI:5663941	unclassified gene	predicted gene 43804
3	gene	53.11040	53.11341	negative	MGI_C57BL6J_5663940	Gm43803	ENSEMBL:ENSMUSG00000104968	MGI:5663940	lncRNA gene	predicted gene 43803
3	gene	53.11217	53.11299	positive	MGI_C57BL6J_5663942	Gm43805	ENSEMBL:ENSMUSG00000105971	MGI:5663942	unclassified gene	predicted gene 43805
3	pseudogene	53.34649	53.34723	negative	MGI_C57BL6J_5663609	Gm43472	ENSEMBL:ENSMUSG00000106660	MGI:5663609	pseudogene	predicted gene 43472
3	gene	53.39575	53.39850	positive	MGI_C57BL6J_5622933	Gm40048	NCBI_Gene:105244441	MGI:5622933	lncRNA gene	predicted gene, 40048
3	pseudogene	53.40161	53.42457	negative	MGI_C57BL6J_5663608	Gm43471	NCBI_Gene:108168853,ENSEMBL:ENSMUSG00000105397	MGI:5663608	pseudogene	predicted gene 43471
3	gene	53.44858	53.46333	negative	MGI_C57BL6J_2444520	Nhlrc3	NCBI_Gene:212114,ENSEMBL:ENSMUSG00000042997	MGI:2444520	protein coding gene	NHL repeat containing 3
3	gene	53.45262	53.45805	positive	MGI_C57BL6J_3801870	Gm16206	NCBI_Gene:102632669,ENSEMBL:ENSMUSG00000085174	MGI:3801870	lncRNA gene	predicted gene 16206
3	gene	53.46367	53.48175	positive	MGI_C57BL6J_1919933	Proser1	NCBI_Gene:212127,ENSEMBL:ENSMUSG00000049504	MGI:1919933	protein coding gene	proline and serine rich 1
3	gene	53.48865	53.50850	positive	MGI_C57BL6J_2388072	Stoml3	NCBI_Gene:229277,ENSEMBL:ENSMUSG00000027744	MGI:2388072	protein coding gene	stomatin (Epb7.2)-like 3
3	gene	53.50893	53.51010	positive	MGI_C57BL6J_1924132	6430500D05Rik	ENSEMBL:ENSMUSG00000105481	MGI:1924132	unclassified gene	RIKEN cDNA 6430500D05 gene
3	gene	53.51200	53.51213	positive	MGI_C57BL6J_5453452	Gm23675	ENSEMBL:ENSMUSG00000087936	MGI:5453452	snoRNA gene	predicted gene, 23675
3	gene	53.51394	53.65736	negative	MGI_C57BL6J_2444465	Frem2	NCBI_Gene:242022,ENSEMBL:ENSMUSG00000037016	MGI:2444465	protein coding gene	Fras1 related extracellular matrix protein 2
3	pseudogene	53.66666	53.66739	negative	MGI_C57BL6J_3648425	Gm6073	NCBI_Gene:606547,ENSEMBL:ENSMUSG00000105840	MGI:3648425	pseudogene	predicted gene 6073
3	pseudogene	53.69237	53.69292	negative	MGI_C57BL6J_3649038	Gm6204	NCBI_Gene:621155,ENSEMBL:ENSMUSG00000105879	MGI:3649038	pseudogene	predicted gene 6204
3	gene	53.70304	53.73576	positive	MGI_C57BL6J_5589894	Gm30735	NCBI_Gene:102632743,ENSEMBL:ENSMUSG00000105168	MGI:5589894	lncRNA gene	predicted gene, 30735
3	gene	53.73622	53.73783	positive	MGI_C57BL6J_3642187	Gm10727	ENSEMBL:ENSMUSG00000105444	MGI:3642187	unclassified gene	predicted gene 10727
3	gene	53.75673	53.77295	positive	MGI_C57BL6J_2443105	C820005J03Rik	ENSEMBL:ENSMUSG00000106270	MGI:2443105	lncRNA gene	RIKEN cDNA C820005J03 gene
3	gene	53.84341	53.84351	positive	MGI_C57BL6J_5454628	Gm24851	ENSEMBL:ENSMUSG00000088653	MGI:5454628	snRNA gene	predicted gene, 24851
3	gene	53.84509	53.84528	positive	MGI_C57BL6J_3779200	Gm10985	ENSEMBL:ENSMUSG00000078742	MGI:3779200	protein coding gene	predicted gene 10985
3	gene	53.85338	53.86383	negative	MGI_C57BL6J_1915140	Ufm1	NCBI_Gene:67890,ENSEMBL:ENSMUSG00000027746	MGI:1915140	protein coding gene	ubiquitin-fold modifier 1
3	gene	53.92484	53.94353	positive	MGI_C57BL6J_5590185	Gm31026	NCBI_Gene:102633119,ENSEMBL:ENSMUSG00000106577	MGI:5590185	lncRNA gene	predicted gene, 31026
3	pseudogene	54.02115	54.02195	positive	MGI_C57BL6J_3645533	Gm8109	NCBI_Gene:666444,ENSEMBL:ENSMUSG00000103155	MGI:3645533	pseudogene	predicted gene 8109
3	pseudogene	54.02988	54.03041	positive	MGI_C57BL6J_5010203	Gm18018	NCBI_Gene:100416282,ENSEMBL:ENSMUSG00000105067	MGI:5010203	pseudogene	predicted gene, 18018
3	gene	54.15604	54.31847	positive	MGI_C57BL6J_109525	Trpc4	NCBI_Gene:22066,ENSEMBL:ENSMUSG00000027748	MGI:109525	protein coding gene	transient receptor potential cation channel, subfamily C, member 4
3	gene	54.35927	54.39104	positive	MGI_C57BL6J_1926321	Postn	NCBI_Gene:50706,ENSEMBL:ENSMUSG00000027750	MGI:1926321	protein coding gene	periostin, osteoblast specific factor
3	gene	54.35966	54.36101	negative	MGI_C57BL6J_5590254	Gm31095	NCBI_Gene:102633208	MGI:5590254	lncRNA gene	predicted gene, 31095
3	pseudogene	54.48141	54.48293	positive	MGI_C57BL6J_3645731	Gm5641	NCBI_Gene:434807,ENSEMBL:ENSMUSG00000069014	MGI:3645731	pseudogene	predicted gene 5641
3	gene	54.48856	54.53489	negative	MGI_C57BL6J_5590313	Gm31154	NCBI_Gene:102633293	MGI:5590313	lncRNA gene	predicted gene, 31154
3	gene	54.59055	54.60139	negative	MGI_C57BL6J_5622935	Gm40050	NCBI_Gene:105244443	MGI:5622935	lncRNA gene	predicted gene, 40050
3	gene	54.63144	54.63463	positive	MGI_C57BL6J_5477172	Gm26678	ENSEMBL:ENSMUSG00000097599	MGI:5477172	lncRNA gene	predicted gene, 26678
3	pseudogene	54.63288	54.63457	negative	MGI_C57BL6J_3588285	B020017C02Rik	NCBI_Gene:100503708,ENSEMBL:ENSMUSG00000104831	MGI:3588285	pseudogene	RIKEN cDNA B020017C02 gene
3	gene	54.69276	54.72877	positive	MGI_C57BL6J_1929651	Supt20	NCBI_Gene:56790,ENSEMBL:ENSMUSG00000027751	MGI:1929651	protein coding gene	SPT20 SAGA complex component
3	gene	54.71318	54.71435	negative	MGI_C57BL6J_5439427	Gm21958	ENSEMBL:ENSMUSG00000094487	MGI:5439427	protein coding gene	predicted gene, 21958
3	gene	54.72868	54.73539	negative	MGI_C57BL6J_1916889	Exosc8	NCBI_Gene:69639,ENSEMBL:ENSMUSG00000027752	MGI:1916889	protein coding gene	exosome component 8
3	gene	54.73554	54.75132	positive	MGI_C57BL6J_1913498	Alg5	NCBI_Gene:66248,ENSEMBL:ENSMUSG00000036632	MGI:1913498	protein coding gene	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)
3	gene	54.75545	54.80166	positive	MGI_C57BL6J_1859993	Smad9	NCBI_Gene:55994,ENSEMBL:ENSMUSG00000027796	MGI:1859993	protein coding gene	SMAD family member 9
3	gene	54.80311	54.80779	negative	MGI_C57BL6J_2180854	Rfxap	NCBI_Gene:170767,ENSEMBL:ENSMUSG00000036615	MGI:2180854	protein coding gene	regulatory factor X-associated protein
3	pseudogene	54.80997	54.81140	negative	MGI_C57BL6J_3708673	Gm10254	NCBI_Gene:545524,ENSEMBL:ENSMUSG00000069011	MGI:3708673	pseudogene	predicted gene 10254
3	gene	54.89707	54.91589	negative	MGI_C57BL6J_3607715	Sertm1	NCBI_Gene:329641,ENSEMBL:ENSMUSG00000056306	MGI:3607715	protein coding gene	serine rich and transmembrane domain containing 1
3	gene	54.91602	54.95326	positive	MGI_C57BL6J_5590517	Gm31358	NCBI_Gene:102633562	MGI:5590517	lncRNA gene	predicted gene, 31358
3	gene	55.04547	55.05550	negative	MGI_C57BL6J_108042	Ccna1	NCBI_Gene:12427,ENSEMBL:ENSMUSG00000027793	MGI:108042	protein coding gene	cyclin A1
3	gene	55.05524	55.08400	positive	MGI_C57BL6J_1918220	4931419H13Rik	NCBI_Gene:70970,ENSEMBL:ENSMUSG00000106589	MGI:1918220	lncRNA gene	RIKEN cDNA 4931419H13 gene
3	pseudogene	55.05735	55.05766	negative	MGI_C57BL6J_5663692	Gm43555	ENSEMBL:ENSMUSG00000105977	MGI:5663692	pseudogene	predicted gene 43555
3	gene	55.11207	55.13733	positive	MGI_C57BL6J_2139806	Spg20	NCBI_Gene:229285,ENSEMBL:ENSMUSG00000036580	MGI:2139806	protein coding gene	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
3	gene	55.13734	55.17525	positive	MGI_C57BL6J_2444356	Ccdc169	NCBI_Gene:320604,ENSEMBL:ENSMUSG00000048655	MGI:2444356	protein coding gene	coiled-coil domain containing 169
3	gene	55.16231	55.16243	negative	MGI_C57BL6J_5451806	Gm22029	ENSEMBL:ENSMUSG00000080590	MGI:5451806	miRNA gene	predicted gene, 22029
3	gene	55.18203	55.20996	positive	MGI_C57BL6J_1921684	Sohlh2	NCBI_Gene:74434,ENSEMBL:ENSMUSG00000027794	MGI:1921684	protein coding gene	spermatogenesis and oogenesis specific basic helix-loop-helix 2
3	gene	55.24236	55.53907	positive	MGI_C57BL6J_1330861	Dclk1	NCBI_Gene:13175,ENSEMBL:ENSMUSG00000027797	MGI:1330861	protein coding gene	doublecortin-like kinase 1
3	gene	55.29094	55.29194	positive	MGI_C57BL6J_1924494	9430012M22Rik	NA	NA	unclassified gene	RIKEN cDNA 9430012M22 gene
3	gene	55.30532	55.30542	positive	MGI_C57BL6J_5454909	Gm25132	ENSEMBL:ENSMUSG00000064586	MGI:5454909	snRNA gene	predicted gene, 25132
3	gene	55.33084	55.33297	positive	MGI_C57BL6J_5012002	Gm19817	ENSEMBL:ENSMUSG00000105302	MGI:5012002	unclassified gene	predicted gene, 19817
3	gene	55.35240	55.38079	negative	MGI_C57BL6J_5622936	Gm40051	NCBI_Gene:105244444	MGI:5622936	lncRNA gene	predicted gene, 40051
3	gene	55.37746	55.40312	negative	MGI_C57BL6J_5662746	Gm42609	ENSEMBL:ENSMUSG00000105975	MGI:5662746	lncRNA gene	predicted gene 42609
3	gene	55.39181	55.40420	negative	MGI_C57BL6J_3642047	Gm9831	NCBI_Gene:101056032	MGI:3642047	protein coding gene	predicted gene 9831
3	gene	55.46198	55.47221	negative	MGI_C57BL6J_5439423	Gm21954	ENSEMBL:ENSMUSG00000094962	MGI:5439423	protein coding gene	predicted gene, 21954
3	gene	55.47609	55.48162	negative	MGI_C57BL6J_5590602	Gm31443	NCBI_Gene:102633676	MGI:5590602	lncRNA gene	predicted gene, 31443
3	gene	55.48379	55.48718	positive	MGI_C57BL6J_5662744	Gm42607	ENSEMBL:ENSMUSG00000106354	MGI:5662744	unclassified gene	predicted gene 42607
3	gene	55.51757	55.51959	positive	MGI_C57BL6J_5662745	Gm42608	ENSEMBL:ENSMUSG00000106651	MGI:5662745	unclassified gene	predicted gene 42608
3	gene	55.54045	55.54338	negative	MGI_C57BL6J_5590955	Gm31796	NCBI_Gene:102634140	MGI:5590955	lncRNA gene	predicted gene, 31796
3	gene	55.54354	55.54855	positive	MGI_C57BL6J_5455181	Gm25404	NCBI_Gene:102634218,ENSEMBL:ENSMUSG00000064904	MGI:5455181	snRNA gene	predicted gene, 25404
3	gene	55.57492	55.57727	positive	MGI_C57BL6J_5663685	Gm43548	ENSEMBL:ENSMUSG00000105627	MGI:5663685	unclassified gene	predicted gene 43548
3	gene	55.57811	55.58273	negative	MGI_C57BL6J_5663686	Gm43549	NCBI_Gene:108168870,ENSEMBL:ENSMUSG00000106334	MGI:5663686	lncRNA gene	predicted gene 43549
3	gene	55.62519	56.18427	negative	MGI_C57BL6J_1347075	Nbea	NCBI_Gene:26422,ENSEMBL:ENSMUSG00000027799	MGI:1347075	protein coding gene	neurobeachin
3	gene	55.70589	55.71565	positive	MGI_C57BL6J_5826441	Gm46804	NCBI_Gene:108168871	MGI:5826441	lncRNA gene	predicted gene, 46804
3	gene	55.72593	55.72844	negative	MGI_C57BL6J_3609650	D430004P15Rik	NA	NA	unclassified gene	Riken cDNA D430004P15 gene
3	gene	55.77534	55.78795	negative	MGI_C57BL6J_3698047	9630024C22Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 9630024C22 gene
3	gene	55.78251	55.78529	positive	MGI_C57BL6J_1333773	Mab21l1	NCBI_Gene:17116,ENSEMBL:ENSMUSG00000056947	MGI:1333773	protein coding gene	mab-21-like 1
3	gene	55.83367	55.83446	negative	MGI_C57BL6J_1924979	6720451E02Rik	NA	NA	unclassified gene	RIKEN cDNA 6720451E02 gene
3	pseudogene	55.84710	55.84840	positive	MGI_C57BL6J_1918432	4933417G07Rik	NCBI_Gene:71182,ENSEMBL:ENSMUSG00000106572	MGI:1918432	pseudogene	RIKEN cDNA 4933417G07 gene
3	gene	55.85525	55.85615	negative	MGI_C57BL6J_1926125	B230206L23Rik	NA	NA	unclassified gene	RIKEN cDNA B230206L23 gene
3	gene	55.88327	56.00032	positive	MGI_C57BL6J_5591073	Gm31914	NCBI_Gene:102634293	MGI:5591073	lncRNA gene	predicted gene, 31914
3	gene	55.89031	55.93670	positive	MGI_C57BL6J_5663513	Gm43376	ENSEMBL:ENSMUSG00000104677	MGI:5663513	lncRNA gene	predicted gene 43376
3	gene	55.95678	55.95691	negative	MGI_C57BL6J_5452561	Gm22784	ENSEMBL:ENSMUSG00000077276	MGI:5452561	snoRNA gene	predicted gene, 22784
3	gene	56.01492	56.01717	negative	MGI_C57BL6J_5662977	Gm42840	ENSEMBL:ENSMUSG00000104938	MGI:5662977	unclassified gene	predicted gene 42840
3	gene	56.12316	56.12616	negative	MGI_C57BL6J_5662979	Gm42842	ENSEMBL:ENSMUSG00000106211	MGI:5662979	unclassified gene	predicted gene 42842
3	gene	56.12860	56.13053	negative	MGI_C57BL6J_5662978	Gm42841	ENSEMBL:ENSMUSG00000106528	MGI:5662978	unclassified gene	predicted gene 42841
3	gene	56.16395	56.16757	negative	MGI_C57BL6J_5662980	Gm42843	ENSEMBL:ENSMUSG00000105293	MGI:5662980	unclassified gene	predicted gene 42843
3	gene	56.21791	56.22124	negative	MGI_C57BL6J_5622937	Gm40052	NCBI_Gene:105244445	MGI:5622937	lncRNA gene	predicted gene, 40052
3	gene	56.25590	56.26994	negative	MGI_C57BL6J_5622938	Gm40053	NCBI_Gene:105244446	MGI:5622938	lncRNA gene	predicted gene, 40053
3	gene	56.34703	56.35755	negative	MGI_C57BL6J_5622939	Gm40054	NCBI_Gene:105244447	MGI:5622939	lncRNA gene	predicted gene, 40054
3	gene	56.35224	56.35230	positive	MGI_C57BL6J_102792	Mcptl	NA	NA	protein coding gene	mast cell protease-like
3	gene	56.43600	56.43875	negative	MGI_C57BL6J_5591336	Gm32177	NCBI_Gene:102634641	MGI:5591336	lncRNA gene	predicted gene, 32177
3	gene	56.44528	56.44541	negative	MGI_C57BL6J_5455504	Gm25727	ENSEMBL:ENSMUSG00000077710	MGI:5455504	snoRNA gene	predicted gene, 25727
3	gene	56.69842	56.70506	positive	MGI_C57BL6J_5591396	Gm32237	NCBI_Gene:102634719	MGI:5591396	lncRNA gene	predicted gene, 32237
3	pseudogene	56.82832	56.82884	negative	MGI_C57BL6J_3780790	Gm2622	NCBI_Gene:100040139,ENSEMBL:ENSMUSG00000105113	MGI:3780790	pseudogene	predicted gene 2622
3	gene	56.88806	56.89133	negative	MGI_C57BL6J_3588185	F830104G03Rik	NA	NA	unclassified gene	RIKEN cDNA F830104G03 gene
3	gene	57.05415	57.05428	positive	MGI_C57BL6J_5452046	Gm22269	ENSEMBL:ENSMUSG00000077190	MGI:5452046	snoRNA gene	predicted gene, 22269
3	pseudogene	57.13549	57.13683	negative	MGI_C57BL6J_3805962	Gm8177	NCBI_Gene:666585,ENSEMBL:ENSMUSG00000097366	MGI:3805962	pseudogene	predicted gene 8177
3	gene	57.22772	57.22918	negative	MGI_C57BL6J_1918389	4933408K01Rik	NA	NA	unclassified gene	RIKEN cDNA 4933408K01 gene
3	pseudogene	57.24925	57.24950	positive	MGI_C57BL6J_5663561	Gm43424	ENSEMBL:ENSMUSG00000106286	MGI:5663561	pseudogene	predicted gene 43424
3	pseudogene	57.27174	57.27237	negative	MGI_C57BL6J_5010845	Gm18660	NCBI_Gene:100417512,ENSEMBL:ENSMUSG00000104534	MGI:5010845	pseudogene	predicted gene, 18660
3	gene	57.28561	57.30199	negative	MGI_C57BL6J_104678	Tm4sf1	NCBI_Gene:17112,ENSEMBL:ENSMUSG00000027800	MGI:104678	protein coding gene	transmembrane 4 superfamily member 1
3	pseudogene	57.36225	57.36361	positive	MGI_C57BL6J_3646382	Gm5276	NCBI_Gene:383862,ENSEMBL:ENSMUSG00000105452	MGI:3646382	pseudogene	predicted gene 5276
3	gene	57.37929	57.39455	negative	MGI_C57BL6J_5591526	Gm32367	NCBI_Gene:102634892	MGI:5591526	lncRNA gene	predicted gene, 32367
3	gene	57.42531	57.44168	positive	MGI_C57BL6J_2385173	Tm4sf4	NCBI_Gene:229302,ENSEMBL:ENSMUSG00000027801	MGI:2385173	protein coding gene	transmembrane 4 superfamily member 4
3	gene	57.45564	57.57591	negative	MGI_C57BL6J_1917649	Wwtr1	NCBI_Gene:97064,ENSEMBL:ENSMUSG00000027803	MGI:1917649	protein coding gene	WW domain containing transcription regulator 1
3	pseudogene	57.52655	57.53048	positive	MGI_C57BL6J_3802068	Gm16016	NCBI_Gene:105244448,ENSEMBL:ENSMUSG00000083538	MGI:3802068	pseudogene	predicted gene 16016
3	gene	57.61259	57.62736	negative	MGI_C57BL6J_5477165	Gm26671	NCBI_Gene:102635136,ENSEMBL:ENSMUSG00000097339	MGI:5477165	lncRNA gene	predicted gene, 26671
3	gene	57.61661	57.61672	positive	MGI_C57BL6J_5530798	Mir6377	miRBase:MI0021907,NCBI_Gene:102465197,ENSEMBL:ENSMUSG00000098401	MGI:5530798	miRNA gene	microRNA 6377
3	gene	57.63688	57.64084	negative	MGI_C57BL6J_5663574	Gm43437	ENSEMBL:ENSMUSG00000104965	MGI:5663574	unclassified gene	predicted gene 43437
3	gene	57.63768	57.64073	positive	MGI_C57BL6J_5826442	Gm46805	NCBI_Gene:108168872	MGI:5826442	lncRNA gene	predicted gene, 46805
3	gene	57.64435	57.65172	negative	MGI_C57BL6J_1098806	Commd2	NCBI_Gene:52245,ENSEMBL:ENSMUSG00000036513	MGI:1098806	protein coding gene	COMM domain containing 2
3	gene	57.65440	57.65558	negative	MGI_C57BL6J_2140033	BB187690	ENSEMBL:ENSMUSG00000105389	MGI:2140033	unclassified gene	expressed sequence BB187690
3	gene	57.65739	57.69280	negative	MGI_C57BL6J_2685256	Ankub1	NCBI_Gene:242037,ENSEMBL:ENSMUSG00000074591	MGI:2685256	protein coding gene	ankrin repeat and ubiquitin domain containing 1
3	gene	57.69618	57.69748	negative	MGI_C57BL6J_5663235	Gm43098	ENSEMBL:ENSMUSG00000106635	MGI:5663235	unclassified gene	predicted gene 43098
3	pseudogene	57.71777	57.71832	negative	MGI_C57BL6J_3648319	Gm6394	NCBI_Gene:623114,ENSEMBL:ENSMUSG00000104623	MGI:3648319	pseudogene	predicted gene 6394
3	gene	57.73604	57.83543	positive	MGI_C57BL6J_1346341	Rnf13	NCBI_Gene:24017,ENSEMBL:ENSMUSG00000036503	MGI:1346341	protein coding gene	ring finger protein 13
3	pseudogene	57.76582	57.76667	negative	MGI_C57BL6J_3780052	Gm9645	NCBI_Gene:675537,ENSEMBL:ENSMUSG00000106421	MGI:3780052	pseudogene	predicted gene 9645
3	pseudogene	57.80976	57.81027	negative	MGI_C57BL6J_5010136	Gm17951	NCBI_Gene:100416165,ENSEMBL:ENSMUSG00000106006	MGI:5010136	pseudogene	predicted gene, 17951
3	gene	57.82159	57.82240	positive	MGI_C57BL6J_1925970	D530035G10Rik	NA	NA	unclassified gene	RIKEN cDNA D530035G10 gene
3	gene	57.84190	57.84808	negative	MGI_C57BL6J_97550	Pfn2	NCBI_Gene:18645,ENSEMBL:ENSMUSG00000027805	MGI:97550	protein coding gene	profilin 2
3	gene	57.92209	57.92219	negative	MGI_C57BL6J_5454308	Gm24531	ENSEMBL:ENSMUSG00000088570	MGI:5454308	snRNA gene	predicted gene, 24531
3	pseudogene	57.94292	57.94315	positive	MGI_C57BL6J_5662648	Gm42511	ENSEMBL:ENSMUSG00000104730	MGI:5662648	pseudogene	predicted gene 42511
3	gene	57.94911	57.97883	positive	MGI_C57BL6J_5591912	Gm32753	NCBI_Gene:102635402	MGI:5591912	lncRNA gene	predicted gene, 32753
3	gene	57.95198	58.03171	negative	MGI_C57BL6J_5622940	Gm40055	NCBI_Gene:105244449,ENSEMBL:ENSMUSG00000105003	MGI:5622940	lncRNA gene	predicted gene, 40055
3	pseudogene	57.96219	57.96337	positive	MGI_C57BL6J_5011052	Gm18867	NCBI_Gene:100417858,ENSEMBL:ENSMUSG00000106246	MGI:5011052	pseudogene	predicted gene, 18867
3	gene	58.07972	58.08183	positive	MGI_C57BL6J_5662650	Gm42513	ENSEMBL:ENSMUSG00000105065	MGI:5662650	unclassified gene	predicted gene 42513
3	gene	58.08960	58.16235	positive	MGI_C57BL6J_5622941	Gm40056	NCBI_Gene:105244450	MGI:5622941	lncRNA gene	predicted gene, 40056
3	pseudogene	58.10256	58.10430	negative	MGI_C57BL6J_3643179	Gm5537	NCBI_Gene:433594,ENSEMBL:ENSMUSG00000069008	MGI:3643179	pseudogene	predicted gene 5537
3	gene	58.11705	58.16762	positive	MGI_C57BL6J_1925506	4921539H07Rik	ENSEMBL:ENSMUSG00000104586	MGI:1925506	lncRNA gene	RIKEN cDNA 4921539H07 gene
3	gene	58.14171	58.16381	negative	MGI_C57BL6J_1915100	1700007F19Rik	NCBI_Gene:67850,ENSEMBL:ENSMUSG00000100666	MGI:1915100	lncRNA gene	RIKEN cDNA 1700007F19 gene
3	gene	58.21192	58.21337	positive	MGI_C57BL6J_5622942	Gm40057	NCBI_Gene:105244451	MGI:5622942	lncRNA gene	predicted gene, 40057
3	gene	58.29025	58.29036	negative	MGI_C57BL6J_5455943	Gm26166	ENSEMBL:ENSMUSG00000065722	MGI:5455943	snRNA gene	predicted gene, 26166
3	gene	58.30186	58.31762	positive	MGI_C57BL6J_5592006	Gm32847	NCBI_Gene:102635539	MGI:5592006	lncRNA gene	predicted gene, 32847
3	pseudogene	58.31494	58.31531	negative	MGI_C57BL6J_5663867	Gm43730	ENSEMBL:ENSMUSG00000106176	MGI:5663867	pseudogene	predicted gene 43730
3	pseudogene	58.40465	58.40512	positive	MGI_C57BL6J_5012313	Gm20128	NCBI_Gene:100504238,ENSEMBL:ENSMUSG00000105154	MGI:5012313	pseudogene	predicted gene, 20128
3	gene	58.41472	58.46679	positive	MGI_C57BL6J_1919283	Tsc22d2	NCBI_Gene:72033,ENSEMBL:ENSMUSG00000027806	MGI:1919283	protein coding gene	TSC22 domain family, member 2
3	gene	58.43268	58.43301	positive	MGI_C57BL6J_1338064	Gdap9	NA	NA	unclassified gene	ganglioside-induced differentiation-associated-protein 9
3	gene	58.51982	58.52589	negative	MGI_C57BL6J_92638	Serp1	NCBI_Gene:28146,ENSEMBL:ENSMUSG00000027808	MGI:92638	protein coding gene	stress-associated endoplasmic reticulum protein 1
3	gene	58.52582	58.55750	positive	MGI_C57BL6J_1098684	Eif2a	NCBI_Gene:229317,ENSEMBL:ENSMUSG00000027810	MGI:1098684	protein coding gene	eukaryotic translation initiation factor 2A
3	gene	58.52693	58.52812	positive	MGI_C57BL6J_1925148	6720482G16Rik	ENSEMBL:ENSMUSG00000106553	MGI:1925148	unclassified gene	RIKEN cDNA 6720482G16 gene
3	gene	58.57664	58.59354	positive	MGI_C57BL6J_1916477	Selenot	NCBI_Gene:69227,ENSEMBL:ENSMUSG00000075700	MGI:1916477	protein coding gene	selenoprotein T
3	gene	58.61630	58.63721	negative	MGI_C57BL6J_3588212	Erich6	NCBI_Gene:545527,ENSEMBL:ENSMUSG00000070471	MGI:3588212	protein coding gene	glutamate rich 6
3	gene	58.63671	58.63749	positive	MGI_C57BL6J_5826443	Gm46806	NCBI_Gene:108168873	MGI:5826443	lncRNA gene	predicted gene, 46806
3	pseudogene	58.65204	58.65404	positive	MGI_C57BL6J_3779790	Gm8234	NCBI_Gene:666680,ENSEMBL:ENSMUSG00000105021	MGI:3779790	pseudogene	predicted gene 8234
3	pseudogene	58.66547	58.66664	negative	MGI_C57BL6J_2139888	AU022133	NCBI_Gene:100417266,ENSEMBL:ENSMUSG00000105336	MGI:2139888	pseudogene	expressed sequence AU022133
3	gene	58.67494	58.69244	negative	MGI_C57BL6J_108062	Siah2	NCBI_Gene:20439,ENSEMBL:ENSMUSG00000036432	MGI:108062	protein coding gene	siah E3 ubiquitin protein ligase 2
3	gene	58.69259	58.79733	positive	MGI_C57BL6J_1923132	4930593A02Rik	NCBI_Gene:71301,ENSEMBL:ENSMUSG00000097725	MGI:1923132	lncRNA gene	RIKEN cDNA 4930593A02 gene
3	gene	58.69756	58.69867	positive	MGI_C57BL6J_1925070	A930028O11Rik	ENSEMBL:ENSMUSG00000105226	MGI:1925070	unclassified gene	RIKEN cDNA A930028O11 gene
3	pseudogene	58.76149	58.76275	negative	MGI_C57BL6J_5592251	Gm33092	NCBI_Gene:102635856	MGI:5592251	pseudogene	predicted gene, 33092
3	pseudogene	58.78841	58.82231	negative	MGI_C57BL6J_2140018	Mindy4b-ps	NCBI_Gene:100040293,ENSEMBL:ENSMUSG00000101860	MGI:2140018	pseudogene	MINDY lysine 48 deubiquitinase 4B, pseudogene
3	gene	58.82499	58.83590	positive	MGI_C57BL6J_5622944	Gm40059	NCBI_Gene:105244453	MGI:5622944	lncRNA gene	predicted gene, 40059
3	gene	58.84210	58.86675	positive	MGI_C57BL6J_5622945	Gm40060	NCBI_Gene:105244454	MGI:5622945	lncRNA gene	predicted gene, 40060
3	gene	58.84403	58.88534	negative	MGI_C57BL6J_2388124	Clrn1	NCBI_Gene:229320,ENSEMBL:ENSMUSG00000043850	MGI:2388124	protein coding gene	clarin 1
3	gene	58.97563	58.97573	positive	MGI_C57BL6J_5452268	Gm22491	ENSEMBL:ENSMUSG00000087815	MGI:5452268	snRNA gene	predicted gene, 22491
3	gene	58.97886	58.97903	negative	MGI_C57BL6J_5455349	Gm25572	ENSEMBL:ENSMUSG00000088152	MGI:5455349	snRNA gene	predicted gene, 25572
3	pseudogene	58.98713	58.98786	positive	MGI_C57BL6J_3642685	Rpl13-ps6	NCBI_Gene:100040416,ENSEMBL:ENSMUSG00000059776	MGI:3642685	pseudogene	ribosomal protein L13, pseudogene 6
3	gene	59.00162	59.00169	positive	MGI_C57BL6J_5531175	Gm27793	ENSEMBL:ENSMUSG00000099052	MGI:5531175	unclassified non-coding RNA gene	predicted gene, 27793
3	gene	59.00247	59.00616	negative	MGI_C57BL6J_5663707	Gm43570	ENSEMBL:ENSMUSG00000105945	MGI:5663707	lncRNA gene	predicted gene 43570
3	gene	59.00559	59.31868	positive	MGI_C57BL6J_2139916	Med12l	NCBI_Gene:329650,ENSEMBL:ENSMUSG00000056476	MGI:2139916	protein coding gene	mediator complex subunit 12-like
3	gene	59.09645	59.10182	negative	MGI_C57BL6J_2442043	Gpr171	NCBI_Gene:229323,ENSEMBL:ENSMUSG00000050075	MGI:2442043	protein coding gene	G protein-coupled receptor 171
3	gene	59.11386	59.15362	negative	MGI_C57BL6J_2155705	P2ry14	NCBI_Gene:140795,ENSEMBL:ENSMUSG00000036381	MGI:2155705	protein coding gene	purinergic receptor P2Y, G-protein coupled, 14
3	gene	59.14630	59.15363	negative	MGI_C57BL6J_2444074	F630111L10Rik	NCBI_Gene:320463	MGI:2444074	lncRNA gene	RIKEN cDNA F630111L10 gene
3	gene	59.17890	59.19547	negative	MGI_C57BL6J_1934133	Gpr87	NCBI_Gene:84111,ENSEMBL:ENSMUSG00000051431	MGI:1934133	protein coding gene	G protein-coupled receptor 87
3	gene	59.20789	59.21088	negative	MGI_C57BL6J_1921441	P2ry13	NCBI_Gene:74191,ENSEMBL:ENSMUSG00000036362	MGI:1921441	protein coding gene	purinergic receptor P2Y, G-protein coupled 13
3	gene	59.21627	59.26301	negative	MGI_C57BL6J_1918089	P2ry12	NCBI_Gene:70839,ENSEMBL:ENSMUSG00000036353	MGI:1918089	protein coding gene	purinergic receptor P2Y, G-protein coupled 12
3	gene	59.26979	59.27131	positive	MGI_C57BL6J_5663726	Gm43589	ENSEMBL:ENSMUSG00000104550	MGI:5663726	unclassified gene	predicted gene 43589
3	gene	59.31674	59.34444	negative	MGI_C57BL6J_1923481	Igsf10	NCBI_Gene:242050,ENSEMBL:ENSMUSG00000036334	MGI:1923481	protein coding gene	immunoglobulin superfamily, member 10
3	gene	59.34427	59.35117	positive	MGI_C57BL6J_5611414	Gm38186	ENSEMBL:ENSMUSG00000103668	MGI:5611414	lncRNA gene	predicted gene, 38186
3	pseudogene	59.42453	59.42476	positive	MGI_C57BL6J_5610943	Gm37715	ENSEMBL:ENSMUSG00000102247	MGI:5610943	pseudogene	predicted gene, 37715
3	pseudogene	59.43154	59.43335	positive	MGI_C57BL6J_3648019	Gm8276	NCBI_Gene:666756,ENSEMBL:ENSMUSG00000102550	MGI:3648019	pseudogene	predicted gene 8276
3	pseudogene	59.46967	59.47409	negative	MGI_C57BL6J_5611516	Gm38288	ENSEMBL:ENSMUSG00000103211	MGI:5611516	pseudogene	predicted gene, 38288
3	gene	59.47493	59.47500	negative	MGI_C57BL6J_4414092	n-TVcac1	NCBI_Gene:102467620	MGI:4414092	tRNA gene	nuclear encoded tRNA valine 1 (anticodon CAC)
3	pseudogene	59.48302	59.48329	positive	MGI_C57BL6J_5610999	Gm37771	ENSEMBL:ENSMUSG00000104038	MGI:5610999	pseudogene	predicted gene, 37771
3	pseudogene	59.50558	59.53523	negative	MGI_C57BL6J_3644725	Gm4856	NCBI_Gene:229330,ENSEMBL:ENSMUSG00000103598	MGI:3644725	pseudogene	predicted gene 4856
3	pseudogene	59.60245	59.63576	negative	MGI_C57BL6J_3644280	Gm5709	NCBI_Gene:435732,ENSEMBL:ENSMUSG00000095128	MGI:3644280	pseudogene	predicted gene 5709
3	gene	59.66286	59.66528	positive	MGI_C57BL6J_5611154	Gm37926	ENSEMBL:ENSMUSG00000102480	MGI:5611154	unclassified gene	predicted gene, 37926
3	gene	59.72979	59.75240	positive	MGI_C57BL6J_3779495	Aadacl2fm2	NCBI_Gene:433597,ENSEMBL:ENSMUSG00000090527	MGI:3779495	protein coding gene	AADACL2 family member 2
3	pseudogene	59.73675	59.73686	negative	MGI_C57BL6J_5611436	Gm38208	ENSEMBL:ENSMUSG00000104471	MGI:5611436	pseudogene	predicted gene, 38208
3	pseudogene	59.73718	59.73732	negative	MGI_C57BL6J_5610807	Gm37579	ENSEMBL:ENSMUSG00000102390	MGI:5610807	pseudogene	predicted gene, 37579
3	pseudogene	59.76721	59.76891	positive	MGI_C57BL6J_3644451	Gm5539	NCBI_Gene:433598,ENSEMBL:ENSMUSG00000103986	MGI:3644451	pseudogene	predicted gene 5539
3	gene	59.77781	59.84682	positive	MGI_C57BL6J_1921922	4930449A18Rik	ENSEMBL:ENSMUSG00000074589	MGI:1921922	protein coding gene	RIKEN cDNA 4930449A18 gene
3	pseudogene	59.78322	59.78863	negative	MGI_C57BL6J_3780925	Gm2756	NCBI_Gene:100040407,ENSEMBL:ENSMUSG00000102757	MGI:3780925	pseudogene	predicted gene 2756
3	gene	59.83837	59.84682	positive	MGI_C57BL6J_4361133	Gm16527	NCBI_Gene:669780	MGI:4361133	protein coding gene	predicted gene, 16527
3	gene	59.86105	59.87731	positive	MGI_C57BL6J_3643798	Aadacl2fm3	NCBI_Gene:666803,ENSEMBL:ENSMUSG00000095522	MGI:3643798	protein coding gene	AADACL2 family member 3
3	gene	59.92521	59.93795	positive	MGI_C57BL6J_3028051	Aadacl2fm1	NCBI_Gene:229333,ENSEMBL:ENSMUSG00000036951	MGI:3028051	protein coding gene	AADACL2 family member 1
3	pseudogene	59.95231	59.97359	positive	MGI_C57BL6J_3819177	Gm9696	NCBI_Gene:676914,ENSEMBL:ENSMUSG00000070465	MGI:3819177	pseudogene	predicted gene 9696
3	gene	60.00674	60.02542	positive	MGI_C57BL6J_3646333	Aadacl2	NCBI_Gene:639634,ENSEMBL:ENSMUSG00000091376	MGI:3646333	protein coding gene	arylacetamide deacetylase like 2
3	pseudogene	60.02036	60.02087	negative	MGI_C57BL6J_5010612	Gm18427	NCBI_Gene:100417154,ENSEMBL:ENSMUSG00000103177	MGI:5010612	pseudogene	predicted gene, 18427
3	gene	60.02572	60.04016	positive	MGI_C57BL6J_1915008	Aadac	NCBI_Gene:67758,ENSEMBL:ENSMUSG00000027761	MGI:1915008	protein coding gene	arylacetamide deacetylase
3	gene	60.08187	60.08757	positive	MGI_C57BL6J_1934135	Sucnr1	NCBI_Gene:84112,ENSEMBL:ENSMUSG00000027762	MGI:1934135	protein coding gene	succinate receptor 1
3	gene	60.12764	60.12775	negative	MGI_C57BL6J_5454159	Gm24382	ENSEMBL:ENSMUSG00000084647	MGI:5454159	snRNA gene	predicted gene, 24382
3	gene	60.29342	60.30941	negative	MGI_C57BL6J_5592809	Gm33650	NCBI_Gene:102636642	MGI:5592809	lncRNA gene	predicted gene, 33650
3	pseudogene	60.34219	60.34309	negative	MGI_C57BL6J_3779880	Tgif1-ps	NCBI_Gene:669823,ENSEMBL:ENSMUSG00000107270	MGI:3779880	pseudogene	TGFB-induced factor homeobox 1, pseudogene
3	gene	60.47279	60.62975	positive	MGI_C57BL6J_1928482	Mbnl1	NCBI_Gene:56758,ENSEMBL:ENSMUSG00000027763	MGI:1928482	protein coding gene	muscleblind like splicing factor 1
3	gene	60.53575	60.53974	positive	MGI_C57BL6J_5610817	Gm37589	ENSEMBL:ENSMUSG00000104235	MGI:5610817	unclassified gene	predicted gene, 37589
3	gene	60.57770	60.58136	positive	MGI_C57BL6J_5012001	Gm19816	NA	NA	unclassified gene	predicted gene%2c 19816
3	gene	60.60438	60.60776	positive	MGI_C57BL6J_5610716	Gm37488	ENSEMBL:ENSMUSG00000104125	MGI:5610716	unclassified gene	predicted gene, 37488
3	pseudogene	60.73763	60.73779	negative	MGI_C57BL6J_5611508	Gm38280	ENSEMBL:ENSMUSG00000104337	MGI:5611508	pseudogene	predicted gene, 38280
3	pseudogene	60.76958	60.77164	negative	MGI_C57BL6J_5592866	Gm33707	NCBI_Gene:102636711,ENSEMBL:ENSMUSG00000102298	MGI:5592866	pseudogene	predicted gene, 33707
3	gene	60.78148	61.00379	negative	MGI_C57BL6J_5610263	Gm37035	NCBI_Gene:105244455,ENSEMBL:ENSMUSG00000102564	MGI:5610263	lncRNA gene	predicted gene, 37035
3	gene	60.78836	60.79473	positive	MGI_C57BL6J_5611554	Gm38326	NCBI_Gene:102642162,ENSEMBL:ENSMUSG00000103587	MGI:5611554	lncRNA gene	predicted gene, 38326
3	pseudogene	60.86071	60.86109	positive	MGI_C57BL6J_5610213	Gm36985	ENSEMBL:ENSMUSG00000102490	MGI:5610213	pseudogene	predicted gene, 36985
3	pseudogene	60.87700	60.87884	positive	MGI_C57BL6J_3644852	Gm8325	NCBI_Gene:666853,ENSEMBL:ENSMUSG00000027694	MGI:3644852	pseudogene	predicted pseudogene 8325
3	gene	61.00279	61.00898	positive	MGI_C57BL6J_105049	P2ry1	NCBI_Gene:18441,ENSEMBL:ENSMUSG00000027765	MGI:105049	protein coding gene	purinergic receptor P2Y, G-protein coupled 1
3	pseudogene	61.29116	61.29145	negative	MGI_C57BL6J_5610947	Gm37719	ENSEMBL:ENSMUSG00000102242	MGI:5610947	pseudogene	predicted gene, 37719
3	pseudogene	61.32849	61.32923	negative	MGI_C57BL6J_5012086	Gm19901	NCBI_Gene:100503798,ENSEMBL:ENSMUSG00000102667	MGI:5012086	pseudogene	predicted gene, 19901
3	gene	61.35855	61.36190	negative	MGI_C57BL6J_5610924	Gm37696	ENSEMBL:ENSMUSG00000103473	MGI:5610924	lncRNA gene	predicted gene, 37696
3	gene	61.36164	61.36870	positive	MGI_C57BL6J_1921262	Rap2b	NCBI_Gene:74012,ENSEMBL:ENSMUSG00000036894	MGI:1921262	protein coding gene	RAP2B, member of RAS oncogene family
3	gene	61.36225	61.36595	negative	MGI_C57BL6J_3697707	B430305J03Rik	ENSEMBL:ENSMUSG00000053706	MGI:3697707	protein coding gene	RIKEN cDNA B430305J03 gene
3	gene	61.39215	61.41303	positive	MGI_C57BL6J_5622946	Gm40061	NCBI_Gene:105244456	MGI:5622946	lncRNA gene	predicted gene, 40061
3	pseudogene	61.46166	61.46288	negative	MGI_C57BL6J_3643135	Gm8349	NCBI_Gene:666891,ENSEMBL:ENSMUSG00000098208	MGI:3643135	pseudogene	predicted gene 8349
3	pseudogene	62.06754	62.06979	negative	MGI_C57BL6J_3780107	Gm9700	NCBI_Gene:676965,ENSEMBL:ENSMUSG00000104489	MGI:3780107	pseudogene	predicted gene 9700
3	gene	62.12321	62.12356	positive	MGI_C57BL6J_5610632	Gm37404	ENSEMBL:ENSMUSG00000103322	MGI:5610632	unclassified gene	predicted gene, 37404
3	gene	62.33752	62.34053	negative	MGI_C57BL6J_3704218	9330121J05Rik	ENSEMBL:ENSMUSG00000103502	MGI:3704218	lncRNA gene	RIKEN cDNA 9330121J05 gene
3	gene	62.33834	62.46222	positive	MGI_C57BL6J_1918053	Arhgef26	NCBI_Gene:622434,ENSEMBL:ENSMUSG00000036885	MGI:1918053	protein coding gene	Rho guanine nucleotide exchange factor (GEF) 26
3	gene	62.34139	62.35052	negative	MGI_C57BL6J_5593082	Gm33923	NCBI_Gene:102637008	MGI:5593082	lncRNA gene	predicted gene, 33923
3	gene	62.46801	62.50703	negative	MGI_C57BL6J_1919412	Dhx36	NCBI_Gene:72162,ENSEMBL:ENSMUSG00000027770	MGI:1919412	protein coding gene	DEAH (Asp-Glu-Ala-His) box polypeptide 36
3	gene	62.52908	62.60544	negative	MGI_C57BL6J_2443628	Gpr149	NCBI_Gene:229357,ENSEMBL:ENSMUSG00000043441	MGI:2443628	protein coding gene	G protein-coupled receptor 149
3	gene	62.60493	62.76393	positive	MGI_C57BL6J_5593207	Gm34048	NCBI_Gene:102637165	MGI:5593207	lncRNA gene	predicted gene, 34048
3	pseudogene	62.76144	62.76202	positive	MGI_C57BL6J_5010567	Gm18382	NCBI_Gene:100417044,ENSEMBL:ENSMUSG00000103764	MGI:5010567	pseudogene	predicted gene, 18382
3	gene	62.77198	62.86064	positive	MGI_C57BL6J_5622947	Gm40062	NCBI_Gene:105244457	MGI:5622947	lncRNA gene	predicted gene, 40062
3	gene	62.86768	62.88900	positive	MGI_C57BL6J_5622948	Gm40063	NCBI_Gene:105244458	MGI:5622948	lncRNA gene	predicted gene, 40063
3	pseudogene	62.92376	62.92426	negative	MGI_C57BL6J_3780108	Gm9701	NCBI_Gene:676984,ENSEMBL:ENSMUSG00000063001	MGI:3780108	pseudogene	predicted gene 9701
3	gene	63.15222	63.15236	positive	MGI_C57BL6J_5452210	Gm22433	ENSEMBL:ENSMUSG00000089175	MGI:5452210	snoRNA gene	predicted gene, 22433
3	pseudogene	63.17311	63.17386	negative	MGI_C57BL6J_3645001	Gm8388	NCBI_Gene:666967,ENSEMBL:ENSMUSG00000102270	MGI:3645001	pseudogene	predicted gene 8388
3	gene	63.23282	63.24545	negative	MGI_C57BL6J_5622949	Gm40064	NCBI_Gene:105244459	MGI:5622949	lncRNA gene	predicted gene, 40064
3	gene	63.24154	63.38603	positive	MGI_C57BL6J_97004	Mme	NCBI_Gene:17380,ENSEMBL:ENSMUSG00000027820	MGI:97004	protein coding gene	membrane metallo endopeptidase
3	gene	63.43925	63.45790	positive	MGI_C57BL6J_5593399	Gm34240	NCBI_Gene:102637430,ENSEMBL:ENSMUSG00000104336	MGI:5593399	lncRNA gene	predicted gene, 34240
3	gene	63.48110	63.48391	negative	MGI_C57BL6J_5593461	Strit1	NCBI_Gene:102637511,ENSEMBL:ENSMUSG00000103476	MGI:5593461	protein coding gene	small transmembrane regulator of ion transport 1
3	gene	63.48388	63.48437	positive	MGI_C57BL6J_5610507	Gm37279	ENSEMBL:ENSMUSG00000102883	MGI:5610507	unclassified gene	predicted gene, 37279
3	gene	63.48899	63.48910	positive	MGI_C57BL6J_5454723	Gm24946	ENSEMBL:ENSMUSG00000088957	MGI:5454723	snRNA gene	predicted gene, 24946
3	gene	63.69620	63.89972	negative	MGI_C57BL6J_2683547	Plch1	NCBI_Gene:269437,ENSEMBL:ENSMUSG00000036834	MGI:2683547	protein coding gene	phospholipase C, eta 1
3	gene	63.77021	63.77031	positive	MGI_C57BL6J_5453277	Gm23500	ENSEMBL:ENSMUSG00000088360	MGI:5453277	snRNA gene	predicted gene, 23500
3	gene	63.79610	63.83685	positive	MGI_C57BL6J_5826444	Gm46807	NCBI_Gene:108168874	MGI:5826444	lncRNA gene	predicted gene, 46807
3	pseudogene	63.82579	63.82644	positive	MGI_C57BL6J_3802047	Gm16162	ENSEMBL:ENSMUSG00000090131	MGI:3802047	pseudogene	predicted gene 16162
3	pseudogene	63.84312	63.84407	positive	MGI_C57BL6J_3801947	Gm16129	ENSEMBL:ENSMUSG00000085290	MGI:3801947	pseudogene	predicted gene 16129
3	pseudogene	63.90543	63.90573	positive	MGI_C57BL6J_5593538	Gm34379	NCBI_Gene:102637617,ENSEMBL:ENSMUSG00000103905	MGI:5593538	pseudogene	predicted gene, 34379
3	gene	63.91468	63.92947	negative	MGI_C57BL6J_3607716	E130311K13Rik	NCBI_Gene:329659,ENSEMBL:ENSMUSG00000048581	MGI:3607716	protein coding gene	RIKEN cDNA E130311K13 gene
3	gene	63.93351	63.96477	negative	MGI_C57BL6J_1332247	Slc33a1	NCBI_Gene:11416,ENSEMBL:ENSMUSG00000027822	MGI:1332247	protein coding gene	solute carrier family 33 (acetyl-CoA transporter), member 1
3	gene	63.96363	63.96866	positive	MGI_C57BL6J_5477344	Gm26850	ENSEMBL:ENSMUSG00000097724	MGI:5477344	lncRNA gene	predicted gene, 26850
3	gene	63.96482	64.02258	positive	MGI_C57BL6J_2448526	Gmps	NCBI_Gene:229363,ENSEMBL:ENSMUSG00000027823	MGI:2448526	protein coding gene	guanine monophosphate synthetase
3	pseudogene	64.05303	64.05561	negative	MGI_C57BL6J_3757653	Vmn2r-ps3	NCBI_Gene:100124546,ENSEMBL:ENSMUSG00000090303	MGI:3757653	pseudogene	vomeronasal 2, receptor, pseudogene 3
3	gene	64.07977	64.22085	positive	MGI_C57BL6J_3645892	Vmn2r1	NCBI_Gene:56544,ENSEMBL:ENSMUSG00000027824	MGI:3645892	protein coding gene	vomeronasal 2, receptor 1
3	gene	64.10963	64.10974	positive	MGI_C57BL6J_5451942	Gm22165	ENSEMBL:ENSMUSG00000089039	MGI:5451942	snRNA gene	predicted gene, 22165
3	gene	64.11528	64.17092	negative	MGI_C57BL6J_3757666	Vmn2r2	NCBI_Gene:100125586,ENSEMBL:ENSMUSG00000043897	MGI:3757666	protein coding gene	vomeronasal 2, receptor 2
3	pseudogene	64.16339	64.16385	positive	MGI_C57BL6J_3779465	Gm5139	NCBI_Gene:380739,ENSEMBL:ENSMUSG00000093447	MGI:3779465	pseudogene	predicted gene 5139
3	pseudogene	64.19557	64.21368	negative	MGI_C57BL6J_5010479	Gm18294	NCBI_Gene:100416861,ENSEMBL:ENSMUSG00000093416	MGI:5010479	pseudogene	predicted gene, 18294
3	gene	64.23373	64.23546	positive	MGI_C57BL6J_5593621	Gm34462	NCBI_Gene:102637724	MGI:5593621	lncRNA gene	predicted gene, 34462
3	gene	64.25722	64.28971	negative	MGI_C57BL6J_3643995	Vmn2r3	NCBI_Gene:637004,ENSEMBL:ENSMUSG00000091572	MGI:3643995	protein coding gene	vomeronasal 2, receptor 3
3	gene	64.27582	64.27619	negative	MGI_C57BL6J_1345615	Ifld3	NA	NA	unclassified gene	induced in fatty liver dystrophy 3
3	gene	64.31841	64.31856	negative	MGI_C57BL6J_5453674	Gm23897	ENSEMBL:ENSMUSG00000088735	MGI:5453674	snoRNA gene	predicted gene, 23897
3	pseudogene	64.32866	64.33285	positive	MGI_C57BL6J_3757669	Vmn2r-ps4	NCBI_Gene:100124547,ENSEMBL:ENSMUSG00000093503	MGI:3757669	pseudogene	vomeronasal 2, receptor, pseudogene 4
3	pseudogene	64.33956	64.35772	negative	MGI_C57BL6J_3645404	Vmn2r-ps5	NCBI_Gene:667031,ENSEMBL:ENSMUSG00000091967	MGI:3645404	polymorphic pseudogene	vomeronasal 2, receptor, pseudogene 5
3	gene	64.38304	64.41537	negative	MGI_C57BL6J_3648229	Vmn2r4	NCBI_Gene:637053,ENSEMBL:ENSMUSG00000092049	MGI:3648229	protein coding gene	vomeronasal 2, receptor 4
3	pseudogene	64.43688	64.43829	negative	MGI_C57BL6J_3757678	Vmn2r-ps6	NCBI_Gene:100124548,ENSEMBL:ENSMUSG00000093395	MGI:3757678	pseudogene	vomeronasal 2, receptor, pseudogene 6
3	pseudogene	64.44260	64.44397	negative	MGI_C57BL6J_3757679	Vmn2r-ps7	NCBI_Gene:672951,ENSEMBL:ENSMUSG00000093546	MGI:3757679	pseudogene	vomeronasal 2, receptor, pseudogene 7
3	pseudogene	64.44797	64.46009	positive	MGI_C57BL6J_5313103	Gm20656	ENSEMBL:ENSMUSG00000093671	MGI:5313103	pseudogene	predicted gene 20656
3	pseudogene	64.47702	64.47932	positive	MGI_C57BL6J_3757680	Vmn2r-ps8	NCBI_Gene:100124549,ENSEMBL:ENSMUSG00000094482	MGI:3757680	pseudogene	vomeronasal 2, receptor, pseudogene 8
3	gene	64.48861	64.50984	negative	MGI_C57BL6J_3649074	Vmn2r5	NCBI_Gene:667060,ENSEMBL:ENSMUSG00000068999	MGI:3649074	protein coding gene	vomeronasal 2, receptor 5
3	gene	64.53131	64.56583	negative	MGI_C57BL6J_3649068	Vmn2r6	NCBI_Gene:667069,ENSEMBL:ENSMUSG00000090581	MGI:3649068	protein coding gene	vomeronasal 2, receptor 6
3	pseudogene	64.59152	64.59290	negative	MGI_C57BL6J_3757686	Vmn2r-ps9	NCBI_Gene:100124550,ENSEMBL:ENSMUSG00000093699	MGI:3757686	pseudogene	vomeronasal 2, receptor, pseudogene 9
3	pseudogene	64.59691	64.60577	positive	MGI_C57BL6J_5313104	Gm20657	ENSEMBL:ENSMUSG00000093484	MGI:5313104	pseudogene	predicted gene 20657
3	pseudogene	64.60043	64.60114	positive	MGI_C57BL6J_3781218	Gm3040	NCBI_Gene:100416170	MGI:3781218	pseudogene	predicted gene 3040
3	pseudogene	64.62169	64.62399	positive	MGI_C57BL6J_3757943	Vmn2r-ps10	NCBI_Gene:100124554,ENSEMBL:ENSMUSG00000095107	MGI:3757943	pseudogene	vomeronasal 2, receptor, pseudogene 10
3	pseudogene	64.63257	64.84474	negative	MGI_C57BL6J_2441682	Vmn2r-ps11	NCBI_Gene:319210,ENSEMBL:ENSMUSG00000093434	MGI:2441682	pseudogene	vomeronasal 2, receptor, pseudogene 11
3	gene	64.63286	64.84474	negative	MGI_C57BL6J_5504054	Gm26939	ENSEMBL:ENSMUSG00000097538	MGI:5504054	lncRNA gene	predicted gene, 26939
3	gene	64.68504	64.84476	negative	MGI_C57BL6J_2441693	Vmn2r7	NCBI_Gene:319217,ENSEMBL:ENSMUSG00000062200	MGI:2441693	protein coding gene	vomeronasal 2, receptor 7
3	pseudogene	64.74475	64.74564	negative	MGI_C57BL6J_3757944	Vmn2r-ps12	NCBI_Gene:100125273,ENSEMBL:ENSMUSG00000093474	MGI:3757944	pseudogene	vomeronasal 2, receptor, pseudogene 12
3	gene	64.89447	64.89460	negative	MGI_C57BL6J_5454999	Gm25222	ENSEMBL:ENSMUSG00000088824	MGI:5454999	snoRNA gene	predicted gene, 25222
3	pseudogene	64.89885	64.89976	positive	MGI_C57BL6J_3757946	Vmn2r-ps13	NCBI_Gene:670110,ENSEMBL:ENSMUSG00000093767	MGI:3757946	pseudogene	vomeronasal 2, receptor, pseudogene 13
3	gene	64.94905	65.37823	positive	MGI_C57BL6J_109155	Kcnab1	NCBI_Gene:16497,ENSEMBL:ENSMUSG00000027827	MGI:109155	protein coding gene	potassium voltage-gated channel, shaker-related subfamily, beta member 1
3	gene	64.94922	65.22370	positive	MGI_C57BL6J_5611276	Gm38048	ENSEMBL:ENSMUSG00000102437	MGI:5611276	lncRNA gene	predicted gene, 38048
3	gene	65.13306	65.30268	negative	MGI_C57BL6J_2443553	A330015K06Rik	NCBI_Gene:102637797,ENSEMBL:ENSMUSG00000104093	MGI:2443553	lncRNA gene	RIKEN cDNA A330015K06 gene
3	gene	65.32402	65.34943	negative	MGI_C57BL6J_2442748	A730090N16Rik	NCBI_Gene:319798,ENSEMBL:ENSMUSG00000090120	MGI:2442748	lncRNA gene	RIKEN cDNA A730090N16 gene
3	gene	65.37965	65.39262	negative	MGI_C57BL6J_1914687	Ssr3	NCBI_Gene:67437,ENSEMBL:ENSMUSG00000027828	MGI:1914687	protein coding gene	signal sequence receptor, gamma
3	pseudogene	65.39332	65.39629	positive	MGI_C57BL6J_3644824	Gm5540	NCBI_Gene:433604,ENSEMBL:ENSMUSG00000048916	MGI:3644824	pseudogene	predicted pseudogene 5540
3	gene	65.44941	65.47981	positive	MGI_C57BL6J_5593735	Gm34576	NCBI_Gene:102637876	MGI:5593735	lncRNA gene	predicted gene, 34576
3	gene	65.49409	65.49563	negative	MGI_C57BL6J_5593939	Gm34780	NCBI_Gene:102638146,ENSEMBL:ENSMUSG00000103513	MGI:5593939	lncRNA gene	predicted gene, 34780
3	gene	65.49517	65.51729	positive	MGI_C57BL6J_5622951	Gm40066	NCBI_Gene:105244461	MGI:5622951	lncRNA gene	predicted gene, 40066
3	pseudogene	65.50628	65.50664	negative	MGI_C57BL6J_5610237	Gm37009	ENSEMBL:ENSMUSG00000103880	MGI:5610237	pseudogene	predicted gene, 37009
3	gene	65.50646	65.52004	negative	MGI_C57BL6J_5621388	Gm38503	NCBI_Gene:102637953	MGI:5621388	lncRNA gene	predicted gene, 38503
3	gene	65.50726	65.52941	negative	MGI_C57BL6J_1918254	4931440P22Rik	NCBI_Gene:71004,ENSEMBL:ENSMUSG00000074580	MGI:1918254	lncRNA gene	RIKEN cDNA 4931440P22 gene
3	gene	65.52570	65.52579	positive	MGI_C57BL6J_5452056	Gm22279	ENSEMBL:ENSMUSG00000087825	MGI:5452056	snRNA gene	predicted gene, 22279
3	gene	65.52841	65.55552	positive	MGI_C57BL6J_2159210	Tiparp	NCBI_Gene:99929,ENSEMBL:ENSMUSG00000034640	MGI:2159210	protein coding gene	TCDD-inducible poly(ADP-ribose) polymerase
3	gene	65.57522	65.58085	negative	MGI_C57BL6J_5594083	Gm34924	NCBI_Gene:102638334	MGI:5594083	lncRNA gene	predicted gene, 34924
3	pseudogene	65.61350	65.61532	positive	MGI_C57BL6J_3648046	Gm5847	NCBI_Gene:545530,ENSEMBL:ENSMUSG00000082280	MGI:3648046	pseudogene	predicted gene 5847
3	pseudogene	65.61537	65.61617	negative	MGI_C57BL6J_5611461	Gm38233	ENSEMBL:ENSMUSG00000103294	MGI:5611461	pseudogene	predicted gene, 38233
3	gene	65.65929	65.65943	positive	MGI_C57BL6J_5531019	Mir8120	miRBase:MI0026052,NCBI_Gene:102465905,ENSEMBL:ENSMUSG00000098944	MGI:5531019	miRNA gene	microRNA 8120
3	gene	65.65954	65.83248	positive	MGI_C57BL6J_3645902	Lekr1	NCBI_Gene:624866,ENSEMBL:ENSMUSG00000074579	MGI:3645902	protein coding gene	leucine, glutamate and lysine rich 1
3	gene	65.67839	65.68088	positive	MGI_C57BL6J_5611004	Gm37776	ENSEMBL:ENSMUSG00000104037	MGI:5611004	unclassified gene	predicted gene, 37776
3	gene	65.77151	65.77162	negative	MGI_C57BL6J_5455532	Gm25755	ENSEMBL:ENSMUSG00000065330	MGI:5455532	snRNA gene	predicted gene, 25755
3	gene	65.82912	65.87228	negative	MGI_C57BL6J_5610587	Gm37359	ENSEMBL:ENSMUSG00000103620	MGI:5610587	lncRNA gene	predicted gene, 37359
3	gene	65.86327	65.86483	negative	MGI_C57BL6J_5610359	Gm37131	ENSEMBL:ENSMUSG00000103440	MGI:5610359	unclassified gene	predicted gene, 37131
3	gene	65.92610	65.92828	negative	MGI_C57BL6J_5594198	Gm35039	NCBI_Gene:102638487	MGI:5594198	lncRNA gene	predicted gene, 35039
3	pseudogene	65.93349	65.93391	negative	MGI_C57BL6J_5610265	Gm37037	ENSEMBL:ENSMUSG00000102566	MGI:5610265	pseudogene	predicted gene, 37037
3	gene	65.94591	65.95839	negative	MGI_C57BL6J_1922664	Ccnl1	NCBI_Gene:56706,ENSEMBL:ENSMUSG00000027829	MGI:1922664	protein coding gene	cyclin L1
3	gene	65.95776	65.96204	positive	MGI_C57BL6J_5610533	Gm37305	ENSEMBL:ENSMUSG00000103041	MGI:5610533	lncRNA gene	predicted gene, 37305
3	pseudogene	65.96873	65.97028	negative	MGI_C57BL6J_5594265	Gm35106	NCBI_Gene:105244463,ENSEMBL:ENSMUSG00000102914	MGI:5594265	pseudogene	predicted gene, 35106
3	gene	65.96991	65.97192	positive	MGI_C57BL6J_5610306	Gm37078	ENSEMBL:ENSMUSG00000102652	MGI:5610306	unclassified gene	predicted gene, 37078
3	pseudogene	65.98716	65.98975	negative	MGI_C57BL6J_5011209	Gm19024	NCBI_Gene:100418133,ENSEMBL:ENSMUSG00000103641	MGI:5011209	pseudogene	predicted gene, 19024
3	pseudogene	66.02950	66.03152	negative	MGI_C57BL6J_3643872	Gm6546	NCBI_Gene:625048,ENSEMBL:ENSMUSG00000103369	MGI:3643872	pseudogene	predicted gene 6546
3	gene	66.05356	66.29707	negative	MGI_C57BL6J_1920039	Veph1	NCBI_Gene:72789,ENSEMBL:ENSMUSG00000027831	MGI:1920039	protein coding gene	ventricular zone expressed PH domain-containing 1
3	gene	66.08668	66.08779	positive	MGI_C57BL6J_5611050	Gm37822	ENSEMBL:ENSMUSG00000104189	MGI:5611050	unclassified gene	predicted gene, 37822
3	gene	66.08811	66.08826	negative	MGI_C57BL6J_5456219	Gm26442	ENSEMBL:ENSMUSG00000064522	MGI:5456219	snRNA gene	predicted gene, 26442
3	pseudogene	66.09981	66.10006	positive	MGI_C57BL6J_5610201	Gm36973	ENSEMBL:ENSMUSG00000104307	MGI:5610201	pseudogene	predicted gene, 36973
3	pseudogene	66.12840	66.12975	negative	MGI_C57BL6J_98800	Tpi-rs2	NCBI_Gene:111205,ENSEMBL:ENSMUSG00000097968	MGI:98800	pseudogene	triosephosphate isomerase related sequence 2
3	pseudogene	66.19109	66.19124	negative	MGI_C57BL6J_5610558	Gm37330	ENSEMBL:ENSMUSG00000103208	MGI:5610558	pseudogene	predicted gene, 37330
3	gene	66.21989	66.22581	positive	MGI_C57BL6J_104641	Ptx3	NCBI_Gene:19288,ENSEMBL:ENSMUSG00000027832	MGI:104641	protein coding gene	pentraxin related gene
3	pseudogene	66.36454	66.36463	positive	MGI_C57BL6J_6275305	Gm50014	ENSEMBL:ENSMUSG00000117623	MGI:6275305	pseudogene	predicted gene, 50014
3	gene	66.37430	66.38810	positive	MGI_C57BL6J_5594343	Gm35184	NCBI_Gene:102638679	MGI:5594343	lncRNA gene	predicted gene, 35184
3	gene	66.40041	66.40607	positive	MGI_C57BL6J_5594395	Gm35236	NCBI_Gene:102638746	MGI:5594395	lncRNA gene	predicted gene, 35236
3	pseudogene	66.56278	66.56355	negative	MGI_C57BL6J_5010137	Gm17952	NCBI_Gene:100416166,ENSEMBL:ENSMUSG00000103600	MGI:5010137	pseudogene	predicted gene, 17952
3	pseudogene	66.88235	66.88314	positive	MGI_C57BL6J_3646021	Gm6555	NCBI_Gene:625115,ENSEMBL:ENSMUSG00000103700	MGI:3646021	pseudogene	predicted gene 6555
3	pseudogene	66.90736	66.90777	negative	MGI_C57BL6J_5611584	Gm38356	ENSEMBL:ENSMUSG00000103318	MGI:5611584	pseudogene	predicted gene, 38356
3	pseudogene	66.95354	66.95386	positive	MGI_C57BL6J_5663653	Gm43516	ENSEMBL:ENSMUSG00000105794	MGI:5663653	pseudogene	predicted gene 43516
3	gene	66.97172	66.98177	negative	MGI_C57BL6J_1201673	Shox2	NCBI_Gene:20429,ENSEMBL:ENSMUSG00000027833	MGI:1201673	protein coding gene	short stature homeobox 2
3	gene	66.98139	67.35840	positive	MGI_C57BL6J_1914130	Rsrc1	NCBI_Gene:66880,ENSEMBL:ENSMUSG00000034544	MGI:1914130	protein coding gene	arginine/serine-rich coiled-coil 1
3	gene	67.05596	67.05606	positive	MGI_C57BL6J_5452072	Gm22295	ENSEMBL:ENSMUSG00000065245	MGI:5452072	snRNA gene	predicted gene, 22295
3	gene	67.36546	67.37516	negative	MGI_C57BL6J_4937036	Gm17402	ENSEMBL:ENSMUSG00000090408	MGI:4937036	protein coding gene	predicted gene, 17402
3	gene	67.37410	67.40000	positive	MGI_C57BL6J_1341819	Mlf1	NCBI_Gene:17349,ENSEMBL:ENSMUSG00000048416	MGI:1341819	protein coding gene	myeloid leukemia factor 1
3	gene	67.43010	67.47653	positive	MGI_C57BL6J_107339	Gfm1	NCBI_Gene:28030,ENSEMBL:ENSMUSG00000027774	MGI:107339	protein coding gene	G elongation factor, mitochondrial 1
3	gene	67.45800	67.46393	negative	MGI_C57BL6J_107633	Lxn	NCBI_Gene:17035,ENSEMBL:ENSMUSG00000047557	MGI:107633	protein coding gene	latexin
3	gene	67.47698	67.47882	positive	MGI_C57BL6J_5662705	Gm42568	ENSEMBL:ENSMUSG00000103703	MGI:5662705	unclassified gene	predicted gene 42568
3	gene	67.47889	67.51552	negative	MGI_C57BL6J_1924461	Rarres1	NCBI_Gene:109222,ENSEMBL:ENSMUSG00000049404	MGI:1924461	protein coding gene	retinoic acid receptor responder (tazarotene induced) 1
3	gene	67.51567	67.51966	positive	MGI_C57BL6J_5622952	Gm40067	NCBI_Gene:105244464	MGI:5622952	lncRNA gene	predicted gene, 40067
3	gene	67.52266	67.55343	negative	MGI_C57BL6J_5594458	Gm35299	NCBI_Gene:102638825,ENSEMBL:ENSMUSG00000103718	MGI:5594458	lncRNA gene	predicted gene, 35299
3	gene	67.57057	67.57282	negative	MGI_C57BL6J_1921179	4930402C01Rik	ENSEMBL:ENSMUSG00000104382	MGI:1921179	lncRNA gene	RIKEN cDNA 4930402C01 gene
3	gene	67.57316	67.57329	negative	MGI_C57BL6J_5455696	Gm25919	ENSEMBL:ENSMUSG00000077459	MGI:5455696	snoRNA gene	predicted gene, 25919
3	gene	67.58274	67.60424	positive	MGI_C57BL6J_1914118	Mfsd1	NCBI_Gene:66868,ENSEMBL:ENSMUSG00000027775	MGI:1914118	protein coding gene	major facilitator superfamily domain containing 1
3	pseudogene	67.60575	67.60785	negative	MGI_C57BL6J_3648243	Gm8515	NCBI_Gene:667207,ENSEMBL:ENSMUSG00000103206	MGI:3648243	pseudogene	predicted gene 8515
3	pseudogene	67.61978	67.62073	negative	MGI_C57BL6J_2685258	Gm412	NCBI_Gene:208424,ENSEMBL:ENSMUSG00000103606	MGI:2685258	pseudogene	predicted gene 412
3	pseudogene	67.68436	67.68475	negative	MGI_C57BL6J_5610829	Gm37601	ENSEMBL:ENSMUSG00000102746	MGI:5610829	pseudogene	predicted gene, 37601
3	pseudogene	67.74197	67.74330	negative	MGI_C57BL6J_5010902	Gm18717	NCBI_Gene:100417618,ENSEMBL:ENSMUSG00000104477	MGI:5010902	pseudogene	predicted gene, 18717
3	gene	67.75360	67.75565	positive	MGI_C57BL6J_5594566	Gm35407	NCBI_Gene:102638975	MGI:5594566	lncRNA gene	predicted gene, 35407
3	gene	67.75566	67.76628	positive	MGI_C57BL6J_5622953	Gm40068	NCBI_Gene:105244465	MGI:5622953	lncRNA gene	predicted gene, 40068
3	gene	67.89222	68.05659	positive	MGI_C57BL6J_3644166	Iqcj	NCBI_Gene:208426,ENSEMBL:ENSMUSG00000051777	MGI:3644166	protein coding gene	IQ motif containing J
3	gene	67.89222	68.62648	positive	MGI_C57BL6J_5439400	Iqschfp	NCBI_Gene:100505386,ENSEMBL:ENSMUSG00000102422	MGI:5439400	protein coding gene	Iqcj and Schip1 fusion protein
3	gene	68.06480	68.62648	positive	MGI_C57BL6J_1353557	Schip1	NCBI_Gene:30953,ENSEMBL:ENSMUSG00000027777	MGI:1353557	protein coding gene	schwannomin interacting protein 1
3	pseudogene	68.30377	68.31036	negative	MGI_C57BL6J_3648047	Gm5848	NCBI_Gene:545531	MGI:3648047	pseudogene	predicted pseudogene 5848
3	pseudogene	68.33319	68.33378	positive	MGI_C57BL6J_3642851	Gm10292	NCBI_Gene:631379,ENSEMBL:ENSMUSG00000102846	MGI:3642851	pseudogene	predicted gene 10292
3	gene	68.40778	68.41470	positive	MGI_C57BL6J_3641783	Gm10723	ENSEMBL:ENSMUSG00000103345	MGI:3641783	unclassified gene	predicted gene 10723
3	gene	68.54752	68.54771	negative	MGI_C57BL6J_5451850	Gm22073	ENSEMBL:ENSMUSG00000084617	MGI:5451850	snRNA gene	predicted gene, 22073
3	gene	68.69064	68.69855	positive	MGI_C57BL6J_96539	Il12a	NCBI_Gene:16159,ENSEMBL:ENSMUSG00000027776	MGI:96539	protein coding gene	interleukin 12a
3	pseudogene	68.73314	68.73808	positive	MGI_C57BL6J_3708676	Gm10040	ENSEMBL:ENSMUSG00000058360	MGI:3708676	pseudogene	predicted gene 10040
3	gene	68.75991	68.76143	negative	MGI_C57BL6J_1922468	4930535E02Rik	ENSEMBL:ENSMUSG00000102677	MGI:1922468	lncRNA gene	RIKEN cDNA 4930535E02 gene
3	gene	68.76136	68.76267	positive	MGI_C57BL6J_5594743	Gm35584	NCBI_Gene:102639225,ENSEMBL:ENSMUSG00000102936	MGI:5594743	lncRNA gene	predicted gene, 35584
3	pseudogene	68.84608	68.84741	positive	MGI_C57BL6J_3644317	Gm7270	NCBI_Gene:639530,ENSEMBL:ENSMUSG00000103218,ENSEMBL:ENSMUSG00000102853	MGI:3644317	pseudogene	predicted gene 7270
3	gene	68.86792	68.87027	negative	MGI_C57BL6J_4937275	Gm17641	ENSEMBL:ENSMUSG00000091272	MGI:4937275	protein coding gene	predicted gene, 17641
3	gene	68.86959	68.87216	positive	MGI_C57BL6J_1915975	1110032F04Rik	NCBI_Gene:68725,ENSEMBL:ENSMUSG00000046999	MGI:1915975	protein coding gene	RIKEN cDNA 1110032F04 gene
3	gene	68.89250	69.00464	negative	MGI_C57BL6J_1915509	Ift80	NCBI_Gene:68259,ENSEMBL:ENSMUSG00000027778	MGI:1915509	protein coding gene	intraflagellar transport 80
3	pseudogene	68.90017	68.90045	negative	MGI_C57BL6J_5313136	Gm20689	ENSEMBL:ENSMUSG00000093384	MGI:5313136	pseudogene	predicted gene 20689
3	pseudogene	68.90181	68.90216	positive	MGI_C57BL6J_5313137	Gm20690	ENSEMBL:ENSMUSG00000093730,ENSEMBL:ENSMUSG00000103007	MGI:5313137	pseudogene	predicted gene 20690
3	pseudogene	68.90216	68.90278	negative	MGI_C57BL6J_5010773	Gm18588	NCBI_Gene:100417394,ENSEMBL:ENSMUSG00000093402	MGI:5010773	pseudogene	predicted gene, 18588
3	pseudogene	68.90382	68.90415	negative	MGI_C57BL6J_5313138	Gm20691	ENSEMBL:ENSMUSG00000093505	MGI:5313138	pseudogene	predicted gene 20691
3	gene	68.91650	68.91732	negative	MGI_C57BL6J_6097561	Gm48183	ENSEMBL:ENSMUSG00000111756	MGI:6097561	unclassified gene	predicted gene, 48183
3	gene	69.00474	69.03462	positive	MGI_C57BL6J_1917349	Smc4	NCBI_Gene:70099,ENSEMBL:ENSMUSG00000034349	MGI:1917349	protein coding gene	structural maintenance of chromosomes 4
3	gene	69.00977	69.00983	positive	MGI_C57BL6J_2676842	Mir15b	miRBase:MI0000140,NCBI_Gene:387175,ENSEMBL:ENSMUSG00000065580	MGI:2676842	miRNA gene	microRNA 15b
3	gene	69.00990	69.01000	positive	MGI_C57BL6J_3618690	Mir16-2	miRBase:MI0000566,NCBI_Gene:723949,ENSEMBL:ENSMUSG00000065606	MGI:3618690	miRNA gene	microRNA 16-2
3	gene	69.03529	69.04640	negative	MGI_C57BL6J_1914199	Trim59	NCBI_Gene:66949,ENSEMBL:ENSMUSG00000034317	MGI:1914199	protein coding gene	tripartite motif-containing 59
3	gene	69.06065	69.06525	positive	MGI_C57BL6J_2442898	9630025H16Rik	NCBI_Gene:105244467	MGI:2442898	lncRNA gene	RIKEN cDNA 9630025H16 gene
3	gene	69.06715	69.12711	negative	MGI_C57BL6J_1100848	Kpna4	NCBI_Gene:16649,ENSEMBL:ENSMUSG00000027782	MGI:1100848	protein coding gene	karyopherin (importin) alpha 4
3	gene	69.08510	69.08545	negative	MGI_C57BL6J_5451786	Gm22009	ENSEMBL:ENSMUSG00000089417	MGI:5451786	snoRNA gene	predicted gene, 22009
3	gene	69.11974	69.12272	negative	MGI_C57BL6J_5610786	Gm37558	ENSEMBL:ENSMUSG00000103094	MGI:5610786	unclassified gene	predicted gene, 37558
3	gene	69.13123	69.15718	positive	MGI_C57BL6J_2686493	Gm1647	NCBI_Gene:381452,ENSEMBL:ENSMUSG00000094763	MGI:2686493	lncRNA gene	predicted gene 1647
3	gene	69.22242	69.22362	positive	MGI_C57BL6J_1918869	Arl14	NCBI_Gene:71619,ENSEMBL:ENSMUSG00000098207	MGI:1918869	protein coding gene	ADP-ribosylation factor-like 14
3	gene	69.25461	69.26383	positive	MGI_C57BL6J_5622955	Gm40070	NCBI_Gene:105244468	MGI:5622955	lncRNA gene	predicted gene, 40070
3	gene	69.31686	69.56080	positive	MGI_C57BL6J_2139740	Ppm1l	NCBI_Gene:242083,ENSEMBL:ENSMUSG00000027784	MGI:2139740	protein coding gene	protein phosphatase 1 (formerly 2C)-like
3	gene	69.31816	69.31929	negative	MGI_C57BL6J_1920514	1700037N05Rik	NA	NA	unclassified gene	RIKEN cDNA 1700037N05 gene
3	pseudogene	69.32001	69.32062	negative	MGI_C57BL6J_4938041	Gm17214	NCBI_Gene:100416279,ENSEMBL:ENSMUSG00000091315	MGI:4938041	pseudogene	predicted gene 17214
3	pseudogene	69.33519	69.33579	negative	MGI_C57BL6J_4938039	Gm17212	NCBI_Gene:100416280,ENSEMBL:ENSMUSG00000090941	MGI:4938039	pseudogene	predicted gene 17212
3	gene	69.37640	69.38370	positive	MGI_C57BL6J_2443158	A330078L11Rik	NA	NA	unclassified gene	RIKEN cDNA A330078L11 gene
3	pseudogene	69.43101	69.43238	negative	MGI_C57BL6J_4938040	Gm17213	NCBI_Gene:100417908,ENSEMBL:ENSMUSG00000090743	MGI:4938040	pseudogene	predicted gene 17213
3	pseudogene	69.56624	69.56747	negative	MGI_C57BL6J_3644126	Gm8565	NCBI_Gene:667309,ENSEMBL:ENSMUSG00000098006	MGI:3644126	pseudogene	predicted gene 8565
3	gene	69.57392	69.59896	negative	MGI_C57BL6J_1349405	B3galnt1	NCBI_Gene:26879,ENSEMBL:ENSMUSG00000043300	MGI:1349405	protein coding gene	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1
3	pseudogene	69.66177	69.66216	positive	MGI_C57BL6J_5610608	Gm37380	ENSEMBL:ENSMUSG00000102342	MGI:5610608	pseudogene	predicted gene, 37380
3	gene	69.68547	69.68558	positive	MGI_C57BL6J_5455398	Gm25621	ENSEMBL:ENSMUSG00000087848	MGI:5455398	rRNA gene	predicted gene, 25621
3	pseudogene	69.71694	69.71744	negative	MGI_C57BL6J_98039	Rpl32-ps	NCBI_Gene:19952,ENSEMBL:ENSMUSG00000068969	MGI:98039	pseudogene	ribosomal protein L32, pseudogene
3	gene	69.72199	69.75637	positive	MGI_C57BL6J_2140103	Nmd3	NCBI_Gene:97112,ENSEMBL:ENSMUSG00000027787	MGI:2140103	protein coding gene	NMD3 ribosome export adaptor
3	gene	69.75311	69.75637	positive	MGI_C57BL6J_2442565	9530051E23Rik	NA	NA	unclassified gene	RIKEN cDNA 9530051E23 gene
3	pseudogene	69.80846	69.80902	negative	MGI_C57BL6J_5011240	Gm19055	NCBI_Gene:100418175	MGI:5011240	pseudogene	predicted gene, 19055
3	gene	69.81954	69.85994	negative	MGI_C57BL6J_1913433	Sptssb	NCBI_Gene:66183,ENSEMBL:ENSMUSG00000043461	MGI:1913433	protein coding gene	serine palmitoyltransferase, small subunit B
3	gene	69.88247	69.88411	positive	MGI_C57BL6J_5594976	Gm35817	NCBI_Gene:102639522	MGI:5594976	lncRNA gene	predicted gene, 35817
3	pseudogene	69.95481	69.95568	negative	MGI_C57BL6J_5010080	Gm17895	NCBI_Gene:100416058,ENSEMBL:ENSMUSG00000103549	MGI:5010080	pseudogene	predicted gene, 17895
3	gene	69.96232	69.96245	negative	MGI_C57BL6J_5453261	Gm23484	ENSEMBL:ENSMUSG00000077366	MGI:5453261	snoRNA gene	predicted gene, 23484
3	pseudogene	69.96328	69.96347	positive	MGI_C57BL6J_5611012	Gm37784	ENSEMBL:ENSMUSG00000102525	MGI:5611012	pseudogene	predicted gene, 37784
3	gene	70.00761	70.02871	positive	MGI_C57BL6J_2685260	Otol1	NCBI_Gene:229389,ENSEMBL:ENSMUSG00000027788	MGI:2685260	protein coding gene	otolin 1
3	pseudogene	70.05975	70.06047	positive	MGI_C57BL6J_5610909	Gm37681	ENSEMBL:ENSMUSG00000103020	MGI:5610909	pseudogene	predicted gene, 37681
3	pseudogene	70.11625	70.11653	negative	MGI_C57BL6J_5610813	Gm37585	ENSEMBL:ENSMUSG00000103113	MGI:5610813	pseudogene	predicted gene, 37585
3	gene	70.22875	70.22887	negative	MGI_C57BL6J_5453254	Gm23477	ENSEMBL:ENSMUSG00000089507	MGI:5453254	snoRNA gene	predicted gene, 23477
3	pseudogene	70.41328	70.41388	positive	MGI_C57BL6J_3644892	Gm6631	NCBI_Gene:625868,ENSEMBL:ENSMUSG00000102663	MGI:3644892	pseudogene	predicted gene 6631
3	pseudogene	70.56626	70.56730	negative	MGI_C57BL6J_5610441	Gm37213	ENSEMBL:ENSMUSG00000104023	MGI:5610441	pseudogene	predicted gene, 37213
3	pseudogene	70.68909	70.68938	positive	MGI_C57BL6J_3642422	Gm10780	ENSEMBL:ENSMUSG00000074877	MGI:3642422	pseudogene	predicted gene 10780
3	gene	70.77238	70.80729	negative	MGI_C57BL6J_3643829	Gm6634	NCBI_Gene:625901,ENSEMBL:ENSMUSG00000097252	MGI:3643829	lncRNA gene	predicted gene 6634
3	pseudogene	71.40104	71.40155	negative	MGI_C57BL6J_3646556	Gm8599	NCBI_Gene:108168916,ENSEMBL:ENSMUSG00000102666	MGI:3646556	pseudogene	predicted gene 8599
3	pseudogene	71.46523	71.46567	negative	MGI_C57BL6J_5611533	Gm38305	ENSEMBL:ENSMUSG00000103396	MGI:5611533	pseudogene	predicted gene, 38305
3	pseudogene	71.67252	71.67712	positive	MGI_C57BL6J_5011379	Gm19194	NCBI_Gene:100418413,ENSEMBL:ENSMUSG00000103815	MGI:5011379	pseudogene	predicted gene, 19194
3	pseudogene	71.85918	71.86015	positive	MGI_C57BL6J_3643186	Gm8604	NCBI_Gene:667385,ENSEMBL:ENSMUSG00000098189	MGI:3643186	pseudogene	predicted gene 8604
3	pseudogene	71.89484	71.89499	positive	MGI_C57BL6J_5610845	Gm37617	ENSEMBL:ENSMUSG00000103465	MGI:5610845	pseudogene	predicted gene, 37617
3	pseudogene	72.00992	72.01046	negative	MGI_C57BL6J_5010416	Gm18231	NCBI_Gene:100416754	MGI:5010416	pseudogene	predicted gene, 18231
3	pseudogene	72.05000	72.05062	negative	MGI_C57BL6J_3781529	Gm3351	NCBI_Gene:100041459,ENSEMBL:ENSMUSG00000103279	MGI:3781529	pseudogene	predicted gene 3351
3	pseudogene	72.18074	72.18095	positive	MGI_C57BL6J_5610831	Gm37603	ENSEMBL:ENSMUSG00000103859	MGI:5610831	pseudogene	predicted gene, 37603
3	gene	72.31294	72.31303	positive	MGI_C57BL6J_5530847	Gm27465	ENSEMBL:ENSMUSG00000098869	MGI:5530847	unclassified non-coding RNA gene	predicted gene, 27465
3	pseudogene	72.60384	72.60435	negative	MGI_C57BL6J_5611129	Gm37901	ENSEMBL:ENSMUSG00000103078	MGI:5611129	pseudogene	predicted gene, 37901
3	gene	72.73783	72.73798	negative	MGI_C57BL6J_5452228	Gm22451	ENSEMBL:ENSMUSG00000084752	MGI:5452228	snRNA gene	predicted gene, 22451
3	gene	72.88855	72.96786	negative	MGI_C57BL6J_1917233	Sis	NCBI_Gene:69983,ENSEMBL:ENSMUSG00000027790	MGI:1917233	protein coding gene	sucrase isomaltase (alpha-glucosidase)
3	gene	73.04197	73.04384	negative	MGI_C57BL6J_5610284	Gm37056	ENSEMBL:ENSMUSG00000102753	MGI:5610284	unclassified gene	predicted gene, 37056
3	gene	73.04725	73.05788	negative	MGI_C57BL6J_2679447	Slitrk3	NCBI_Gene:386750,ENSEMBL:ENSMUSG00000048304	MGI:2679447	protein coding gene	SLIT and NTRK-like family, member 3
3	gene	73.06632	73.59483	positive	MGI_C57BL6J_5434110	Gm20754	NCBI_Gene:626082,ENSEMBL:ENSMUSG00000103428	MGI:5434110	lncRNA gene	predicted gene, 20754
3	gene	73.14685	73.14696	positive	MGI_C57BL6J_5454321	Gm24544	ENSEMBL:ENSMUSG00000077050	MGI:5454321	miRNA gene	predicted gene, 24544
3	gene	73.16409	73.16621	positive	MGI_C57BL6J_5610953	Gm37725	ENSEMBL:ENSMUSG00000102916	MGI:5610953	unclassified gene	predicted gene, 37725
3	gene	73.20770	73.20800	negative	MGI_C57BL6J_5452315	Gm22538	ENSEMBL:ENSMUSG00000088794	MGI:5452315	unclassified non-coding RNA gene	predicted gene, 22538
3	gene	73.32943	73.47001	positive	MGI_C57BL6J_5611581	Gm38353	ENSEMBL:ENSMUSG00000102820	MGI:5611581	lncRNA gene	predicted gene, 38353
3	gene	73.35121	73.48165	negative	MGI_C57BL6J_1921943	4930509J09Rik	NCBI_Gene:74693,ENSEMBL:ENSMUSG00000102362	MGI:1921943	lncRNA gene	RIKEN cDNA 4930509J09 gene
3	gene	73.63581	73.70844	negative	MGI_C57BL6J_894278	Bche	NCBI_Gene:12038,ENSEMBL:ENSMUSG00000027792	MGI:894278	protein coding gene	butyrylcholinesterase
3	pseudogene	73.93305	73.93412	positive	MGI_C57BL6J_3644686	Gm8625	NCBI_Gene:667425,ENSEMBL:ENSMUSG00000102859	MGI:3644686	pseudogene	predicted gene 8625
3	gene	74.00922	74.01728	negative	MGI_C57BL6J_5012541	Gm20356	NCBI_Gene:100504692,ENSEMBL:ENSMUSG00000104096	MGI:5012541	lncRNA gene	predicted gene, 20356
3	gene	74.10541	74.12645	negative	MGI_C57BL6J_5595228	Gm36069	NCBI_Gene:102639855	MGI:5595228	lncRNA gene	predicted gene, 36069
3	pseudogene	74.24226	74.29687	negative	MGI_C57BL6J_3779552	Gm6098	NCBI_Gene:100861784,ENSEMBL:ENSMUSG00000096400	MGI:3779552	pseudogene	predicted gene 6098
3	pseudogene	74.32353	74.32399	negative	MGI_C57BL6J_5610278	Gm37050	ENSEMBL:ENSMUSG00000104227	MGI:5610278	pseudogene	predicted gene, 37050
3	pseudogene	74.81472	74.81534	positive	MGI_C57BL6J_3647458	Gm8643	NCBI_Gene:108168917,ENSEMBL:ENSMUSG00000102809	MGI:3647458	pseudogene	predicted gene 8643
3	gene	75.02240	75.02461	negative	MGI_C57BL6J_5610692	Gm37464	ENSEMBL:ENSMUSG00000102420	MGI:5610692	unclassified gene	predicted gene, 37464
3	gene	75.03790	75.16505	negative	MGI_C57BL6J_2674085	Zbbx	NCBI_Gene:213234,ENSEMBL:ENSMUSG00000034151	MGI:2674085	protein coding gene	zinc finger, B-box domain containing
3	gene	75.16506	75.20808	positive	MGI_C57BL6J_5622956	Gm40071	NCBI_Gene:105244469	MGI:5622956	lncRNA gene	predicted gene, 40071
3	gene	75.24236	75.27008	negative	MGI_C57BL6J_1915181	Serpini2	NCBI_Gene:67931,ENSEMBL:ENSMUSG00000034139	MGI:1915181	protein coding gene	serine (or cysteine) peptidase inhibitor, clade I, member 2
3	gene	75.27393	75.48216	negative	MGI_C57BL6J_3645287	Wdr49	NCBI_Gene:213248,ENSEMBL:ENSMUSG00000104301	MGI:3645287	protein coding gene	WD repeat domain 49
3	pseudogene	75.39132	75.39264	positive	MGI_C57BL6J_5010021	Gm17836	NCBI_Gene:100415953,ENSEMBL:ENSMUSG00000103444	MGI:5010021	pseudogene	predicted gene, 17836
3	gene	75.51649	75.55686	negative	MGI_C57BL6J_1928396	Pdcd10	NCBI_Gene:56426,ENSEMBL:ENSMUSG00000027835	MGI:1928396	protein coding gene	programmed cell death 10
3	gene	75.55753	75.64350	positive	MGI_C57BL6J_1194506	Serpini1	NCBI_Gene:20713,ENSEMBL:ENSMUSG00000027834	MGI:1194506	protein coding gene	serine (or cysteine) peptidase inhibitor, clade I, member 1
3	gene	75.61935	75.62336	positive	MGI_C57BL6J_5610900	Gm37672	ENSEMBL:ENSMUSG00000102625	MGI:5610900	unclassified gene	predicted gene, 37672
3	gene	75.64744	75.65573	negative	MGI_C57BL6J_1916443	Platr10	NCBI_Gene:69193,ENSEMBL:ENSMUSG00000099370	MGI:1916443	lncRNA gene	pluripotency associated transcript 10
3	gene	75.69895	75.69946	negative	MGI_C57BL6J_5610421	Gm37193	ENSEMBL:ENSMUSG00000102188	MGI:5610421	unclassified gene	predicted gene, 37193
3	gene	75.71479	75.71492	positive	MGI_C57BL6J_5455623	Gm25846	ENSEMBL:ENSMUSG00000088638	MGI:5455623	snoRNA gene	predicted gene, 25846
3	gene	75.74820	75.78765	positive	MGI_C57BL6J_5579839	Gm29133	ENSEMBL:ENSMUSG00000100962	MGI:5579839	protein coding gene	predicted gene 29133
3	gene	75.87508	75.95695	negative	MGI_C57BL6J_1920374	Golim4	NCBI_Gene:73124,ENSEMBL:ENSMUSG00000034109	MGI:1920374	protein coding gene	golgi integral membrane protein 4
3	gene	75.95212	75.95430	positive	MGI_C57BL6J_5610913	Gm37685	ENSEMBL:ENSMUSG00000103024	MGI:5610913	unclassified gene	predicted gene, 37685
3	gene	75.95610	76.00114	positive	MGI_C57BL6J_5610484	Gm37256	ENSEMBL:ENSMUSG00000104448	MGI:5610484	lncRNA gene	predicted gene, 37256
3	pseudogene	76.04092	76.04172	negative	MGI_C57BL6J_5010613	Gm18428	NCBI_Gene:100417155,ENSEMBL:ENSMUSG00000104223	MGI:5010613	pseudogene	predicted gene, 18428
3	gene	76.07427	76.71002	positive	MGI_C57BL6J_2442179	Fstl5	NCBI_Gene:213262,ENSEMBL:ENSMUSG00000034098	MGI:2442179	protein coding gene	follistatin-like 5
3	gene	76.54669	76.55025	positive	MGI_C57BL6J_5611125	Gm37897	ENSEMBL:ENSMUSG00000103920	MGI:5611125	unclassified gene	predicted gene, 37897
3	pseudogene	76.82206	76.82240	positive	MGI_C57BL6J_5610518	Gm37290	ENSEMBL:ENSMUSG00000103702	MGI:5610518	pseudogene	predicted gene, 37290
3	pseudogene	76.88450	76.88533	positive	MGI_C57BL6J_5011416	Gm19231	NCBI_Gene:100418471,ENSEMBL:ENSMUSG00000102216	MGI:5011416	pseudogene	predicted gene, 19231
3	gene	77.10521	77.10528	negative	MGI_C57BL6J_5453421	Gm23644	ENSEMBL:ENSMUSG00000088481	MGI:5453421	snoRNA gene	predicted gene, 23644
3	pseudogene	77.56081	77.56394	negative	MGI_C57BL6J_2674154	Dnmt3a-ps1	NCBI_Gene:445261,ENSEMBL:ENSMUSG00000102489	MGI:2674154	pseudogene	DNA methyltransferase 3A, pseudogene 1
3	gene	77.56496	77.57134	negative	MGI_C57BL6J_5611034	Gm37806	ENSEMBL:ENSMUSG00000103849	MGI:5611034	unclassified gene	predicted gene, 37806
3	pseudogene	77.69137	77.69223	negative	MGI_C57BL6J_5010480	Gm18295	NCBI_Gene:100416866	MGI:5010480	pseudogene	predicted gene, 18295
3	gene	77.70289	77.70439	negative	MGI_C57BL6J_5611423	Gm38195	ENSEMBL:ENSMUSG00000102872	MGI:5611423	unclassified gene	predicted gene, 38195
3	pseudogene	77.87278	77.87315	negative	MGI_C57BL6J_5610804	Gm37576	ENSEMBL:ENSMUSG00000102393	MGI:5610804	pseudogene	predicted gene, 37576
3	pseudogene	77.96138	77.96280	positive	MGI_C57BL6J_5010904	Gm18719	NCBI_Gene:100417620,ENSEMBL:ENSMUSG00000105026	MGI:5010904	pseudogene	predicted gene, 18719
3	pseudogene	78.00646	78.00698	positive	MGI_C57BL6J_3648953	Gm6677	NCBI_Gene:626461,ENSEMBL:ENSMUSG00000103312	MGI:3648953	pseudogene	predicted gene 6677
3	pseudogene	78.08583	78.08740	negative	MGI_C57BL6J_3643677	Gm8684	NCBI_Gene:667526,ENSEMBL:ENSMUSG00000102637	MGI:3643677	pseudogene	predicted gene 8684
3	pseudogene	78.13446	78.13558	positive	MGI_C57BL6J_3645908	Gm6680	NCBI_Gene:626479,ENSEMBL:ENSMUSG00000103817	MGI:3645908	pseudogene	predicted gene 6680
3	gene	78.40430	78.40594	negative	MGI_C57BL6J_5663463	Gm43326	ENSEMBL:ENSMUSG00000104782	MGI:5663463	unclassified gene	predicted gene 43326
3	gene	78.40616	78.41077	negative	MGI_C57BL6J_5595447	Gm36288	NCBI_Gene:102640153	MGI:5595447	lncRNA gene	predicted gene, 36288
3	pseudogene	78.48658	78.48868	negative	MGI_C57BL6J_3705708	Gm15442	NCBI_Gene:100041691,ENSEMBL:ENSMUSG00000084370	MGI:3705708	pseudogene	predicted gene 15442
3	pseudogene	78.75862	78.75946	positive	MGI_C57BL6J_5011137	Gm18952	NCBI_Gene:100418022,ENSEMBL:ENSMUSG00000102341	MGI:5011137	pseudogene	predicted gene, 18952
3	gene	78.78973	78.79223	negative	MGI_C57BL6J_5595500	Gm36341	NCBI_Gene:102640221	MGI:5595500	lncRNA gene	predicted gene, 36341
3	gene	78.84222	78.84257	positive	MGI_C57BL6J_5454526	Gm24749	ENSEMBL:ENSMUSG00000088463	MGI:5454526	unclassified non-coding RNA gene	predicted gene, 24749
3	pseudogene	78.86489	78.86557	negative	MGI_C57BL6J_5010138	Gm17953	NCBI_Gene:100416167,ENSEMBL:ENSMUSG00000102438	MGI:5010138	pseudogene	predicted gene, 17953
3	pseudogene	78.89183	78.89247	negative	MGI_C57BL6J_3646590	Gm5277	NCBI_Gene:383883,ENSEMBL:ENSMUSG00000091361	MGI:3646590	pseudogene	predicted gene 5277
3	pseudogene	78.91724	78.91846	positive	MGI_C57BL6J_3641638	Gm10291	NCBI_Gene:100041748,ENSEMBL:ENSMUSG00000070443	MGI:3641638	pseudogene	predicted pseudogene 10291
3	gene	78.91846	78.93631	negative	MGI_C57BL6J_5621427	Gm38542	NCBI_Gene:102641233	MGI:5621427	lncRNA gene	predicted gene, 38542
3	pseudogene	78.96549	78.96715	negative	MGI_C57BL6J_3704220	Gm9762	NCBI_Gene:100041766,ENSEMBL:ENSMUSG00000037096	MGI:3704220	pseudogene	predicted pseudogene 9762
3	gene	78.97992	78.98005	positive	MGI_C57BL6J_5453217	Gm23440	ENSEMBL:ENSMUSG00000077487	MGI:5453217	snoRNA gene	predicted gene, 23440
3	gene	79.06251	79.28724	negative	MGI_C57BL6J_2659071	Rapgef2	NCBI_Gene:76089,ENSEMBL:ENSMUSG00000062232	MGI:2659071	protein coding gene	Rap guanine nucleotide exchange factor (GEF) 2
3	gene	79.19637	79.19648	positive	MGI_C57BL6J_5453927	Gm24150	ENSEMBL:ENSMUSG00000064693	MGI:5453927	snRNA gene	predicted gene, 24150
3	gene	79.21292	79.25391	positive	MGI_C57BL6J_1918174	4921511C10Rik	NCBI_Gene:70924,ENSEMBL:ENSMUSG00000104585	MGI:1918174	lncRNA gene	RIKEN cDNA 4921511C10 gene
3	gene	79.23228	79.23413	negative	MGI_C57BL6J_2443462	B930012P20Rik	NA	NA	unclassified gene	RIKEN cDNA B930012P20 gene
3	gene	79.28717	79.28985	positive	MGI_C57BL6J_2686494	6430573P05Rik	ENSEMBL:ENSMUSG00000102545	MGI:2686494	lncRNA gene	RIKEN cDNA 6430573P05 gene
3	gene	79.33420	79.33658	negative	MGI_C57BL6J_5622957	Gm40072	NCBI_Gene:105244470	MGI:5622957	lncRNA gene	predicted gene, 40072
3	gene	79.33666	79.46413	positive	MGI_C57BL6J_4936993	Gm17359	NCBI_Gene:100233207,ENSEMBL:ENSMUSG00000091685	MGI:4936993	protein coding gene	predicted gene, 17359
3	gene	79.45597	79.56780	negative	MGI_C57BL6J_2683054	Fnip2	NCBI_Gene:329679,ENSEMBL:ENSMUSG00000061175	MGI:2683054	protein coding gene	folliculin interacting protein 2
3	gene	79.50979	79.51210	negative	MGI_C57BL6J_5595601	Gm36442	NCBI_Gene:102640362	MGI:5595601	lncRNA gene	predicted gene, 36442
3	gene	79.55131	79.55219	negative	MGI_C57BL6J_3781690	Gm3513	ENSEMBL:ENSMUSG00000089746	MGI:3781690	lncRNA gene	predicted gene 3513
3	gene	79.56819	79.57332	positive	MGI_C57BL6J_1923129	4930589L23Rik	NCBI_Gene:75879,ENSEMBL:ENSMUSG00000068957	MGI:1923129	lncRNA gene	RIKEN cDNA 4930589L23 gene
3	pseudogene	79.58259	79.58323	positive	MGI_C57BL6J_5594226	Gm35067	ENSEMBL:ENSMUSG00000103564	MGI:5594226	pseudogene	predicted gene, 35067
3	gene	79.59134	79.60365	positive	MGI_C57BL6J_1914988	Ppid	NCBI_Gene:67738,ENSEMBL:ENSMUSG00000027804	MGI:1914988	protein coding gene	peptidylprolyl isomerase D (cyclophilin D)
3	gene	79.60379	79.62950	negative	MGI_C57BL6J_106100	Etfdh	NCBI_Gene:66841,ENSEMBL:ENSMUSG00000027809	MGI:106100	protein coding gene	electron transferring flavoprotein, dehydrogenase
3	gene	79.61054	79.61183	negative	MGI_C57BL6J_5611201	Gm37973	ENSEMBL:ENSMUSG00000102370	MGI:5611201	unclassified gene	predicted gene, 37973
3	gene	79.62908	79.63282	positive	MGI_C57BL6J_1923189	4930579G24Rik	NCBI_Gene:75939,ENSEMBL:ENSMUSG00000027811	MGI:1923189	protein coding gene	RIKEN cDNA 4930579G24 gene
3	gene	79.64160	79.73795	negative	MGI_C57BL6J_2682211	Rxfp1	NCBI_Gene:381489,ENSEMBL:ENSMUSG00000034009	MGI:2682211	protein coding gene	relaxin/insulin-like family peptide receptor 1
3	gene	79.67337	79.67688	negative	MGI_C57BL6J_5504099	Gm26984	ENSEMBL:ENSMUSG00000098204	MGI:5504099	lncRNA gene	predicted gene, 26984
3	gene	79.81256	79.85279	negative	MGI_C57BL6J_1917902	Tmem144	NCBI_Gene:70652,ENSEMBL:ENSMUSG00000027956	MGI:1917902	protein coding gene	transmembrane protein 144
3	gene	79.83493	79.83504	positive	MGI_C57BL6J_5456197	Gm26420	ENSEMBL:ENSMUSG00000077461	MGI:5456197	snRNA gene	predicted gene, 26420
3	gene	79.85287	79.85666	positive	MGI_C57BL6J_5622958	Gm40073	NCBI_Gene:105244471	MGI:5622958	lncRNA gene	predicted gene, 40073
3	gene	79.85929	79.88681	negative	MGI_C57BL6J_5595728	Gm36569	NCBI_Gene:102640530,ENSEMBL:ENSMUSG00000102191	MGI:5595728	lncRNA gene	predicted gene, 36569
3	gene	79.88447	79.94628	positive	MGI_C57BL6J_1915909	Gask1b	NCBI_Gene:68659,ENSEMBL:ENSMUSG00000027955	MGI:1915909	protein coding gene	golgi associated kinase 1B
3	gene	80.05489	80.21309	positive	MGI_C57BL6J_2685464	A330069K06Rik	NCBI_Gene:213544,ENSEMBL:ENSMUSG00000103181	MGI:2685464	lncRNA gene	RIKEN cDNA A330069K06 gene
3	gene	80.05987	80.10161	positive	MGI_C57BL6J_5622959	Gm40074	NCBI_Gene:105244472	MGI:5622959	lncRNA gene	predicted gene, 40074
3	pseudogene	80.08808	80.08916	negative	MGI_C57BL6J_5011251	Gm19066	NCBI_Gene:100418193,ENSEMBL:ENSMUSG00000103193	MGI:5011251	pseudogene	predicted gene, 19066
3	gene	80.13413	80.13646	positive	MGI_C57BL6J_5663976	Gm43839	ENSEMBL:ENSMUSG00000105307	MGI:5663976	unclassified gene	predicted gene 43839
3	pseudogene	80.19448	80.19463	negative	MGI_C57BL6J_5611523	Gm38295	ENSEMBL:ENSMUSG00000103154	MGI:5611523	pseudogene	predicted gene, 38295
3	gene	80.20249	80.20560	negative	MGI_C57BL6J_5611120	Gm37892	ENSEMBL:ENSMUSG00000103929	MGI:5611120	lncRNA gene	predicted gene, 37892
3	gene	80.28512	80.33459	negative	MGI_C57BL6J_5611199	Gm37971	ENSEMBL:ENSMUSG00000102379	MGI:5611199	lncRNA gene	predicted gene, 37971
3	pseudogene	80.39935	80.39967	negative	MGI_C57BL6J_3644992	Gm6706	ENSEMBL:ENSMUSG00000087123	MGI:3644992	pseudogene	predicted gene 6706
3	gene	80.68145	80.80320	negative	MGI_C57BL6J_95809	Gria2	NCBI_Gene:14800,ENSEMBL:ENSMUSG00000033981	MGI:95809	protein coding gene	glutamate receptor, ionotropic, AMPA2 (alpha 2)
3	gene	80.69220	80.69231	negative	MGI_C57BL6J_5455526	Gm25749	ENSEMBL:ENSMUSG00000093226	MGI:5455526	miRNA gene	predicted gene, 25749
3	gene	80.84315	80.84355	negative	MGI_C57BL6J_1920346	2900092N11Rik	NA	NA	unclassified gene	RIKEN cDNA 2900092N11 gene
3	gene	80.84360	80.91366	negative	MGI_C57BL6J_95751	Glrb	NCBI_Gene:14658,ENSEMBL:ENSMUSG00000028020	MGI:95751	protein coding gene	glycine receptor, beta subunit
3	pseudogene	80.88509	80.88699	positive	MGI_C57BL6J_5010730	Gm18545	NCBI_Gene:100417342	MGI:5010730	pseudogene	predicted gene, 18545
3	gene	80.96296	80.97163	positive	MGI_C57BL6J_5662605	Gm42468	ENSEMBL:ENSMUSG00000105092	MGI:5662605	lncRNA gene	predicted gene 42468
3	pseudogene	80.99156	81.00159	positive	MGI_C57BL6J_5588967	Gm29808	NCBI_Gene:101056241,ENSEMBL:ENSMUSG00000103419	MGI:5588967	pseudogene	predicted gene, 29808
3	gene	81.03295	81.03377	positive	MGI_C57BL6J_5662613	Gm42476	ENSEMBL:ENSMUSG00000106293	MGI:5662613	lncRNA gene	predicted gene 42476
3	gene	81.03589	81.21404	positive	MGI_C57BL6J_1859631	Pdgfc	NCBI_Gene:54635,ENSEMBL:ENSMUSG00000028019	MGI:1859631	protein coding gene	platelet-derived growth factor, C polypeptide
3	gene	81.03741	81.04044	negative	MGI_C57BL6J_3801866	Gm16000	ENSEMBL:ENSMUSG00000085106	MGI:3801866	lncRNA gene	predicted gene 16000
3	pseudogene	81.40529	81.40557	negative	MGI_C57BL6J_5610528	Gm37300	ENSEMBL:ENSMUSG00000102223	MGI:5610528	pseudogene	predicted gene, 37300

Chromsome 4

query_variants <- create_variant_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/cc_variants.sqlite")
query_genes <- create_gene_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/mouse_genes_mgi.sqlite")

for (i in 2){
#for (i in 1:1){
  #Plot 1
  marker = find_marker(gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i])
  #g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE, minprob = 0.5)
  gp <- g[,marker]
  gp[gp==1] <- "AA"
  gp[gp==2] <- "AB"
  gp[gp==0] <- NA
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(gp, gm$covar[,peaks$lodcolumn[i]], ylab=peaks$lodcolumn[i], sort=FALSE)
  title(main = paste("chr", chr=peaks$chr[i], "pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"mb (",peaks$lodcolumn[i],")"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]
  

# Plot 2
  pr_sub <- pull_genoprobint(pr.qc, gm$gmap, chr, c(peaks$ci_lo[i], peaks$ci_hi[i]))
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  #coeff <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  #coeff_sub <- scan1coef(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  blup <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]])
  blup_sub <- scan1blup(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]])

  #plot_coef(coeff, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1coeff; positions in cM] )")
  #     )

  #plot_coef(coeff_sub, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1coeff; positions in cM] ) ")
  #     )


  plot_coef(blup, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste("chr", chr=peaks$chr[i], "pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1blup; positions in cM] )")
       )

  plot_coef(blup_sub, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste("chr", chr=peaks$chr[i], "pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1blup; positions in cM] )")
       )

  #last_coef <- unclass(coeff)[nrow(coeff),1:3]
  #for(t in seq(along=last_coef))
  #axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])


  genesgss = query_genes(chr, start, end)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  #genesgss <- 
  #table <- 
  #genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")] %>%
  #kable(escape = F,align = c("ccccccccccc")) %>%
  #kable_styling("striped", full_width = T) #%>% 
  #cat #%>%
  #column_spec(1, bold=TRUE)
#
  #print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], escape = F,align = c("ccccccccccc")))

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  #table
  

}

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
4	gene	130.0474	130.0993	positive	MGI_C57BL6J_1095396	Col16a1	NCBI_Gene:107581,ENSEMBL:ENSMUSG00000040690	MGI:1095396	protein coding gene	collagen, type XVI, alpha 1
4	gene	130.1026	130.1281	positive	MGI_C57BL6J_1915148	Pef1	NCBI_Gene:67898,ENSEMBL:ENSMUSG00000028779	MGI:1915148	protein coding gene	penta-EF hand domain containing 1
4	gene	130.1055	130.1083	negative	MGI_C57BL6J_5623143	Gm40258	NCBI_Gene:105244699	MGI:5623143	lncRNA gene	predicted gene, 40258
4	gene	130.1302	130.1397	negative	MGI_C57BL6J_2385650	Hcrtr1	NCBI_Gene:230777,ENSEMBL:ENSMUSG00000028778	MGI:2385650	protein coding gene	hypocretin (orexin) receptor 1
4	gene	130.1440	130.1489	positive	MGI_C57BL6J_5623144	Gm40259	NCBI_Gene:105244700	MGI:5623144	lncRNA gene	predicted gene, 40259
4	gene	130.1645	130.1751	negative	MGI_C57BL6J_2137617	Tinagl1	NCBI_Gene:94242,ENSEMBL:ENSMUSG00000028776	MGI:2137617	protein coding gene	tubulointerstitial nephritis antigen-like 1
4	gene	130.2090	130.2224	negative	MGI_C57BL6J_2685699	Ldc1	NCBI_Gene:332942,ENSEMBL:ENSMUSG00000023120	MGI:2685699	protein coding gene	leucine decarboxylase 1
4	gene	130.2366	130.2491	positive	MGI_C57BL6J_5826361	Gm46724	NCBI_Gene:108168712	MGI:5826361	lncRNA gene	predicted gene, 46724
4	gene	130.2535	130.2792	negative	MGI_C57BL6J_1919132	Serinc2	NCBI_Gene:230779,ENSEMBL:ENSMUSG00000023232	MGI:1919132	protein coding gene	serine incorporator 2
4	gene	130.2757	130.2809	positive	MGI_C57BL6J_5594116	Gm34957	NCBI_Gene:102638376	MGI:5594116	lncRNA gene	predicted gene, 34957
4	gene	130.2912	130.3087	negative	MGI_C57BL6J_3642427	Gm10570	NCBI_Gene:102638454,ENSEMBL:ENSMUSG00000073752	MGI:3642427	lncRNA gene	predicted gene 10570
4	gene	130.3086	130.3155	positive	MGI_C57BL6J_95476	Fabp3	NCBI_Gene:14077,ENSEMBL:ENSMUSG00000028773	MGI:95476	protein coding gene	fatty acid binding protein 3, muscle and heart
4	gene	130.3154	130.3600	negative	MGI_C57BL6J_1919955	Zcchc17	NCBI_Gene:619605,ENSEMBL:ENSMUSG00000028772	MGI:1919955	protein coding gene	zinc finger, CCHC domain containing 17
4	gene	130.3177	130.3333	positive	MGI_C57BL6J_5594233	Gm35074	NCBI_Gene:102638533	MGI:5594233	lncRNA gene	predicted gene, 35074
4	gene	130.3601	130.3900	positive	MGI_C57BL6J_1913835	Snrnp40	NCBI_Gene:66585,ENSEMBL:ENSMUSG00000074088	MGI:1913835	protein coding gene	small nuclear ribonucleoprotein 40 (U5)
4	gene	130.3710	130.3720	negative	MGI_C57BL6J_1922417	4930527F18Rik	NA	NA	unclassified gene	RIKEN cDNA 4930527F18 gene
4	gene	130.3799	130.3808	positive	MGI_C57BL6J_1920110	2900017G11Rik	NA	NA	unclassified gene	RIKEN cDNA 2900017G11 gene
4	gene	130.5301	130.5742	negative	MGI_C57BL6J_1914399	Nkain1	NCBI_Gene:67149,ENSEMBL:ENSMUSG00000078532	MGI:1914399	protein coding gene	Na+/K+ transporting ATPase interacting 1
4	gene	130.5723	130.5731	negative	MGI_C57BL6J_1916206	1500006G06Rik	NA	NA	unclassified gene	RIKEN cDNA 1500006G06 gene
4	gene	130.6633	130.7816	positive	MGI_C57BL6J_1931749	Pum1	NCBI_Gene:80912,ENSEMBL:ENSMUSG00000028580	MGI:1931749	protein coding gene	pumilio RNA-binding family member 1
4	gene	130.7097	130.7105	positive	MGI_C57BL6J_1919888	2810017D21Rik	NA	NA	unclassified gene	RIKEN cDNA 2810017D21 gene
4	gene	130.7496	130.7497	positive	MGI_C57BL6J_3819558	Snord85	NCBI_Gene:100217460,ENSEMBL:ENSMUSG00000065196	MGI:3819558	snoRNA gene	small nucleolar RNA, C/D box 85
4	gene	130.7586	130.7624	positive	MGI_C57BL6J_3650041	Gm12971	ENSEMBL:ENSMUSG00000087449	MGI:3650041	lncRNA gene	predicted gene 12971
4	gene	130.7663	130.7664	positive	MGI_C57BL6J_5453868	Gm24091	ENSEMBL:ENSMUSG00000093793	MGI:5453868	snoRNA gene	predicted gene, 24091
4	gene	130.7748	130.7792	negative	MGI_C57BL6J_5477010	Gm26516	ENSEMBL:ENSMUSG00000097158	MGI:5477010	lncRNA gene	predicted gene, 26516
4	gene	130.7757	130.7758	positive	MGI_C57BL6J_5453488	Gm23711	ENSEMBL:ENSMUSG00000095119	MGI:5453488	snoRNA gene	predicted gene, 23711
4	gene	130.7845	130.7880	positive	MGI_C57BL6J_3650043	Gm12972	NCBI_Gene:108168710,ENSEMBL:ENSMUSG00000086548	MGI:3650043	lncRNA gene	predicted gene 12972
4	gene	130.7925	130.8263	positive	MGI_C57BL6J_1349163	Sdc3	NCBI_Gene:20970,ENSEMBL:ENSMUSG00000025743	MGI:1349163	protein coding gene	syndecan 3
4	gene	130.8116	130.8123	negative	MGI_C57BL6J_3650040	Gm12970	ENSEMBL:ENSMUSG00000087451	MGI:3650040	lncRNA gene	predicted gene 12970
4	gene	130.8244	130.8263	negative	MGI_C57BL6J_5477210	Gm26716	ENSEMBL:ENSMUSG00000097224	MGI:5477210	lncRNA gene	predicted gene, 26716
4	gene	130.8278	130.8342	negative	MGI_C57BL6J_5625201	Gm42316	NCBI_Gene:105247171	MGI:5625201	lncRNA gene	predicted gene, 42316
4	gene	130.8578	130.8579	negative	MGI_C57BL6J_5452437	Gm22660	ENSEMBL:ENSMUSG00000077381	MGI:5452437	snoRNA gene	predicted gene, 22660
4	gene	130.8710	130.8729	positive	MGI_C57BL6J_5594453	Gm35294	NCBI_Gene:102638819	MGI:5594453	lncRNA gene	predicted gene, 35294
4	gene	130.9061	130.9146	negative	MGI_C57BL6J_5621484	Gm38599	NCBI_Gene:102642196	MGI:5621484	lncRNA gene	predicted gene, 38599
4	gene	130.9129	130.9361	positive	MGI_C57BL6J_108046	Laptm5	NCBI_Gene:16792,ENSEMBL:ENSMUSG00000028581	MGI:108046	protein coding gene	lysosomal-associated protein transmembrane 5
4	gene	130.9444	130.9555	positive	MGI_C57BL6J_106591	Matn1	NCBI_Gene:17180,ENSEMBL:ENSMUSG00000040533	MGI:106591	protein coding gene	matrilin 1, cartilage matrix protein
4	gene	130.9747	131.0013	positive	MGI_C57BL6J_3650042	Gm12973	NCBI_Gene:108168713,ENSEMBL:ENSMUSG00000085804	MGI:3650042	lncRNA gene	predicted gene 12973
4	gene	131.0008	131.0105	negative	MGI_C57BL6J_1925085	A930031H19Rik	NCBI_Gene:77835,ENSEMBL:ENSMUSG00000086262	MGI:1925085	lncRNA gene	RIKEN cDNA A930031H19 gene
4	gene	131.0639	131.0656	negative	MGI_C57BL6J_5625202	Gm42317	NCBI_Gene:105247172	MGI:5625202	lncRNA gene	predicted gene, 42317
4	gene	131.0757	131.0803	negative	MGI_C57BL6J_5594641	Gm35482	NCBI_Gene:102639082	MGI:5594641	lncRNA gene	predicted gene, 35482
4	gene	131.1563	131.1627	positive	MGI_C57BL6J_5625203	Gm42318	NCBI_Gene:105247173	MGI:5625203	lncRNA gene	predicted gene, 42318
4	gene	131.2393	131.2394	positive	MGI_C57BL6J_5455038	Gm25261	ENSEMBL:ENSMUSG00000088041	MGI:5455038	snoRNA gene	predicted gene, 25261
4	gene	131.4091	131.4283	positive	MGI_C57BL6J_5594793	Gm35634	NCBI_Gene:102639287	MGI:5594793	lncRNA gene	predicted gene, 35634
4	gene	131.4563	131.4826	positive	MGI_C57BL6J_5826360	Gm46723	NCBI_Gene:108168711	MGI:5826360	lncRNA gene	predicted gene, 46723
4	gene	131.4584	131.4855	negative	MGI_C57BL6J_5594938	Gm35779	NCBI_Gene:102639475	MGI:5594938	lncRNA gene	predicted gene, 35779
4	gene	131.4872	131.5055	positive	MGI_C57BL6J_2685677	Gm831	NCBI_Gene:329950,ENSEMBL:ENSMUSG00000078531	MGI:2685677	lncRNA gene	predicted gene 831
4	gene	131.6174	131.6351	positive	MGI_C57BL6J_5625205	Gm42320	NCBI_Gene:105247175	MGI:5625205	lncRNA gene	predicted gene, 42320
4	gene	131.6470	131.6778	negative	MGI_C57BL6J_3650901	Gm12962	ENSEMBL:ENSMUSG00000087171	MGI:3650901	lncRNA gene	predicted gene 12962
4	gene	131.6471	131.7105	negative	MGI_C57BL6J_5625206	Gm42321	NCBI_Gene:105247176	MGI:5625206	lncRNA gene	predicted gene, 42321
4	gene	131.6946	131.7105	negative	MGI_C57BL6J_3802056	Gm16080	ENSEMBL:ENSMUSG00000086856	MGI:3802056	lncRNA gene	predicted gene 16080
4	gene	131.7685	131.8383	negative	MGI_C57BL6J_1321151	Ptpru	NCBI_Gene:19273,ENSEMBL:ENSMUSG00000028909	MGI:1321151	protein coding gene	protein tyrosine phosphatase, receptor type, U
4	gene	131.8434	131.8678	positive	MGI_C57BL6J_1349441	Mecr	NCBI_Gene:26922,ENSEMBL:ENSMUSG00000028910	MGI:1349441	protein coding gene	mitochondrial trans-2-enoyl-CoA reductase
4	gene	131.8736	131.9017	positive	MGI_C57BL6J_1890577	Srsf4	NCBI_Gene:57317,ENSEMBL:ENSMUSG00000028911	MGI:1890577	protein coding gene	serine/arginine-rich splicing factor 4
4	gene	131.8786	131.8832	positive	MGI_C57BL6J_2442442	A930004J17Rik	ENSEMBL:ENSMUSG00000102602	MGI:2442442	unclassified gene	RIKEN cDNA A930004J17 gene
4	gene	131.8879	131.8894	positive	MGI_C57BL6J_1918083	4733401A01Rik	NA	NA	unclassified gene	RIKEN cDNA 4733401A01 gene
4	gene	131.8995	131.9200	negative	MGI_C57BL6J_3702644	Gm12992	NCBI_Gene:545681,ENSEMBL:ENSMUSG00000085667	MGI:3702644	lncRNA gene	predicted gene 12992
4	pseudogene	131.9027	131.9033	negative	MGI_C57BL6J_3705382	Gm12978	NCBI_Gene:100418326,ENSEMBL:ENSMUSG00000083013	MGI:3705382	pseudogene	predicted gene 12978
4	gene	131.9200	131.9240	positive	MGI_C57BL6J_3646343	Tmem200b	NCBI_Gene:623230,ENSEMBL:ENSMUSG00000070720	MGI:3646343	protein coding gene	transmembrane protein 200B
4	gene	131.9208	131.9215	negative	MGI_C57BL6J_6324745	Gm50475	ENSEMBL:ENSMUSG00000118394	MGI:6324745	lncRNA gene	predicted gene, 50475
4	gene	131.9234	132.0756	negative	MGI_C57BL6J_95401	Epb41	NCBI_Gene:269587,ENSEMBL:ENSMUSG00000028906	MGI:95401	protein coding gene	erythrocyte membrane protein band 4.1
4	gene	131.9922	131.9923	negative	MGI_C57BL6J_5530827	Gm27445	ENSEMBL:ENSMUSG00000098577	MGI:5530827	miRNA gene	predicted gene, 27445
4	gene	132.0482	132.0490	positive	MGI_C57BL6J_3649474	Gm13063	ENSEMBL:ENSMUSG00000084869	MGI:3649474	lncRNA gene	predicted gene 13063
4	gene	132.0495	132.0498	positive	MGI_C57BL6J_5595316	Gm36157	NCBI_Gene:102639968	MGI:5595316	lncRNA gene	predicted gene, 36157
4	gene	132.0747	132.0770	positive	MGI_C57BL6J_3641670	Gm10300	ENSEMBL:ENSMUSG00000070717	MGI:3641670	protein coding gene	predicted gene 10300
4	pseudogene	132.0939	132.0943	positive	MGI_C57BL6J_3650812	Gm13214	ENSEMBL:ENSMUSG00000083368	MGI:3650812	pseudogene	predicted gene 13214
4	gene	132.1048	132.1094	negative	MGI_C57BL6J_5610939	Gm37711	ENSEMBL:ENSMUSG00000102796	MGI:5610939	unclassified gene	predicted gene, 37711
4	gene	132.1077	132.1445	negative	MGI_C57BL6J_97438	Oprd1	NCBI_Gene:18386,ENSEMBL:ENSMUSG00000050511	MGI:97438	protein coding gene	opioid receptor, delta 1
4	gene	132.1253	132.1253	positive	MGI_C57BL6J_4413695	n-TAcgc3	NCBI_Gene:102467236	MGI:4413695	tRNA gene	nuclear encoded tRNA alanine 3 (anticodon CGC)
4	pseudogene	132.1484	132.1489	negative	MGI_C57BL6J_3650813	Gm13215	NCBI_Gene:664894,ENSEMBL:ENSMUSG00000081394	MGI:3650813	pseudogene	predicted gene 13215
4	gene	132.1849	132.2123	negative	MGI_C57BL6J_2444233	Ythdf2	NCBI_Gene:213541,ENSEMBL:ENSMUSG00000040025	MGI:2444233	protein coding gene	YTH N6-methyladenosine RNA binding protein 2
4	gene	132.2184	132.2185	negative	MGI_C57BL6J_5451810	Gm22033	ENSEMBL:ENSMUSG00000080597	MGI:5451810	miRNA gene	predicted gene, 22033
4	pseudogene	132.2199	132.2206	negative	MGI_C57BL6J_3652187	Rps15a-ps4	NCBI_Gene:664903,ENSEMBL:ENSMUSG00000083757	MGI:3652187	pseudogene	ribosomal protein S15A, pseudogene 4
4	gene	132.2210	132.2616	negative	MGI_C57BL6J_2135604	Gmeb1	NCBI_Gene:56809,ENSEMBL:ENSMUSG00000028901	MGI:2135604	protein coding gene	glucocorticoid modulatory element binding protein 1
4	pseudogene	132.2447	132.2460	negative	MGI_C57BL6J_3651953	Gm13252	NCBI_Gene:105247177,ENSEMBL:ENSMUSG00000084105	MGI:3651953	pseudogene	predicted gene 13252
4	gene	132.2605	132.2688	positive	MGI_C57BL6J_5579580	Gm28874	NCBI_Gene:102640216,ENSEMBL:ENSMUSG00000100813	MGI:5579580	lncRNA gene	predicted gene 28874
4	gene	132.2701	132.2702	positive	MGI_C57BL6J_5579578	Gm28872	ENSEMBL:ENSMUSG00000099937	MGI:5579578	lncRNA gene	predicted gene 28872
4	gene	132.2701	132.2702	negative	MGI_C57BL6J_2148804	Rnu11	NCBI_Gene:353373,ENSEMBL:ENSMUSG00000077323	MGI:2148804	snRNA gene	U11 small nuclear RNA
4	gene	132.2741	132.2743	negative	MGI_C57BL6J_3629726	Gt(pU21)115Imeg	NA	NA	unclassified gene	gene trap 115%2c Institute of Molecular Embryology and Genetics
4	gene	132.2744	132.2958	positive	MGI_C57BL6J_1913714	Taf12	NCBI_Gene:66464,ENSEMBL:ENSMUSG00000028899	MGI:1913714	protein coding gene	TATA-box binding protein associated factor 12
4	gene	132.3004	132.3034	negative	MGI_C57BL6J_2441753	Rab42	NCBI_Gene:242681,ENSEMBL:ENSMUSG00000089687	MGI:2441753	protein coding gene	RAB42, member RAS oncogene family
4	gene	132.3086	132.3110	positive	MGI_C57BL6J_1916721	Snhg12	NCBI_Gene:100039864,ENSEMBL:ENSMUSG00000086290	MGI:1916721	lncRNA gene	small nucleolar RNA host gene 12
4	gene	132.3095	132.3096	positive	MGI_C57BL6J_4361141	Snora16a	NCBI_Gene:100310813,ENSEMBL:ENSMUSG00000065097,ENSEMBL:ENSMUSG00000105911	MGI:4361141	snoRNA gene	small nucleolar RNA, H/ACA box 16A
4	gene	132.3099	132.3101	positive	MGI_C57BL6J_3819506	Snora44	NCBI_Gene:100217418,ENSEMBL:ENSMUSG00000064604	MGI:3819506	snoRNA gene	small nucleolar RNA, H/ACA box 44
4	gene	132.3102	132.3104	positive	MGI_C57BL6J_3819510	Snora61	NCBI_Gene:100217440,ENSEMBL:ENSMUSG00000064949	MGI:3819510	snoRNA gene	small nucleolar RNA, H/ACA box 61
4	gene	132.3107	132.3108	positive	MGI_C57BL6J_3819570	Snord99	NCBI_Gene:100217437,ENSEMBL:ENSMUSG00000080615	MGI:3819570	snoRNA gene	small nucleolar RNA, C/D box 99
4	gene	132.3118	132.3295	negative	MGI_C57BL6J_1919037	Trnau1ap	NCBI_Gene:71787,ENSEMBL:ENSMUSG00000028898	MGI:1919037	protein coding gene	tRNA selenocysteine 1 associated protein 1
4	gene	132.3319	132.3536	negative	MGI_C57BL6J_1913989	Rcc1	NCBI_Gene:100088,ENSEMBL:ENSMUSG00000028896	MGI:1913989	protein coding gene	regulator of chromosome condensation 1
4	gene	132.3480	132.3537	negative	MGI_C57BL6J_2684817	Snhg3	NCBI_Gene:399101,ENSEMBL:ENSMUSG00000085241	MGI:2684817	lncRNA gene	small nucleolar RNA host gene 3
4	gene	132.3518	132.3534	positive	MGI_C57BL6J_4936934	Gm17300	ENSEMBL:ENSMUSG00000091021	MGI:4936934	lncRNA gene	predicted gene, 17300
4	gene	132.3523	132.3525	negative	MGI_C57BL6J_4360049	Snora73b	NCBI_Gene:100306945,ENSEMBL:ENSMUSG00000065353	MGI:4360049	snoRNA gene	small nucleolar RNA, H/ACA box 73b
4	gene	132.3528	132.3530	negative	MGI_C57BL6J_4360046	Snora73a	NCBI_Gene:100306944,ENSEMBL:ENSMUSG00000064387	MGI:4360046	snoRNA gene	small nucleolar RNA, H/ACA box 73a
4	gene	132.3559	132.4225	negative	MGI_C57BL6J_2140327	Phactr4	NCBI_Gene:100169,ENSEMBL:ENSMUSG00000066043	MGI:2140327	protein coding gene	phosphatase and actin regulator 4
4	gene	132.4083	132.4084	positive	MGI_C57BL6J_5455484	Gm25707	ENSEMBL:ENSMUSG00000096350	MGI:5455484	miRNA gene	predicted gene, 25707
4	gene	132.4420	132.4421	positive	MGI_C57BL6J_5452832	Gm23055	ENSEMBL:ENSMUSG00000064739	MGI:5452832	snRNA gene	predicted gene, 23055
4	gene	132.4587	132.4639	negative	MGI_C57BL6J_1914469	Med18	NCBI_Gene:67219,ENSEMBL:ENSMUSG00000066042	MGI:1914469	protein coding gene	mediator complex subunit 18
4	gene	132.4920	132.5105	negative	MGI_C57BL6J_2651874	Sesn2	NCBI_Gene:230784,ENSEMBL:ENSMUSG00000028893	MGI:2651874	protein coding gene	sestrin 2
4	gene	132.5036	132.5096	negative	MGI_C57BL6J_3651528	Gm12981	ENSEMBL:ENSMUSG00000086997	MGI:3651528	lncRNA gene	predicted gene 12981
4	gene	132.5160	132.5161	positive	MGI_C57BL6J_4413681	n-TAagc8	NCBI_Gene:102467230	MGI:4413681	tRNA gene	nuclear encoded tRNA alanine 8 (anticodon AGC)
4	gene	132.5306	132.5354	negative	MGI_C57BL6J_1196457	Atpif1	NCBI_Gene:11983,ENSEMBL:ENSMUSG00000054428	MGI:1196457	protein coding gene	ATPase inhibitory factor 1
4	gene	132.5327	132.5336	positive	MGI_C57BL6J_3651167	Gm12999	ENSEMBL:ENSMUSG00000087352	MGI:3651167	lncRNA gene	predicted gene 12999
4	gene	132.5356	132.5537	positive	MGI_C57BL6J_1915848	Dnajc8	NCBI_Gene:68598,ENSEMBL:ENSMUSG00000054405	MGI:1915848	protein coding gene	DnaJ heat shock protein family (Hsp40) member C8
4	gene	132.5471	132.5472	negative	MGI_C57BL6J_5454539	Gm24762	ENSEMBL:ENSMUSG00000065623	MGI:5454539	snRNA gene	predicted gene, 24762
4	gene	132.5641	132.5827	positive	MGI_C57BL6J_106066	Ptafr	NCBI_Gene:19204,ENSEMBL:ENSMUSG00000056529	MGI:106066	protein coding gene	platelet-activating factor receptor
4	gene	132.6390	132.7248	positive	MGI_C57BL6J_109339	Eya3	NCBI_Gene:14050,ENSEMBL:ENSMUSG00000028886	MGI:109339	protein coding gene	EYA transcriptional coactivator and phosphatase 3
4	gene	132.6391	132.6403	positive	MGI_C57BL6J_1923270	5830409B07Rik	NA	NA	unclassified gene	RIKEN cDNA 5830409B07 gene
4	gene	132.7249	132.7326	negative	MGI_C57BL6J_2685877	Xkr8	NCBI_Gene:381560,ENSEMBL:ENSMUSG00000037752	MGI:2685877	protein coding gene	X-linked Kx blood group related 8
4	gene	132.7330	132.7573	negative	MGI_C57BL6J_1916022	Smpdl3b	NCBI_Gene:100340,ENSEMBL:ENSMUSG00000028885	MGI:1916022	protein coding gene	sphingomyelin phosphodiesterase, acid-like 3B
4	gene	132.7683	132.7788	positive	MGI_C57BL6J_1339939	Rpa2	NCBI_Gene:19891,ENSEMBL:ENSMUSG00000028884	MGI:1339939	protein coding gene	replication protein A2
4	gene	132.7818	132.7964	negative	MGI_C57BL6J_2446213	Themis2	NCBI_Gene:230787,ENSEMBL:ENSMUSG00000037731	MGI:2446213	protein coding gene	thymocyte selection associated family member 2
4	pseudogene	132.8020	132.8023	negative	MGI_C57BL6J_3651775	Gm13022	ENSEMBL:ENSMUSG00000081647	MGI:3651775	pseudogene	predicted gene 13022
4	gene	132.8269	132.8432	negative	MGI_C57BL6J_2140494	Ppp1r8	NCBI_Gene:100336,ENSEMBL:ENSMUSG00000028882	MGI:2140494	protein coding gene	protein phosphatase 1, regulatory subunit 8
4	gene	132.8384	132.8385	negative	MGI_C57BL6J_5452544	Gm22767	ENSEMBL:ENSMUSG00000088990	MGI:5452544	snoRNA gene	predicted gene, 22767
4	gene	132.8535	132.8845	negative	MGI_C57BL6J_1931027	Stx12	NCBI_Gene:100226,ENSEMBL:ENSMUSG00000028879	MGI:1931027	protein coding gene	syntaxin 12
4	gene	132.8822	132.8833	negative	MGI_C57BL6J_1924875	C530007A02Rik	NA	NA	unclassified gene	RIKEN cDNA C530007A02 gene
4	pseudogene	132.8848	132.8866	positive	MGI_C57BL6J_3649305	Gm13033	NCBI_Gene:100038703,ENSEMBL:ENSMUSG00000083816	MGI:3649305	pseudogene	predicted gene 13033
4	gene	132.8992	132.9231	negative	MGI_C57BL6J_2385211	Fam76a	NCBI_Gene:230789,ENSEMBL:ENSMUSG00000028878	MGI:2385211	protein coding gene	family with sequence similarity 76, member A
4	gene	132.9312	132.9313	negative	MGI_C57BL6J_5454690	Gm24913	ENSEMBL:ENSMUSG00000087911	MGI:5454690	snRNA gene	predicted gene, 24913
4	gene	132.9484	132.9607	negative	MGI_C57BL6J_5595677	Gm36518	NCBI_Gene:102640462	MGI:5595677	lncRNA gene	predicted gene, 36518
4	gene	132.9741	133.0019	positive	MGI_C57BL6J_95527	Fgr	NCBI_Gene:14191,ENSEMBL:ENSMUSG00000028874	MGI:95527	protein coding gene	FGR proto-oncogene, Src family tyrosine kinase
4	gene	133.0027	133.0082	negative	MGI_C57BL6J_5595758	Gm36599	NCBI_Gene:102640565	MGI:5595758	lncRNA gene	predicted gene, 36599
4	gene	133.0113	133.0781	positive	MGI_C57BL6J_2444218	Ahdc1	NCBI_Gene:230793,ENSEMBL:ENSMUSG00000037692	MGI:2444218	protein coding gene	AT hook, DNA binding motif, containing 1
4	gene	133.0834	133.0891	positive	MGI_C57BL6J_5477109	Gm26615	NCBI_Gene:102640635,ENSEMBL:ENSMUSG00000097088	MGI:5477109	lncRNA gene	predicted gene, 26615
4	gene	133.1145	133.1146	negative	MGI_C57BL6J_4413870	n-TGgcc1	NCBI_Gene:102467429	MGI:4413870	tRNA gene	nuclear encoded tRNA glycine 1 (anticodon GCC)
4	gene	133.1305	133.1998	positive	MGI_C57BL6J_1098641	Wasf2	NCBI_Gene:242687,ENSEMBL:ENSMUSG00000028868	MGI:1098641	protein coding gene	WAS protein family, member 2
4	gene	133.1714	133.1717	negative	MGI_C57BL6J_5454413	Gm24636	ENSEMBL:ENSMUSG00000089298	MGI:5454413	unclassified non-coding RNA gene	predicted gene, 24636
4	gene	133.1957	133.1957	positive	MGI_C57BL6J_5531327	Mir7017	miRBase:MI0022866,NCBI_Gene:102466215,ENSEMBL:ENSMUSG00000099202	MGI:5531327	miRNA gene	microRNA 7017
4	gene	133.2093	133.2125	negative	MGI_C57BL6J_101908	Gpr3	NCBI_Gene:14748,ENSEMBL:ENSMUSG00000049649	MGI:101908	protein coding gene	G-protein coupled receptor 3
4	gene	133.2121	133.2246	positive	MGI_C57BL6J_1916905	Cd164l2	NCBI_Gene:69655,ENSEMBL:ENSMUSG00000028865	MGI:1916905	protein coding gene	CD164 sialomucin-like 2
4	pseudogene	133.2315	133.2393	positive	MGI_C57BL6J_3510254	Fcnc-ps	NCBI_Gene:493918	MGI:3510254	pseudogene	ficolin C pseudogene
4	gene	133.2397	133.2529	positive	MGI_C57BL6J_1855691	Map3k6	NCBI_Gene:53608,ENSEMBL:ENSMUSG00000028862	MGI:1855691	protein coding gene	mitogen-activated protein kinase kinase kinase 6
4	gene	133.2531	133.2631	negative	MGI_C57BL6J_1933365	Sytl1	NCBI_Gene:269589,ENSEMBL:ENSMUSG00000028860	MGI:1933365	protein coding gene	synaptotagmin-like 1
4	gene	133.2660	133.2778	negative	MGI_C57BL6J_1098568	Tmem222	NCBI_Gene:52174,ENSEMBL:ENSMUSG00000028857	MGI:1098568	protein coding gene	transmembrane protein 222
4	pseudogene	133.2809	133.2813	negative	MGI_C57BL6J_3700962	Gm13259	ENSEMBL:ENSMUSG00000083241	MGI:3700962	pseudogene	predicted gene 13259
4	gene	133.2925	133.3535	negative	MGI_C57BL6J_2685541	Wdtc1	NCBI_Gene:230796,ENSEMBL:ENSMUSG00000037622	MGI:2685541	protein coding gene	WD and tetratricopeptide repeats 1
4	gene	133.2925	133.2928	positive	MGI_C57BL6J_3781803	Gm3627	NA	NA	protein coding gene	predicted gene 3627
4	gene	133.3697	133.4237	positive	MGI_C57BL6J_102462	Slc9a1	NCBI_Gene:20544,ENSEMBL:ENSMUSG00000028854	MGI:102462	protein coding gene	solute carrier family 9 (sodium/hydrogen exchanger), member 1
4	gene	133.3698	133.3699	positive	MGI_C57BL6J_4950447	Mir5122	miRBase:MI0018031,NCBI_Gene:100628620,ENSEMBL:ENSMUSG00000092745	MGI:4950447	miRNA gene	microRNA 5122
4	gene	133.4327	133.4349	negative	MGI_C57BL6J_1920802	1700091J24Rik	NCBI_Gene:105247178	MGI:1920802	lncRNA gene	RIKEN cDNA 1700091J24 gene
4	gene	133.4371	133.4404	negative	MGI_C57BL6J_5625207	Gm42322	NCBI_Gene:105247179	MGI:5625207	lncRNA gene	predicted gene, 42322
4	gene	133.4794	133.4852	negative	MGI_C57BL6J_3651057	Gm13257	NCBI_Gene:102640829,ENSEMBL:ENSMUSG00000086850	MGI:3651057	lncRNA gene	predicted gene 13257
4	gene	133.4801	133.4879	positive	MGI_C57BL6J_2140500	Tent5b	NCBI_Gene:100342,ENSEMBL:ENSMUSG00000046694	MGI:2140500	protein coding gene	terminal nucleotidyltransferase 5B
4	gene	133.4911	133.4992	negative	MGI_C57BL6J_1916789	Trnp1	NCBI_Gene:69539,ENSEMBL:ENSMUSG00000056596	MGI:1916789	protein coding gene	TMF1-regulated nuclear protein 1
4	gene	133.5129	133.5223	negative	MGI_C57BL6J_5625208	Gm42323	NCBI_Gene:105247180	MGI:5625208	protein coding gene	predicted gene, 42323
4	gene	133.5189	133.5308	positive	MGI_C57BL6J_1916323	Kdf1	NCBI_Gene:69073,ENSEMBL:ENSMUSG00000037600	MGI:1916323	protein coding gene	keratinocyte differentiation factor 1
4	gene	133.5325	133.5460	negative	MGI_C57BL6J_106014	Nudc	NCBI_Gene:18221,ENSEMBL:ENSMUSG00000028851	MGI:106014	protein coding gene	nudC nuclear distribution protein
4	gene	133.5534	133.5567	positive	MGI_C57BL6J_1346344	Nr0b2	NCBI_Gene:23957,ENSEMBL:ENSMUSG00000037583	MGI:1346344	protein coding gene	nuclear receptor subfamily 0, group B, member 2
4	gene	133.5588	133.5589	negative	MGI_C57BL6J_5452935	Gm23158	ENSEMBL:ENSMUSG00000093886	MGI:5452935	miRNA gene	predicted gene, 23158
4	gene	133.5747	133.5842	positive	MGI_C57BL6J_2442492	Gpatch3	NCBI_Gene:242691,ENSEMBL:ENSMUSG00000028850	MGI:2442492	protein coding gene	G patch domain containing 3
4	gene	133.5844	133.5917	positive	MGI_C57BL6J_2140368	Gpn2	NCBI_Gene:100210,ENSEMBL:ENSMUSG00000028848	MGI:2140368	protein coding gene	GPN-loop GTPase 2
4	gene	133.5949	133.5960	negative	MGI_C57BL6J_5625209	Gm42324	NCBI_Gene:105247181	MGI:5625209	lncRNA gene	predicted gene, 42324
4	gene	133.6006	133.6022	negative	MGI_C57BL6J_1891831	Sfn	NCBI_Gene:55948,ENSEMBL:ENSMUSG00000047281	MGI:1891831	protein coding gene	stratifin
4	gene	133.6047	133.6502	negative	MGI_C57BL6J_3527792	Zdhhc18	NCBI_Gene:503610,ENSEMBL:ENSMUSG00000037553	MGI:3527792	protein coding gene	zinc finger, DHHC domain containing 18
4	pseudogene	133.6381	133.6506	negative	MGI_C57BL6J_3651606	Gm13213	NCBI_Gene:545683,ENSEMBL:ENSMUSG00000083885	MGI:3651606	pseudogene	predicted gene 13213
4	gene	133.6540	133.6543	positive	MGI_C57BL6J_5452439	Gm22662	ENSEMBL:ENSMUSG00000093031	MGI:5452439	unclassified non-coding RNA gene	predicted gene, 22662
4	gene	133.6599	133.6732	negative	MGI_C57BL6J_2442480	Pigv	NCBI_Gene:230801,ENSEMBL:ENSMUSG00000043257	MGI:2442480	protein coding gene	phosphatidylinositol glycan anchor biosynthesis, class V
4	gene	133.6727	133.6732	positive	MGI_C57BL6J_1920565	1700041L08Rik	NA	NA	unclassified gene	RIKEN cDNA 1700041L08 gene
4	gene	133.6790	133.7568	negative	MGI_C57BL6J_1935147	Arid1a	NCBI_Gene:93760,ENSEMBL:ENSMUSG00000007880	MGI:1935147	protein coding gene	AT rich interactive domain 1A (SWI-like)
4	gene	133.7171	133.7171	negative	MGI_C57BL6J_5562763	Mir7227	miRBase:MI0023722,NCBI_Gene:102465707,ENSEMBL:ENSMUSG00000104566	MGI:5562763	miRNA gene	microRNA 7227
4	gene	133.7681	133.7754	negative	MGI_C57BL6J_5589178	Gm30019	NCBI_Gene:102631762	MGI:5589178	lncRNA gene	predicted gene, 30019
4	gene	133.7750	133.7813	positive	MGI_C57BL6J_5589101	Gm29942	NCBI_Gene:102631659	MGI:5589101	lncRNA gene	predicted gene, 29942
4	gene	133.7920	133.8215	negative	MGI_C57BL6J_5593455	Gm34296	NCBI_Gene:102637505	MGI:5593455	lncRNA gene	predicted gene, 34296
4	gene	133.7976	133.7977	negative	MGI_C57BL6J_5455047	Gm25270	ENSEMBL:ENSMUSG00000084555	MGI:5455047	snRNA gene	predicted gene, 25270
4	gene	133.8152	133.8216	positive	MGI_C57BL6J_3650037	Gm12974	NCBI_Gene:105247182,ENSEMBL:ENSMUSG00000084789	MGI:3650037	lncRNA gene	predicted gene 12974
4	gene	133.8473	133.8878	negative	MGI_C57BL6J_104558	Rps6ka1	NCBI_Gene:20111,ENSEMBL:ENSMUSG00000003644	MGI:104558	protein coding gene	ribosomal protein S6 kinase polypeptide 1
4	gene	133.8716	133.8772	positive	MGI_C57BL6J_3650699	Gm12977	NCBI_Gene:102631939,ENSEMBL:ENSMUSG00000085009	MGI:3650699	lncRNA gene	predicted gene 12977
4	pseudogene	133.8829	133.8831	negative	MGI_C57BL6J_3651383	Gm12985	ENSEMBL:ENSMUSG00000080946	MGI:3651383	pseudogene	predicted gene 12985
4	gene	133.8834	133.8835	negative	MGI_C57BL6J_5452300	Gm22523	ENSEMBL:ENSMUSG00000089321	MGI:5452300	snRNA gene	predicted gene, 22523
4	gene	133.9110	133.9114	negative	MGI_C57BL6J_1921148	4930429E23Rik	NA	NA	unclassified gene	RIKEN cDNA 4930429E23 gene
4	gene	133.9647	133.9686	negative	MGI_C57BL6J_96136	Hmgn2	NCBI_Gene:15331,ENSEMBL:ENSMUSG00000003038	MGI:96136	protein coding gene	high mobility group nucleosomal binding domain 2
4	gene	133.9690	134.0009	negative	MGI_C57BL6J_1914672	Dhdds	NCBI_Gene:67422,ENSEMBL:ENSMUSG00000012117	MGI:1914672	protein coding gene	dehydrodolichyl diphosphate synthase
4	gene	134.0033	134.0192	negative	MGI_C57BL6J_1890546	Lin28a	NCBI_Gene:83557,ENSEMBL:ENSMUSG00000050966	MGI:1890546	protein coding gene	lin-28 homolog A (C. elegans)
4	gene	134.0034	134.0049	positive	MGI_C57BL6J_3710625	Gm10299	NA	NA	unclassified gene	predicted gene 10299
4	gene	134.0181	134.0199	positive	MGI_C57BL6J_3650259	Gm13061	ENSEMBL:ENSMUSG00000087288	MGI:3650259	lncRNA gene	predicted gene 13061
4	gene	134.0512	134.0590	positive	MGI_C57BL6J_3650254	Zfp683	NCBI_Gene:100503878,ENSEMBL:ENSMUSG00000049410	MGI:3650254	protein coding gene	zinc finger protein 683
4	gene	134.0607	134.0925	positive	MGI_C57BL6J_1334463	Crybg2	NCBI_Gene:230806,ENSEMBL:ENSMUSG00000012123	MGI:1334463	protein coding gene	crystallin beta-gamma domain containing 2
4	gene	134.0824	134.0951	negative	MGI_C57BL6J_1346088	Cd52	NCBI_Gene:23833,ENSEMBL:ENSMUSG00000000682	MGI:1346088	protein coding gene	CD52 antigen
4	gene	134.1025	134.1276	positive	MGI_C57BL6J_1914836	Ubxn11	NCBI_Gene:67586,ENSEMBL:ENSMUSG00000012126	MGI:1914836	protein coding gene	UBX domain protein 11
4	gene	134.1274	134.1288	negative	MGI_C57BL6J_1920973	Sh3bgrl3	NCBI_Gene:73723,ENSEMBL:ENSMUSG00000028843	MGI:1920973	protein coding gene	SH3 domain binding glutamic acid-rich protein-like 3
4	gene	134.1299	134.1871	negative	MGI_C57BL6J_1917262	Cep85	NCBI_Gene:70012,ENSEMBL:ENSMUSG00000037443	MGI:1917262	protein coding gene	centrosomal protein 85
4	gene	134.1600	134.1641	positive	MGI_C57BL6J_5826531	Gm46894	NCBI_Gene:108169013	MGI:5826531	protein coding gene	predicted gene, 46894
4	gene	134.1678	134.1679	negative	MGI_C57BL6J_5531001	Gm27619	ENSEMBL:ENSMUSG00000098693	MGI:5531001	snoRNA gene	predicted gene, 27619
4	gene	134.1908	134.2030	negative	MGI_C57BL6J_3702974	Gm7534	NCBI_Gene:665186,ENSEMBL:ENSMUSG00000073747	MGI:3702974	protein coding gene	predicted gene 7534
4	pseudogene	134.1998	134.2002	negative	MGI_C57BL6J_3651062	Gm13131	ENSEMBL:ENSMUSG00000081772	MGI:3651062	pseudogene	predicted gene 13131
4	gene	134.2120	134.2274	negative	MGI_C57BL6J_3043288	Catsper4	NCBI_Gene:329954,ENSEMBL:ENSMUSG00000048003	MGI:3043288	protein coding gene	cation channel, sperm associated 4
4	gene	134.2280	134.2384	negative	MGI_C57BL6J_2670958	Cnksr1	NCBI_Gene:194231,ENSEMBL:ENSMUSG00000028841	MGI:2670958	protein coding gene	connector enhancer of kinase suppressor of Ras 1
4	gene	134.2433	134.2456	negative	MGI_C57BL6J_1915290	Zfp593	NCBI_Gene:68040,ENSEMBL:ENSMUSG00000028840	MGI:1915290	protein coding gene	zinc finger protein 593
4	gene	134.2437	134.2459	positive	MGI_C57BL6J_3528958	E130218I03Rik	NCBI_Gene:77490,ENSEMBL:ENSMUSG00000086322	MGI:3528958	lncRNA gene	RIKEN cDNA E130218I03 gene
4	gene	134.2469	134.2500	positive	MGI_C57BL6J_5589350	Gm30191	ENSEMBL:ENSMUSG00000108398	MGI:5589350	protein coding gene	predicted gene, 30191
4	gene	134.2511	134.2662	negative	MGI_C57BL6J_1919940	Grrp1	NCBI_Gene:72690,ENSEMBL:ENSMUSG00000050105	MGI:1919940	protein coding gene	glycine/arginine rich protein 1
4	gene	134.2558	134.2657	positive	MGI_C57BL6J_5625210	Gm42325	NCBI_Gene:105247183	MGI:5625210	lncRNA gene	predicted gene, 42325
4	gene	134.2750	134.2879	negative	MGI_C57BL6J_2385213	Pdik1l	NCBI_Gene:230809,ENSEMBL:ENSMUSG00000050890	MGI:2385213	protein coding gene	PDLIM1 interacting kinase 1 like
4	gene	134.3151	134.3296	positive	MGI_C57BL6J_2447992	Trim63	NCBI_Gene:433766,ENSEMBL:ENSMUSG00000028834	MGI:2447992	protein coding gene	tripartite motif-containing 63
4	pseudogene	134.3355	134.3358	negative	MGI_C57BL6J_3652269	Gm13195	ENSEMBL:ENSMUSG00000083065	MGI:3652269	pseudogene	predicted gene 13195
4	gene	134.3430	134.3545	positive	MGI_C57BL6J_106637	Slc30a2	NCBI_Gene:230810,ENSEMBL:ENSMUSG00000028836	MGI:106637	protein coding gene	solute carrier family 30 (zinc transporter), member 2
4	gene	134.3564	134.3838	negative	MGI_C57BL6J_1888742	Extl1	NCBI_Gene:56219,ENSEMBL:ENSMUSG00000028838	MGI:1888742	protein coding gene	exostoses (multiple)-like 1
4	gene	134.3849	134.3870	positive	MGI_C57BL6J_3779501	Gm5589	NA	NA	unclassified gene	predicted gene 5589
4	gene	134.3963	134.4274	positive	MGI_C57BL6J_2140321	Pafah2	NCBI_Gene:100163,ENSEMBL:ENSMUSG00000037366	MGI:2140321	protein coding gene	platelet-activating factor acetylhydrolase 2
4	gene	134.4337	134.4483	negative	MGI_C57BL6J_5589612	Gm30453	NCBI_Gene:102632361	MGI:5589612	lncRNA gene	predicted gene, 30453
4	gene	134.4488	134.4502	negative	MGI_C57BL6J_1916659	1700021N21Rik	NCBI_Gene:69409,ENSEMBL:ENSMUSG00000087343	MGI:1916659	lncRNA gene	RIKEN cDNA 1700021N21 gene
4	gene	134.4683	134.4738	positive	MGI_C57BL6J_96739	Stmn1	NCBI_Gene:16765,ENSEMBL:ENSMUSG00000028832	MGI:96739	protein coding gene	stathmin 1
4	gene	134.4684	134.4685	positive	MGI_C57BL6J_5453411	Gm23634	ENSEMBL:ENSMUSG00000092812	MGI:5453411	miRNA gene	predicted gene, 23634
4	pseudogene	134.4932	134.4940	positive	MGI_C57BL6J_3650425	Gm13250	NCBI_Gene:100416260,ENSEMBL:ENSMUSG00000083001	MGI:3650425	pseudogene	predicted gene 13250
4	gene	134.4967	134.5102	positive	MGI_C57BL6J_1919154	Paqr7	NCBI_Gene:71904,ENSEMBL:ENSMUSG00000037348	MGI:1919154	protein coding gene	progestin and adipoQ receptor family member VII
4	gene	134.5110	134.5239	positive	MGI_C57BL6J_1917135	Aunip	NCBI_Gene:69885,ENSEMBL:ENSMUSG00000078521	MGI:1917135	protein coding gene	aurora kinase A and ninein interacting protein
4	gene	134.5256	134.5354	negative	MGI_C57BL6J_1924074	Mtfr1l	NCBI_Gene:76824,ENSEMBL:ENSMUSG00000046671	MGI:1924074	protein coding gene	mitochondrial fission regulator 1-like
4	gene	134.5379	134.5522	negative	MGI_C57BL6J_2151208	Selenon	NCBI_Gene:74777,ENSEMBL:ENSMUSG00000050989	MGI:2151208	protein coding gene	selenoprotein N
4	gene	134.5617	134.7043	negative	MGI_C57BL6J_2446214	Man1c1	NCBI_Gene:230815,ENSEMBL:ENSMUSG00000037306	MGI:2446214	protein coding gene	mannosidase, alpha, class 1C, member 1
4	gene	134.5677	134.5679	negative	MGI_C57BL6J_5531374	Mir6403	miRBase:MI0021939,NCBI_Gene:102465216,ENSEMBL:ENSMUSG00000099289	MGI:5531374	miRNA gene	microRNA 6403
4	gene	134.5914	134.5950	positive	MGI_C57BL6J_5625211	Gm42326	NCBI_Gene:105247184	MGI:5625211	lncRNA gene	predicted gene, 42326
4	gene	134.7416	134.7680	negative	MGI_C57BL6J_2140175	Ldlrap1	NCBI_Gene:100017,ENSEMBL:ENSMUSG00000037295	MGI:2140175	protein coding gene	low density lipoprotein receptor adaptor protein 1
4	gene	134.8028	134.8536	negative	MGI_C57BL6J_1913396	Maco1	NCBI_Gene:66146,ENSEMBL:ENSMUSG00000028826	MGI:1913396	protein coding gene	macoilin 1
4	gene	134.8645	134.8962	positive	MGI_C57BL6J_1202882	Rhd	NCBI_Gene:19746,ENSEMBL:ENSMUSG00000028825	MGI:1202882	protein coding gene	Rh blood group, D antigen
4	gene	134.8978	134.9150	negative	MGI_C57BL6J_1919067	Tmem50a	NCBI_Gene:71817,ENSEMBL:ENSMUSG00000028822	MGI:1919067	protein coding gene	transmembrane protein 50A
4	gene	134.9236	134.9277	positive	MGI_C57BL6J_106498	Rsrp1	NCBI_Gene:27981,ENSEMBL:ENSMUSG00000037266	MGI:106498	protein coding gene	arginine/serine rich protein 1
4	gene	134.9309	134.9375	positive	MGI_C57BL6J_1915842	Syf2	NCBI_Gene:68592,ENSEMBL:ENSMUSG00000028821	MGI:1915842	protein coding gene	SYF2 homolog, RNA splicing factor (S. cerevisiae)
4	gene	135.0437	135.0514	negative	MGI_C57BL6J_5625212	Gm42327	NCBI_Gene:105247185	MGI:5625212	lncRNA gene	predicted gene, 42327
4	gene	135.1182	135.1204	negative	MGI_C57BL6J_3801903	Gm16225	ENSEMBL:ENSMUSG00000086884	MGI:3801903	lncRNA gene	predicted gene 16225
4	gene	135.1206	135.1780	positive	MGI_C57BL6J_102672	Runx3	NCBI_Gene:12399,ENSEMBL:ENSMUSG00000070691	MGI:102672	protein coding gene	runt related transcription factor 3
4	gene	135.1434	135.1443	negative	MGI_C57BL6J_3801902	Gm16224	ENSEMBL:ENSMUSG00000084986	MGI:3801902	lncRNA gene	predicted gene 16224
4	gene	135.2140	135.2728	negative	MGI_C57BL6J_1352754	Clic4	NCBI_Gene:29876,ENSEMBL:ENSMUSG00000037242	MGI:1352754	protein coding gene	chloride intracellular channel 4 (mitochondrial)
4	gene	135.2831	135.2891	positive	MGI_C57BL6J_5589926	Gm30767	NCBI_Gene:102632783	MGI:5589926	lncRNA gene	predicted gene, 30767
4	pseudogene	135.2903	135.2907	negative	MGI_C57BL6J_3651378	Gm12983	NCBI_Gene:676072,ENSEMBL:ENSMUSG00000087270	MGI:3651378	pseudogene	predicted gene 12983
4	gene	135.2966	135.2994	negative	MGI_C57BL6J_5589860	Gm30701	NCBI_Gene:102632698	MGI:5589860	lncRNA gene	predicted gene, 30701
4	gene	135.3073	135.3095	positive	MGI_C57BL6J_3651384	Gm12984	ENSEMBL:ENSMUSG00000085002	MGI:3651384	lncRNA gene	predicted gene 12984
4	pseudogene	135.3078	135.3080	negative	MGI_C57BL6J_3651381	Gm12982	ENSEMBL:ENSMUSG00000082833	MGI:3651381	pseudogene	predicted gene 12982
4	gene	135.3205	135.3533	negative	MGI_C57BL6J_1858303	Srrm1	NCBI_Gene:51796,ENSEMBL:ENSMUSG00000028809	MGI:1858303	protein coding gene	serine/arginine repetitive matrix 1
4	gene	135.3696	135.3983	negative	MGI_C57BL6J_2444888	Ncmap	NCBI_Gene:230822,ENSEMBL:ENSMUSG00000043924	MGI:2444888	protein coding gene	noncompact myelin associated protein
4	pseudogene	135.3772	135.3772	positive	MGI_C57BL6J_3651750	Gm12991	ENSEMBL:ENSMUSG00000084032	MGI:3651750	pseudogene	predicted gene 12991
4	pseudogene	135.4032	135.4037	negative	MGI_C57BL6J_3651107	Gm12990	ENSEMBL:ENSMUSG00000081136	MGI:3651107	pseudogene	predicted gene 12990
4	gene	135.4123	135.4339	negative	MGI_C57BL6J_1858220	Rcan3	NCBI_Gene:53902,ENSEMBL:ENSMUSG00000059713	MGI:1858220	protein coding gene	regulator of calcineurin 3
4	gene	135.4166	135.4166	negative	MGI_C57BL6J_3629655	Mir700	miRBase:MI0004684,NCBI_Gene:735285,ENSEMBL:ENSMUSG00000076123	MGI:3629655	miRNA gene	microRNA 700
4	gene	135.4207	135.4278	positive	MGI_C57BL6J_5589981	Gm30822	NCBI_Gene:102632859	MGI:5589981	lncRNA gene	predicted gene, 30822
4	gene	135.4301	135.4308	negative	MGI_C57BL6J_3801882	Gm15979	ENSEMBL:ENSMUSG00000087016	MGI:3801882	lncRNA gene	predicted gene 15979
4	gene	135.4454	135.4950	negative	MGI_C57BL6J_1921802	Nipal3	NCBI_Gene:74552,ENSEMBL:ENSMUSG00000028803	MGI:1921802	protein coding gene	NIPA-like domain containing 3
4	gene	135.4509	135.4512	positive	MGI_C57BL6J_5610498	Gm37270	ENSEMBL:ENSMUSG00000103955	MGI:5610498	unclassified gene	predicted gene, 37270
4	gene	135.4948	135.5378	positive	MGI_C57BL6J_1926056	Stpg1	NCBI_Gene:78806,ENSEMBL:ENSMUSG00000028801	MGI:1926056	protein coding gene	sperm tail PG rich repeat containing 1
4	gene	135.5124	135.5125	negative	MGI_C57BL6J_5455094	Gm25317	ENSEMBL:ENSMUSG00000080474	MGI:5455094	miRNA gene	predicted gene, 25317
4	gene	135.5419	135.5736	negative	MGI_C57BL6J_2655333	Grhl3	NCBI_Gene:230824,ENSEMBL:ENSMUSG00000037188	MGI:2655333	protein coding gene	grainyhead like transcription factor 3
4	gene	135.5736	135.5802	positive	MGI_C57BL6J_5590047	Gm30888	NCBI_Gene:102632942	MGI:5590047	lncRNA gene	predicted gene, 30888
4	gene	135.5837	135.5838	positive	MGI_C57BL6J_5452883	Gm23106	ENSEMBL:ENSMUSG00000088179	MGI:5452883	snRNA gene	predicted gene, 23106
4	gene	135.6267	135.6302	positive	MGI_C57BL6J_1913597	1700029M20Rik	NCBI_Gene:73937,ENSEMBL:ENSMUSG00000086788	MGI:1913597	lncRNA gene	RIKEN cDNA 1700029M20 gene
4	gene	135.6503	135.6540	negative	MGI_C57BL6J_5590100	Gm30941	NCBI_Gene:102633011	MGI:5590100	lncRNA gene	predicted gene, 30941
4	gene	135.6863	135.7082	positive	MGI_C57BL6J_2429859	Ifnlr1	NCBI_Gene:242700,ENSEMBL:ENSMUSG00000062157	MGI:2429859	protein coding gene	interferon lambda receptor 1
4	pseudogene	135.7157	135.7167	negative	MGI_C57BL6J_3652245	Gm12989	NCBI_Gene:100418217,ENSEMBL:ENSMUSG00000083678	MGI:3652245	pseudogene	predicted gene 12989
4	gene	135.7282	135.7554	positive	MGI_C57BL6J_2663588	Il22ra1	NCBI_Gene:230828,ENSEMBL:ENSMUSG00000037157	MGI:2663588	protein coding gene	interleukin 22 receptor, alpha 1
4	pseudogene	135.7556	135.7568	negative	MGI_C57BL6J_3650876	Gm12988	NCBI_Gene:665334,ENSEMBL:ENSMUSG00000082743	MGI:3650876	pseudogene	predicted gene 12988
4	gene	135.7588	135.8156	positive	MGI_C57BL6J_2685280	Myom3	NCBI_Gene:242702,ENSEMBL:ENSMUSG00000037139	MGI:2685280	protein coding gene	myomesin family, member 3
4	pseudogene	135.8537	135.8542	positive	MGI_C57BL6J_3650940	Gm13000	ENSEMBL:ENSMUSG00000081672	MGI:3650940	pseudogene	predicted gene 13000
4	gene	135.8557	135.8699	positive	MGI_C57BL6J_1333805	Srsf10	NCBI_Gene:14105,ENSEMBL:ENSMUSG00000028676	MGI:1333805	protein coding gene	serine/arginine-rich splicing factor 10
4	gene	135.8709	135.8739	negative	MGI_C57BL6J_106512	Pnrc2	NCBI_Gene:52830,ENSEMBL:ENSMUSG00000028675	MGI:106512	protein coding gene	proline-rich nuclear receptor coactivator 2
4	pseudogene	135.8913	135.8915	negative	MGI_C57BL6J_3651355	Gm13006	ENSEMBL:ENSMUSG00000083430	MGI:3651355	pseudogene	predicted gene 13006
4	gene	135.8952	135.9202	positive	MGI_C57BL6J_104650	Cnr2	NCBI_Gene:12802,ENSEMBL:ENSMUSG00000062585	MGI:104650	protein coding gene	cannabinoid receptor 2 (macrophage)
4	gene	135.9207	135.9403	positive	MGI_C57BL6J_95593	Fuca1	NCBI_Gene:71665,ENSEMBL:ENSMUSG00000028673	MGI:95593	protein coding gene	fucosidase, alpha-L- 1, tissue
4	gene	135.9464	135.9626	positive	MGI_C57BL6J_96158	Hmgcl	NCBI_Gene:15356,ENSEMBL:ENSMUSG00000028672	MGI:96158	protein coding gene	3-hydroxy-3-methylglutaryl-Coenzyme A lyase
4	gene	135.9637	135.9682	positive	MGI_C57BL6J_1921496	Gale	NCBI_Gene:74246,ENSEMBL:ENSMUSG00000028671	MGI:1921496	protein coding gene	galactose-4-epimerase, UDP
4	gene	135.9682	135.9726	negative	MGI_C57BL6J_1347000	Lypla2	NCBI_Gene:26394,ENSEMBL:ENSMUSG00000028670	MGI:1347000	protein coding gene	lysophospholipase 2
4	gene	135.9755	135.9873	negative	MGI_C57BL6J_1913443	Pithd1	NCBI_Gene:66193,ENSEMBL:ENSMUSG00000028669	MGI:1913443	protein coding gene	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1
4	pseudogene	135.9975	135.9979	positive	MGI_C57BL6J_3649722	Gm13007	NCBI_Gene:669445,ENSEMBL:ENSMUSG00000083852	MGI:3649722	pseudogene	predicted gene 13007
4	gene	136.0034	136.0218	negative	MGI_C57BL6J_1351315	Eloa	NCBI_Gene:27224,ENSEMBL:ENSMUSG00000028668	MGI:1351315	protein coding gene	elongin A
4	gene	136.0036	136.0109	positive	MGI_C57BL6J_3702670	Gm13008	ENSEMBL:ENSMUSG00000085714	MGI:3702670	lncRNA gene	predicted gene 13008
4	gene	136.0181	136.0185	negative	MGI_C57BL6J_5454139	Gm24362	ENSEMBL:ENSMUSG00000097995	MGI:5454139	lncRNA gene	predicted gene, 24362
4	gene	136.0283	136.0534	negative	MGI_C57BL6J_1914275	Rpl11	NCBI_Gene:67025,ENSEMBL:ENSMUSG00000059291	MGI:1914275	protein coding gene	ribosomal protein L11
4	pseudogene	136.0745	136.0750	negative	MGI_C57BL6J_3651086	Gm13009	ENSEMBL:ENSMUSG00000082877	MGI:3651086	pseudogene	predicted gene 13009
4	gene	136.1375	136.1376	positive	MGI_C57BL6J_5455778	Gm26001	ENSEMBL:ENSMUSG00000088614	MGI:5455778	snRNA gene	predicted gene, 26001
4	gene	136.1386	136.1434	negative	MGI_C57BL6J_5625214	Gm42329	NCBI_Gene:105247187	MGI:5625214	lncRNA gene	predicted gene, 42329
4	gene	136.1435	136.1458	positive	MGI_C57BL6J_96398	Id3	NCBI_Gene:15903,ENSEMBL:ENSMUSG00000007872	MGI:96398	protein coding gene	inhibitor of DNA binding 3
4	gene	136.1723	136.1961	positive	MGI_C57BL6J_1096341	E2f2	NCBI_Gene:242705,ENSEMBL:ENSMUSG00000018983	MGI:1096341	protein coding gene	E2F transcription factor 2
4	gene	136.2063	136.2466	positive	MGI_C57BL6J_2684986	Asap3	NCBI_Gene:230837,ENSEMBL:ENSMUSG00000036995	MGI:2684986	protein coding gene	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
4	gene	136.2145	136.2166	positive	MGI_C57BL6J_2441962	D230019A03Rik	NA	NA	unclassified gene	RIKEN cDNA D230019A03 gene
4	gene	136.2477	136.2749	positive	MGI_C57BL6J_1196908	Tcea3	NCBI_Gene:21401,ENSEMBL:ENSMUSG00000001604	MGI:1196908	protein coding gene	transcription elongation factor A (SII), 3
4	gene	136.2842	136.2939	positive	MGI_C57BL6J_99192	Zfp46	NCBI_Gene:22704,ENSEMBL:ENSMUSG00000051351	MGI:99192	protein coding gene	zinc finger protein 46
4	pseudogene	136.3074	136.3079	negative	MGI_C57BL6J_3650319	Gm13013	ENSEMBL:ENSMUSG00000081330	MGI:3650319	pseudogene	predicted gene 13013
4	gene	136.3109	136.3594	positive	MGI_C57BL6J_1891692	Hnrnpr	NCBI_Gene:74326,ENSEMBL:ENSMUSG00000066037	MGI:1891692	protein coding gene	heterogeneous nuclear ribonucleoprotein R
4	gene	136.3478	136.3494	negative	MGI_C57BL6J_5504137	Gm27022	ENSEMBL:ENSMUSG00000098155	MGI:5504137	lncRNA gene	predicted gene, 27022
4	gene	136.3503	136.3594	positive	MGI_C57BL6J_1918848	9130020K20Rik	NCBI_Gene:105247188	MGI:1918848	lncRNA gene	RIKEN cDNA 9130020K20 gene
4	gene	136.3558	136.3594	positive	MGI_C57BL6J_4937022	Gm17388	NA	NA	lncRNA gene	predicted gene%2c 17388
4	gene	136.3875	136.3890	positive	MGI_C57BL6J_5590454	Gm31295	NCBI_Gene:102633481	MGI:5590454	lncRNA gene	predicted gene, 31295
4	gene	136.4235	136.4444	positive	MGI_C57BL6J_96276	Htr1d	NCBI_Gene:15552,ENSEMBL:ENSMUSG00000070687	MGI:96276	protein coding gene	5-hydroxytryptamine (serotonin) receptor 1D
4	gene	136.4623	136.4640	positive	MGI_C57BL6J_2443447	6030445D17Rik	ENSEMBL:ENSMUSG00000066178	MGI:2443447	protein coding gene	RIKEN cDNA 6030445D17 gene
4	gene	136.4697	136.5548	positive	MGI_C57BL6J_107629	Luzp1	NCBI_Gene:269593,ENSEMBL:ENSMUSG00000001089	MGI:107629	protein coding gene	leucine zipper protein 1
4	gene	136.5505	136.6028	negative	MGI_C57BL6J_1196256	Kdm1a	NCBI_Gene:99982,ENSEMBL:ENSMUSG00000036940	MGI:1196256	protein coding gene	lysine (K)-specific demethylase 1A
4	pseudogene	136.5842	136.5847	negative	MGI_C57BL6J_3649751	Gm12987	ENSEMBL:ENSMUSG00000082711	MGI:3649751	pseudogene	predicted gene 12987
4	gene	136.6069	136.6133	positive	MGI_C57BL6J_1914913	Tex46	NCBI_Gene:67663,ENSEMBL:ENSMUSG00000036921	MGI:1914913	protein coding gene	testis expressed 46
4	pseudogene	136.6088	136.6099	negative	MGI_C57BL6J_3651584	Gm12986	NCBI_Gene:433770,ENSEMBL:ENSMUSG00000083054	MGI:3651584	pseudogene	predicted gene 12986
4	gene	136.6098	136.6099	negative	MGI_C57BL6J_5451957	Gm22180	ENSEMBL:ENSMUSG00000092747	MGI:5451957	miRNA gene	predicted gene, 22180
4	gene	136.6226	136.6398	positive	MGI_C57BL6J_2448566	Lactbl1	NCBI_Gene:242707,ENSEMBL:ENSMUSG00000070683	MGI:2448566	protein coding gene	lactamase, beta-like 1
4	gene	136.6396	136.6421	positive	MGI_C57BL6J_5610811	Gm37583	ENSEMBL:ENSMUSG00000103119	MGI:5610811	unclassified gene	predicted gene, 37583
4	gene	136.6475	136.8360	negative	MGI_C57BL6J_99611	Ephb2	NCBI_Gene:13844,ENSEMBL:ENSMUSG00000028664	MGI:99611	protein coding gene	Eph receptor B2
4	gene	136.8360	136.8421	positive	MGI_C57BL6J_5590695	Gm31536	NCBI_Gene:102633796	MGI:5590695	lncRNA gene	predicted gene, 31536
4	gene	136.8801	136.8862	negative	MGI_C57BL6J_88224	C1qb	NCBI_Gene:12260,ENSEMBL:ENSMUSG00000036905	MGI:88224	protein coding gene	complement component 1, q subcomponent, beta polypeptide
4	gene	136.8898	136.8931	negative	MGI_C57BL6J_88225	C1qc	NCBI_Gene:12262,ENSEMBL:ENSMUSG00000036896	MGI:88225	protein coding gene	complement component 1, q subcomponent, C chain
4	gene	136.8959	136.8988	negative	MGI_C57BL6J_88223	C1qa	NCBI_Gene:12259,ENSEMBL:ENSMUSG00000036887	MGI:88223	protein coding gene	complement component 1, q subcomponent, alpha polypeptide
4	gene	136.9294	136.9568	negative	MGI_C57BL6J_109378	Epha8	NCBI_Gene:13842,ENSEMBL:ENSMUSG00000028661	MGI:109378	protein coding gene	Eph receptor A8
4	gene	136.9797	137.0494	negative	MGI_C57BL6J_2682254	Zbtb40	NCBI_Gene:230848,ENSEMBL:ENSMUSG00000060862	MGI:2682254	protein coding gene	zinc finger and BTB domain containing 40
4	gene	137.0257	137.0258	positive	MGI_C57BL6J_5453611	Gm23834	ENSEMBL:ENSMUSG00000077624	MGI:5453611	snoRNA gene	predicted gene, 23834
4	gene	137.0766	137.0951	positive	MGI_C57BL6J_5590807	Gm31648	NCBI_Gene:102633949	MGI:5590807	lncRNA gene	predicted gene, 31648
4	gene	137.1167	137.1183	negative	MGI_C57BL6J_3702655	Gm13001	NCBI_Gene:102634021,ENSEMBL:ENSMUSG00000087417	MGI:3702655	lncRNA gene	predicted gene 13001
4	gene	137.1167	137.1176	negative	MGI_C57BL6J_1921513	1700037C06Rik	ENSEMBL:ENSMUSG00000085542	MGI:1921513	lncRNA gene	RIKEN cDNA 1700037C06 gene
4	gene	137.1395	137.1425	negative	MGI_C57BL6J_5590921	Gm31762	NCBI_Gene:102634099	MGI:5590921	lncRNA gene	predicted gene, 31762
4	gene	137.1591	137.1651	negative	MGI_C57BL6J_3650099	Gm13003	NCBI_Gene:100503595,ENSEMBL:ENSMUSG00000085833	MGI:3650099	lncRNA gene	predicted gene 13003
4	gene	137.1713	137.1781	negative	MGI_C57BL6J_5826509	Gm46872	NCBI_Gene:108168981	MGI:5826509	lncRNA gene	predicted gene, 46872
4	gene	137.1840	137.1841	positive	MGI_C57BL6J_5455176	Gm25399	ENSEMBL:ENSMUSG00000093294	MGI:5455176	miRNA gene	predicted gene, 25399
4	gene	137.1841	137.1841	positive	MGI_C57BL6J_5453040	Gm23263	ENSEMBL:ENSMUSG00000092848	MGI:5453040	miRNA gene	predicted gene, 23263
4	gene	137.1841	137.2528	negative	MGI_C57BL6J_5590979	Gm31820	NCBI_Gene:102634171	MGI:5590979	lncRNA gene	predicted gene, 31820
4	pseudogene	137.2190	137.2204	negative	MGI_C57BL6J_3650102	Gm13005	NCBI_Gene:100047000,ENSEMBL:ENSMUSG00000080806	MGI:3650102	pseudogene	predicted gene 13005
4	pseudogene	137.2226	137.2233	negative	MGI_C57BL6J_3650101	Gm13002	ENSEMBL:ENSMUSG00000082149	MGI:3650101	pseudogene	predicted gene 13002
4	gene	137.2775	137.2997	positive	MGI_C57BL6J_98957	Wnt4	NCBI_Gene:22417,ENSEMBL:ENSMUSG00000036856	MGI:98957	protein coding gene	wingless-type MMTV integration site family, member 4
4	gene	137.3197	137.3578	negative	MGI_C57BL6J_106211	Cdc42	NCBI_Gene:12540,ENSEMBL:ENSMUSG00000006699	MGI:106211	protein coding gene	cell division cycle 42
4	gene	137.3256	137.3256	positive	MGI_C57BL6J_5455549	Gm25772	ENSEMBL:ENSMUSG00000089199	MGI:5455549	snRNA gene	predicted gene, 25772
4	gene	137.3364	137.3401	negative	MGI_C57BL6J_2441797	A430061O12Rik	NA	NA	unclassified gene	RIKEN cDNA A430061O12 gene
4	gene	137.3873	137.3884	negative	MGI_C57BL6J_1917225	2810405F17Rik	ENSEMBL:ENSMUSG00000101493	MGI:1917225	lncRNA gene	RIKEN cDNA 2810405F17 gene
4	pseudogene	137.3953	137.3957	positive	MGI_C57BL6J_3650100	Rpl31-ps10	NCBI_Gene:665533,ENSEMBL:ENSMUSG00000070667	MGI:3650100	pseudogene	ribosomal protein L31, pseudogene 10
4	gene	137.4016	137.4098	negative	MGI_C57BL6J_3651647	Cela3a	NCBI_Gene:242711,ENSEMBL:ENSMUSG00000078520	MGI:3651647	protein coding gene	chymotrypsin-like elastase family, member 3A
4	gene	137.4210	137.4305	negative	MGI_C57BL6J_1915118	Cela3b	NCBI_Gene:67868,ENSEMBL:ENSMUSG00000023433	MGI:1915118	protein coding gene	chymotrypsin-like elastase family, member 3B
4	gene	137.4366	137.4671	negative	MGI_C57BL6J_3651180	Gm13010	NCBI_Gene:105247191,ENSEMBL:ENSMUSG00000086845	MGI:3651180	lncRNA gene	predicted gene 13010
4	gene	137.4533	137.4555	positive	MGI_C57BL6J_1916630	1700013G24Rik	NCBI_Gene:69380,ENSEMBL:ENSMUSG00000041399	MGI:1916630	protein coding gene	RIKEN cDNA 1700013G24 gene
4	gene	137.4688	137.5706	positive	MGI_C57BL6J_96257	Hspg2	NCBI_Gene:15530,ENSEMBL:ENSMUSG00000028763	MGI:96257	protein coding gene	perlecan (heparan sulfate proteoglycan 2)
4	gene	137.5383	137.5384	positive	MGI_C57BL6J_5530988	Mir7018	miRBase:MI0022867,NCBI_Gene:102465616,ENSEMBL:ENSMUSG00000099134	MGI:5530988	miRNA gene	microRNA 7018
4	gene	137.5707	137.5824	negative	MGI_C57BL6J_3588210	Ldlrad2	NCBI_Gene:435811,ENSEMBL:ENSMUSG00000094035	MGI:3588210	protein coding gene	low density lipoprotein receptor class A domain containing 2
4	gene	137.5938	137.6585	positive	MGI_C57BL6J_2158502	Usp48	NCBI_Gene:170707,ENSEMBL:ENSMUSG00000043411	MGI:2158502	protein coding gene	ubiquitin specific peptidase 48
4	gene	137.6647	137.7299	positive	MGI_C57BL6J_109338	Rap1gap	NCBI_Gene:110351,ENSEMBL:ENSMUSG00000041351	MGI:109338	protein coding gene	Rap1 GTPase-activating protein
4	gene	137.6970	137.7074	negative	MGI_C57BL6J_1917058	Rap1gapos	NCBI_Gene:69808,ENSEMBL:ENSMUSG00000087476	MGI:1917058	antisense lncRNA gene	RAP1 GTPase activating protein, opposite strand
4	gene	137.7417	137.7964	negative	MGI_C57BL6J_87983	Alpl	NCBI_Gene:11647,ENSEMBL:ENSMUSG00000028766	MGI:87983	protein coding gene	alkaline phosphatase, liver/bone/kidney
4	gene	137.8063	137.8120	negative	MGI_C57BL6J_5591238	Gm32079	NCBI_Gene:102634516	MGI:5591238	lncRNA gene	predicted gene, 32079
4	gene	137.8622	137.9652	positive	MGI_C57BL6J_1101357	Ece1	NCBI_Gene:230857,ENSEMBL:ENSMUSG00000057530	MGI:1101357	protein coding gene	endothelin converting enzyme 1
4	gene	137.8820	137.8839	negative	MGI_C57BL6J_3652270	Gm13012	NCBI_Gene:102634683,ENSEMBL:ENSMUSG00000085823	MGI:3652270	lncRNA gene	predicted gene 13012
4	gene	137.9154	137.9155	negative	MGI_C57BL6J_1921862	4833410I11Rik	NA	NA	unclassified gene	RIKEN cDNA 4833410I11 gene
4	gene	137.9918	137.9923	positive	MGI_C57BL6J_3035105	BE691133	NA	NA	unclassified gene	expressed sequence BE691133
4	gene	137.9930	138.2085	positive	MGI_C57BL6J_1923935	Eif4g3	NCBI_Gene:230861,ENSEMBL:ENSMUSG00000028760	MGI:1923935	protein coding gene	eukaryotic translation initiation factor 4 gamma, 3
4	gene	137.9942	138.0279	positive	MGI_C57BL6J_5591553	Gm32394	NCBI_Gene:102634927	MGI:5591553	lncRNA gene	predicted gene, 32394
4	gene	138.0140	138.0184	positive	MGI_C57BL6J_3611235	8030494B02Rik	NA	NA	unclassified non-coding RNA gene	Riken cDNA 8030494B02 gene
4	gene	138.1376	138.1385	negative	MGI_C57BL6J_1920813	1700095J12Rik	NCBI_Gene:73563,ENSEMBL:ENSMUSG00000084804	MGI:1920813	lncRNA gene	RIKEN cDNA 1700095J12 gene
4	gene	138.1632	138.1633	positive	MGI_C57BL6J_5531049	Mir6399	miRBase:MI0021935,NCBI_Gene:102466907,ENSEMBL:ENSMUSG00000098513	MGI:5531049	miRNA gene	microRNA 6399
4	gene	138.2157	138.2162	positive	MGI_C57BL6J_1916844	2310026L22Rik	ENSEMBL:ENSMUSG00000078519	MGI:1916844	lncRNA gene	RIKEN cDNA 2310026L22 gene
4	gene	138.2163	138.2447	positive	MGI_C57BL6J_109369	Hp1bp3	NCBI_Gene:15441,ENSEMBL:ENSMUSG00000028759	MGI:109369	protein coding gene	heterochromatin protein 1, binding protein 3
4	gene	138.2504	138.2613	positive	MGI_C57BL6J_2446215	Sh2d5	NCBI_Gene:230863,ENSEMBL:ENSMUSG00000045349	MGI:2446215	protein coding gene	SH2 domain containing 5
4	gene	138.2504	138.3020	positive	MGI_C57BL6J_1098229	Kif17	NCBI_Gene:16559,ENSEMBL:ENSMUSG00000028758	MGI:1098229	protein coding gene	kinesin family member 17
4	gene	138.3047	138.3126	positive	MGI_C57BL6J_1194508	Ddost	NCBI_Gene:13200,ENSEMBL:ENSMUSG00000028757	MGI:1194508	protein coding gene	dolichyl-di-phosphooligosaccharide-protein glycotransferase
4	gene	138.3134	138.3263	negative	MGI_C57BL6J_1916193	Pink1	NCBI_Gene:68943,ENSEMBL:ENSMUSG00000028756	MGI:1916193	protein coding gene	PTEN induced putative kinase 1
4	gene	138.3161	138.3162	negative	MGI_C57BL6J_5531329	Mir7019	miRBase:MI0022868,NCBI_Gene:102466788,ENSEMBL:ENSMUSG00000099200	MGI:5531329	miRNA gene	microRNA 7019
4	gene	138.3260	138.3261	negative	MGI_C57BL6J_5531028	Gm27646	ENSEMBL:ENSMUSG00000098364	MGI:5531028	miRNA gene	predicted gene, 27646
4	gene	138.3384	138.3683	negative	MGI_C57BL6J_1919519	Cda	NCBI_Gene:72269,ENSEMBL:ENSMUSG00000028755	MGI:1919519	protein coding gene	cytidine deaminase
4	gene	138.3941	138.3965	negative	MGI_C57BL6J_3651622	Fam43b	NCBI_Gene:625638,ENSEMBL:ENSMUSG00000078235	MGI:3651622	protein coding gene	family with sequence similarity 43, member B
4	gene	138.3952	138.3977	positive	MGI_C57BL6J_1931024	AB041806	ENSEMBL:ENSMUSG00000046109	MGI:1931024	lncRNA gene	hypothetical protein, MNCb-2457
4	pseudogene	138.4257	138.4260	positive	MGI_C57BL6J_3649580	Rpl38-ps1	NCBI_Gene:625646,ENSEMBL:ENSMUSG00000083326	MGI:3649580	pseudogene	ribosomal protein L38, pseudogene 1
4	gene	138.4347	138.4423	positive	MGI_C57BL6J_1915600	Mul1	NCBI_Gene:68350,ENSEMBL:ENSMUSG00000041241	MGI:1915600	protein coding gene	mitochondrial ubiquitin ligase activator of NFKB 1
4	gene	138.4543	138.4601	positive	MGI_C57BL6J_1913509	Camk2n1	NCBI_Gene:66259,ENSEMBL:ENSMUSG00000046447	MGI:1913509	protein coding gene	calcium/calmodulin-dependent protein kinase II inhibitor 1
4	gene	138.4976	138.5285	positive	MGI_C57BL6J_5591708	Gm32549	NCBI_Gene:102635131	MGI:5591708	lncRNA gene	predicted gene, 32549
4	gene	138.5642	138.6359	negative	MGI_C57BL6J_1922968	Vwa5b1	NCBI_Gene:75718,ENSEMBL:ENSMUSG00000028753	MGI:1922968	protein coding gene	von Willebrand factor A domain containing 5B1
4	gene	138.5876	138.5877	negative	MGI_C57BL6J_5452738	Gm22961	ENSEMBL:ENSMUSG00000088589	MGI:5452738	snRNA gene	predicted gene, 22961
4	gene	138.6390	138.6576	positive	MGI_C57BL6J_5591821	Gm32662	NCBI_Gene:102635281	MGI:5591821	lncRNA gene	predicted gene, 32662
4	gene	138.6775	138.7117	positive	MGI_C57BL6J_5591929	Gm32770	NCBI_Gene:102635431	MGI:5591929	lncRNA gene	predicted gene, 32770
4	gene	138.6778	138.6782	positive	MGI_C57BL6J_1914908	4930563F15Rik	NA	NA	unclassified gene	RIKEN cDNA 4930563F15 gene
4	gene	138.7098	138.7384	negative	MGI_C57BL6J_2443123	Ubxn10	NCBI_Gene:212190,ENSEMBL:ENSMUSG00000043621	MGI:2443123	protein coding gene	UBX domain protein 10
4	gene	138.7248	138.7461	positive	MGI_C57BL6J_106638	Pla2g2c	NCBI_Gene:18781,ENSEMBL:ENSMUSG00000028750	MGI:106638	protein coding gene	phospholipase A2, group IIC
4	gene	138.7505	138.7576	negative	MGI_C57BL6J_1349661	Pla2g2f	NCBI_Gene:26971,ENSEMBL:ENSMUSG00000028749	MGI:1349661	protein coding gene	phospholipase A2, group IIF
4	gene	138.7614	138.7697	negative	MGI_C57BL6J_5625217	Gm42332	NCBI_Gene:105247193	MGI:5625217	lncRNA gene	predicted gene, 42332
4	gene	138.7725	138.7802	negative	MGI_C57BL6J_5592030	Gm32871	NCBI_Gene:102635577	MGI:5592030	lncRNA gene	predicted gene, 32871
4	gene	138.7757	138.7821	positive	MGI_C57BL6J_1341796	Pla2g2d	NCBI_Gene:18782,ENSEMBL:ENSMUSG00000041202	MGI:1341796	protein coding gene	phospholipase A2, group IID
4	gene	138.7992	138.8635	negative	MGI_C57BL6J_101899	Pla2g5	NCBI_Gene:18784,ENSEMBL:ENSMUSG00000041193	MGI:101899	protein coding gene	phospholipase A2, group V
4	gene	138.8274	138.8275	negative	MGI_C57BL6J_5455057	Gm25280	ENSEMBL:ENSMUSG00000087894	MGI:5455057	snRNA gene	predicted gene, 25280
4	pseudogene	138.8319	138.8352	positive	MGI_C57BL6J_104642	Pla2g2a	NCBI_Gene:18780,ENSEMBL:ENSMUSG00000058908	MGI:104642	polymorphic pseudogene	phospholipase A2, group IIA (platelets, synovial fluid)
4	gene	138.8635	138.8686	positive	MGI_C57BL6J_5592089	Gm32930	NCBI_Gene:102635643	MGI:5592089	lncRNA gene	predicted gene, 32930
4	gene	138.8710	138.8740	negative	MGI_C57BL6J_3651765	Gm13030	NCBI_Gene:105734733,ENSEMBL:ENSMUSG00000078518	MGI:3651765	protein coding gene	predicted gene 13030
4	gene	138.8779	138.8828	positive	MGI_C57BL6J_1349660	Pla2g2e	NCBI_Gene:26970,ENSEMBL:ENSMUSG00000028751	MGI:1349660	protein coding gene	phospholipase A2, group IIE
4	gene	138.8911	138.9140	negative	MGI_C57BL6J_1920412	Otud3	NCBI_Gene:73162,ENSEMBL:ENSMUSG00000041161	MGI:1920412	protein coding gene	OTU domain containing 3
4	pseudogene	138.9352	138.9357	negative	MGI_C57BL6J_5010282	Gm18097	NCBI_Gene:100416403	MGI:5010282	pseudogene	predicted gene, 18097
4	gene	138.9364	138.9386	negative	MGI_C57BL6J_5592170	Gm33011	NCBI_Gene:102635752	MGI:5592170	lncRNA gene	predicted gene, 33011
4	gene	138.9619	138.9647	negative	MGI_C57BL6J_5625218	Gm42333	NCBI_Gene:105247194	MGI:5625218	lncRNA gene	predicted gene, 42333
4	gene	138.9671	138.9684	positive	MGI_C57BL6J_1914075	Rnf186	NCBI_Gene:66825,ENSEMBL:ENSMUSG00000070661	MGI:1914075	protein coding gene	ring finger protein 186
4	gene	138.9721	139.0592	positive	MGI_C57BL6J_1924306	Tmco4	NCBI_Gene:77056,ENSEMBL:ENSMUSG00000041143	MGI:1924306	protein coding gene	transmembrane and coiled-coil domains 4
4	gene	139.0032	139.0196	negative	MGI_C57BL6J_5592373	Gm33214	NCBI_Gene:102636025	MGI:5592373	lncRNA gene	predicted gene, 33214
4	gene	139.0597	139.0756	negative	MGI_C57BL6J_1196627	Htr6	NCBI_Gene:15565,ENSEMBL:ENSMUSG00000028747	MGI:1196627	protein coding gene	5-hydroxytryptamine (serotonin) receptor 6
4	gene	139.0749	139.0772	positive	MGI_C57BL6J_5791369	Gm45533	NCBI_Gene:108168960,ENSEMBL:ENSMUSG00000110296	MGI:5791369	lncRNA gene	predicted gene 45533
4	gene	139.0823	139.0930	negative	MGI_C57BL6J_104591	Nbl1	NCBI_Gene:17965,ENSEMBL:ENSMUSG00000041120	MGI:104591	protein coding gene	NBL1, DAN family BMP antagonist
4	gene	139.1018	139.1311	negative	MGI_C57BL6J_1913628	Micos10	NCBI_Gene:433771,ENSEMBL:ENSMUSG00000050608	MGI:1913628	protein coding gene	mitochondrial contact site and cristae organizing system subunit 10
4	gene	139.1341	139.1653	negative	MGI_C57BL6J_5592463	Gm33304	NCBI_Gene:102636159	MGI:5592463	lncRNA gene	predicted gene, 33304
4	pseudogene	139.1502	139.1508	positive	MGI_C57BL6J_1935164	Hspe1-ps4	NCBI_Gene:93751,ENSEMBL:ENSMUSG00000083238	MGI:1935164	pseudogene	heat shock protein 1 (chaperonin 10), pseudogene 4
4	gene	139.1754	139.1807	negative	MGI_C57BL6J_3650322	Gm16287	NCBI_Gene:100038595,ENSEMBL:ENSMUSG00000073739	MGI:3650322	lncRNA gene	predicted gene 16287
4	gene	139.1922	139.1927	negative	MGI_C57BL6J_1925704	9530077C14Rik	NA	NA	unclassified gene	RIKEN cDNA 9530077C14 gene
4	gene	139.1929	139.2918	positive	MGI_C57BL6J_104652	Capzb	NCBI_Gene:12345,ENSEMBL:ENSMUSG00000028745	MGI:104652	protein coding gene	capping protein (actin filament) muscle Z-line, beta
4	gene	139.2940	139.3107	negative	MGI_C57BL6J_2384837	Pqlc2	NCBI_Gene:212555,ENSEMBL:ENSMUSG00000028744	MGI:2384837	protein coding gene	PQ loop repeat containing 2
4	gene	139.3107	139.3188	positive	MGI_C57BL6J_107796	Akr7a5	NCBI_Gene:110198,ENSEMBL:ENSMUSG00000028743	MGI:107796	protein coding gene	aldo-keto reductase family 7, member A5 (aflatoxin aldehyde reductase)
4	gene	139.3382	139.3383	positive	MGI_C57BL6J_5455509	Gm25732	ENSEMBL:ENSMUSG00000092909	MGI:5455509	miRNA gene	predicted gene, 25732
4	gene	139.3383	139.3384	positive	MGI_C57BL6J_5454022	Gm24245	ENSEMBL:ENSMUSG00000087943	MGI:5454022	miRNA gene	predicted gene, 24245
4	pseudogene	139.3422	139.3433	positive	MGI_C57BL6J_3652310	Gm13019	ENSEMBL:ENSMUSG00000083404	MGI:3652310	pseudogene	predicted gene 13019
4	pseudogene	139.3444	139.3463	negative	MGI_C57BL6J_1100505	Ccnd3-ps	NCBI_Gene:626000,ENSEMBL:ENSMUSG00000080708	MGI:1100505	pseudogene	cyclin D3, pseudogene
4	gene	139.3474	139.3526	negative	MGI_C57BL6J_1917152	Mrto4	NCBI_Gene:69902,ENSEMBL:ENSMUSG00000028741	MGI:1917152	protein coding gene	mRNA turnover 4, ribosome maturation factor
4	gene	139.3526	139.3787	positive	MGI_C57BL6J_2443696	Emc1	NCBI_Gene:230866,ENSEMBL:ENSMUSG00000078517	MGI:2443696	protein coding gene	ER membrane protein complex subunit 1
4	gene	139.3526	139.4896	positive	MGI_C57BL6J_1916366	Ubr4	NCBI_Gene:69116,ENSEMBL:ENSMUSG00000066036	MGI:1916366	protein coding gene	ubiquitin protein ligase E3 component n-recognin 4
4	gene	139.3765	139.3804	negative	MGI_C57BL6J_1919807	2700016F22Rik	ENSEMBL:ENSMUSG00000097731	MGI:1919807	lncRNA gene	RIKEN cDNA 2700016F22 gene
4	gene	139.4305	139.4306	negative	MGI_C57BL6J_4414084	n-TVaac1	NCBI_Gene:102467443	MGI:4414084	tRNA gene	nuclear encoded tRNA valine 1 (anticodon AAC)
4	gene	139.5305	139.6204	positive	MGI_C57BL6J_2140675	Iffo2	NCBI_Gene:212632,ENSEMBL:ENSMUSG00000041025	MGI:2140675	protein coding gene	intermediate filament family orphan 2
4	gene	139.5889	139.5890	negative	MGI_C57BL6J_5455348	Gm25571	ENSEMBL:ENSMUSG00000094359	MGI:5455348	miRNA gene	predicted gene, 25571
4	gene	139.6032	139.6627	positive	MGI_C57BL6J_5439438	Gm21969	ENSEMBL:ENSMUSG00000094439	MGI:5439438	protein coding gene	predicted gene 21969
4	gene	139.6229	139.6497	positive	MGI_C57BL6J_2443883	Aldh4a1	NCBI_Gene:212647,ENSEMBL:ENSMUSG00000028737	MGI:2443883	protein coding gene	aldehyde dehydrogenase 4 family, member A1
4	gene	139.6440	139.6441	positive	MGI_C57BL6J_5531141	Mir7020	miRBase:MI0022869,NCBI_Gene:102465617,ENSEMBL:ENSMUSG00000098569	MGI:5531141	miRNA gene	microRNA 7020
4	gene	139.6535	139.6703	positive	MGI_C57BL6J_1933546	Tas1r2	NCBI_Gene:83770,ENSEMBL:ENSMUSG00000028738	MGI:1933546	protein coding gene	taste receptor, type 1, member 2
4	gene	139.7350	139.7357	positive	MGI_C57BL6J_5625219	Gm42334	NCBI_Gene:105247195	MGI:5625219	lncRNA gene	predicted gene, 42334
4	gene	139.7371	139.8335	negative	MGI_C57BL6J_97491	Pax7	NCBI_Gene:18509,ENSEMBL:ENSMUSG00000028736	MGI:97491	protein coding gene	paired box 7
4	gene	139.8331	139.8529	positive	MGI_C57BL6J_5826510	Gm46873	NCBI_Gene:108168982	MGI:5826510	lncRNA gene	predicted gene, 46873
4	gene	139.9105	139.9344	positive	MGI_C57BL6J_2686513	Gm1667	NCBI_Gene:102636380,ENSEMBL:ENSMUSG00000087646	MGI:2686513	lncRNA gene	predicted gene 1667
4	gene	139.9233	139.9332	positive	MGI_C57BL6J_3651504	Gm13028	ENSEMBL:ENSMUSG00000087628	MGI:3651504	lncRNA gene	predicted gene 13028
4	gene	139.9261	139.9435	negative	MGI_C57BL6J_1918485	4933427I22Rik	NCBI_Gene:71235,ENSEMBL:ENSMUSG00000085928	MGI:1918485	lncRNA gene	RIKEN cDNA 4933427I22 gene
4	gene	139.9602	139.9680	negative	MGI_C57BL6J_2444612	Klhdc7a	NCBI_Gene:242721,ENSEMBL:ENSMUSG00000078234	MGI:2444612	protein coding gene	kelch domain containing 7A
4	gene	139.9675	139.9676	negative	MGI_C57BL6J_4358926	Mir2139	miRBase:MI0010752,NCBI_Gene:100316727,ENSEMBL:ENSMUSG00000089294	MGI:4358926	miRNA gene	microRNA 2139
4	gene	140.0268	140.2469	negative	MGI_C57BL6J_2681842	Igsf21	NCBI_Gene:230868,ENSEMBL:ENSMUSG00000040972	MGI:2681842	protein coding gene	immunoglobulin superfamily, member 21
4	gene	140.1086	140.1450	positive	MGI_C57BL6J_3651764	Gm13029	NCBI_Gene:102636673,ENSEMBL:ENSMUSG00000086164	MGI:3651764	lncRNA gene	predicted gene 13029
4	gene	140.1319	140.1334	positive	MGI_C57BL6J_3651912	Gm13027	ENSEMBL:ENSMUSG00000085968	MGI:3651912	lncRNA gene	predicted gene 13027
4	gene	140.2185	140.2225	positive	MGI_C57BL6J_5592701	Gm33542	NCBI_Gene:102636490	MGI:5592701	lncRNA gene	predicted gene, 33542
4	gene	140.3207	140.3233	negative	MGI_C57BL6J_3642724	Gm9867	ENSEMBL:ENSMUSG00000103107	MGI:3642724	lncRNA gene	predicted gene 9867
4	gene	140.3234	140.3305	positive	MGI_C57BL6J_5593054	Gm33895	NCBI_Gene:102636971	MGI:5593054	lncRNA gene	predicted gene, 33895
4	gene	140.3554	140.3619	positive	MGI_C57BL6J_5593233	Gm34074	NCBI_Gene:102637201	MGI:5593233	lncRNA gene	predicted gene, 34074
4	gene	140.3805	140.3864	positive	MGI_C57BL6J_3650527	Gm13016	NCBI_Gene:329970,ENSEMBL:ENSMUSG00000087084	MGI:3650527	lncRNA gene	predicted gene 13016
4	gene	140.3904	140.3969	positive	MGI_C57BL6J_3650528	Gm13017	NCBI_Gene:102637278,ENSEMBL:ENSMUSG00000086960	MGI:3650528	lncRNA gene	predicted gene 13017
4	gene	140.4225	140.4319	positive	MGI_C57BL6J_3649637	Gm13021	NCBI_Gene:102637389,ENSEMBL:ENSMUSG00000086437	MGI:3649637	lncRNA gene	predicted gene 13021
4	gene	140.4380	140.4613	positive	MGI_C57BL6J_3650881	Gm13026	ENSEMBL:ENSMUSG00000085047	MGI:3650881	lncRNA gene	predicted gene 13026
4	pseudogene	140.4458	140.4462	negative	MGI_C57BL6J_6324716	Gm50453	ENSEMBL:ENSMUSG00000118416	MGI:6324716	pseudogene	predicted gene, 50453
4	gene	140.5145	140.6660	negative	MGI_C57BL6J_1920004	Arhgef10l	NCBI_Gene:72754,ENSEMBL:ENSMUSG00000040964	MGI:1920004	protein coding gene	Rho guanine nucleotide exchange factor (GEF) 10-like
4	gene	140.6051	140.6066	positive	MGI_C57BL6J_5625220	Gm42335	NCBI_Gene:105247196	MGI:5625220	lncRNA gene	predicted gene, 42335
4	gene	140.6797	140.6863	positive	MGI_C57BL6J_3650883	Gm13025	NCBI_Gene:102637546,ENSEMBL:ENSMUSG00000086159	MGI:3650883	lncRNA gene	predicted gene 13025
4	gene	140.6927	140.6928	positive	MGI_C57BL6J_5452822	Gm23045	ENSEMBL:ENSMUSG00000095878	MGI:5452822	miRNA gene	predicted gene, 23045
4	gene	140.7005	140.7232	positive	MGI_C57BL6J_1919784	Rcc2	NCBI_Gene:108911,ENSEMBL:ENSMUSG00000040945	MGI:1919784	protein coding gene	regulator of chromosome condensation 2
4	gene	140.7170	140.7171	positive	MGI_C57BL6J_5455728	Gm25951	ENSEMBL:ENSMUSG00000093071	MGI:5455728	miRNA gene	predicted gene, 25951
4	gene	140.7274	140.7426	negative	MGI_C57BL6J_2655198	Padi6	NCBI_Gene:242726,ENSEMBL:ENSMUSG00000040935	MGI:2655198	protein coding gene	peptidyl arginine deiminase, type VI
4	gene	140.7455	140.7742	negative	MGI_C57BL6J_1338898	Padi4	NCBI_Gene:18602,ENSEMBL:ENSMUSG00000025330	MGI:1338898	protein coding gene	peptidyl arginine deiminase, type IV
4	gene	140.7854	140.8106	negative	MGI_C57BL6J_1338891	Padi3	NCBI_Gene:18601,ENSEMBL:ENSMUSG00000025328	MGI:1338891	protein coding gene	peptidyl arginine deiminase, type III
4	gene	140.8110	140.8175	positive	MGI_C57BL6J_3702685	Gm13032	NCBI_Gene:100049161,ENSEMBL:ENSMUSG00000085918	MGI:3702685	lncRNA gene	predicted gene 13032
4	gene	140.8130	140.8458	negative	MGI_C57BL6J_1338893	Padi1	NCBI_Gene:18599,ENSEMBL:ENSMUSG00000025329	MGI:1338893	protein coding gene	peptidyl arginine deiminase, type I
4	gene	140.8727	140.8781	positive	MGI_C57BL6J_1922378	4930515B02Rik	NCBI_Gene:75128,ENSEMBL:ENSMUSG00000087045	MGI:1922378	lncRNA gene	RIKEN cDNA 4930515B02 gene
4	gene	140.9063	140.9526	positive	MGI_C57BL6J_1338892	Padi2	NCBI_Gene:18600,ENSEMBL:ENSMUSG00000028927	MGI:1338892	protein coding gene	peptidyl arginine deiminase, type II
4	gene	140.9090	140.9103	negative	MGI_C57BL6J_5826356	Gm46719	NCBI_Gene:108168688	MGI:5826356	lncRNA gene	predicted gene, 46719
4	gene	140.9187	140.9188	positive	MGI_C57BL6J_5456003	Gm26226	ENSEMBL:ENSMUSG00000064443	MGI:5456003	snRNA gene	predicted gene, 26226
4	gene	140.9272	140.9321	negative	MGI_C57BL6J_5593534	Gm34375	NCBI_Gene:102637611	MGI:5593534	lncRNA gene	predicted gene, 34375
4	gene	140.9477	140.9579	negative	MGI_C57BL6J_3702680	Gm13031	NCBI_Gene:100126227,ENSEMBL:ENSMUSG00000087698	MGI:3702680	lncRNA gene	predicted gene 13031
4	gene	140.9604	140.9613	negative	MGI_C57BL6J_5593590	Gm34431	NCBI_Gene:102637683	MGI:5593590	lncRNA gene	predicted gene, 34431
4	gene	140.9612	140.9792	positive	MGI_C57BL6J_1914930	Sdhb	NCBI_Gene:67680,ENSEMBL:ENSMUSG00000009863	MGI:1914930	protein coding gene	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)
4	gene	140.9869	141.0077	positive	MGI_C57BL6J_1922022	Atp13a2	NCBI_Gene:74772,ENSEMBL:ENSMUSG00000036622	MGI:1922022	protein coding gene	ATPase type 13A2
4	gene	141.0104	141.0160	positive	MGI_C57BL6J_99559	Mfap2	NCBI_Gene:17150,ENSEMBL:ENSMUSG00000060572	MGI:99559	protein coding gene	microfibrillar-associated protein 2
4	gene	141.0166	141.0606	negative	MGI_C57BL6J_3529431	Crocc	NCBI_Gene:230872,ENSEMBL:ENSMUSG00000040860	MGI:3529431	protein coding gene	ciliary rootlet coiled-coil, rootletin
4	gene	141.0665	141.0784	negative	MGI_C57BL6J_1913397	Necap2	NCBI_Gene:66147,ENSEMBL:ENSMUSG00000028923	MGI:1913397	protein coding gene	NECAP endocytosis associated 2
4	pseudogene	141.0848	141.0857	positive	MGI_C57BL6J_3651114	Gm13047	NCBI_Gene:638991,ENSEMBL:ENSMUSG00000082246	MGI:3651114	pseudogene	predicted gene 13047
4	gene	141.0883	141.1128	positive	MGI_C57BL6J_3607787	Spata21	NCBI_Gene:329972,ENSEMBL:ENSMUSG00000045004	MGI:3607787	protein coding gene	spermatogenesis associated 21
4	gene	141.1130	141.1398	negative	MGI_C57BL6J_1098672	Szrd1	NCBI_Gene:213491,ENSEMBL:ENSMUSG00000040842	MGI:1098672	protein coding gene	SUZ RNA binding domain containing 1
4	gene	141.1157	141.1181	positive	MGI_C57BL6J_3704238	4921514A10Rik	ENSEMBL:ENSMUSG00000097620	MGI:3704238	lncRNA gene	RIKEN cDNA 4921514A10 gene
4	gene	141.1479	141.2041	positive	MGI_C57BL6J_1924992	Fbxo42	NCBI_Gene:213499,ENSEMBL:ENSMUSG00000028920	MGI:1924992	protein coding gene	F-box protein 42
4	gene	141.2137	141.2268	positive	MGI_C57BL6J_1923416	Cplane2	NCBI_Gene:76166,ENSEMBL:ENSMUSG00000073733	MGI:1923416	protein coding gene	ciliogenesis and planar polarity effector 2
4	gene	141.2382	141.2395	negative	MGI_C57BL6J_3641643	C630004L07Rik	ENSEMBL:ENSMUSG00000103366	MGI:3641643	unclassified gene	RIKEN cDNA C630004L07 gene
4	gene	141.2395	141.2579	positive	MGI_C57BL6J_1925912	Arhgef19	NCBI_Gene:213649,ENSEMBL:ENSMUSG00000028919	MGI:1925912	protein coding gene	Rho guanine nucleotide exchange factor (GEF) 19
4	gene	141.2618	141.2660	negative	MGI_C57BL6J_3649999	Gm13055	ENSEMBL:ENSMUSG00000085774	MGI:3649999	lncRNA gene	predicted gene 13055
4	gene	141.2784	141.2798	positive	MGI_C57BL6J_3650725	Gm13056	NCBI_Gene:100503810,ENSEMBL:ENSMUSG00000085395	MGI:3650725	lncRNA gene	predicted gene 13056
4	gene	141.3012	141.3294	positive	MGI_C57BL6J_95278	Epha2	NCBI_Gene:13836,ENSEMBL:ENSMUSG00000006445	MGI:95278	protein coding gene	Eph receptor A2
4	gene	141.3462	141.3462	positive	MGI_C57BL6J_5455467	Gm25690	ENSEMBL:ENSMUSG00000093180	MGI:5455467	miRNA gene	predicted gene, 25690
4	gene	141.3478	141.3509	positive	MGI_C57BL6J_3651959	Gm13074	ENSEMBL:ENSMUSG00000085836	MGI:3651959	lncRNA gene	predicted gene 13074
4	pseudogene	141.3569	141.3571	negative	MGI_C57BL6J_3651957	Gm13076	NCBI_Gene:102637915,ENSEMBL:ENSMUSG00000084238	MGI:3651957	pseudogene	predicted gene 13076
4	gene	141.3682	141.3842	positive	MGI_C57BL6J_2685539	Fam131c	NCBI_Gene:277743,ENSEMBL:ENSMUSG00000006218	MGI:2685539	protein coding gene	family with sequence similarity 131, member C
4	gene	141.3846	141.3987	negative	MGI_C57BL6J_1329026	Clcnka	NCBI_Gene:12733,ENSEMBL:ENSMUSG00000033770	MGI:1329026	protein coding gene	chloride channel, voltage-sensitive Ka
4	gene	141.3988	141.4112	positive	MGI_C57BL6J_3651958	Gm13075	ENSEMBL:ENSMUSG00000086061	MGI:3651958	lncRNA gene	predicted gene 13075
4	gene	141.3998	141.4006	negative	MGI_C57BL6J_5593852	Gm34693	NCBI_Gene:102638025	MGI:5593852	lncRNA gene	predicted gene, 34693
4	gene	141.4044	141.4160	negative	MGI_C57BL6J_1930643	Clcnkb	NCBI_Gene:56365,ENSEMBL:ENSMUSG00000006216	MGI:1930643	protein coding gene	chloride channel, voltage-sensitive Kb
4	gene	141.4208	141.4253	positive	MGI_C57BL6J_1352494	Hspb7	NCBI_Gene:29818,ENSEMBL:ENSMUSG00000006221	MGI:1352494	protein coding gene	heat shock protein family, member 7 (cardiovascular)
4	gene	141.4327	141.4361	negative	MGI_C57BL6J_2685540	Srarp	NCBI_Gene:277744,ENSEMBL:ENSMUSG00000070637	MGI:2685540	protein coding gene	steroid receptor associated and regulated protein
4	gene	141.4440	141.4447	negative	MGI_C57BL6J_5625222	Gm42337	NCBI_Gene:105247198	MGI:5625222	lncRNA gene	predicted gene, 42337
4	gene	141.4447	141.4679	positive	MGI_C57BL6J_107410	Zbtb17	NCBI_Gene:22642,ENSEMBL:ENSMUSG00000006215	MGI:107410	protein coding gene	zinc finger and BTB domain containing 17
4	gene	141.4679	141.5386	negative	MGI_C57BL6J_1891706	Spen	NCBI_Gene:56381,ENSEMBL:ENSMUSG00000040761	MGI:1891706	protein coding gene	spen family transcription repressor
4	gene	141.5355	141.5374	positive	MGI_C57BL6J_3782299	Gm4123	NCBI_Gene:100042951	MGI:3782299	unclassified gene	predicted gene 4123
4	gene	141.5392	141.5436	positive	MGI_C57BL6J_2443748	B830004H01Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA B830004H01 gene
4	gene	141.5462	141.5483	positive	MGI_C57BL6J_2444063	B330016D10Rik	NCBI_Gene:320456,ENSEMBL:ENSMUSG00000048406	MGI:2444063	lncRNA gene	RIKEN cDNA B330016D10 gene
4	gene	141.5761	141.6061	negative	MGI_C57BL6J_1921452	Fblim1	NCBI_Gene:74202,ENSEMBL:ENSMUSG00000006219	MGI:1921452	protein coding gene	filamin binding LIM protein 1
4	gene	141.6134	141.6186	negative	MGI_C57BL6J_2384869	Tmem82	NCBI_Gene:213989,ENSEMBL:ENSMUSG00000043085	MGI:2384869	protein coding gene	transmembrane protein 82
4	gene	141.6140	141.6156	positive	MGI_C57BL6J_2140323	AI507597	NCBI_Gene:100165,ENSEMBL:ENSMUSG00000073731	MGI:2140323	lncRNA gene	expressed sequence AI507597
4	gene	141.6188	141.6240	negative	MGI_C57BL6J_2686215	Slc25a34	NCBI_Gene:384071,ENSEMBL:ENSMUSG00000040740	MGI:2686215	protein coding gene	solute carrier family 25, member 34
4	gene	141.6257	141.6649	negative	MGI_C57BL6J_1916832	Plekhm2	NCBI_Gene:69582,ENSEMBL:ENSMUSG00000028917	MGI:1916832	protein coding gene	pleckstrin homology domain containing, family M (with RUN domain) member 2
4	gene	141.6521	141.6549	positive	MGI_C57BL6J_1921207	4930451G21Rik	NA	NA	unclassified gene	RIKEN cDNA 4930451G21 gene
4	gene	141.6775	141.7234	negative	MGI_C57BL6J_1917244	Ddi2	NCBI_Gene:68817,ENSEMBL:ENSMUSG00000078515	MGI:1917244	protein coding gene	DNA-damage inducible protein 2
4	gene	141.6836	141.6857	negative	MGI_C57BL6J_3526447	Rsc1a1	NCBI_Gene:69994,ENSEMBL:ENSMUSG00000040715	MGI:3526447	protein coding gene	regulatory solute carrier protein, family 1, member 1
4	gene	141.7295	141.7438	positive	MGI_C57BL6J_5594022	Gm34863	NCBI_Gene:102638257	MGI:5594022	lncRNA gene	predicted gene, 34863
4	gene	141.7467	141.7593	positive	MGI_C57BL6J_1923236	Agmat	NCBI_Gene:75986,ENSEMBL:ENSMUSG00000040706	MGI:1923236	protein coding gene	agmatine ureohydrolase (agmatinase)
4	gene	141.7602	141.7909	negative	MGI_C57BL6J_2442146	Dnajc16	NCBI_Gene:214063,ENSEMBL:ENSMUSG00000040697	MGI:2442146	protein coding gene	DnaJ heat shock protein family (Hsp40) member C16
4	gene	141.7936	141.8160	positive	MGI_C57BL6J_1277950	Casp9	NCBI_Gene:12371,ENSEMBL:ENSMUSG00000028914	MGI:1277950	protein coding gene	caspase 9
4	gene	141.8150	141.8262	negative	MGI_C57BL6J_95316	Cela2a	NCBI_Gene:13706,ENSEMBL:ENSMUSG00000058579	MGI:95316	protein coding gene	chymotrypsin-like elastase family, member 2A
4	gene	141.8150	141.8464	negative	MGI_C57BL6J_1923951	Ctrc	NCBI_Gene:76701,ENSEMBL:ENSMUSG00000062478	MGI:1923951	protein coding gene	chymotrypsin C (caldecrin)
4	gene	141.8443	141.8470	positive	MGI_C57BL6J_1916389	Ctrcos	NCBI_Gene:69139,ENSEMBL:ENSMUSG00000086818	MGI:1916389	antisense lncRNA gene	chymotrypsin C (caldecrin), opposite strand
4	gene	141.8483	141.8585	positive	MGI_C57BL6J_5594193	Gm35034	NCBI_Gene:108168984	MGI:5594193	lncRNA gene	predicted gene, 35034
4	gene	141.8581	141.8749	negative	MGI_C57BL6J_106504	Efhd2	NCBI_Gene:27984,ENSEMBL:ENSMUSG00000040659	MGI:106504	protein coding gene	EF hand domain containing 2
4	gene	141.8757	141.8770	positive	MGI_C57BL6J_5580073	Gm29367	ENSEMBL:ENSMUSG00000100396	MGI:5580073	lncRNA gene	predicted gene 29367
4	gene	141.8797	141.8856	negative	MGI_C57BL6J_5826511	Gm46874	NCBI_Gene:108168983	MGI:5826511	lncRNA gene	predicted gene, 46874
4	gene	141.8813	141.9003	positive	MGI_C57BL6J_3651870	Fhad1os2	NCBI_Gene:102638933,ENSEMBL:ENSMUSG00000085922	MGI:3651870	antisense lncRNA gene	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 2
4	gene	141.8904	142.0151	negative	MGI_C57BL6J_1920323	Fhad1	NCBI_Gene:329977,ENSEMBL:ENSMUSG00000051435	MGI:1920323	protein coding gene	forkhead-associated (FHA) phosphopeptide binding domain 1
4	gene	141.9099	141.9159	positive	MGI_C57BL6J_5625223	Gm42338	NCBI_Gene:105247199	MGI:5625223	lncRNA gene	predicted gene, 42338
4	gene	141.9209	141.9328	positive	MGI_C57BL6J_5594454	Gm35295	NCBI_Gene:102638820	MGI:5594454	lncRNA gene	predicted gene, 35295
4	pseudogene	141.9768	141.9773	positive	MGI_C57BL6J_3650255	Gm13059	ENSEMBL:ENSMUSG00000081079	MGI:3650255	pseudogene	predicted gene 13059
4	gene	141.9830	141.9868	positive	MGI_C57BL6J_3649995	Fhad1os1	NCBI_Gene:545691,ENSEMBL:ENSMUSG00000085424	MGI:3649995	antisense lncRNA gene	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1
4	gene	142.0179	142.0290	positive	MGI_C57BL6J_1926167	4930455G09Rik	NCBI_Gene:78917,ENSEMBL:ENSMUSG00000085761	MGI:1926167	lncRNA gene	RIKEN cDNA 4930455G09 gene
4	gene	142.0310	142.0846	negative	MGI_C57BL6J_2384874	Tmem51	NCBI_Gene:214359,ENSEMBL:ENSMUSG00000040616	MGI:2384874	protein coding gene	transmembrane protein 51
4	gene	142.0429	142.0486	negative	MGI_C57BL6J_3651989	Gm13053	ENSEMBL:ENSMUSG00000085574	MGI:3651989	lncRNA gene	predicted gene 13053
4	gene	142.0840	142.0881	positive	MGI_C57BL6J_3642733	Tmem51os1	NCBI_Gene:100038693,ENSEMBL:ENSMUSG00000073728	MGI:3642733	antisense lncRNA gene	Tmem51 opposite strand 1
4	gene	142.1024	142.2394	negative	MGI_C57BL6J_1918779	Kazn	NCBI_Gene:71529,ENSEMBL:ENSMUSG00000040606	MGI:1918779	protein coding gene	kazrin, periplakin interacting protein
4	gene	142.1267	142.1282	positive	MGI_C57BL6J_5594740	Gm35581	NCBI_Gene:102639222	MGI:5594740	lncRNA gene	predicted gene, 35581
4	gene	142.1806	142.1841	positive	MGI_C57BL6J_3649476	Gm13062	ENSEMBL:ENSMUSG00000087525	MGI:3649476	lncRNA gene	predicted gene 13062
4	gene	142.2394	142.2426	positive	MGI_C57BL6J_5594690	Gm35531	NCBI_Gene:102639151	MGI:5594690	lncRNA gene	predicted gene, 35531
4	gene	142.2557	142.2561	negative	MGI_C57BL6J_1920742	1700085G17Rik	NA	NA	unclassified gene	RIKEN cDNA 1700085G17 gene
4	gene	142.3078	142.3465	negative	MGI_C57BL6J_3651990	Gm13052	ENSEMBL:ENSMUSG00000085816	MGI:3651990	lncRNA gene	predicted gene 13052
4	gene	142.3487	142.3610	positive	MGI_C57BL6J_5826512	Gm46875	NCBI_Gene:108168985	MGI:5826512	lncRNA gene	predicted gene, 46875
4	gene	142.4071	142.4143	negative	MGI_C57BL6J_5625224	Gm42339	NCBI_Gene:105247200	MGI:5625224	lncRNA gene	predicted gene, 42339
4	gene	142.4217	142.4230	negative	MGI_C57BL6J_3665284	C030029H13Rik	NA	NA	unclassified gene	Riken cDNA C030029H13 gene
4	gene	142.4956	142.4996	positive	MGI_C57BL6J_5594911	Gm35752	NCBI_Gene:102639438	MGI:5594911	lncRNA gene	predicted gene, 35752
4	gene	142.5984	143.0748	negative	MGI_C57BL6J_1917975	6330411D24Rik	ENSEMBL:ENSMUSG00000110067	MGI:1917975	lncRNA gene	RIKEN cDNA 6330411D24 gene
4	gene	142.6317	142.6354	positive	MGI_C57BL6J_5625227	Gm42342	NCBI_Gene:105247203	MGI:5625227	lncRNA gene	predicted gene, 42342
4	gene	142.6418	142.6631	positive	MGI_C57BL6J_5625225	Gm42340	NCBI_Gene:105247201	MGI:5625225	lncRNA gene	predicted gene, 42340
4	gene	142.6434	142.6476	negative	MGI_C57BL6J_5625226	Gm42341	NCBI_Gene:105247202	MGI:5625226	lncRNA gene	predicted gene, 42341
4	gene	142.7908	142.7910	positive	MGI_C57BL6J_5610852	Gm37624	ENSEMBL:ENSMUSG00000103678	MGI:5610852	unclassified gene	predicted gene, 37624
4	gene	143.1027	143.1063	negative	MGI_C57BL6J_1926077	5830426C09Rik	NA	NA	unclassified gene	RIKEN cDNA 5830426C09 gene
4	gene	143.1074	143.2130	negative	MGI_C57BL6J_107628	Prdm2	NCBI_Gene:110593,ENSEMBL:ENSMUSG00000057637	MGI:107628	protein coding gene	PR domain containing 2, with ZNF domain
4	gene	143.1361	143.1362	negative	MGI_C57BL6J_5562764	Mir7021	miRBase:MI0022870,NCBI_Gene:102465618,ENSEMBL:ENSMUSG00000106597	MGI:5562764	miRNA gene	microRNA 7021
4	pseudogene	143.1526	143.1530	positive	MGI_C57BL6J_3650684	Gm13038	ENSEMBL:ENSMUSG00000081838	MGI:3650684	pseudogene	predicted gene 13038
4	pseudogene	143.1666	143.1674	positive	MGI_C57BL6J_3649997	Gm13039	NCBI_Gene:100384872,ENSEMBL:ENSMUSG00000083826	MGI:3649997	pseudogene	predicted gene 13039
4	gene	143.2041	143.2042	positive	MGI_C57BL6J_5451816	Gm22039	ENSEMBL:ENSMUSG00000087903	MGI:5451816	snoRNA gene	predicted gene, 22039
4	gene	143.2120	143.2150	positive	MGI_C57BL6J_3646960	Gm6687	NA	NA	protein coding gene	predicted gene 6687
4	pseudogene	143.2420	143.2434	negative	MGI_C57BL6J_3650664	Eef2-ps2	NCBI_Gene:433776,ENSEMBL:ENSMUSG00000082575	MGI:3650664	pseudogene	eukaryotic translation elongation factor 2, pseudogene 2
4	gene	143.2674	143.2996	negative	MGI_C57BL6J_103098	Pdpn	NCBI_Gene:14726,ENSEMBL:ENSMUSG00000028583	MGI:103098	protein coding gene	podoplanin
4	gene	143.3404	143.3407	positive	MGI_C57BL6J_5456090	Gm26313	ENSEMBL:ENSMUSG00000088395	MGI:5456090	unclassified non-coding RNA gene	predicted gene, 26313
4	gene	143.3465	143.3710	positive	MGI_C57BL6J_2442845	Lrrc38	NCBI_Gene:242735,ENSEMBL:ENSMUSG00000028584	MGI:2442845	protein coding gene	leucine rich repeat containing 38
4	pseudogene	143.3895	143.3905	positive	MGI_C57BL6J_3651262	Anp32b-ps1	NCBI_Gene:621961,ENSEMBL:ENSMUSG00000081792	MGI:3651262	pseudogene	Bacidic (leucine-rich) nuclear phosphoprotein 32 family, member B, pseudogene 1
4	gene	143.3944	143.4002	positive	MGI_C57BL6J_1890541	Pramel1	NCBI_Gene:83491,ENSEMBL:ENSMUSG00000041805	MGI:1890541	protein coding gene	preferentially expressed antigen in melanoma-like 1
4	pseudogene	143.4023	143.4034	positive	MGI_C57BL6J_3649502	Gm13045	ENSEMBL:ENSMUSG00000082407	MGI:3649502	pseudogene	predicted gene 13045
4	gene	143.4123	143.4211	positive	MGI_C57BL6J_2140473	Pramef8	NCBI_Gene:242736,ENSEMBL:ENSMUSG00000046862	MGI:2140473	protein coding gene	PRAME family member 8
4	gene	143.4372	143.4503	negative	MGI_C57BL6J_2684051	Oog4	NCBI_Gene:242737,ENSEMBL:ENSMUSG00000047799	MGI:2684051	protein coding gene	oogenesin 4
4	pseudogene	143.4568	143.4606	negative	MGI_C57BL6J_3651155	Gm13042	NCBI_Gene:666015,ENSEMBL:ENSMUSG00000083930	MGI:3651155	pseudogene	predicted gene 13042
4	pseudogene	143.4643	143.4648	negative	MGI_C57BL6J_3649503	Gm13046	ENSEMBL:ENSMUSG00000084059	MGI:3649503	pseudogene	predicted gene 13046
4	pseudogene	143.4994	143.5025	positive	MGI_C57BL6J_3649499	Gm13041	NCBI_Gene:626700,ENSEMBL:ENSMUSG00000083403	MGI:3649499	pseudogene	predicted gene 13041
4	gene	143.5113	143.5178	positive	MGI_C57BL6J_3649500	Gm13043	NCBI_Gene:545693,ENSEMBL:ENSMUSG00000095409	MGI:3649500	protein coding gene	predicted gene 13043
4	gene	143.5360	143.5425	positive	MGI_C57BL6J_3649498	Gm13040	NCBI_Gene:100040854,ENSEMBL:ENSMUSG00000070616	MGI:3649498	protein coding gene	predicted gene 13040
4	gene	143.5517	143.5582	positive	MGI_C57BL6J_3649690	Gm13057	NCBI_Gene:100040861,ENSEMBL:ENSMUSG00000096154	MGI:3649690	protein coding gene	predicted gene 13057
4	gene	143.5517	143.5738	positive	MGI_C57BL6J_3525148	BC080695	NCBI_Gene:329986,ENSEMBL:ENSMUSG00000070618	MGI:3525148	protein coding gene	cDNA sequence BC080695
4	pseudogene	143.5950	143.6010	negative	MGI_C57BL6J_3650002	Gm13058	NCBI_Gene:666049,ENSEMBL:ENSMUSG00000081523	MGI:3650002	pseudogene	predicted gene 13058
4	pseudogene	143.6116	143.6122	negative	MGI_C57BL6J_3650235	Gm13080	NCBI_Gene:100044633,ENSEMBL:ENSMUSG00000044377	MGI:3650235	pseudogene	predicted gene 13080
4	gene	143.6150	143.6187	positive	MGI_C57BL6J_3650232	Gm13083	NCBI_Gene:279185,ENSEMBL:ENSMUSG00000066688	MGI:3650232	protein coding gene	predicted gene 13083
4	gene	143.6538	143.6606	negative	MGI_C57BL6J_3649971	Gm13088	NCBI_Gene:277668,ENSEMBL:ENSMUSG00000078513	MGI:3649971	protein coding gene	predicted gene 13088
4	pseudogene	143.6631	143.6638	negative	MGI_C57BL6J_3650236	Gm13085	ENSEMBL:ENSMUSG00000084351	MGI:3650236	pseudogene	predicted gene 13085
4	pseudogene	143.6711	143.6736	positive	MGI_C57BL6J_3650233	Gm13082	NCBI_Gene:100040924,ENSEMBL:ENSMUSG00000081227	MGI:3650233	pseudogene	predicted gene 13082
4	pseudogene	143.6819	143.6853	positive	MGI_C57BL6J_5826498	Gm46861	NCBI_Gene:108168961	MGI:5826498	pseudogene	predicted gene, 46861
4	gene	143.6965	143.7027	negative	MGI_C57BL6J_3649972	Gm13089	NCBI_Gene:277667,ENSEMBL:ENSMUSG00000070617	MGI:3649972	protein coding gene	predicted gene 13089
4	gene	143.7195	143.7292	positive	MGI_C57BL6J_3650231	Gm13078	NCBI_Gene:277666,ENSEMBL:ENSMUSG00000046435	MGI:3650231	protein coding gene	predicted gene 13078
4	pseudogene	143.7353	143.7356	negative	MGI_C57BL6J_3649970	Gm13087	ENSEMBL:ENSMUSG00000082717	MGI:3649970	pseudogene	predicted gene 13087
4	pseudogene	143.7458	143.7514	positive	MGI_C57BL6J_3650234	Gm13081	ENSEMBL:ENSMUSG00000082030	MGI:3650234	pseudogene	predicted gene 13081
4	gene	143.7893	143.7956	positive	MGI_C57BL6J_3650478	Gm13023	NCBI_Gene:194227,ENSEMBL:ENSMUSG00000066031	MGI:3650478	protein coding gene	predicted gene 13023
4	gene	143.8092	143.8161	negative	MGI_C57BL6J_3650237	Gm13084	NCBI_Gene:381569,ENSEMBL:ENSMUSG00000059218	MGI:3650237	protein coding gene	predicted gene 13084
4	gene	143.8465	143.8536	positive	MGI_C57BL6J_3650203	Gm13103	NCBI_Gene:194225,ENSEMBL:ENSMUSG00000029451	MGI:3650203	protein coding gene	predicted gene 13103
4	gene	143.8942	143.9004	negative	MGI_C57BL6J_3649940	Pramef6	NCBI_Gene:195555,ENSEMBL:ENSMUSG00000078512	MGI:3649940	protein coding gene	PRAME family member 6
4	pseudogene	143.9138	143.9167	positive	MGI_C57BL6J_3650205	Gm13100	NCBI_Gene:194224,ENSEMBL:ENSMUSG00000083749	MGI:3650205	pseudogene	predicted gene 13100
4	pseudogene	143.9285	143.9308	negative	MGI_C57BL6J_3651761	Gm13106	NCBI_Gene:108169006,ENSEMBL:ENSMUSG00000084123	MGI:3651761	pseudogene	predicted gene 13106
4	gene	143.9482	143.9510	negative	MGI_C57BL6J_3649968	Pramef25	NCBI_Gene:329984,ENSEMBL:ENSMUSG00000078511	MGI:3649968	protein coding gene	PRAME family member 25
4	gene	143.9641	143.9669	negative	MGI_C57BL6J_3650204	Gm13101	NCBI_Gene:626922,ENSEMBL:ENSMUSG00000078510	MGI:3650204	protein coding gene	predicted gene 13101
4	gene	143.9911	143.9944	negative	MGI_C57BL6J_3650199	Pramef17	NCBI_Gene:626943,ENSEMBL:ENSMUSG00000078509	MGI:3650199	protein coding gene	PRAME family member 17
4	pseudogene	144.0336	144.0356	positive	MGI_C57BL6J_3650198	Gm13108	NCBI_Gene:100534283,ENSEMBL:ENSMUSG00000083456	MGI:3650198	pseudogene	predicted gene 13108
4	pseudogene	144.0410	144.0425	negative	MGI_C57BL6J_3650202	Gm13104	NCBI_Gene:436146,ENSEMBL:ENSMUSG00000095987	MGI:3650202	pseudogene	predicted gene 13104
4	gene	144.0591	144.0693	positive	MGI_C57BL6J_2156377	Pramel4	NCBI_Gene:347710,ENSEMBL:ENSMUSG00000073724	MGI:2156377	protein coding gene	preferentially expressed antigen in melanoma like 4
4	gene	144.0874	144.0909	positive	MGI_C57BL6J_5625252	Gm42367	NCBI_Gene:108168962	MGI:5625252	protein coding gene	predicted gene, 42367
4	gene	144.0999	144.1101	positive	MGI_C57BL6J_3703005	Gm13102	NCBI_Gene:100041077,ENSEMBL:ENSMUSG00000073723	MGI:3703005	protein coding gene	predicted gene 13102
4	gene	144.1576	144.1627	negative	MGI_C57BL6J_2684047	Oog3	NCBI_Gene:100012,ENSEMBL:ENSMUSG00000050810	MGI:2684047	protein coding gene	oogenesin 3
4	gene	144.1907	144.1969	positive	MGI_C57BL6J_2684035	Oog2	NCBI_Gene:381570,ENSEMBL:ENSMUSG00000066030	MGI:2684035	protein coding gene	oogenesin 2
4	gene	144.2068	144.2133	negative	MGI_C57BL6J_2140708	C87977	NCBI_Gene:97187,ENSEMBL:ENSMUSG00000046262	MGI:2140708	protein coding gene	expressed sequence C87977
4	pseudogene	144.2478	144.2483	positive	MGI_C57BL6J_3651473	Gm13123	ENSEMBL:ENSMUSG00000083708	MGI:3651473	pseudogene	predicted gene 13123
4	pseudogene	144.2557	144.2576	negative	MGI_C57BL6J_5434367	Gm21012	NCBI_Gene:100534281	MGI:5434367	pseudogene	predicted gene, 21012
4	gene	144.2706	144.2805	negative	MGI_C57BL6J_2156389	Pramel5	NCBI_Gene:384077,ENSEMBL:ENSMUSG00000036749	MGI:2156389	protein coding gene	preferentially expressed antigen in melanoma like 5
4	pseudogene	144.2967	144.2981	positive	MGI_C57BL6J_3651691	Gm13120	NCBI_Gene:666150,ENSEMBL:ENSMUSG00000095960	MGI:3651691	pseudogene	predicted gene 13120
4	pseudogene	144.3030	144.3049	negative	MGI_C57BL6J_3651258	Gm13130	NCBI_Gene:100534282,ENSEMBL:ENSMUSG00000080943	MGI:3651258	pseudogene	predicted gene 13130
4	gene	144.3302	144.3335	positive	MGI_C57BL6J_3651261	Gm13128	NCBI_Gene:626995,ENSEMBL:ENSMUSG00000078508	MGI:3651261	protein coding gene	predicted gene 13128
4	pseudogene	144.3456	144.3460	negative	MGI_C57BL6J_3651474	Gm13122	ENSEMBL:ENSMUSG00000084312	MGI:3651474	pseudogene	predicted gene 13122
4	gene	144.3579	144.3644	positive	MGI_C57BL6J_3651680	Gm13119	NCBI_Gene:433779,ENSEMBL:ENSMUSG00000070619	MGI:3651680	protein coding gene	predicted gene 13119
4	gene	144.3728	144.3779	negative	MGI_C57BL6J_3712553	Pramef20	NCBI_Gene:627009,ENSEMBL:ENSMUSG00000073721	MGI:3712553	protein coding gene	PRAME family member 20
4	gene	144.3917	144.4085	negative	MGI_C57BL6J_1924882	Pramef12	NCBI_Gene:77632,ENSEMBL:ENSMUSG00000028591	MGI:1924882	protein coding gene	PRAME family member 12
4	gene	144.4049	144.4063	positive	MGI_C57BL6J_1925973	Pramef12os	ENSEMBL:ENSMUSG00000028590	MGI:1925973	antisense lncRNA gene	PRAME family member 12, opposite strand
4	gene	144.4182	144.4388	negative	MGI_C57BL6J_1916614	1700012P22Rik	NCBI_Gene:69364,ENSEMBL:ENSMUSG00000028589	MGI:1916614	protein coding gene	RIKEN cDNA 1700012P22 gene
4	gene	144.4512	144.4536	negative	MGI_C57BL6J_3642412	Gm9944	ENSEMBL:ENSMUSG00000095213	MGI:3642412	protein coding gene	predicted gene 9944
4	gene	144.4538	144.4638	negative	MGI_C57BL6J_2685281	Aadacl3	NCBI_Gene:230883,ENSEMBL:ENSMUSG00000078507	MGI:2685281	protein coding gene	arylacetamide deacetylase like 3
4	pseudogene	144.4984	144.4989	negative	MGI_C57BL6J_3651681	Gm13118	NCBI_Gene:100417902,ENSEMBL:ENSMUSG00000082835	MGI:3651681	pseudogene	predicted gene 13118
4	gene	144.5198	144.5294	positive	MGI_C57BL6J_2685880	Aadacl4fm1	NCBI_Gene:381572,ENSEMBL:ENSMUSG00000028593	MGI:2685880	protein coding gene	AADACL4 family member 1
4	pseudogene	144.5264	144.5270	negative	MGI_C57BL6J_3650486	Gm13121	NCBI_Gene:100041232,ENSEMBL:ENSMUSG00000083390	MGI:3650486	pseudogene	predicted gene 13121
4	pseudogene	144.5454	144.5486	negative	MGI_C57BL6J_3651475	Gm13126	NCBI_Gene:666194,ENSEMBL:ENSMUSG00000082418	MGI:3651475	pseudogene	predicted gene 13126
4	gene	144.5550	144.5651	negative	MGI_C57BL6J_3652194	Aadacl4fm2	NCBI_Gene:627085,ENSEMBL:ENSMUSG00000078506	MGI:3652194	protein coding gene	AADACL4 family member 2
4	pseudogene	144.5871	144.5890	positive	MGI_C57BL6J_3651260	Gm13127	NCBI_Gene:666215,ENSEMBL:ENSMUSG00000070610	MGI:3651260	pseudogene	predicted gene 13127
4	gene	144.6137	144.6234	positive	MGI_C57BL6J_3650257	Aadacl4	NCBI_Gene:435815,ENSEMBL:ENSMUSG00000070609	MGI:3650257	protein coding gene	arylacetamide deacetylase like 4
4	gene	144.6699	144.6864	negative	MGI_C57BL6J_2685282	Aadacl4fm4	NCBI_Gene:230890,ENSEMBL:ENSMUSG00000078505	MGI:2685282	protein coding gene	AADACL4 family member 4
4	gene	144.7032	144.7215	negative	MGI_C57BL6J_3650721	AAdacl4fm3	NCBI_Gene:546849,ENSEMBL:ENSMUSG00000041735	MGI:3650721	protein coding gene	AADACL4 family member 3
4	gene	144.7656	144.7658	negative	MGI_C57BL6J_5455715	Gm25938	ENSEMBL:ENSMUSG00000077327	MGI:5455715	snRNA gene	predicted gene, 25938
4	gene	144.7772	144.7866	negative	MGI_C57BL6J_2685284	Aadacl4fm5	NCBI_Gene:329993,ENSEMBL:ENSMUSG00000078504	MGI:2685284	protein coding gene	AADACL4 family member 5
4	pseudogene	144.7918	144.7928	positive	MGI_C57BL6J_1859808	Prdx2-ps2	NCBI_Gene:666242,ENSEMBL:ENSMUSG00000083998	MGI:1859808	pseudogene	peroxiredoxin 2, pseudogene 2
4	pseudogene	144.8113	144.8120	negative	MGI_C57BL6J_5826527	Gm46890	NCBI_Gene:108169007	MGI:5826527	pseudogene	predicted gene, 46890
4	gene	144.8554	144.8987	negative	MGI_C57BL6J_5826513	Gm46876	NCBI_Gene:108168986	MGI:5826513	lncRNA gene	predicted gene, 46876
4	gene	144.8926	144.9282	positive	MGI_C57BL6J_1315215	Dhrs3	NCBI_Gene:20148,ENSEMBL:ENSMUSG00000066026	MGI:1315215	protein coding gene	dehydrogenase/reductase (SDR family) member 3
4	gene	144.9047	145.1954	negative	MGI_C57BL6J_2448530	Vps13d	NCBI_Gene:230895,ENSEMBL:ENSMUSG00000020220	MGI:2448530	protein coding gene	vacuolar protein sorting 13D
4	gene	144.9386	144.9542	negative	MGI_C57BL6J_5625229	Gm42344	NCBI_Gene:105247205	MGI:5625229	lncRNA gene	predicted gene, 42344
4	gene	144.9572	144.9588	negative	MGI_C57BL6J_5611302	Gm38074	ENSEMBL:ENSMUSG00000103911	MGI:5611302	unclassified gene	predicted gene, 38074
4	gene	144.9634	144.9656	positive	MGI_C57BL6J_5595476	Gm36317	NCBI_Gene:102640189	MGI:5595476	lncRNA gene	predicted gene, 36317
4	gene	145.1450	145.1510	positive	MGI_C57BL6J_5625228	Gm42343	NCBI_Gene:105247204	MGI:5625228	lncRNA gene	predicted gene, 42343
4	gene	145.2124	145.2469	negative	MGI_C57BL6J_1314883	Tnfrsf1b	NCBI_Gene:21938,ENSEMBL:ENSMUSG00000028599	MGI:1314883	protein coding gene	tumor necrosis factor receptor superfamily, member 1b
4	gene	145.2486	145.2650	negative	MGI_C57BL6J_5595392	Gm36233	NCBI_Gene:102640078	MGI:5595392	lncRNA gene	predicted gene, 36233
4	gene	145.2671	145.3152	negative	MGI_C57BL6J_99908	Tnfrsf8	NCBI_Gene:21941,ENSEMBL:ENSMUSG00000028602	MGI:99908	protein coding gene	tumor necrosis factor receptor superfamily, member 8
4	pseudogene	145.3909	145.3917	positive	MGI_C57BL6J_3650678	Gm13024	NCBI_Gene:666282,ENSEMBL:ENSMUSG00000082758	MGI:3650678	pseudogene	predicted gene 13024
4	pseudogene	145.4043	145.4044	positive	MGI_C57BL6J_3652162	Gm13224	ENSEMBL:ENSMUSG00000084272	MGI:3652162	pseudogene	predicted gene 13224
4	gene	145.4102	145.4498	positive	MGI_C57BL6J_3651931	Platr16	ENSEMBL:ENSMUSG00000085101	MGI:3651931	lncRNA gene	pluripotency associated transcript 16
4	pseudogene	145.4334	145.4508	positive	MGI_C57BL6J_5625231	Gm42346	NCBI_Gene:105247207	MGI:5625231	pseudogene	predicted gene, 42346
4	pseudogene	145.4467	145.4509	positive	MGI_C57BL6J_3651934	Gm13230	ENSEMBL:ENSMUSG00000082082	MGI:3651934	pseudogene	predicted gene 13230
4	pseudogene	145.4556	145.4564	positive	MGI_C57BL6J_3652163	Gm13223	NCBI_Gene:100418367,ENSEMBL:ENSMUSG00000083081	MGI:3652163	pseudogene	predicted gene 13223
4	pseudogene	145.4642	145.4680	positive	MGI_C57BL6J_2443330	Smarca5-ps	NCBI_Gene:545700,ENSEMBL:ENSMUSG00000052912	MGI:2443330	pseudogene	SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene
4	pseudogene	145.4690	145.4716	negative	MGI_C57BL6J_3651933	Gm13229	NCBI_Gene:102634135,ENSEMBL:ENSMUSG00000087076	MGI:3651933	pseudogene	predicted gene 13229
4	gene	145.5108	145.5392	positive	MGI_C57BL6J_3652161	Zfp990	NCBI_Gene:101056073,ENSEMBL:ENSMUSG00000078503	MGI:3652161	protein coding gene	zinc finger protein 990
4	pseudogene	145.5605	145.5609	positive	MGI_C57BL6J_5439447	Gm21978	NCBI_Gene:100125275,ENSEMBL:ENSMUSG00000096864	MGI:5439447	pseudogene	predicted gene 21978
4	pseudogene	145.5745	145.5752	positive	MGI_C57BL6J_3651932	Gm13228	ENSEMBL:ENSMUSG00000082352	MGI:3651932	pseudogene	predicted gene 13228
4	pseudogene	145.5769	145.5773	negative	MGI_C57BL6J_3651282	Gm13226	NCBI_Gene:545701,ENSEMBL:ENSMUSG00000083454	MGI:3651282	pseudogene	predicted gene 13226
4	pseudogene	145.5790	145.5792	positive	MGI_C57BL6J_3652164	Gm13222	ENSEMBL:ENSMUSG00000080732	MGI:3652164	pseudogene	predicted gene 13222
4	gene	145.5852	145.6253	positive	MGI_C57BL6J_3651014	Gm13212	NCBI_Gene:433801,ENSEMBL:ENSMUSG00000078502	MGI:3651014	protein coding gene	predicted gene 13212
4	gene	145.6020	145.7124	negative	MGI_C57BL6J_5477257	Gm26763	NCBI_Gene:102633440,ENSEMBL:ENSMUSG00000097661	MGI:5477257	lncRNA gene	predicted gene, 26763
4	pseudogene	145.6325	145.6333	positive	MGI_C57BL6J_3649926	Gm13234	NCBI_Gene:666334,ENSEMBL:ENSMUSG00000083562	MGI:3649926	pseudogene	predicted gene 13234
4	pseudogene	145.6412	145.6445	positive	MGI_C57BL6J_3649243	Gm13231	NCBI_Gene:545703,ENSEMBL:ENSMUSG00000081885	MGI:3649243	pseudogene	predicted gene 13231
4	pseudogene	145.6467	145.6472	negative	MGI_C57BL6J_3649659	Gm13249	NCBI_Gene:384081,ENSEMBL:ENSMUSG00000095517	MGI:3649659	pseudogene	predicted gene 13249
4	gene	145.6707	145.7044	positive	MGI_C57BL6J_3712454	Zfp980	NCBI_Gene:100041379,ENSEMBL:ENSMUSG00000058186	MGI:3712454	protein coding gene	zinc finger protein 980
4	pseudogene	145.6898	145.6905	positive	MGI_C57BL6J_3650779	Gm13239	NCBI_Gene:666349,ENSEMBL:ENSMUSG00000082615	MGI:3650779	pseudogene	predicted gene 13239
4	pseudogene	145.7017	145.7760	positive	MGI_C57BL6J_3761370	Vmn2r-ps15	NCBI_Gene:100125279,ENSEMBL:ENSMUSG00000094177	MGI:3761370	pseudogene	vomeronasal 2, receptor, pseudogene 15
4	pseudogene	145.7294	145.7304	negative	MGI_C57BL6J_3649252	Gm13232	NCBI_Gene:666351,ENSEMBL:ENSMUSG00000084279	MGI:3649252	pseudogene	predicted gene 13232
4	pseudogene	145.7457	145.7474	positive	MGI_C57BL6J_3650036	Gm13244	NCBI_Gene:100534387,ENSEMBL:ENSMUSG00000082334	MGI:3650036	pseudogene	predicted gene 13244
4	gene	145.7629	145.7650	positive	MGI_C57BL6J_3705163	Gm13236	ENSEMBL:ENSMUSG00000087513	MGI:3705163	lncRNA gene	predicted gene 13236
4	pseudogene	145.7743	145.7753	positive	MGI_C57BL6J_3649654	Gm13243	NCBI_Gene:100417615,ENSEMBL:ENSMUSG00000094417	MGI:3649654	pseudogene	predicted gene 13243
4	pseudogene	145.7895	145.8320	positive	MGI_C57BL6J_1917255	Znf41-ps	NCBI_Gene:70005,ENSEMBL:ENSMUSG00000084350	MGI:1917255	pseudogene	ZNF41, pseudogene
4	pseudogene	145.8372	145.8380	positive	MGI_C57BL6J_3652104	Gm13238	NCBI_Gene:236069,ENSEMBL:ENSMUSG00000096233	MGI:3652104	pseudogene	predicted gene 13238
4	pseudogene	145.8435	145.8447	negative	MGI_C57BL6J_3649657	Gm13246	NCBI_Gene:102633201,ENSEMBL:ENSMUSG00000083235	MGI:3649657	pseudogene	predicted gene 13246
4	gene	145.8688	145.9000	positive	MGI_C57BL6J_3649925	Zfp986	ENSEMBL:ENSMUSG00000078500	MGI:3649925	protein coding gene	zinc finger protein 986
4	pseudogene	146.0588	146.0595	positive	MGI_C57BL6J_3650250	Gm13036	NCBI_Gene:100418368,ENSEMBL:ENSMUSG00000081595	MGI:3650250	pseudogene	predicted gene 13036
4	pseudogene	146.0675	146.0709	positive	MGI_C57BL6J_3650252	Gm13034	NCBI_Gene:627585,ENSEMBL:ENSMUSG00000082195	MGI:3650252	pseudogene	predicted gene 13034
4	pseudogene	146.0732	146.0737	negative	MGI_C57BL6J_3650251	Gm13035	NCBI_Gene:102637947,ENSEMBL:ENSMUSG00000083733	MGI:3650251	pseudogene	predicted gene 13035
4	gene	146.0973	146.1266	positive	MGI_C57BL6J_3702694	Zfp987	NCBI_Gene:626316,ENSEMBL:ENSMUSG00000066009	MGI:3702694	protein coding gene	zinc finger protein 987
4	pseudogene	146.1247	146.2649	positive	MGI_C57BL6J_3761372	Vmn2r-ps17	NCBI_Gene:434514,ENSEMBL:ENSMUSG00000095096	MGI:3761372	pseudogene	vomeronasal 2, receptor, pseudogene 17
4	gene	146.1535	147.0250	negative	MGI_C57BL6J_5477067	Gm26573	ENSEMBL:ENSMUSG00000096958	MGI:5477067	lncRNA gene	predicted gene, 26573
4	gene	146.1568	146.1988	positive	MGI_C57BL6J_3705222	Zfp600	NCBI_Gene:667666,ENSEMBL:ENSMUSG00000066007	MGI:3705222	protein coding gene	zinc finger protein 600
4	gene	146.1675	146.2643	negative	MGI_C57BL6J_3650210	Gm13165	NCBI_Gene:105247209,ENSEMBL:ENSMUSG00000086654	MGI:3650210	lncRNA gene	predicted gene 13165
4	pseudogene	146.1781	146.1788	positive	MGI_C57BL6J_3651095	Gm13170	NCBI_Gene:626480,ENSEMBL:ENSMUSG00000081522	MGI:3651095	pseudogene	predicted gene 13170
4	pseudogene	146.2239	146.2248	negative	MGI_C57BL6J_3650208	Gm13167	NCBI_Gene:666474,ENSEMBL:ENSMUSG00000081671	MGI:3650208	pseudogene	predicted gene 13167
4	pseudogene	146.2400	146.2416	positive	MGI_C57BL6J_3651793	Gm13169	NCBI_Gene:100534388,ENSEMBL:ENSMUSG00000084127	MGI:3651793	pseudogene	predicted gene 13169
4	gene	146.2518	146.2784	positive	MGI_C57BL6J_3705130	Gm13166	ENSEMBL:ENSMUSG00000085525	MGI:3705130	lncRNA gene	predicted gene 13166
4	pseudogene	146.2636	146.2642	positive	MGI_C57BL6J_3650212	Gm13168	ENSEMBL:ENSMUSG00000081460	MGI:3650212	pseudogene	predicted gene 13168
4	pseudogene	146.4451	146.6055	positive	MGI_C57BL6J_3761371	Vmn2r-ps16	NCBI_Gene:100125280,ENSEMBL:ENSMUSG00000095460	MGI:3761371	pseudogene	vomeronasal 2, receptor, pseudogene 16
4	gene	146.4490	146.4703	positive	MGI_C57BL6J_3700963	Zfp992	NCBI_Gene:433791,ENSEMBL:ENSMUSG00000070605	MGI:3700963	protein coding gene	zinc finger protein 992
4	pseudogene	146.4748	146.4782	positive	MGI_C57BL6J_3649920	Gm13241	NCBI_Gene:433790,ENSEMBL:ENSMUSG00000073716	MGI:3649920	pseudogene	predicted gene 13241
4	pseudogene	146.4807	146.4809	positive	MGI_C57BL6J_3649656	Gm13245	ENSEMBL:ENSMUSG00000081998	MGI:3649656	pseudogene	predicted gene 13245
4	gene	146.5020	146.5394	positive	MGI_C57BL6J_3700965	Zfp981	NCBI_Gene:100041433,ENSEMBL:ENSMUSG00000056300	MGI:3700965	protein coding gene	zinc finger protein 981
4	gene	146.5091	146.5118	negative	MGI_C57BL6J_5477374	Gm26880	ENSEMBL:ENSMUSG00000096979	MGI:5477374	lncRNA gene	predicted gene, 26880
4	gene	146.5190	146.5469	negative	MGI_C57BL6J_1914774	1700095A21Rik	NCBI_Gene:67524,ENSEMBL:ENSMUSG00000086046	MGI:1914774	lncRNA gene	RIKEN cDNA 1700095A21 gene
4	pseudogene	146.5642	146.5652	negative	MGI_C57BL6J_3649924	Gm13237	NCBI_Gene:666390,ENSEMBL:ENSMUSG00000095865	MGI:3649924	pseudogene	predicted gene 13237
4	pseudogene	146.5800	146.5833	positive	MGI_C57BL6J_3649253	Gm13233	NCBI_Gene:100534386,ENSEMBL:ENSMUSG00000083038	MGI:3649253	pseudogene	predicted gene 13233
4	pseudogene	146.6038	146.6048	positive	MGI_C57BL6J_3650771	Gm13240	NCBI_Gene:100417614,ENSEMBL:ENSMUSG00000096366	MGI:3650771	pseudogene	predicted gene 13240
4	gene	146.6109	146.6584	positive	MGI_C57BL6J_3713585	Zfp993	NCBI_Gene:100503000,ENSEMBL:ENSMUSG00000063245	MGI:3713585	protein coding gene	zinc finger protein 993
4	gene	146.7278	146.7298	negative	MGI_C57BL6J_5589840	Gm30681	NCBI_Gene:102632663	MGI:5589840	lncRNA gene	predicted gene, 30681
4	pseudogene	146.7496	146.7505	negative	MGI_C57BL6J_5434231	Gm20875	NCBI_Gene:100041490	MGI:5434231	pseudogene	predicted gene, 20875
4	pseudogene	146.8166	146.8217	negative	MGI_C57BL6J_5826533	Gm46896	NCBI_Gene:108169015	MGI:5826533	pseudogene	predicted gene, 46896
4	pseudogene	146.8289	146.8382	negative	MGI_C57BL6J_5434437	Gm21082	NCBI_Gene:100861620	MGI:5434437	pseudogene	predicted gene, 21082
4	gene	146.8917	146.9096	negative	MGI_C57BL6J_5434766	Gm21411	ENSEMBL:ENSMUSG00000045699	MGI:5434766	lncRNA gene	predicted gene, 21411
4	pseudogene	146.9324	146.9336	positive	MGI_C57BL6J_5434116	Gm20760	NCBI_Gene:631415,ENSEMBL:ENSMUSG00000093919	MGI:5434116	pseudogene	predicted gene, 20760
4	pseudogene	146.9423	146.9460	positive	MGI_C57BL6J_3649297	Gm13140	NCBI_Gene:626288,ENSEMBL:ENSMUSG00000083027	MGI:3649297	pseudogene	predicted gene 13140
4	pseudogene	146.9481	146.9485	negative	MGI_C57BL6J_3651738	Gm13149	NCBI_Gene:102631940,ENSEMBL:ENSMUSG00000081260	MGI:3651738	pseudogene	predicted gene 13149
4	gene	146.9720	146.9908	positive	MGI_C57BL6J_3651739	Zfp989	ENSEMBL:ENSMUSG00000086147	MGI:3651739	protein coding gene	zinc finger protein 989
4	pseudogene	146.9977	147.0028	positive	MGI_C57BL6J_5826532	Gm46895	NCBI_Gene:108169014	MGI:5826532	pseudogene	predicted gene, 46895
4	gene	147.0182	147.4922	negative	MGI_C57BL6J_2444536	C230088H06Rik	ENSEMBL:ENSMUSG00000097168	MGI:2444536	lncRNA gene	RIKEN cDNA C230088H06 gene
4	gene	147.0219	147.0608	positive	MGI_C57BL6J_1328322	Rex2	NCBI_Gene:100043034,ENSEMBL:ENSMUSG00000067919	MGI:1328322	protein coding gene	reduced expression 2
4	pseudogene	147.0406	147.0414	positive	MGI_C57BL6J_3651987	Gm13153	NCBI_Gene:100417333,ENSEMBL:ENSMUSG00000083704	MGI:3651987	pseudogene	predicted gene 13153
4	gene	147.0634	147.0684	negative	MGI_C57BL6J_1918520	4933438K21Rik	NCBI_Gene:71270,ENSEMBL:ENSMUSG00000093617	MGI:1918520	lncRNA gene	RIKEN cDNA 4933438K21 gene
4	pseudogene	147.0862	147.0870	negative	MGI_C57BL6J_3649984	Gm13160	NCBI_Gene:666514,ENSEMBL:ENSMUSG00000094017	MGI:3649984	pseudogene	predicted gene 13160
4	pseudogene	147.1023	147.1040	positive	MGI_C57BL6J_3651745	Gm13142	NCBI_Gene:100041561,ENSEMBL:ENSMUSG00000081405	MGI:3651745	pseudogene	predicted gene 13142
4	pseudogene	147.1253	147.1258	positive	MGI_C57BL6J_3701119	Gm13162	ENSEMBL:ENSMUSG00000082779	MGI:3701119	pseudogene	predicted pseudogene 13162
4	gene	147.1253	147.3926	positive	MGI_C57BL6J_3701123	Zfp978	NCBI_Gene:108168963,ENSEMBL:ENSMUSG00000078497	MGI:3701123	protein coding gene	zinc finger protein 978
4	pseudogene	147.1261	147.1265	positive	MGI_C57BL6J_3761373	Vmn2r-ps18	NCBI_Gene:100124576,ENSEMBL:ENSMUSG00000094849	MGI:3761373	pseudogene	vomeronasal 2, receptor, pseudogene 18
4	gene	147.1320	147.1806	positive	MGI_C57BL6J_3701604	Zfp991	NCBI_Gene:666532,ENSEMBL:ENSMUSG00000067916	MGI:3701604	protein coding gene	zinc finger protein 991
4	gene	147.1363	147.4570	positive	MGI_C57BL6J_5477118	Gm26624	ENSEMBL:ENSMUSG00000097122	MGI:5477118	lncRNA gene	predicted gene, 26624
4	pseudogene	147.1877	147.1885	positive	MGI_C57BL6J_3651742	Gm13146	NCBI_Gene:384087,ENSEMBL:ENSMUSG00000095054	MGI:3651742	pseudogene	predicted gene 13146
4	pseudogene	147.1941	147.1952	negative	MGI_C57BL6J_3651199	Gm13163	NCBI_Gene:102631726,ENSEMBL:ENSMUSG00000082176	MGI:3651199	pseudogene	predicted gene 13163
4	gene	147.2219	147.2263	positive	MGI_C57BL6J_5625253	Gm42368	NCBI_Gene:105247234	MGI:5625253	protein coding gene	predicted gene, 42368
4	pseudogene	147.2303	147.2593	positive	MGI_C57BL6J_3651740	Gm13147	ENSEMBL:ENSMUSG00000087207	MGI:3651740	pseudogene	predicted gene 13147
4	pseudogene	147.2674	147.2684	positive	MGI_C57BL6J_3649982	Gm13158	NCBI_Gene:102640977,ENSEMBL:ENSMUSG00000081627	MGI:3649982	pseudogene	predicted gene 13158
4	pseudogene	147.2756	147.2793	positive	MGI_C57BL6J_3650404	Gm13135	NCBI_Gene:545716,ENSEMBL:ENSMUSG00000082925	MGI:3650404	pseudogene	predicted gene 13135
4	pseudogene	147.2814	147.2819	negative	MGI_C57BL6J_3651743	Gm13144	NCBI_Gene:666574,ENSEMBL:ENSMUSG00000094318	MGI:3651743	pseudogene	predicted gene 13144
4	gene	147.3057	147.3337	positive	MGI_C57BL6J_3651985	Zfp988	ENSEMBL:ENSMUSG00000078498	MGI:3651985	protein coding gene	zinc finger protein 988
4	pseudogene	147.3789	147.3798	positive	MGI_C57BL6J_3646475	Gm8178	NCBI_Gene:666588,ENSEMBL:ENSMUSG00000096354	MGI:3646475	pseudogene	predicted gene 8178
4	gene	147.3972	147.3997	negative	MGI_C57BL6J_1925446	4930546J17Rik	NA	NA	unclassified gene	RIKEN cDNA 4930546J17 gene
4	gene	147.3998	147.4076	positive	MGI_C57BL6J_5826534	Gm46897	NCBI_Gene:108169016	MGI:5826534	lncRNA gene	predicted gene, 46897
4	gene	147.4117	147.4135	positive	MGI_C57BL6J_5826535	Gm46898	NCBI_Gene:108169017	MGI:5826535	lncRNA gene	predicted gene, 46898
4	pseudogene	147.4430	147.4440	positive	MGI_C57BL6J_3650656	Gm13161	NCBI_Gene:100861575,ENSEMBL:ENSMUSG00000082248	MGI:3650656	pseudogene	predicted gene 13161
4	pseudogene	147.4443	147.4446	positive	MGI_C57BL6J_3761374	Vmn2r-ps19	NCBI_Gene:100125283,ENSEMBL:ENSMUSG00000093975	MGI:3761374	pseudogene	vomeronasal 2, receptor, pseudogene 19
4	gene	147.4924	147.5135	positive	MGI_C57BL6J_3701121	Zfp982	NCBI_Gene:195531,ENSEMBL:ENSMUSG00000078496	MGI:3701121	protein coding gene	zinc finger protein 982
4	pseudogene	147.5205	147.5209	negative	MGI_C57BL6J_3801908	Gm15951	ENSEMBL:ENSMUSG00000081301	MGI:3801908	pseudogene	predicted gene 15951
4	pseudogene	147.5215	147.5219	positive	MGI_C57BL6J_3761375	Vmn2r-ps20	NCBI_Gene:100125298,ENSEMBL:ENSMUSG00000096440	MGI:3761375	pseudogene	vomeronasal 2, receptor, pseudogene 20
4	pseudogene	147.5277	147.5282	negative	MGI_C57BL6J_3651744	Gm13141	ENSEMBL:ENSMUSG00000082599	MGI:3651744	pseudogene	predicted gene 13141
4	gene	147.5402	147.5435	positive	MGI_C57BL6J_3642127	Gm16503	NA	NA	protein coding gene	predicted gene 16503
4	gene	147.5533	147.5852	positive	MGI_C57BL6J_3651986	Zfp985	NCBI_Gene:433804,ENSEMBL:ENSMUSG00000065999	MGI:3651986	protein coding gene	zinc finger protein 985
4	gene	147.6119	147.6425	negative	MGI_C57BL6J_2148252	Zfp979	NCBI_Gene:112422,ENSEMBL:ENSMUSG00000066000	MGI:2148252	protein coding gene	zinc finger protein 979
4	pseudogene	147.6240	147.6249	negative	MGI_C57BL6J_3651982	Gm13155	NCBI_Gene:666618,ENSEMBL:ENSMUSG00000096065	MGI:3651982	pseudogene	predicted gene 13155
4	gene	147.6685	147.6709	negative	MGI_C57BL6J_3802078	Gm16211	ENSEMBL:ENSMUSG00000086130	MGI:3802078	lncRNA gene	predicted gene 16211
4	gene	147.6735	147.7026	negative	MGI_C57BL6J_3650650	Zfp534	NCBI_Gene:100503584,ENSEMBL:ENSMUSG00000062518	MGI:3650650	protein coding gene	zinc finger protein 534
4	pseudogene	147.7328	147.7331	positive	MGI_C57BL6J_3649289	Gm13137	NCBI_Gene:666640,ENSEMBL:ENSMUSG00000096521	MGI:3649289	pseudogene	predicted gene 13137
4	pseudogene	147.7353	147.7390	negative	MGI_C57BL6J_3649290	Gm13136	NCBI_Gene:194189,ENSEMBL:ENSMUSG00000081179	MGI:3649290	pseudogene	predicted gene 13136
4	pseudogene	147.7455	147.7466	negative	MGI_C57BL6J_3651741	Gm13148	NCBI_Gene:666652,ENSEMBL:ENSMUSG00000083642	MGI:3651741	pseudogene	predicted gene 13148
4	gene	147.7540	147.8098	negative	MGI_C57BL6J_3651978	Zfp984	NCBI_Gene:100041677,ENSEMBL:ENSMUSG00000078495	MGI:3651978	protein coding gene	zinc finger protein 984
4	gene	147.7823	147.8098	negative	MGI_C57BL6J_5313154	Gm20707	ENSEMBL:ENSMUSG00000093594	MGI:5313154	lncRNA gene	predicted gene 20707
4	pseudogene	147.8218	147.8222	negative	MGI_C57BL6J_3701125	Rps19-ps3	NCBI_Gene:277692,ENSEMBL:ENSMUSG00000080059	MGI:3701125	pseudogene	ribosomal protein S19, pseudogene 3
4	gene	147.8230	147.8485	negative	MGI_C57BL6J_1922865	Zfp933	NCBI_Gene:242747,ENSEMBL:ENSMUSG00000059423	MGI:1922865	protein coding gene	zinc finger protein 933
4	gene	147.8608	147.8688	negative	MGI_C57BL6J_106506	Miip	NCBI_Gene:28010,ENSEMBL:ENSMUSG00000029022	MGI:106506	protein coding gene	migration and invasion inhibitory protein
4	gene	147.8690	147.8704	positive	MGI_C57BL6J_95595	Fv1	NCBI_Gene:14349,ENSEMBL:ENSMUSG00000070583	MGI:95595	protein coding gene	Friend virus susceptibility 1
4	gene	147.8736	147.9049	negative	MGI_C57BL6J_2442230	Mfn2	NCBI_Gene:170731,ENSEMBL:ENSMUSG00000029020	MGI:2442230	protein coding gene	mitofusin 2
4	pseudogene	147.8937	147.8940	positive	MGI_C57BL6J_3651983	Gm13156	ENSEMBL:ENSMUSG00000083340	MGI:3651983	pseudogene	predicted gene 13156
4	gene	147.9098	147.9368	negative	MGI_C57BL6J_99907	Plod1	NCBI_Gene:18822,ENSEMBL:ENSMUSG00000019055	MGI:99907	protein coding gene	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
4	gene	147.9409	147.9473	positive	MGI_C57BL6J_1924284	2510039O18Rik	NCBI_Gene:77034,ENSEMBL:ENSMUSG00000044496	MGI:1924284	protein coding gene	RIKEN cDNA 2510039O18 gene
4	gene	147.9858	147.9872	positive	MGI_C57BL6J_97368	Nppb	NCBI_Gene:18158,ENSEMBL:ENSMUSG00000029019	MGI:97368	protein coding gene	natriuretic peptide type B
4	gene	148.0007	148.0021	positive	MGI_C57BL6J_97367	Nppa	NCBI_Gene:230899,ENSEMBL:ENSMUSG00000041616	MGI:97367	protein coding gene	natriuretic peptide type A
4	gene	148.0011	148.0040	negative	MGI_C57BL6J_3702728	Gm13054	ENSEMBL:ENSMUSG00000086806	MGI:3702728	lncRNA gene	predicted gene 13054
4	gene	148.0043	148.0389	negative	MGI_C57BL6J_1347049	Clcn6	NCBI_Gene:26372,ENSEMBL:ENSMUSG00000029016	MGI:1347049	protein coding gene	chloride channel, voltage-sensitive 6
4	pseudogene	148.0316	148.0323	positive	MGI_C57BL6J_3651232	Gm13207	NCBI_Gene:100418092,ENSEMBL:ENSMUSG00000083473	MGI:3651232	pseudogene	predicted gene 13207
4	gene	148.0383	148.0596	positive	MGI_C57BL6J_106639	Mthfr	NCBI_Gene:17769,ENSEMBL:ENSMUSG00000029009	MGI:106639	protein coding gene	methylenetetrahydrofolate reductase
4	gene	148.0580	148.0765	negative	MGI_C57BL6J_3649941	Gm13201	NCBI_Gene:102634746,ENSEMBL:ENSMUSG00000078494	MGI:3649941	lncRNA gene	predicted gene 13201
4	pseudogene	148.0680	148.0686	negative	MGI_C57BL6J_3649942	Chchd2-ps	NCBI_Gene:433806,ENSEMBL:ENSMUSG00000094320	MGI:3649942	pseudogene	coiled-coil-helix-coiled-coil-helix domain containing 2, pseudogene
4	gene	148.0771	148.0881	negative	MGI_C57BL6J_1339977	Agtrap	NCBI_Gene:11610,ENSEMBL:ENSMUSG00000029007	MGI:1339977	protein coding gene	angiotensin II, type I receptor-associated protein
4	gene	148.0984	148.1311	negative	MGI_C57BL6J_1917683	Draxin	NCBI_Gene:70433,ENSEMBL:ENSMUSG00000029005	MGI:1917683	protein coding gene	dorsal inhibitory axon guidance protein
4	gene	148.1303	148.1457	positive	MGI_C57BL6J_1919140	Mad2l2	NCBI_Gene:71890,ENSEMBL:ENSMUSG00000029003	MGI:1919140	protein coding gene	MAD2 mitotic arrest deficient-like 2
4	gene	148.1457	148.1521	negative	MGI_C57BL6J_1354743	Fbxo6	NCBI_Gene:50762,ENSEMBL:ENSMUSG00000055401	MGI:1354743	protein coding gene	F-box protein 6
4	gene	148.1469	148.1470	negative	MGI_C57BL6J_5530673	Mir7022	miRBase:MI0022871,NCBI_Gene:102465619,ENSEMBL:ENSMUSG00000099043	MGI:5530673	miRNA gene	microRNA 7022
4	gene	148.1528	148.1605	negative	MGI_C57BL6J_1354744	Fbxo44	NCBI_Gene:230903,ENSEMBL:ENSMUSG00000029001	MGI:1354744	protein coding gene	F-box protein 44
4	gene	148.1602	148.1664	positive	MGI_C57BL6J_2446216	Fbxo2	NCBI_Gene:230904,ENSEMBL:ENSMUSG00000041556	MGI:2446216	protein coding gene	F-box protein 2
4	gene	148.2081	148.2148	negative	MGI_C57BL6J_5591762	Gm32603	NCBI_Gene:102635206	MGI:5591762	lncRNA gene	predicted gene, 32603
4	gene	148.2364	148.2880	negative	MGI_C57BL6J_2444403	Disp3	NCBI_Gene:242748,ENSEMBL:ENSMUSG00000041544	MGI:2444403	protein coding gene	dispatched RND transporter family member 3
4	gene	148.3069	148.3166	positive	MGI_C57BL6J_3651440	Gm13206	ENSEMBL:ENSMUSG00000087027	MGI:3651440	lncRNA gene	predicted gene 13206
4	gene	148.3564	148.3595	negative	MGI_C57BL6J_3650195	Gm13200	ENSEMBL:ENSMUSG00000086326	MGI:3650195	lncRNA gene	predicted gene 13200
4	gene	148.4345	148.4448	negative	MGI_C57BL6J_1918957	Ubiad1	NCBI_Gene:71707,ENSEMBL:ENSMUSG00000047719	MGI:1918957	protein coding gene	UbiA prenyltransferase domain containing 1
4	gene	148.4433	148.4435	negative	MGI_C57BL6J_5453080	Gm23303	ENSEMBL:ENSMUSG00000064648	MGI:5453080	snRNA gene	predicted gene, 23303
4	gene	148.4486	148.5577	positive	MGI_C57BL6J_1928394	Mtor	NCBI_Gene:56717,ENSEMBL:ENSMUSG00000028991	MGI:1928394	protein coding gene	mechanistic target of rapamycin kinase
4	gene	148.4952	148.5005	negative	MGI_C57BL6J_3605801	Angptl7	NCBI_Gene:654812,ENSEMBL:ENSMUSG00000028989	MGI:3605801	protein coding gene	angiopoietin-like 7
4	gene	148.5391	148.5392	positive	MGI_C57BL6J_5453779	Gm24002	ENSEMBL:ENSMUSG00000089081	MGI:5453779	snRNA gene	predicted gene, 24002
4	gene	148.5557	148.5558	positive	MGI_C57BL6J_5453095	Gm23318	ENSEMBL:ENSMUSG00000088625	MGI:5453095	snRNA gene	predicted gene, 23318
4	gene	148.5584	148.5824	positive	MGI_C57BL6J_1355322	Exosc10	NCBI_Gene:50912,ENSEMBL:ENSMUSG00000017264	MGI:1355322	protein coding gene	exosome component 10
4	pseudogene	148.5691	148.5699	negative	MGI_C57BL6J_3651444	Gm13204	ENSEMBL:ENSMUSG00000082860	MGI:3651444	pseudogene	predicted gene 13204
4	gene	148.5847	148.5860	negative	MGI_C57BL6J_3651228	Gm13209	ENSEMBL:ENSMUSG00000087217	MGI:3651228	lncRNA gene	predicted gene 13209
4	gene	148.5915	148.5950	positive	MGI_C57BL6J_102690	Srm	NCBI_Gene:20810,ENSEMBL:ENSMUSG00000006442	MGI:102690	protein coding gene	spermidine synthase
4	gene	148.5949	148.6155	positive	MGI_C57BL6J_1330832	Masp2	NCBI_Gene:17175,ENSEMBL:ENSMUSG00000028979	MGI:1330832	protein coding gene	mannan-binding lectin serine peptidase 2
4	gene	148.6124	148.6270	negative	MGI_C57BL6J_2387629	Tardbp	NCBI_Gene:230908,ENSEMBL:ENSMUSG00000041459	MGI:2387629	protein coding gene	TAR DNA binding protein
4	gene	148.6433	148.6770	positive	MGI_C57BL6J_2685418	Gm572	NCBI_Gene:230909,ENSEMBL:ENSMUSG00000070577	MGI:2685418	protein coding gene	predicted gene 572
4	gene	148.7137	148.7166	positive	MGI_C57BL6J_3651445	Gm13203	ENSEMBL:ENSMUSG00000087273	MGI:3651445	lncRNA gene	predicted gene 13203
4	gene	148.7449	148.7474	negative	MGI_C57BL6J_5592056	Gm32897	NCBI_Gene:102635606	MGI:5592056	lncRNA gene	predicted gene, 32897
4	gene	148.7798	148.7849	negative	MGI_C57BL6J_5625235	Gm42350	NCBI_Gene:105247212	MGI:5625235	lncRNA gene	predicted gene, 42350
4	gene	148.8044	148.9549	positive	MGI_C57BL6J_1196251	Casz1	NCBI_Gene:69743,ENSEMBL:ENSMUSG00000028977	MGI:1196251	protein coding gene	castor zinc finger 1
4	gene	148.8651	148.8675	negative	MGI_C57BL6J_5625237	Gm42352	NCBI_Gene:105247214	MGI:5625237	lncRNA gene	predicted gene, 42352
4	gene	148.9135	148.9143	negative	MGI_C57BL6J_3801757	Gm15969	ENSEMBL:ENSMUSG00000086766	MGI:3801757	lncRNA gene	predicted gene 15969
4	gene	148.9475	148.9497	negative	MGI_C57BL6J_3700976	Gm13205	NCBI_Gene:108168987,ENSEMBL:ENSMUSG00000086606	MGI:3700976	lncRNA gene	predicted gene 13205
4	gene	148.9575	148.9919	positive	MGI_C57BL6J_4937856	Gm17029	NCBI_Gene:102635786,ENSEMBL:ENSMUSG00000086740	MGI:4937856	lncRNA gene	predicted gene 17029
4	gene	148.9605	149.0999	negative	MGI_C57BL6J_1927868	Pex14	NCBI_Gene:56273,ENSEMBL:ENSMUSG00000028975	MGI:1927868	protein coding gene	peroxisomal biogenesis factor 14
4	gene	148.9970	149.0030	negative	MGI_C57BL6J_5625236	Gm42351	NCBI_Gene:105247213	MGI:5625236	lncRNA gene	predicted gene, 42351
4	pseudogene	149.0963	149.0969	positive	MGI_C57BL6J_3779916	Gm9506	NCBI_Gene:670864,ENSEMBL:ENSMUSG00000081086	MGI:3779916	pseudogene	predicted gene 9506
4	gene	149.0989	149.0998	positive	MGI_C57BL6J_5826359	Gm46722	NCBI_Gene:108168707	MGI:5826359	lncRNA gene	predicted gene, 46722
4	gene	149.1041	149.1207	positive	MGI_C57BL6J_1196227	Dffa	NCBI_Gene:13347,ENSEMBL:ENSMUSG00000028974	MGI:1196227	protein coding gene	DNA fragmentation factor, alpha subunit
4	gene	149.1250	149.1268	negative	MGI_C57BL6J_109538	Cort	NCBI_Gene:12854,ENSEMBL:ENSMUSG00000028971	MGI:109538	protein coding gene	cortistatin
4	gene	149.1271	149.1376	negative	MGI_C57BL6J_1917178	Cenps	NCBI_Gene:69928,ENSEMBL:ENSMUSG00000073705	MGI:1917178	protein coding gene	centromere protein S
4	pseudogene	149.1424	149.1435	negative	MGI_C57BL6J_3651234	Rpsa-ps12	NCBI_Gene:666774,ENSEMBL:ENSMUSG00000080746	MGI:3651234	pseudogene	ribosomal protein SA, pseudogene 12
4	gene	149.1500	149.1668	negative	MGI_C57BL6J_97553	Pgd	NCBI_Gene:110208,ENSEMBL:ENSMUSG00000028961	MGI:97553	protein coding gene	phosphogluconate dehydrogenase
4	gene	149.1763	149.3077	negative	MGI_C57BL6J_108426	Kif1b	NCBI_Gene:16561,ENSEMBL:ENSMUSG00000063077	MGI:108426	protein coding gene	kinesin family member 1B
4	gene	149.2552	149.2567	negative	MGI_C57BL6J_3026951	6720462K09Rik	NA	NA	unclassified gene	RIKEN cDNA 6720462K09 gene
4	gene	149.3284	149.4267	negative	MGI_C57BL6J_1927086	Ube4b	NCBI_Gene:63958,ENSEMBL:ENSMUSG00000028960	MGI:1927086	protein coding gene	ubiquitination factor E4B
4	gene	149.3346	149.3359	positive	MGI_C57BL6J_1921560	Ube4bos3	NCBI_Gene:74310,ENSEMBL:ENSMUSG00000085286	MGI:1921560	antisense lncRNA gene	ubiquitination factor E4B, opposite strand 3
4	gene	149.3381	149.3385	positive	MGI_C57BL6J_3651969	Ube4bos2	ENSEMBL:ENSMUSG00000085807	MGI:3651969	antisense lncRNA gene	ubiquitination factor E4B, opposite strand 2
4	gene	149.3479	149.3653	positive	MGI_C57BL6J_1925072	Ube4bos1	ENSEMBL:ENSMUSG00000085819	MGI:1925072	antisense lncRNA gene	ubiquitination factor E4B, opposite strand 1
4	gene	149.4497	149.4665	negative	MGI_C57BL6J_1890409	Rbp7	NCBI_Gene:63954,ENSEMBL:ENSMUSG00000028996	MGI:1890409	protein coding gene	retinol binding protein 7, cellular
4	pseudogene	149.4573	149.4579	positive	MGI_C57BL6J_3651720	Trmt112-ps2	NCBI_Gene:627985,ENSEMBL:ENSMUSG00000070572	MGI:3651720	pseudogene	tRNA methyltransferase 11-2, pseudogene 2
4	gene	149.4676	149.4852	negative	MGI_C57BL6J_1913704	Nmnat1	NCBI_Gene:66454,ENSEMBL:ENSMUSG00000028992	MGI:1913704	protein coding gene	nicotinamide nucleotide adenylyltransferase 1
4	gene	149.4774	149.4843	positive	MGI_C57BL6J_3701129	Tmem274	NCBI_Gene:102636051,ENSEMBL:ENSMUSG00000087198	MGI:3701129	protein coding gene	transmembrame protein 274
4	gene	149.4852	149.4967	positive	MGI_C57BL6J_1916401	Lzic	NCBI_Gene:69151,ENSEMBL:ENSMUSG00000028990	MGI:1916401	protein coding gene	leucine zipper and CTNNBIP1 domain containing
4	pseudogene	149.5006	149.5010	positive	MGI_C57BL6J_3651971	Gm13071	ENSEMBL:ENSMUSG00000083811	MGI:3651971	pseudogene	predicted gene 13071
4	gene	149.5047	149.5052	positive	MGI_C57BL6J_1920314	2900080M03Rik	NA	NA	unclassified gene	RIKEN cDNA 2900080M03 gene
4	gene	149.5172	149.5173	negative	MGI_C57BL6J_5454158	Gm24381	ENSEMBL:ENSMUSG00000084646	MGI:5454158	snRNA gene	predicted gene, 24381
4	gene	149.5182	149.5664	positive	MGI_C57BL6J_1915756	Ctnnbip1	NCBI_Gene:67087,ENSEMBL:ENSMUSG00000028988	MGI:1915756	protein coding gene	catenin beta interacting protein 1
4	gene	149.5379	149.5379	positive	MGI_C57BL6J_5454968	Mir5616	miRBase:MI0019184,NCBI_Gene:100885828,ENSEMBL:ENSMUSG00000093403	MGI:5454968	miRNA gene	microRNA 5616
4	gene	149.5656	149.5678	negative	MGI_C57BL6J_3701131	Gm13066	ENSEMBL:ENSMUSG00000086949	MGI:3701131	lncRNA gene	predicted gene 13066
4	gene	149.5727	149.5740	positive	MGI_C57BL6J_1925218	A930041D05Rik	NA	NA	unclassified gene	RIKEN cDNA A930041D05 gene
4	gene	149.5865	149.6489	positive	MGI_C57BL6J_1929895	Clstn1	NCBI_Gene:65945,ENSEMBL:ENSMUSG00000039953	MGI:1929895	protein coding gene	calsyntenin 1
4	gene	149.6492	149.7026	negative	MGI_C57BL6J_1098211	Pik3cd	NCBI_Gene:18707,ENSEMBL:ENSMUSG00000039936	MGI:1098211	protein coding gene	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta
4	gene	149.6555	149.6556	negative	MGI_C57BL6J_5531294	Mir7023	miRBase:MI0022872,NCBI_Gene:102465983,ENSEMBL:ENSMUSG00000098580	MGI:5531294	miRNA gene	microRNA 7023
4	gene	149.7154	149.7381	negative	MGI_C57BL6J_1196277	Tmem201	NCBI_Gene:230917,ENSEMBL:ENSMUSG00000044700	MGI:1196277	protein coding gene	transmembrane protein 201
4	gene	149.7440	149.7743	negative	MGI_C57BL6J_1917806	Slc25a33	NCBI_Gene:70556,ENSEMBL:ENSMUSG00000028982	MGI:1917806	protein coding gene	solute carrier family 25, member 33
4	gene	149.7485	149.7496	positive	MGI_C57BL6J_3651967	Gm13068	ENSEMBL:ENSMUSG00000085403	MGI:3651967	lncRNA gene	predicted gene 13068
4	gene	149.7763	149.7833	positive	MGI_C57BL6J_3802067	Gm16188	ENSEMBL:ENSMUSG00000085368	MGI:3802067	lncRNA gene	predicted gene 16188
4	gene	149.7784	149.7810	negative	MGI_C57BL6J_3651721	Gm13073	NCBI_Gene:105247217,ENSEMBL:ENSMUSG00000084807	MGI:3651721	lncRNA gene	predicted gene 13073
4	gene	149.7907	149.8025	positive	MGI_C57BL6J_5625239	Gm42354	NCBI_Gene:105247218	MGI:5625239	lncRNA gene	predicted gene, 42354
4	pseudogene	149.7933	149.7934	negative	MGI_C57BL6J_3651736	Gm13065	ENSEMBL:ENSMUSG00000081601	MGI:3651736	pseudogene	predicted gene 13065
4	pseudogene	149.8147	149.8152	negative	MGI_C57BL6J_3651735	Gm13064	ENSEMBL:ENSMUSG00000083173	MGI:3651735	pseudogene	predicted gene 13064
4	gene	149.8177	149.8178	positive	MGI_C57BL6J_4422058	n-R5s193	ENSEMBL:ENSMUSG00000064798	MGI:4422058	rRNA gene	nuclear encoded rRNA 5S 193
4	gene	149.8178	149.8178	positive	MGI_C57BL6J_6096167	Gm47301	ENSEMBL:ENSMUSG00000106221	MGI:6096167	miRNA gene	predicted gene, 47301
4	gene	149.8963	149.9550	negative	MGI_C57BL6J_1921896	Spsb1	NCBI_Gene:74646,ENSEMBL:ENSMUSG00000039911	MGI:1921896	protein coding gene	splA/ryanodine receptor domain and SOCS box containing 1
4	gene	149.9021	149.9081	positive	MGI_C57BL6J_3651970	Gm13070	NCBI_Gene:105247219,ENSEMBL:ENSMUSG00000086767	MGI:3651970	lncRNA gene	predicted gene 13070
4	gene	149.9795	150.0090	negative	MGI_C57BL6J_2140356	H6pd	NCBI_Gene:100198,ENSEMBL:ENSMUSG00000028980	MGI:2140356	protein coding gene	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
4	gene	150.0294	150.0587	positive	MGI_C57BL6J_3651968	Gm13067	NCBI_Gene:102636131,ENSEMBL:ENSMUSG00000086665	MGI:3651968	lncRNA gene	predicted gene 13067
4	gene	150.0685	150.0686	positive	MGI_C57BL6J_3619363	Mir34a	miRBase:MI0000584,NCBI_Gene:723848,ENSEMBL:ENSMUSG00000065493	MGI:3619363	miRNA gene	microRNA 34a
4	gene	150.0685	150.0710	positive	MGI_C57BL6J_5611023	Gm37795	ENSEMBL:ENSMUSG00000102813	MGI:5611023	unclassified gene	predicted gene, 37795
4	gene	150.0874	150.1059	positive	MGI_C57BL6J_2442046	Gpr157	NCBI_Gene:269604,ENSEMBL:ENSMUSG00000047875	MGI:2442046	protein coding gene	G protein-coupled receptor 157
4	gene	150.1139	150.1193	negative	MGI_C57BL6J_3650866	Gm13093	ENSEMBL:ENSMUSG00000087094	MGI:3650866	lncRNA gene	predicted gene 13093
4	gene	150.1193	150.1442	positive	MGI_C57BL6J_1928369	Slc2a5	NCBI_Gene:56485,ENSEMBL:ENSMUSG00000028976	MGI:1928369	protein coding gene	solute carrier family 2 (facilitated glucose transporter), member 5
4	gene	150.1488	150.1689	positive	MGI_C57BL6J_3650865	Slc2a7	NCBI_Gene:435818,ENSEMBL:ENSMUSG00000062064	MGI:3650865	protein coding gene	solute carrier family 2 (facilitated glucose transporter), member 7
4	gene	150.1870	150.2013	negative	MGI_C57BL6J_1333786	Car6	NCBI_Gene:12353,ENSEMBL:ENSMUSG00000028972	MGI:1333786	protein coding gene	carbonic anhydrase 6
4	pseudogene	150.2280	150.2284	positive	MGI_C57BL6J_3650867	Gm13094	ENSEMBL:ENSMUSG00000082140	MGI:3650867	pseudogene	predicted gene 13094
4	gene	150.2367	150.2489	positive	MGI_C57BL6J_95393	Eno1	NCBI_Gene:13806,ENSEMBL:ENSMUSG00000063524	MGI:95393	protein coding gene	enolase 1, alpha non-neuron
4	gene	150.2592	150.2629	positive	MGI_C57BL6J_5592574	Gm33415	NCBI_Gene:102636312	MGI:5592574	lncRNA gene	predicted gene, 33415
4	gene	150.2816	150.6220	positive	MGI_C57BL6J_2683486	Rere	NCBI_Gene:68703,ENSEMBL:ENSMUSG00000039852	MGI:2683486	protein coding gene	arginine glutamic acid dipeptide (RE) repeats
4	pseudogene	150.3151	150.3156	negative	MGI_C57BL6J_3649661	Gm13092	NCBI_Gene:102638183,ENSEMBL:ENSMUSG00000085787	MGI:3649661	pseudogene	predicted gene 13092
4	gene	150.3212	150.3213	positive	MGI_C57BL6J_5452986	Gm23209	ENSEMBL:ENSMUSG00000089292	MGI:5452986	snRNA gene	predicted gene, 23209
4	gene	150.3287	150.3342	positive	MGI_C57BL6J_2443638	D030004A10Rik	NA	NA	unclassified gene	RIKEN cDNA D030004A10 gene
4	gene	150.4163	150.4180	positive	MGI_C57BL6J_2442500	E230012J19Rik	NA	NA	unclassified gene	RIKEN cDNA E230012J19 gene
4	gene	150.4780	150.4802	positive	MGI_C57BL6J_2442856	9430064G09Rik	NA	NA	unclassified gene	RIKEN cDNA 9430064G09 gene
4	gene	150.5119	150.5164	positive	MGI_C57BL6J_5625240	Gm42355	NCBI_Gene:105247220	MGI:5625240	protein coding gene	predicted gene, 42355
4	gene	150.5669	150.5685	negative	MGI_C57BL6J_3649653	Gm13091	ENSEMBL:ENSMUSG00000085213	MGI:3649653	lncRNA gene	predicted gene 13091
4	gene	150.6286	150.6522	negative	MGI_C57BL6J_2653235	Slc45a1	NCBI_Gene:242773,ENSEMBL:ENSMUSG00000039838	MGI:2653235	protein coding gene	solute carrier family 45, member 1
4	gene	150.6682	150.6788	negative	MGI_C57BL6J_3802017	Gm16079	ENSEMBL:ENSMUSG00000085869	MGI:3802017	lncRNA gene	predicted gene 16079
4	gene	150.7045	150.7391	positive	MGI_C57BL6J_5595759	Gm36600	NCBI_Gene:102640566	MGI:5595759	lncRNA gene	predicted gene, 36600
4	gene	150.7762	150.8182	negative	MGI_C57BL6J_5595965	Gm36806	NCBI_Gene:102640831	MGI:5595965	lncRNA gene	predicted gene, 36806
4	gene	150.8077	150.8097	positive	MGI_C57BL6J_5625241	Gm42356	NCBI_Gene:105247221	MGI:5625241	lncRNA gene	predicted gene, 42356
4	gene	150.8257	150.8396	positive	MGI_C57BL6J_3650887	Gm13049	ENSEMBL:ENSMUSG00000085097	MGI:3650887	lncRNA gene	predicted gene 13049
4	gene	150.8282	150.8549	negative	MGI_C57BL6J_1920598	1700045H11Rik	NCBI_Gene:73348,ENSEMBL:ENSMUSG00000078492	MGI:1920598	lncRNA gene	RIKEN cDNA 1700045H11 gene
4	pseudogene	150.8471	150.8475	positive	MGI_C57BL6J_3650886	Rps15a-ps3	NCBI_Gene:108168715,ENSEMBL:ENSMUSG00000084314	MGI:3650886	pseudogene	ribosomal protein S15A, pseudogene 3
4	gene	150.8538	150.8689	positive	MGI_C57BL6J_1921405	Errfi1	NCBI_Gene:74155,ENSEMBL:ENSMUSG00000028967	MGI:1921405	protein coding gene	ERBB receptor feedback inhibitor 1
4	gene	150.8971	150.9144	negative	MGI_C57BL6J_2135637	Park7	NCBI_Gene:57320,ENSEMBL:ENSMUSG00000028964	MGI:2135637	protein coding gene	Parkinson disease (autosomal recessive, early onset) 7
4	gene	150.9146	150.9461	positive	MGI_C57BL6J_1101059	Tnfrsf9	NCBI_Gene:21942,ENSEMBL:ENSMUSG00000028965	MGI:1101059	protein coding gene	tumor necrosis factor receptor superfamily, member 9
4	gene	150.9173	151.8619	negative	MGI_C57BL6J_2140230	Camta1	NCBI_Gene:100072,ENSEMBL:ENSMUSG00000014592	MGI:2140230	protein coding gene	calmodulin binding transcription activator 1
4	gene	150.9647	150.9649	positive	MGI_C57BL6J_5453182	Gm23405	ENSEMBL:ENSMUSG00000064476	MGI:5453182	snRNA gene	predicted gene, 23405
4	gene	150.9656	150.9809	negative	MGI_C57BL6J_5589279	Gm30120	NCBI_Gene:102631903	MGI:5589279	lncRNA gene	predicted gene, 30120
4	gene	150.9786	150.9800	negative	MGI_C57BL6J_1924312	5330422M15Rik	NA	NA	unclassified gene	RIKEN cDNA 5330422M15 gene
4	gene	150.9970	151.0447	negative	MGI_C57BL6J_1277134	Per3	NCBI_Gene:18628,ENSEMBL:ENSMUSG00000028957	MGI:1277134	protein coding gene	period circadian clock 3
4	gene	150.9971	151.0018	positive	MGI_C57BL6J_1346329	Uts2	NCBI_Gene:24111,ENSEMBL:ENSMUSG00000028963	MGI:1346329	protein coding gene	urotensin 2
4	gene	151.0448	151.0591	positive	MGI_C57BL6J_5621414	Gm38529	NCBI_Gene:102641068	MGI:5621414	protein coding gene	predicted gene, 38529
4	gene	151.0473	151.0580	negative	MGI_C57BL6J_1321389	Vamp3	NCBI_Gene:22319,ENSEMBL:ENSMUSG00000028955	MGI:1321389	protein coding gene	vesicle-associated membrane protein 3
4	gene	151.0890	151.0918	positive	MGI_C57BL6J_3650445	Gm13090	NCBI_Gene:105704528,ENSEMBL:ENSMUSG00000078491	MGI:3650445	protein coding gene	predicted gene 13090
4	gene	151.0934	151.1057	positive	MGI_C57BL6J_5826536	Gm46899	NCBI_Gene:108169018	MGI:5826536	lncRNA gene	predicted gene, 46899
4	gene	151.2160	151.2223	positive	MGI_C57BL6J_5589581	Gm30422	NCBI_Gene:102632317	MGI:5589581	lncRNA gene	predicted gene, 30422
4	gene	151.2224	151.2334	positive	MGI_C57BL6J_5825597	Gm45960	NCBI_Gene:108167361	MGI:5825597	lncRNA gene	predicted gene, 45960
4	gene	151.3765	151.3796	positive	MGI_C57BL6J_1914998	4930589P08Rik	ENSEMBL:ENSMUSG00000085593	MGI:1914998	lncRNA gene	RIKEN cDNA 4930589P08 gene
4	gene	151.4552	151.4577	positive	MGI_C57BL6J_5589503	Gm30344	NCBI_Gene:102632204	MGI:5589503	lncRNA gene	predicted gene, 30344
4	gene	151.6386	151.7233	negative	MGI_C57BL6J_5621327	Gm38442	NCBI_Gene:102632096	MGI:5621327	lncRNA gene	predicted gene, 38442
4	gene	151.8406	151.8678	positive	MGI_C57BL6J_5625242	Gm42357	NCBI_Gene:105247222	MGI:5625242	lncRNA gene	predicted gene, 42357
4	gene	151.8623	151.8633	positive	MGI_C57BL6J_1925157	9230110K08Rik	NCBI_Gene:102631977	MGI:1925157	lncRNA gene	RIKEN cDNA 9230110K08 gene
4	gene	151.9160	151.9164	negative	MGI_C57BL6J_5610369	Gm37141	ENSEMBL:ENSMUSG00000104142	MGI:5610369	unclassified gene	predicted gene, 37141
4	gene	151.9324	151.9329	negative	MGI_C57BL6J_1920975	1110001D16Rik	NA	NA	unclassified gene	RIKEN cDNA 1110001D16 gene
4	gene	151.9337	151.9821	positive	MGI_C57BL6J_2443386	Dnajc11	NCBI_Gene:230935,ENSEMBL:ENSMUSG00000039768	MGI:2443386	protein coding gene	DnaJ heat shock protein family (Hsp40) member C11

Multi-qtl (genoprobs, haley knott regression method)

detach("package:qtl2", unload=TRUE)
library(qtl)

cross <- qtl::read.cross("csv", file = "/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_hh/gm_qtl.csv",alleles=c("A","B"))

 --Read the following data:
     161  individuals
     13765  markers
     3  phenotypes
 --Cross type: bc

cross <- qtl::jittermap(cross)

summary(cross)

    Backcross

    No. individuals:    161 

    No. phenotypes:     3 
    Percent phenotyped: 100 100 100 

    No. chromosomes:    19 
        Autosomes:      1 2 3 4 5 6 7 8 9 10 11 12 13 14 16 17 18 19 
        X chr:          X 

    Total markers:      13765 
    No. markers:        2142 1860 1022 570 688 514 1060 294 772 205 718 11 1270 
                        1105 490 291 494 208 51 
    Percent genotyped:  99.5 
    Genotypes (%):    
          Autosomes:    AA:49.9  AB:50.1 
       X chromosome:    AA:51.8  AB:48.2

fitqtl.d1 = cross

qc <- c(3, 4)
qp <- c(29.03815, 69.1085558)
#fitqtl.d1 <- subset(fitqtl.d1, chr=qc)
  
fitqtl.d1 <- qtl::calc.genoprob(fitqtl.d1)
  
qtl <- qtl::makeqtl(fitqtl.d1, qc, qp, what="prob")

# fit an additive QTL model
lod.add.1 <- qtl::fitqtl(fitqtl.d1, pheno.col="ICI.vs.EOI", qtl, formula=y~Q1+Q2,method="hk", model="binary", get.ests=FALSE)
print(summary(lod.add.1))


        fitqtl summary

Method: Haley-Knott regression 
Model:  binary phenotype
Number of observations : 161 

Full model result
----------------------------------  
Model formula: y ~ Q1 + Q2 

      df      LOD     %var Pvalue(Chi2)
Model  2 8.608288 21.82557 2.464407e-09


Drop one QTL at a time ANOVA table: 
----------------------------------  
       df   LOD   %var Pvalue(Chi2)    
3@29.0  1 5.140 12.381     1.14e-06 ***
4@69.1  1 2.244  5.182      0.00131 ** 
---
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1

# fit model with 2 interacting QTLs interacting
lod.1 <- qtl::fitqtl(fitqtl.d1, pheno.col="ICI.vs.EOI", qtl, formula=y~Q1*Q2, method="hk", model="binary", get.ests=FALSE)
print(summary(lod.1))


        fitqtl summary

Method: Haley-Knott regression 
Model:  binary phenotype
Number of observations : 161 

Full model result
----------------------------------  
Model formula: y ~ Q1 + Q2 + Q1:Q2 

      df      LOD     %var Pvalue(Chi2)
Model  3 10.09943 25.08974 4.419161e-10


Drop one QTL at a time ANOVA table: 
----------------------------------  
              df   LOD   %var Pvalue(Chi2)    
3@29.0         2 6.631 15.646     2.34e-07 ***
4@69.1         2 3.735  8.446     0.000184 ***
3@29.0:4@69.1  1 1.491  3.264     0.008780 ** 
---
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1

# fit the model including sex as an interacting covariate
Sex <- data.frame(Sex=pull.pheno(fitqtl.d1, "sex"))

# additive model
lod.sex.add.1 <- qtl::fitqtl(fitqtl.d1, pheno.col="ICI.vs.EOI", qtl, formula=y~Q1+Q2+Sex, cov=Sex, method="hk", model="binary", get.ests=FALSE)
print(summary(lod.sex.add.1))


        fitqtl summary

Method: Haley-Knott regression 
Model:  binary phenotype
Number of observations : 161 

Full model result
----------------------------------  
Model formula: y ~ Q1 + Q2 + Sex 

      df      LOD     %var Pvalue(Chi2)
Model  3 8.608288 21.82557 1.268533e-08


Drop one QTL at a time ANOVA table: 
----------------------------------  
       df   LOD   %var Pvalue(Chi2)    
3@29.0  1 5.140 12.381     1.14e-06 ***
4@69.1  1 2.244  5.182      0.00131 ** 
Sex     1 0.000  0.000      1.00000    
---
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1

#interactive model

lod.sex.1 <- qtl::fitqtl(fitqtl.d1, pheno.col="ICI.vs.EOI", qtl, formula=y~Q1*Q2*Sex, cov=Sex, method="hk", model="binary", get.ests=FALSE)
print(summary(lod.sex.1))


        fitqtl summary

Method: Haley-Knott regression 
Model:  binary phenotype
Number of observations : 161 

Full model result
----------------------------------  
Model formula: y ~ Q1 + Q2 + Sex + Q1:Q2 + Q1:Sex + Q2:Sex + Q1:Q2:Sex 

      df      LOD     %var Pvalue(Chi2)
Model  7 10.09943 25.08974 6.956532e-08


Drop one QTL at a time ANOVA table: 
----------------------------------  
                  df   LOD   %var Pvalue(Chi2)    
3@29.0             4 6.631 15.646      3.8e-06 ***
4@69.1             4 3.735  8.446      0.00177 ** 
Sex                4 0.000  0.000      1.00000    
3@29.0:4@69.1      2 1.491  3.264      0.03227 *  
3@29.0:Sex         2 0.000  0.000      1.00000    
4@69.1:Sex         2 0.000  0.000      1.00000    
3@29.0:4@69.1:Sex  1 0.000  0.000      1.00000    
---
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1

R version 3.6.2 (2019-12-12)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Catalina 10.15.7

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] qtl_1.46-2        abind_1.4-5       reshape2_1.4.4    ggplot2_3.3.5    
 [5] tibble_3.1.2      psych_2.0.7       readxl_1.3.1      cluster_2.1.0    
 [9] dplyr_1.0.8       optparse_1.6.6    rhdf5_2.28.1      mclust_5.4.6     
[13] tidyr_1.0.2       data.table_1.14.0 knitr_1.33        kableExtra_1.1.0 
[17] workflowr_1.6.2  

loaded via a namespace (and not attached):
 [1] httr_1.4.1        bit64_4.0.5       viridisLite_0.4.0 assertthat_0.2.1 
 [5] highr_0.9         blob_1.2.1        cellranger_1.1.0  yaml_2.2.1       
 [9] pillar_1.6.1      RSQLite_2.2.7     backports_1.2.1   lattice_0.20-38  
[13] glue_1.4.2        digest_0.6.27     promises_1.1.0    rvest_0.3.5      
[17] colorspace_2.0-2  htmltools_0.5.1.1 httpuv_1.5.2      plyr_1.8.6       
[21] pkgconfig_2.0.3   purrr_0.3.4       scales_1.1.1      webshot_0.5.2    
[25] whisker_0.4       getopt_1.20.3     later_1.0.0       git2r_0.26.1     
[29] generics_0.0.2    ellipsis_0.3.2    cachem_1.0.5      withr_2.4.2      
[33] cli_3.0.0         mnormt_1.5-7      magrittr_2.0.1    crayon_1.4.1     
[37] memoise_2.0.0     evaluate_0.14     fs_1.4.1          fansi_0.5.0      
[41] nlme_3.1-142      xml2_1.3.1        tools_3.6.2       hms_0.5.3        
[45] lifecycle_1.0.1   stringr_1.4.0     Rhdf5lib_1.6.3    munsell_0.5.0    
[49] compiler_3.6.2    rlang_1.0.2       grid_3.6.2        rstudioapi_0.13  
[53] rmarkdown_2.1     gtable_0.3.0      DBI_1.1.1         R6_2.5.0         
[57] fastmap_1.1.0     bit_4.0.4         utf8_1.2.1        rprojroot_1.3-2  
[61] readr_1.3.1       stringi_1.7.2     parallel_3.6.2    Rcpp_1.0.7       
[65] vctrs_0.3.8       tidyselect_1.1.2  xfun_0.24