QTL Analysis - age of onset [ICI vs EOI] (corrected phenotype with outliers removed if any)

workflowr

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Last updated: 2022-04-14

Checks: 5 2

Knit directory: Serreze-T1D_Workflow/

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Repository version: a8c2d1a

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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-11_peak.marker-UNC20090524_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008229_lod.drop-1.5_5.batches_mis.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008271_lod.drop-1.5_5.batches_mis.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008432_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008627_lod.drop-1.5_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.pbs_scanone_snpsqc_dis_no-x_updated_5.batches_mis.Rdata
    Untracked:  data/percent_missing_id_3.batches.RData
    Untracked:  data/percent_missing_id_4.batches.RData
    Untracked:  data/percent_missing_id_4.batches_bc.RData
    Untracked:  data/percent_missing_id_5.batches.RData
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    Untracked:  data/pheno_BC312.csv
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    Untracked:  data/physical_map_BC312.csv
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Unstaged changes:
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici.vs.eoi_snpsqc_dis_no-x_updated.Rmd
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
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    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/index_5.batches.Rmd
    Modified:   analysis/index_5.batches_additional.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

---

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Loading Data

load("data/gm_allqc_5.batches.RData")

#gm_allqc
gm=gm_allqc
gm

Object of class cross2 (crosstype "bc")

Total individuals              308
No. genotyped individuals      308
No. phenotyped individuals     308
No. with both geno & pheno     308

No. phenotypes                   1
No. covariates                   6
No. phenotype covariates         0

No. chromosomes                 20
Total markers                34537

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
2643 2629 1857 1890 1774 1941 1672 1627 1878 1176 1871 1300 1549 1578 1257  935 
  17   18   19    X 
 501  913 1014 4532 

#pr <- readRDS("data/serreze_probs_allqc.rds")
#pr <- readRDS("data/serreze_probs.rds")

##extracting animals with ici and eoi group status
miceinfo <- gm$covar[gm$covar$group == "EOI" | gm$covar$group == "ICI",]
table(miceinfo$group)

EOI ICI 
164 104 

mice.ids <- rownames(miceinfo)

gm <- gm[mice.ids]
gm

Object of class cross2 (crosstype "bc")

Total individuals              268
No. genotyped individuals      268
No. phenotyped individuals     268
No. with both geno & pheno     268

No. phenotypes                   1
No. covariates                   6
No. phenotype covariates         0

No. chromosomes                 20
Total markers                34537

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
2643 2629 1857 1890 1774 1941 1672 1627 1878 1176 1871 1300 1549 1578 1257  935 
  17   18   19    X 
 501  913 1014 4532 

table(gm$covar$group)

EOI ICI 
164 104 

gm.full <- gm

covars <- read_csv("data/covar_corrected.cleaned_ici.vs.eoi_5.batches_0.csv")
#removing any missing info
missing_ids <- covars[which(covars$"age.of.onset"==""),]$Mouse.ID
length(missing_ids)

[1] 2

missing_ids

[1] "NG00526-ICI-LATE" "NG00522-ICI-LATE"

if(length(missing_ids) != 0){
gm <- gm[paste0("-",as.character(missing_ids)),]
gm
table(gm$covar$group)

#keeping only mouseids in covars
covars <- covars[gm$covar$id,]
table(covars$group)
}

EOI ICI 
164 102 

#covars[covars$age.of.onset==0,]$age.of.onset <- ''


query_variants <- create_variant_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/cc_variants.sqlite")
query_genes <- create_gene_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/mouse_genes_mgi.sqlite")


##removing problmetic marker

gm <- drop_markers(gm, "UNCHS013106")

#pmap_interp = interp_map(map, gm$gmap, gm$pmap)
markers <- marker_names(gm)
gmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_5.batches/genetic_map.csv")
pmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_5.batches/physical_map.csv")
#mapdf <- merge(gmapdf,pmapdf, by=c("marker","chr"), all=T)
#rownames(mapdf) <- mapdf$marker
#mapdf <- mapdf[markers,]
#names(mapdf) <- c('marker','chr','gmapdf','pmapdf')
#mapdfnd <- mapdf[!duplicated(mapdf[c(2:3)]),]

pr.qc <- calc_genoprob(gm)

gm

Object of class cross2 (crosstype "bc")

Total individuals              266
No. genotyped individuals      266
No. phenotyped individuals     266
No. with both geno & pheno     266

No. phenotypes                   1
No. covariates                   6
No. phenotype covariates         0

No. chromosomes                 20
Total markers                34537

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
2643 2629 1857 1890 1774 1941 1672 1627 1878 1176 1871 1300 1549 1578 1257  935 
  17   18   19    X 
 501  913 1014 4532 

Preparing necessary info

covars$age.of.onset <- as.numeric(covars$age.of.onset)
Xcovar <- get_x_covar(gm)
addcovar = model.matrix(~ICI.vs.EOI, data = covars)[,-1]
#addcovar.i = model.matrix(~ICI.vs.EOI, data = covars)[,-1]

K <- calc_kinship(pr.qc, type = "loco")
#heatmap(K[[1]])
K.overall <- calc_kinship(pr.qc, type = "overall")
#heatmap(K.overall)
kinship <- calc_kinship(pr.qc)
heatmap(kinship)

No additive covariates

Significance thresholds

operm <- scan1perm(pr.qc, covars["age.of.onset"], model="normal", n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	2.961612	4.064716
0.05	2.829927	4.021179
0.1	2.664910	3.964247

Genome-wide scan

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
#par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - ICI vs. EOI (no covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')

  }
}


print("with no kinship")

[1] “with no kinship”

outf <- scan1(pr.qc, covars["age.of.onset"], Xcovar=Xcovar, model="normal")

plot_lod(outf,gm$gmap)

print("with normal kinship")

[1] “with normal kinship”

outk <- scan1(pr.qc, covars["age.of.onset"], Xcovar=Xcovar, model="normal", kinship=kinship)

plot_lod(outk,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

out <- scan1(pr.qc, covars["age.of.onset"], Xcovar=Xcovar, model="normal", kinship=K)

plot_lod(out,gm$gmap)

print(paste0("number of samples in analysis = ", as.data.frame(attributes(out)$sample_size)[1,]))

[1] “number of samples in analysis = 266”

LOD peaks

Centimorgan (cM)

peaks<-find_peaks(out, gm$gmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)

if(nrow(peaks) > 0){
peaks$marker <- find_marker(gm$gmap, chr=peaks$chr,pos=peaks$pos)
names(peaks)[2] <- c("phenotype")
peaks <- peaks[-1]

rownames(peaks) <- NULL
print(kable(peaks, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

#plot only peak chromosomes

plot_lod_chr<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (no covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()

  }
}


} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

phenotype	chr	pos	lod	ci_lo	ci_hi	marker
age.of.onset	3	2.28000	3.271087	2.010	2.309	JAX00514662
age.of.onset	3	5.56200	4.623861	5.079	5.822	UNC4813186
age.of.onset	3	6.85700	5.363241	6.356	7.572	UNC4836550
age.of.onset	3	7.69400	5.272756	7.603	10.190	UNCHS008182
age.of.onset	3	10.81500	6.820112	10.282	10.970	UNC4912039
age.of.onset	3	11.39100	6.820114	10.982	11.971	UNC4924377
age.of.onset	3	12.29000	6.701684	12.254	12.989	UNCHS008286
age.of.onset	3	13.56900	6.824508	13.052	15.109	UNC4956618
age.of.onset	3	16.41400	6.758134	15.290	16.966	UNC5008656
age.of.onset	3	18.74600	8.863901	17.482	19.077	UNC5083168
age.of.onset	3	20.71800	8.790740	20.613	20.774	JAX00106957
age.of.onset	3	20.87900	8.416323	20.784	21.549	UNC5192582
age.of.onset	3	21.68733	8.124443	21.580	22.187	UNCHS008613
age.of.onset	3	23.13700	7.597487	22.489	23.199	UNC5262472
age.of.onset	3	24.91600	7.744078	23.380	27.894	UNC5278229
age.of.onset	3	29.00200	6.749618	28.262	30.167	UNCHS008815
age.of.onset	3	31.80500	6.494202	30.203	32.529	UNC5454839
age.of.onset	3	32.82300	5.423616	32.607	33.376	ICR1338
age.of.onset	3	33.72600	5.433222	33.391	33.741	UNCHS009067
age.of.onset	3	34.84100	5.613370	33.825	35.168	JAX00220631
age.of.onset	3	36.06800	5.504415	36.023	37.404	UNC5645844
age.of.onset	3	37.59200	4.032664	37.408	37.640	UNCHS009224
age.of.onset	3	39.17200	4.123442	37.874	39.804	JAX00529707r
age.of.onset	3	40.06700	3.863328	40.024	40.390	UNCHS009383
age.of.onset	3	40.75200	3.370730	40.519	52.879	UNC5778977
age.of.onset	10	38.42500	3.253045	34.740	38.502	JAX00292927
age.of.onset	10	40.50200	3.661798	40.301	41.292	UNC18311938
age.of.onset	10	41.49400	3.481263	41.319	41.720	UNC18343181
age.of.onset	10	42.84900	3.840167	42.028	43.919	UNC18363544
age.of.onset	10	44.15600	3.252524	44.060	56.696	JAX00020646

if(nrow(peaks) < 50 & nrow(peaks) > 0){

for(i in unique(peaks$chr)){
#for (i in 1:nrow(peaks)){
  #plot_lod_chr(out,gm$gmap, peaks$chr[i])
  plot_lod_chr(out,gm$gmap, i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

Megabase (MB)

peaks_mba<-find_peaks(out, gm$pmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)
if(nrow(peaks) > 0){
peaks_mba$marker <- find_marker(gm$pmap, chr=peaks_mba$chr,pos=peaks_mba$pos)
names(peaks_mba)[2] <- c("phenotype")
peaks_mba <- peaks_mba[-1]

rownames(peaks_mba) <- NULL
print(kable(peaks_mba, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

  plot_lod_chr_mb<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (no covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

phenotype	chr	pos	lod	ci_lo	ci_hi	marker
age.of.onset	3	9.258869	3.271087	7.129186	9.402052	JAX00514662
age.of.onset	3	19.486223	4.623861	18.314568	19.729641	UNC4813186
age.of.onset	3	21.048602	5.363241	20.305499	22.035726	UNC4836550
age.of.onset	3	22.709183	5.272756	22.177798	25.286239	UNCHS008182
age.of.onset	3	27.036217	6.820112	25.426933	27.557911	UNCHS008242
age.of.onset	3	28.019689	6.820114	27.583922	28.411523	UNC4924377
age.of.onset	3	28.700046	6.701684	28.647890	30.203812	UNCHS008286
age.of.onset	3	30.369809	6.824508	30.221767	31.081568	UNC4956618
age.of.onset	3	34.019613	6.758134	31.479710	34.955875	UNC5008656
age.of.onset	3	38.948083	8.863901	36.524146	39.720506	UNC5083168
age.of.onset	3	46.399332	8.790740	46.093688	46.773347	JAX00106957
age.of.onset	3	47.518652	8.416323	47.267935	48.887661	UNC5192582
age.of.onset	3	49.609061	8.124443	48.950852	51.245920	UNCHS008613
age.of.onset	3	52.227835	7.597487	51.504201	52.288687	UNC5262472
age.of.onset	3	53.290619	7.744078	52.466515	57.567476	UNC5278229
age.of.onset	3	59.186472	6.749618	58.021842	64.965863	UNCHS008815
age.of.onset	3	68.536022	6.494202	65.480179	70.648825	UNC5454839
age.of.onset	3	73.269966	5.423616	72.338635	73.730105	ICR1338
age.of.onset	3	75.334702	5.433222	73.742144	75.518981	UNCHS009068
age.of.onset	3	78.261340	5.613370	75.789940	79.931821	JAX00220631
age.of.onset	3	81.949482	5.504415	81.864954	83.879902	UNC5645844
age.of.onset	3	84.451661	4.032664	83.892546	84.573833	UNCHS009224
age.of.onset	3	89.537778	4.123442	86.634703	90.662415	JAX00529707
age.of.onset	3	91.300118	3.863328	90.812476	93.632371	UNCHS009383
age.of.onset	3	95.096023	3.370730	93.882933	121.192405	UNC5778977
age.of.onset	10	74.693151	3.253045	66.318309	75.001613	JAX00292927
age.of.onset	10	82.347219	3.661798	81.661568	83.573830	UNC18311938
age.of.onset	10	84.671764	3.481263	84.093735	85.655677	UNC18343181
age.of.onset	10	86.417663	3.840167	86.109709	88.251297	UNC18363544
age.of.onset	10	88.602462	3.252524	88.459680	108.744741	JAX00020646

if(nrow(peaks_mba) < 50 & nrow(peaks_mba) > 0){

for(i in unique(peaks_mba$chr)){
#for (i in 1:nrow(peaks_mba)){
  #plot_lod_chr_mb(out,gm$pmap, peaks_mba$chr[i])
  plot_lod_chr_mb(out,gm$pmap,i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

QTL effects

For each peak LOD location we give a list of gene

if(nrow(peaks) < 50 & nrow(peaks) > 0){
for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE)
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(g, covars[,peaks$phenotype[i]], ylab=peaks$phenotype[i], sort=FALSE)
  title(main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," )"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  pr_sub <- pull_genoprobint(pr.qc, gm$gmap, chr, c(peaks$ci_lo[i], peaks$ci_hi[i]))
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  #coeff <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  #coeff_sub <- scan1coef(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  blup <- scan1blup(pr.qc[,chr], covars[peaks$phenotype[i]])
  blup_sub <- scan1blup(pr_sub[,chr], covars[peaks$phenotype[i]])

  write.csv(as.data.frame(blup_sub), paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-no.covariates_blup_sub_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_0.csv"), quote=F)

  #plot_coef(coeff, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1coeff; positions in cM] )")
  #     )

  #plot_coef(coeff_sub, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1coeff; positions in cM] ) ")
  #     )


  plot_coef(blup, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," [scan1blup; positions in cM] )")
       )

  plot_coef(blup_sub, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i],"; 1.5 LOD drop interval [scan1blup; positions in cM] )")
       )


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  write.csv(genesgss, file=paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-no.covariates_genes_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_0.csv"), quote=F)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  #genesgss <- 
  #table <- 
  #genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")] %>%
  #kable(escape = F,align = c("ccccccccccc")) %>%
  #kable_styling("striped", full_width = T) #%>% 
  #cat #%>%
  #column_spec(1, bold=TRUE)
#
  #print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], escape = F,align = c("ccccccccccc")))

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  #table
  

}

} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	pseudogene	7.192775	7.193210	negative	MGI_C57BL6J_3647094	Gm8823	NCBI_Gene:667801,ENSEMBL:ENSMUSG00000104274	MGI:3647094	pseudogene	predicted gene 8823
3	gene	7.366604	7.445366	positive	MGI_C57BL6J_104747	Pkia	NCBI_Gene:18767,ENSEMBL:ENSMUSG00000027499	MGI:104747	protein coding gene	protein kinase inhibitor, alpha
3	gene	7.408504	7.410589	positive	MGI_C57BL6J_3027006	C530038A18Rik	NA	NA	unclassified gene	RIKEN cDNA C530038A18 gene
3	pseudogene	7.418340	7.418459	negative	MGI_C57BL6J_5611146	Gm37918	ENSEMBL:ENSMUSG00000103274	MGI:5611146	pseudogene	predicted gene, 37918
3	pseudogene	7.454521	7.455539	positive	MGI_C57BL6J_3647097	Gm8826	NCBI_Gene:667807,ENSEMBL:ENSMUSG00000102268	MGI:3647097	pseudogene	predicted gene 8826
3	gene	7.501904	7.502020	negative	MGI_C57BL6J_5453369	Gm23592	ENSEMBL:ENSMUSG00000088484	MGI:5453369	snoRNA gene	predicted gene, 23592
3	gene	7.503415	7.553848	positive	MGI_C57BL6J_1914556	Zc2hc1a	NCBI_Gene:67306,ENSEMBL:ENSMUSG00000043542	MGI:1914556	protein coding gene	zinc finger, C2HC-type containing 1A
3	gene	7.569994	7.613760	negative	MGI_C57BL6J_96561	Il7	NCBI_Gene:16196,ENSEMBL:ENSMUSG00000040329	MGI:96561	protein coding gene	interleukin 7
3	gene	7.576267	7.690001	positive	MGI_C57BL6J_4439609	Gm16685	NCBI_Gene:102634900,ENSEMBL:ENSMUSG00000097804	MGI:4439609	lncRNA gene	predicted gene, 16685
3	pseudogene	7.893335	7.893980	positive	MGI_C57BL6J_5588906	Gm29747	NCBI_Gene:101055938,ENSEMBL:ENSMUSG00000103399	MGI:5588906	pseudogene	predicted gene, 29747
3	gene	7.925303	7.954889	negative	MGI_C57BL6J_1922726	1700010I02Rik	NCBI_Gene:75476,ENSEMBL:ENSMUSG00000100010	MGI:1922726	lncRNA gene	RIKEN cDNA 1700010I02 gene
3	gene	8.019669	8.022831	negative	MGI_C57BL6J_3642332	5330432E05Rik	NCBI_Gene:383820	MGI:3642332	unclassified gene	RIKEN cDNA 5330432E05 gene
3	pseudogene	8.214330	8.216183	positive	MGI_C57BL6J_3646860	Gm7103	NCBI_Gene:633072,ENSEMBL:ENSMUSG00000103725	MGI:3646860	pseudogene	predicted gene 7103
3	gene	8.245438	8.245537	negative	MGI_C57BL6J_3629711	Gt(pU21)108Imeg	NA	NA	unclassified gene	gene trap 108%2c Institute of Molecular Embryology and Genetics
3	pseudogene	8.327322	8.329907	positive	MGI_C57BL6J_3645248	Gm5841	NCBI_Gene:545500,ENSEMBL:ENSMUSG00000103921	MGI:3645248	pseudogene	predicted gene 5841
3	gene	8.429158	8.429264	positive	MGI_C57BL6J_5454391	Gm24614	ENSEMBL:ENSMUSG00000065203	MGI:5454391	snRNA gene	predicted gene, 24614
3	pseudogene	8.461387	8.463098	negative	MGI_C57BL6J_3704094	Gm6194	NCBI_Gene:620966	MGI:3704094	pseudogene	predicted gene 6194
3	pseudogene	8.462228	8.463035	negative	MGI_C57BL6J_1919464	1700003N22Rik	ENSEMBL:ENSMUSG00000102463	MGI:1919464	pseudogene	RIKEN cDNA 1700003N22 gene
3	gene	8.494369	8.499902	negative	MGI_C57BL6J_5624878	Gm41993	NCBI_Gene:105246751	MGI:5624878	lncRNA gene	predicted gene, 41993
3	gene	8.509360	8.561606	positive	MGI_C57BL6J_98241	Stmn2	NCBI_Gene:20257,ENSEMBL:ENSMUSG00000027500	MGI:98241	protein coding gene	stathmin-like 2
3	pseudogene	8.615074	8.616522	negative	MGI_C57BL6J_5011007	Gm18822	NCBI_Gene:100417782,ENSEMBL:ENSMUSG00000098047	MGI:5011007	pseudogene	predicted gene, 18822
3	gene	8.628051	8.632454	positive	MGI_C57BL6J_5591655	Gm32496	NCBI_Gene:102635065,ENSEMBL:ENSMUSG00000104102	MGI:5591655	lncRNA gene	predicted gene, 32496
3	gene	8.663359	8.667256	negative	MGI_C57BL6J_1341800	Hey1	NCBI_Gene:15213,ENSEMBL:ENSMUSG00000040289	MGI:1341800	protein coding gene	hairy/enhancer-of-split related with YRPW motif 1
3	pseudogene	8.673410	8.673722	positive	MGI_C57BL6J_5611235	Gm38007	ENSEMBL:ENSMUSG00000103814	MGI:5611235	pseudogene	predicted gene, 38007
3	gene	8.679359	8.679477	negative	MGI_C57BL6J_5453447	Gm23670	ENSEMBL:ENSMUSG00000088094	MGI:5453447	snoRNA gene	predicted gene, 23670
3	gene	8.679438	8.693098	negative	MGI_C57BL6J_5591720	Gm32561	NCBI_Gene:102635149	MGI:5591720	lncRNA gene	predicted gene, 32561
3	gene	8.732188	8.736639	negative	MGI_C57BL6J_2686488	C230057A21Rik	NCBI_Gene:102635252,ENSEMBL:ENSMUSG00000103346	MGI:2686488	lncRNA gene	RIKEN cDNA C230057A21 gene
3	gene	8.743677	8.746824	positive	MGI_C57BL6J_1923855	1700042O13Rik	NA	NA	lncRNA gene	RIKEN cDNA 1700042O13 gene
3	gene	8.743682	8.746824	negative	MGI_C57BL6J_5610875	Gm37647	ENSEMBL:ENSMUSG00000103256	MGI:5610875	unclassified gene	predicted gene, 37647
3	gene	8.802146	8.923918	negative	MGI_C57BL6J_1913480	Mrps28	NCBI_Gene:66230,ENSEMBL:ENSMUSG00000040269	MGI:1913480	protein coding gene	mitochondrial ribosomal protein S28
3	gene	8.866119	8.881665	positive	MGI_C57BL6J_5624880	Gm41995	NCBI_Gene:105246753	MGI:5624880	lncRNA gene	predicted gene, 41995
3	pseudogene	8.881199	8.881643	positive	MGI_C57BL6J_3705388	Gm15467	ENSEMBL:ENSMUSG00000081594	MGI:3705388	pseudogene	predicted gene 15467
3	pseudogene	8.881990	8.882945	negative	MGI_C57BL6J_3705491	Gm15466	NCBI_Gene:100504173,ENSEMBL:ENSMUSG00000081657	MGI:3705491	pseudogene	predicted gene 15466
3	gene	8.925590	8.928038	positive	MGI_C57BL6J_1918835	9130403I23Rik	NA	NA	unclassified gene	RIKEN cDNA 9130403I23 gene
3	gene	8.925593	9.004771	negative	MGI_C57BL6J_107749	Tpd52	NCBI_Gene:21985,ENSEMBL:ENSMUSG00000027506	MGI:107749	protein coding gene	tumor protein D52
3	gene	9.027570	9.029901	positive	MGI_C57BL6J_5826469	Gm46832	NCBI_Gene:108168912	MGI:5826469	lncRNA gene	predicted gene, 46832
3	pseudogene	9.047171	9.047492	negative	MGI_C57BL6J_5610844	Gm37616	ENSEMBL:ENSMUSG00000103461	MGI:5610844	pseudogene	predicted gene, 37616
3	gene	9.061964	9.071076	positive	MGI_C57BL6J_1922399	4930539M17Rik	NCBI_Gene:75149,ENSEMBL:ENSMUSG00000103116	MGI:1922399	lncRNA gene	RIKEN cDNA 4930539M17 gene
3	pseudogene	9.072767	9.073211	positive	MGI_C57BL6J_3648010	Gm8860	ENSEMBL:ENSMUSG00000103011	MGI:3648010	pseudogene	predicted gene 8860
3	gene	9.157271	9.174711	negative	MGI_C57BL6J_5624881	Gm41996	NCBI_Gene:105246754	MGI:5624881	lncRNA gene	predicted gene, 41996
3	gene	9.177692	9.182437	negative	MGI_C57BL6J_5592177	Gm33018	NCBI_Gene:102635764	MGI:5592177	lncRNA gene	predicted gene, 33018
3	gene	9.250567	9.285333	positive	MGI_C57BL6J_2139883	Zbtb10	NCBI_Gene:229055,ENSEMBL:ENSMUSG00000069114	MGI:2139883	protein coding gene	zinc finger and BTB domain containing 10
3	gene	9.302688	9.343835	negative	MGI_C57BL6J_5624882	Gm41997	NCBI_Gene:105246755	MGI:5624882	lncRNA gene	predicted gene, 41997

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	18.34167	18.46134	negative	MGI_C57BL6J_5589826	Gm30667	NCBI_Gene:102632645,ENSEMBL:ENSMUSG00000102886	MGI:5589826	lncRNA gene	predicted gene, 30667
3	gene	18.46829	18.48048	negative	MGI_C57BL6J_1921209	4930433B08Rik	NCBI_Gene:73959,ENSEMBL:ENSMUSG00000102699	MGI:1921209	lncRNA gene	RIKEN cDNA 4930433B08 gene
3	pseudogene	18.49462	18.53429	positive	MGI_C57BL6J_3644758	Gm6369	NCBI_Gene:622921,ENSEMBL:ENSMUSG00000040217	MGI:3644758	pseudogene	predicted gene 6369
3	pseudogene	18.56449	18.56614	positive	MGI_C57BL6J_97558	Pgk1-ps3	NCBI_Gene:100416868,ENSEMBL:ENSMUSG00000105280	MGI:97558	pseudogene	phosphoglycerate kinase 1, pseudogene 3
3	gene	18.60947	18.61738	negative	MGI_C57BL6J_5589882	Gm30723	NCBI_Gene:102632727	MGI:5589882	lncRNA gene	predicted gene, 30723
3	pseudogene	18.60981	18.61083	negative	MGI_C57BL6J_5610545	Gm37317	ENSEMBL:ENSMUSG00000104091	MGI:5610545	pseudogene	predicted gene, 37317
3	gene	18.61955	18.64309	negative	MGI_C57BL6J_5589948	Gm30789	NCBI_Gene:102632812	MGI:5589948	lncRNA gene	predicted gene, 30789
3	gene	18.62216	18.62614	positive	MGI_C57BL6J_5663081	Gm42944	ENSEMBL:ENSMUSG00000104918	MGI:5663081	unclassified gene	predicted gene 42944
3	pseudogene	18.75308	18.75340	positive	MGI_C57BL6J_5589500	Gm30341	NCBI_Gene:102632201,ENSEMBL:ENSMUSG00000103264	MGI:5589500	pseudogene	predicted gene, 30341
3	gene	19.13140	19.16309	negative	MGI_C57BL6J_1921502	Armc1	NCBI_Gene:74252,ENSEMBL:ENSMUSG00000027599	MGI:1921502	protein coding gene	armadillo repeat containing 1
3	gene	19.14319	19.14390	negative	MGI_C57BL6J_5611207	Gm37979	ENSEMBL:ENSMUSG00000103135	MGI:5611207	unclassified gene	predicted gene, 37979
3	gene	19.18731	19.22082	positive	MGI_C57BL6J_1914722	Mtfr1	NCBI_Gene:67472,ENSEMBL:ENSMUSG00000027601	MGI:1914722	protein coding gene	mitochondrial fission regulator 1
3	gene	19.22311	19.31132	negative	MGI_C57BL6J_1202402	Pde7a	NCBI_Gene:18583,ENSEMBL:ENSMUSG00000069094	MGI:1202402	protein coding gene	phosphodiesterase 7A
3	gene	19.22311	19.22369	negative	MGI_C57BL6J_1921035	4930431H11Rik	NA	NA	unclassified gene	RIKEN cDNA 4930431H11 gene
3	gene	19.22778	19.24099	positive	MGI_C57BL6J_3801946	Gm16093	ENSEMBL:ENSMUSG00000087108	MGI:3801946	lncRNA gene	predicted gene 16093
3	gene	19.31166	19.31374	positive	MGI_C57BL6J_1920375	3110037C07Rik	NA	NA	unclassified gene	RIKEN cDNA 3110037C07 gene
3	gene	19.33077	19.33108	positive	MGI_C57BL6J_5452059	Gm22282	ENSEMBL:ENSMUSG00000089149	MGI:5452059	unclassified non-coding RNA gene	predicted gene, 22282
3	gene	19.37418	19.38763	positive	MGI_C57BL6J_5625073	Gm42188	NCBI_Gene:105247004	MGI:5625073	lncRNA gene	predicted gene, 42188
3	gene	19.50859	19.61086	positive	MGI_C57BL6J_1913576	Dnajc5b	NCBI_Gene:66326,ENSEMBL:ENSMUSG00000027606	MGI:1913576	protein coding gene	DnaJ heat shock protein family (Hsp40) member C5 beta
3	gene	19.56025	19.56042	positive	MGI_C57BL6J_5453107	Gm23330	ENSEMBL:ENSMUSG00000096211	MGI:5453107	snRNA gene	predicted gene, 23330
3	pseudogene	19.58479	19.58554	positive	MGI_C57BL6J_3646012	Gm6141	NCBI_Gene:620290,ENSEMBL:ENSMUSG00000084339	MGI:3646012	pseudogene	predicted pseudogene 6141
3	gene	19.61037	19.62948	negative	MGI_C57BL6J_1920674	1700064H15Rik	NCBI_Gene:102633032,ENSEMBL:ENSMUSG00000082766	MGI:1920674	protein coding gene	RIKEN cDNA 1700064H15 gene
3	gene	19.62796	19.62803	negative	MGI_C57BL6J_4413716	n-TRacg3	NCBI_Gene:102467637	MGI:4413716	tRNA gene	nuclear encoded tRNA arginine 3 (anticodon ACG)
3	gene	19.62835	19.62845	positive	MGI_C57BL6J_4414074	n-TYgta1	NCBI_Gene:102467442	MGI:4414074	tRNA gene	nuclear encoded tRNA tyrosine 1 (anticodon GTA)
3	gene	19.62878	19.62887	positive	MGI_C57BL6J_4414075	n-TYgta2	NCBI_Gene:102467395	MGI:4414075	tRNA gene	nuclear encoded tRNA tyrosine 2 (anticodon GTA)
3	gene	19.62899	19.62907	positive	MGI_C57BL6J_4413687	n-TAagc14	NCBI_Gene:102467233	MGI:4413687	tRNA gene	nuclear encoded tRNA alanine 14 (anticodon AGC)
3	gene	19.64434	19.69242	positive	MGI_C57BL6J_3036269	Trim55	NCBI_Gene:381485,ENSEMBL:ENSMUSG00000060913	MGI:3036269	protein coding gene	tripartite motif-containing 55
3	gene	19.68597	19.68657	positive	MGI_C57BL6J_3642300	BC002189	ENSEMBL:ENSMUSG00000104465	MGI:3642300	lncRNA gene	cDNA sequence BC002189
3	gene	19.69340	19.69540	negative	MGI_C57BL6J_88496	Crh	NCBI_Gene:12918,ENSEMBL:ENSMUSG00000049796	MGI:88496	protein coding gene	corticotropin releasing hormone
3	gene	19.69449	19.70735	positive	MGI_C57BL6J_5625074	Gm42189	NCBI_Gene:105247005	MGI:5625074	lncRNA gene	predicted gene, 42189
3	pseudogene	19.70825	19.70932	negative	MGI_C57BL6J_5011049	Gm18864	NCBI_Gene:100417853,ENSEMBL:ENSMUSG00000102261	MGI:5011049	pseudogene	predicted gene, 18864

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	20.30841	20.30992	positive	MGI_C57BL6J_5663662	Gm43525	ENSEMBL:ENSMUSG00000105208	MGI:5663662	lncRNA gene	predicted gene 43525
3	gene	20.31447	20.36718	negative	MGI_C57BL6J_87965	Agtr1b	NCBI_Gene:11608,ENSEMBL:ENSMUSG00000054988	MGI:87965	protein coding gene	angiotensin II receptor, type 1b
3	pseudogene	20.39101	20.39198	negative	MGI_C57BL6J_5010611	Gm18426	NCBI_Gene:100417153,ENSEMBL:ENSMUSG00000103573	MGI:5010611	pseudogene	predicted gene, 18426
3	gene	20.40250	20.50621	negative	MGI_C57BL6J_5590625	Gm31466	NCBI_Gene:108168860,ENSEMBL:ENSMUSG00000102636	MGI:5590625	lncRNA gene	predicted gene, 31466
3	gene	20.40467	20.40491	positive	MGI_C57BL6J_5662731	Gm42594	ENSEMBL:ENSMUSG00000106442	MGI:5662731	unclassified gene	predicted gene 42594
3	pseudogene	20.78247	20.78407	negative	MGI_C57BL6J_5010676	Gm18491	NCBI_Gene:100417265,ENSEMBL:ENSMUSG00000103460	MGI:5010676	pseudogene	predicted gene, 18491
3	pseudogene	20.78794	20.78815	positive	MGI_C57BL6J_5611551	Gm38323	ENSEMBL:ENSMUSG00000102986	MGI:5611551	pseudogene	predicted gene, 38323
3	pseudogene	20.80448	20.80609	positive	MGI_C57BL6J_5010678	Gm18493	NCBI_Gene:100417268,ENSEMBL:ENSMUSG00000103533	MGI:5010678	pseudogene	predicted gene, 18493
3	gene	20.81639	20.82236	negative	MGI_C57BL6J_5590711	Gm31552	NCBI_Gene:102633820	MGI:5590711	lncRNA gene	predicted gene, 31552
3	gene	20.81962	20.82369	positive	MGI_C57BL6J_5610708	Gm37480	ENSEMBL:ENSMUSG00000102807	MGI:5610708	unclassified gene	predicted gene, 37480
3	pseudogene	21.04945	21.05053	positive	MGI_C57BL6J_3647006	Gm7488	NCBI_Gene:665094,ENSEMBL:ENSMUSG00000039617	MGI:3647006	pseudogene	predicted gene 7488
3	pseudogene	21.11358	21.11400	negative	MGI_C57BL6J_5663297	Gm43160	ENSEMBL:ENSMUSG00000106051	MGI:5663297	pseudogene	predicted gene 43160
3	gene	21.26837	21.26909	negative	MGI_C57BL6J_5579843	Gm29137	ENSEMBL:ENSMUSG00000101897	MGI:5579843	lncRNA gene	predicted gene 29137
3	gene	21.42179	21.48966	negative	MGI_C57BL6J_5590769	Gm31610	NCBI_Gene:102633894	MGI:5590769	lncRNA gene	predicted gene, 31610
3	pseudogene	21.60381	21.60551	positive	MGI_C57BL6J_5663812	Gm43675	ENSEMBL:ENSMUSG00000106085	MGI:5663812	pseudogene	predicted gene 43675
3	pseudogene	21.64839	21.64918	positive	MGI_C57BL6J_5010120	Gm17935	NCBI_Gene:100416137,ENSEMBL:ENSMUSG00000106460	MGI:5010120	pseudogene	predicted gene, 17935
3	gene	21.70282	21.71246	positive	MGI_C57BL6J_5590852	Gm31693	NCBI_Gene:102634003,ENSEMBL:ENSMUSG00000105440	MGI:5590852	lncRNA gene	predicted gene, 31693
3	gene	21.75353	21.80080	negative	MGI_C57BL6J_2442162	7530428D23Rik	NCBI_Gene:319506,ENSEMBL:ENSMUSG00000103441	MGI:2442162	lncRNA gene	RIKEN cDNA 7530428D23 gene
3	gene	21.86417	21.96435	negative	MGI_C57BL6J_5590972	Gm31813	NCBI_Gene:102634161	MGI:5590972	lncRNA gene	predicted gene, 31813
3	gene	21.99768	21.99847	negative	MGI_C57BL6J_5663811	Gm43674	ENSEMBL:ENSMUSG00000106321	MGI:5663811	lncRNA gene	predicted gene 43674
3	pseudogene	22.02120	22.02163	positive	MGI_C57BL6J_5663808	Gm43671	ENSEMBL:ENSMUSG00000106527	MGI:5663808	pseudogene	predicted gene 43671

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	22.07659	22.21659	positive	MGI_C57BL6J_2441730	Tbl1xr1	NCBI_Gene:81004,ENSEMBL:ENSMUSG00000027630	MGI:2441730	protein coding gene	transducin (beta)-like 1X-linked receptor 1
3	gene	22.25137	22.25166	positive	MGI_C57BL6J_105104	Rprl2	NCBI_Gene:19784,ENSEMBL:ENSMUSG00000087775	MGI:105104	RNase P RNA gene	ribonuclease P RNA-like 2
3	gene	22.28508	22.29783	negative	MGI_C57BL6J_5611552	Gm38324	ENSEMBL:ENSMUSG00000102987	MGI:5611552	lncRNA gene	predicted gene, 38324
3	pseudogene	22.34885	22.34961	negative	MGI_C57BL6J_5610864	Gm37636	NCBI_Gene:108168850,ENSEMBL:ENSMUSG00000102866	MGI:5610864	pseudogene	predicted gene, 37636
3	gene	22.40992	22.41005	negative	MGI_C57BL6J_5456131	Gm26354	ENSEMBL:ENSMUSG00000088846	MGI:5456131	snoRNA gene	predicted gene, 26354
3	pseudogene	22.52501	22.52624	positive	MGI_C57BL6J_3780056	Spin3-ps	NCBI_Gene:675593,ENSEMBL:ENSMUSG00000103801	MGI:3780056	pseudogene	spindlin family, member 3, pseudogene
3	gene	22.81221	22.81246	positive	MGI_C57BL6J_5611117	Gm37889	ENSEMBL:ENSMUSG00000102233	MGI:5611117	unclassified gene	predicted gene, 37889
3	pseudogene	23.07242	23.07492	positive	MGI_C57BL6J_5610211	Gm36983	ENSEMBL:ENSMUSG00000103275	MGI:5610211	pseudogene	predicted gene, 36983
3	gene	23.08598	23.08895	positive	MGI_C57BL6J_5610249	Gm37021	ENSEMBL:ENSMUSG00000103607	MGI:5610249	lncRNA gene	predicted gene, 37021
3	pseudogene	23.37494	23.37532	negative	MGI_C57BL6J_5610720	Gm37492	ENSEMBL:ENSMUSG00000102214	MGI:5610720	pseudogene	predicted gene, 37492
3	gene	23.46105	23.52140	positive	MGI_C57BL6J_1924114	4930412E21Rik	NCBI_Gene:100039548,ENSEMBL:ENSMUSG00000102203	MGI:1924114	lncRNA gene	RIKEN cDNA 4930412E21 gene
3	gene	23.79810	25.14426	negative	MGI_C57BL6J_2685867	Naaladl2	NCBI_Gene:635702,ENSEMBL:ENSMUSG00000102758	MGI:2685867	protein coding gene	N-acetylated alpha-linked acidic dipeptidase-like 2
3	pseudogene	23.93096	23.93200	positive	MGI_C57BL6J_5011009	Gm18824	NCBI_Gene:100417784	MGI:5011009	pseudogene	predicted gene, 18824
3	gene	23.94002	23.94593	positive	MGI_C57BL6J_5625076	Gm42191	NCBI_Gene:105247007	MGI:5625076	lncRNA gene	predicted gene, 42191
3	gene	24.16303	24.16311	negative	MGI_C57BL6J_4413931	n-TLcag1	NCBI_Gene:102467553	MGI:4413931	tRNA gene	nuclear encoded tRNA leucine 1 (anticodon CAG)
3	pseudogene	24.33304	24.33355	positive	MGI_C57BL6J_3645137	Gm7536	NCBI_Gene:665189,ENSEMBL:ENSMUSG00000057036	MGI:3645137	pseudogene	predicted gene 7536
3	gene	24.48671	24.48749	positive	MGI_C57BL6J_1920306	2900080J11Rik	NA	NA	unclassified gene	RIKEN cDNA 2900080J11 gene
3	gene	24.56207	24.56218	positive	MGI_C57BL6J_5454481	Gm24704	ENSEMBL:ENSMUSG00000070227	MGI:5454481	snRNA gene	predicted gene, 24704
3	gene	24.71872	24.71898	positive	MGI_C57BL6J_5453839	Gm24062	ENSEMBL:ENSMUSG00000088115	MGI:5453839	unclassified non-coding RNA gene	predicted gene, 24062
3	pseudogene	25.00742	25.00771	negative	MGI_C57BL6J_5662911	Gm42774	ENSEMBL:ENSMUSG00000105009	MGI:5662911	pseudogene	predicted gene 42774
3	gene	25.14407	25.14426	positive	MGI_C57BL6J_5610364	Gm37136	ENSEMBL:ENSMUSG00000102876	MGI:5610364	unclassified gene	predicted gene, 37136
3	pseudogene	25.18480	25.18498	negative	MGI_C57BL6J_5611230	Gm38002	ENSEMBL:ENSMUSG00000102855	MGI:5611230	pseudogene	predicted gene, 38002
3	pseudogene	25.21076	25.21273	negative	MGI_C57BL6J_3704211	Gm10259	NCBI_Gene:100039592,ENSEMBL:ENSMUSG00000069083	MGI:3704211	pseudogene	predicted pseudogene 10259

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	25.42621	26.33286	negative	MGI_C57BL6J_2179435	Nlgn1	NCBI_Gene:192167,ENSEMBL:ENSMUSG00000063887	MGI:2179435	protein coding gene	neuroligin 1
3	gene	25.54602	25.54615	positive	MGI_C57BL6J_5454027	Gm24250	ENSEMBL:ENSMUSG00000087945	MGI:5454027	rRNA gene	predicted gene, 24250
3	gene	25.64956	25.65077	negative	MGI_C57BL6J_1920377	3110039C02Rik	NA	NA	unclassified gene	RIKEN cDNA 3110039C02 gene
3	gene	25.69519	25.70030	negative	MGI_C57BL6J_5610801	Gm37573	ENSEMBL:ENSMUSG00000102397	MGI:5610801	lncRNA gene	predicted gene, 37573
3	pseudogene	25.73123	25.73261	positive	MGI_C57BL6J_3647151	Gm6197	NCBI_Gene:621017,ENSEMBL:ENSMUSG00000104295	MGI:3647151	pseudogene	predicted gene 6197
3	gene	25.86566	25.86752	negative	MGI_C57BL6J_2443798	A830010M09Rik	NA	NA	unclassified gene	RIKEN cDNA A830010M09 gene
3	gene	26.33115	26.33688	positive	MGI_C57BL6J_3698881	A830092H15Rik	NCBI_Gene:100379095,ENSEMBL:ENSMUSG00000074664	MGI:3698881	lncRNA gene	RIKEN cDNA A830092H15 gene
3	pseudogene	26.38044	26.38256	positive	MGI_C57BL6J_3648363	Gm4855	NCBI_Gene:229152,ENSEMBL:ENSMUSG00000102274	MGI:3648363	pseudogene	predicted gene 4855
3	gene	26.62618	26.62631	negative	MGI_C57BL6J_5455550	Gm25773	ENSEMBL:ENSMUSG00000080368	MGI:5455550	miRNA gene	predicted gene, 25773
3	gene	26.63762	26.98321	positive	MGI_C57BL6J_1918112	Spata16	NCBI_Gene:70862,ENSEMBL:ENSMUSG00000039335	MGI:1918112	protein coding gene	spermatogenesis associated 16
3	gene	26.85020	26.87914	negative	MGI_C57BL6J_5591617	Gm32458	NCBI_Gene:102635017	MGI:5591617	lncRNA gene	predicted gene, 32458
3	pseudogene	27.01276	27.01287	positive	MGI_C57BL6J_5610887	Gm37659	ENSEMBL:ENSMUSG00000103712	MGI:5610887	pseudogene	predicted gene, 37659
3	gene	27.02642	27.02655	negative	MGI_C57BL6J_5690856	Gm44464	ENSEMBL:ENSMUSG00000105670	MGI:5690856	miRNA gene	predicted gene, 44464
3	pseudogene	27.04674	27.04798	negative	MGI_C57BL6J_3645515	Gm7558	NCBI_Gene:665258,ENSEMBL:ENSMUSG00000102908	MGI:3645515	pseudogene	predicted gene 7558
3	gene	27.09722	27.15391	negative	MGI_C57BL6J_95281	Ect2	NCBI_Gene:13605,ENSEMBL:ENSMUSG00000027699	MGI:95281	protein coding gene	ect2 oncogene
3	gene	27.10898	27.10909	positive	MGI_C57BL6J_5454929	Gm25152	ENSEMBL:ENSMUSG00000087742	MGI:5454929	snoRNA gene	predicted gene, 25152
3	gene	27.15403	27.15702	positive	MGI_C57BL6J_1923907	1700125G22Rik	NCBI_Gene:76657,ENSEMBL:ENSMUSG00000097584	MGI:1923907	lncRNA gene	RIKEN cDNA 1700125G22 gene
3	gene	27.18296	27.28461	positive	MGI_C57BL6J_2443191	Nceh1	NCBI_Gene:320024,ENSEMBL:ENSMUSG00000027698	MGI:2443191	protein coding gene	neutral cholesterol ester hydrolase 1
3	gene	27.26033	27.28446	positive	MGI_C57BL6J_5625077	Gm42192	NCBI_Gene:105247008	MGI:5625077	lncRNA gene	predicted gene, 42192
3	pseudogene	27.27806	27.27845	positive	MGI_C57BL6J_5610419	Gm37191	ENSEMBL:ENSMUSG00000102186	MGI:5610419	pseudogene	predicted gene, 37191
3	pseudogene	27.30841	27.30867	negative	MGI_C57BL6J_5663482	Gm43345	ENSEMBL:ENSMUSG00000105806	MGI:5663482	pseudogene	predicted gene 43345
3	gene	27.31703	27.34243	positive	MGI_C57BL6J_107414	Tnfsf10	NCBI_Gene:22035,ENSEMBL:ENSMUSG00000039304	MGI:107414	protein coding gene	tumor necrosis factor (ligand) superfamily, member 10
3	gene	27.37131	27.37923	positive	MGI_C57BL6J_2441906	Ghsr	NCBI_Gene:208188,ENSEMBL:ENSMUSG00000051136	MGI:2441906	protein coding gene	growth hormone secretagogue receptor
3	gene	27.41511	27.41615	negative	MGI_C57BL6J_1924904	C430049A07Rik	NA	NA	unclassified gene	RIKEN cDNA C430049A07 gene
3	gene	27.41616	27.71311	negative	MGI_C57BL6J_1919257	Fndc3b	NCBI_Gene:72007,ENSEMBL:ENSMUSG00000039286	MGI:1919257	protein coding gene	fibronectin type III domain containing 3B
3	gene	27.44166	27.44411	positive	MGI_C57BL6J_5625078	Gm42193	NCBI_Gene:105247009	MGI:5625078	lncRNA gene	predicted gene, 42193
3	gene	27.48228	27.48424	positive	MGI_C57BL6J_5591897	Gm32738	NCBI_Gene:102635381	MGI:5591897	lncRNA gene	predicted gene, 32738
3	gene	27.54664	27.54787	positive	MGI_C57BL6J_5663481	Gm43344	ENSEMBL:ENSMUSG00000106625	MGI:5663481	unclassified gene	predicted gene 43344

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	27.41616	27.71311	negative	MGI_C57BL6J_1919257	Fndc3b	NCBI_Gene:72007,ENSEMBL:ENSMUSG00000039286	MGI:1919257	protein coding gene	fibronectin type III domain containing 3B
3	gene	27.58490	27.58499	negative	MGI_C57BL6J_4834306	Mir3092	miRBase:MI0014085,NCBI_Gene:100526525,ENSEMBL:ENSMUSG00000092695	MGI:4834306	miRNA gene	microRNA 3092
3	gene	27.77786	27.84092	positive	MGI_C57BL6J_5625079	Gm42194	NCBI_Gene:105247010	MGI:5625079	lncRNA gene	predicted gene, 42194
3	gene	27.79788	27.81538	negative	MGI_C57BL6J_5591954	Gm32795	NCBI_Gene:102635463	MGI:5591954	lncRNA gene	predicted gene, 32795
3	gene	27.86606	27.89639	negative	MGI_C57BL6J_2685410	Tmem212	NCBI_Gene:208613,ENSEMBL:ENSMUSG00000043164	MGI:2685410	protein coding gene	transmembrane protein 212
3	gene	27.86811	27.86827	positive	MGI_C57BL6J_5455817	Gm26040	ENSEMBL:ENSMUSG00000088772	MGI:5455817	snoRNA gene	predicted gene, 26040
3	gene	27.89680	27.90023	negative	MGI_C57BL6J_5625080	Gm42195	NCBI_Gene:105247011	MGI:5625080	lncRNA gene	predicted gene, 42195
3	gene	27.93841	28.13336	positive	MGI_C57BL6J_109585	Pld1	NCBI_Gene:18805,ENSEMBL:ENSMUSG00000027695	MGI:109585	protein coding gene	phospholipase D1
3	gene	28.17651	28.21221	positive	MGI_C57BL6J_5625081	Gm42196	NCBI_Gene:105247012,ENSEMBL:ENSMUSG00000109716	MGI:5625081	lncRNA gene	predicted gene, 42196
3	pseudogene	28.24552	28.24577	positive	MGI_C57BL6J_5610326	Gm37098	ENSEMBL:ENSMUSG00000103729	MGI:5610326	pseudogene	predicted gene, 37098
3	gene	28.26321	28.67586	positive	MGI_C57BL6J_1916264	Tnik	NCBI_Gene:665113,ENSEMBL:ENSMUSG00000027692	MGI:1916264	protein coding gene	TRAF2 and NCK interacting kinase
3	gene	28.26928	28.26983	positive	MGI_C57BL6J_2139599	AA589472	NA	NA	unclassified gene	expressed sequence AA589472
3	gene	28.32436	28.32609	positive	MGI_C57BL6J_5610765	Gm37537	ENSEMBL:ENSMUSG00000103420	MGI:5610765	unclassified gene	predicted gene, 37537

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	28.26321	28.67586	positive	MGI_C57BL6J_1916264	Tnik	NCBI_Gene:665113,ENSEMBL:ENSMUSG00000027692	MGI:1916264	protein coding gene	TRAF2 and NCK interacting kinase
3	gene	28.69790	28.73136	positive	MGI_C57BL6J_1095438	Slc2a2	NCBI_Gene:20526,ENSEMBL:ENSMUSG00000027690	MGI:1095438	protein coding gene	solute carrier family 2 (facilitated glucose transporter), member 2
3	gene	28.70267	28.78111	negative	MGI_C57BL6J_1920861	1700112D23Rik	NCBI_Gene:73611,ENSEMBL:ENSMUSG00000091329	MGI:1920861	lncRNA gene	RIKEN cDNA 1700112D23 gene
3	pseudogene	28.76353	28.76539	negative	MGI_C57BL6J_3648080	Gm6505	NCBI_Gene:624446,ENSEMBL:ENSMUSG00000070522	MGI:3648080	pseudogene	predicted pseudogene 6505
3	gene	28.78127	28.79885	positive	MGI_C57BL6J_1933735	Eif5a2	NCBI_Gene:208691,ENSEMBL:ENSMUSG00000050192	MGI:1933735	protein coding gene	eukaryotic translation initiation factor 5A2
3	gene	28.79064	28.80542	negative	MGI_C57BL6J_5592109	Gm32950	NCBI_Gene:102635671,ENSEMBL:ENSMUSG00000103827	MGI:5592109	lncRNA gene	predicted gene, 32950
3	gene	28.80544	28.80742	positive	MGI_C57BL6J_1915278	Rpl22l1	NCBI_Gene:68028,ENSEMBL:ENSMUSG00000039221	MGI:1915278	protein coding gene	ribosomal protein L22 like 1
3	gene	28.80720	28.81618	negative	MGI_C57BL6J_5592210	Gm33051	NCBI_Gene:102635804,ENSEMBL:ENSMUSG00000104444	MGI:5592210	lncRNA gene	predicted gene, 33051
3	gene	28.85203	28.85426	negative	MGI_C57BL6J_5611095	Gm37867	ENSEMBL:ENSMUSG00000104275	MGI:5611095	lncRNA gene	predicted gene, 37867
3	gene	28.87981	28.88346	positive	MGI_C57BL6J_5611152	Gm37924	ENSEMBL:ENSMUSG00000102482	MGI:5611152	unclassified gene	predicted gene, 37924
3	gene	28.88346	28.89728	negative	MGI_C57BL6J_5592261	Gm33102	NCBI_Gene:102635876	MGI:5592261	lncRNA gene	predicted gene, 33102
3	gene	28.89262	28.92672	positive	MGI_C57BL6J_2686373	Gm1527	NCBI_Gene:385263,ENSEMBL:ENSMUSG00000074655	MGI:2686373	protein coding gene	predicted gene 1527
3	gene	29.04377	29.04555	negative	MGI_C57BL6J_5592313	Gm33154	NCBI_Gene:102635945	MGI:5592313	lncRNA gene	predicted gene, 33154
3	gene	29.08072	29.69121	positive	MGI_C57BL6J_1922990	Egfem1	NCBI_Gene:75740,ENSEMBL:ENSMUSG00000063600	MGI:1922990	protein coding gene	EGF-like and EMI domain containing 1
3	gene	29.17484	29.17693	positive	MGI_C57BL6J_5611257	Gm38029	ENSEMBL:ENSMUSG00000103992	MGI:5611257	unclassified gene	predicted gene, 38029
3	gene	29.20934	29.21198	positive	MGI_C57BL6J_2442122	D230021J17Rik	NA	NA	unclassified gene	RIKEN cDNA D230021J17 gene
3	gene	29.21989	29.22125	positive	MGI_C57BL6J_5611193	Gm37965	ENSEMBL:ENSMUSG00000102579	MGI:5611193	unclassified gene	predicted gene, 37965
3	gene	29.26628	29.26684	negative	MGI_C57BL6J_2139582	AA516838	NA	NA	unclassified gene	expressed sequence AA516838
3	gene	29.41682	29.41692	positive	MGI_C57BL6J_3691605	Mir551b	miRBase:MI0004131,NCBI_Gene:791072,ENSEMBL:ENSMUSG00000076120	MGI:3691605	miRNA gene	microRNA 551b
3	gene	29.63674	29.63685	positive	MGI_C57BL6J_5531333	Mir21b	miRBase:MI0021906,NCBI_Gene:102466637,ENSEMBL:ENSMUSG00000098315	MGI:5531333	miRNA gene	microRNA 21b
3	gene	29.66251	29.69656	negative	MGI_C57BL6J_5625082	Gm42197	NCBI_Gene:105247013	MGI:5625082	lncRNA gene	predicted gene, 42197
3	gene	29.76404	29.89323	negative	MGI_C57BL6J_5592365	Gm33206	NCBI_Gene:102636014,ENSEMBL:ENSMUSG00000102574	MGI:5592365	lncRNA gene	predicted gene, 33206
3	pseudogene	29.77128	29.77142	positive	MGI_C57BL6J_5610785	Gm37557	ENSEMBL:ENSMUSG00000103095	MGI:5610785	pseudogene	predicted gene, 37557
3	gene	29.89101	29.92419	positive	MGI_C57BL6J_5564803	Mannr	NCBI_Gene:102636083,ENSEMBL:ENSMUSG00000102590	MGI:5564803	lncRNA gene	Mecom adjacent non-protein coding RNA
3	pseudogene	29.92654	29.92697	positive	MGI_C57BL6J_5610509	Gm37281	ENSEMBL:ENSMUSG00000102884	MGI:5610509	pseudogene	predicted gene, 37281
3	gene	29.95130	30.54801	negative	MGI_C57BL6J_95457	Mecom	NCBI_Gene:14013,ENSEMBL:ENSMUSG00000027684	MGI:95457	protein coding gene	MDS1 and EVI1 complex locus
3	gene	30.01238	30.05481	positive	MGI_C57BL6J_4439646	Mecomos	ENSEMBL:ENSMUSG00000085702	MGI:4439646	antisense lncRNA gene	MDS1 and EVI1 complex locus, opposite strand
3	gene	30.16025	30.16189	negative	MGI_C57BL6J_5611294	Gm38066	ENSEMBL:ENSMUSG00000104486	MGI:5611294	unclassified gene	predicted gene, 38066

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	29.95130	30.54801	negative	MGI_C57BL6J_95457	Mecom	NCBI_Gene:14013,ENSEMBL:ENSMUSG00000027684	MGI:95457	protein coding gene	MDS1 and EVI1 complex locus
3	gene	30.22557	30.22769	negative	MGI_C57BL6J_5611425	Gm38197	ENSEMBL:ENSMUSG00000102460	MGI:5611425	unclassified gene	predicted gene, 38197
3	gene	30.26684	30.28019	negative	MGI_C57BL6J_3648282	Gm10258	NCBI_Gene:545510,ENSEMBL:ENSMUSG00000069074	MGI:3648282	unclassified non-coding RNA gene	predicted gene 10258
3	gene	30.27232	30.27438	negative	MGI_C57BL6J_5611590	Gm38362	ENSEMBL:ENSMUSG00000103870	MGI:5611590	unclassified gene	predicted gene, 38362
3	gene	30.34998	30.35132	negative	MGI_C57BL6J_1924752	9530010C24Rik	NA	NA	unclassified gene	RIKEN cDNA 9530010C24 gene
3	gene	30.48843	30.48929	positive	MGI_C57BL6J_5610252	Gm37024	ENSEMBL:ENSMUSG00000104079	MGI:5610252	unclassified gene	predicted gene, 37024
3	gene	30.50172	30.50381	negative	MGI_C57BL6J_5610880	Gm37652	ENSEMBL:ENSMUSG00000103738	MGI:5610880	unclassified gene	predicted gene, 37652
3	gene	30.55270	30.56424	negative	MGI_C57BL6J_5611486	Gm38258	ENSEMBL:ENSMUSG00000102256	MGI:5611486	lncRNA gene	predicted gene, 38258
3	pseudogene	30.56166	30.56213	negative	MGI_C57BL6J_5611381	Gm38153	ENSEMBL:ENSMUSG00000104243	MGI:5611381	pseudogene	predicted gene, 38153
3	gene	30.59484	30.59576	negative	MGI_C57BL6J_1920499	1600017P15Rik	ENSEMBL:ENSMUSG00000102505,ENSEMBL:ENSMUSG00000065361	MGI:1920499	unclassified gene	RIKEN cDNA 1600017P15 gene
3	gene	30.59707	30.59994	negative	MGI_C57BL6J_1923902	Actrt3	NCBI_Gene:76652,ENSEMBL:ENSMUSG00000037737	MGI:1923902	protein coding gene	actin related protein T3
3	gene	30.60127	30.60134	positive	MGI_C57BL6J_4414091	n-TVaac8	NCBI_Gene:102467402	MGI:4414091	tRNA gene	nuclear encoded tRNA valine 8 (anticodon AAC)
3	gene	30.60206	30.61987	positive	MGI_C57BL6J_1931415	Mynn	NCBI_Gene:80732,ENSEMBL:ENSMUSG00000037730	MGI:1931415	protein coding gene	myoneurin
3	gene	30.62427	30.64787	negative	MGI_C57BL6J_1919077	Lrrc34	NCBI_Gene:71827,ENSEMBL:ENSMUSG00000027702	MGI:1919077	protein coding gene	leucine rich repeat containing 34
3	gene	30.64451	30.67243	positive	MGI_C57BL6J_1915557	Lrriq4	NCBI_Gene:68307,ENSEMBL:ENSMUSG00000027703	MGI:1915557	protein coding gene	leucine-rich repeats and IQ motif containing 4
3	gene	30.67855	30.69984	negative	MGI_C57BL6J_2443864	Lrrc31	NCBI_Gene:320352,ENSEMBL:ENSMUSG00000074653	MGI:2443864	protein coding gene	leucine rich repeat containing 31
3	gene	30.68594	30.69301	positive	MGI_C57BL6J_3705271	Gm15462	NCBI_Gene:108168861,ENSEMBL:ENSMUSG00000086189	MGI:3705271	lncRNA gene	predicted gene 15462
3	gene	30.74629	30.76717	positive	MGI_C57BL6J_1923203	Samd7	NCBI_Gene:75953,ENSEMBL:ENSMUSG00000051860	MGI:1923203	protein coding gene	sterile alpha motif domain containing 7
3	gene	30.75231	30.75665	negative	MGI_C57BL6J_5592749	Gm33590	NCBI_Gene:102636556	MGI:5592749	lncRNA gene	predicted gene, 33590
3	gene	30.79257	30.79356	negative	MGI_C57BL6J_1918530	4933429H19Rik	ENSEMBL:ENSMUSG00000097786	MGI:1918530	lncRNA gene	RIKEN cDNA 4933429H19 gene
3	gene	30.79276	30.82126	positive	MGI_C57BL6J_1916526	Sec62	NCBI_Gene:69276,ENSEMBL:ENSMUSG00000027706	MGI:1916526	protein coding gene	SEC62 homolog (S. cerevisiae)
3	pseudogene	30.82857	30.82883	negative	MGI_C57BL6J_5611308	Gm38080	ENSEMBL:ENSMUSG00000104361	MGI:5611308	pseudogene	predicted gene, 38080
3	gene	30.84154	30.85199	negative	MGI_C57BL6J_5625083	Gm42198	NCBI_Gene:105247015	MGI:5625083	lncRNA gene	predicted gene, 42198
3	gene	30.85248	30.85586	negative	MGI_C57BL6J_5625084	Gm42199	NCBI_Gene:105247016	MGI:5625084	lncRNA gene	predicted gene, 42199
3	gene	30.85587	30.89719	positive	MGI_C57BL6J_1919112	Gpr160	NCBI_Gene:71862,ENSEMBL:ENSMUSG00000037661	MGI:1919112	protein coding gene	G protein-coupled receptor 160
3	gene	30.89929	30.96948	negative	MGI_C57BL6J_2181434	Phc3	NCBI_Gene:241915,ENSEMBL:ENSMUSG00000037652	MGI:2181434	protein coding gene	polyhomeotic 3
3	gene	30.95733	30.95764	negative	MGI_C57BL6J_1924590	9530022L04Rik	ENSEMBL:ENSMUSG00000102369	MGI:1924590	unclassified gene	RIKEN cDNA 9530022L04 gene
3	pseudogene	30.97291	30.97511	positive	MGI_C57BL6J_3781157	Gm2979	NCBI_Gene:100040809,ENSEMBL:ENSMUSG00000102741	MGI:3781157	pseudogene	predicted gene 2979
3	gene	30.99574	31.05296	positive	MGI_C57BL6J_99260	Prkci	NCBI_Gene:18759,ENSEMBL:ENSMUSG00000037643	MGI:99260	protein coding gene	protein kinase C, iota
3	gene	31.03897	31.03903	positive	MGI_C57BL6J_5531134	Mir7008	miRBase:MI0022857,NCBI_Gene:102465610,ENSEMBL:ENSMUSG00000098890	MGI:5531134	miRNA gene	microRNA 7008
3	gene	31.06130	31.06669	positive	MGI_C57BL6J_5592800	Gm33641	NCBI_Gene:102636630	MGI:5592800	lncRNA gene	predicted gene, 33641
3	gene	31.06243	31.07994	negative	MGI_C57BL6J_5592853	Gm33694	NCBI_Gene:102636694	MGI:5592853	lncRNA gene	predicted gene, 33694

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	pseudogene	31.64480	31.69058	negative	MGI_C57BL6J_3779607	Gm6558	NCBI_Gene:625125,ENSEMBL:ENSMUSG00000103499	MGI:3779607	pseudogene	predicted gene 6558
3	gene	31.68642	31.69214	positive	MGI_C57BL6J_5593045	Gm33886	NCBI_Gene:102636961	MGI:5593045	lncRNA gene	predicted gene, 33886
3	gene	31.89883	31.90212	negative	MGI_C57BL6J_5593190	Gm34031	NCBI_Gene:102637147	MGI:5593190	lncRNA gene	predicted gene, 34031
3	gene	31.90213	32.20018	positive	MGI_C57BL6J_1919663	Kcnmb2	NCBI_Gene:72413,ENSEMBL:ENSMUSG00000037610	MGI:1919663	protein coding gene	potassium large conductance calcium-activated channel, subfamily M, beta member 2
3	gene	31.95476	31.95780	positive	MGI_C57BL6J_5611062	Gm37834	ENSEMBL:ENSMUSG00000103539	MGI:5611062	unclassified gene	predicted gene, 37834
3	gene	32.23753	32.32631	negative	MGI_C57BL6J_5625086	Gm42201	NCBI_Gene:105247019	MGI:5625086	lncRNA gene	predicted gene, 42201
3	pseudogene	32.26033	32.26111	positive	MGI_C57BL6J_5610998	Gm37770	NCBI_Gene:108168862,ENSEMBL:ENSMUSG00000103643	MGI:5610998	pseudogene	predicted gene, 37770
3	gene	32.33479	32.36601	negative	MGI_C57BL6J_1195270	Zmat3	NCBI_Gene:22401,ENSEMBL:ENSMUSG00000027663	MGI:1195270	protein coding gene	zinc finger matrin type 3
3	gene	32.36549	32.36744	positive	MGI_C57BL6J_1914826	4930429B21Rik	NCBI_Gene:67576	MGI:1914826	lncRNA gene	RIKEN cDNA 4930429B21 gene
3	gene	32.37158	32.37299	negative	MGI_C57BL6J_5610218	Gm36990	ENSEMBL:ENSMUSG00000102825	MGI:5610218	unclassified gene	predicted gene, 36990
3	gene	32.37898	32.38470	negative	MGI_C57BL6J_5625087	Gm42202	NCBI_Gene:105247020	MGI:5625087	lncRNA gene	predicted gene, 42202
3	gene	32.39707	32.46849	positive	MGI_C57BL6J_1206581	Pik3ca	NCBI_Gene:18706,ENSEMBL:ENSMUSG00000027665	MGI:1206581	protein coding gene	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
3	gene	32.45459	32.45576	positive	MGI_C57BL6J_5610351	Gm37123	ENSEMBL:ENSMUSG00000103039	MGI:5610351	unclassified gene	predicted gene, 37123
3	gene	32.46778	32.50290	negative	MGI_C57BL6J_3612244	Kcnmb3	NCBI_Gene:100502876,ENSEMBL:ENSMUSG00000091091	MGI:3612244	protein coding gene	potassium large conductance calcium-activated channel, subfamily M, beta member 3
3	gene	32.51026	32.52083	positive	MGI_C57BL6J_1915028	Zfp639	NCBI_Gene:67778,ENSEMBL:ENSMUSG00000027667	MGI:1915028	protein coding gene	zinc finger protein 639
3	gene	32.51180	32.51234	negative	MGI_C57BL6J_5610820	Gm37592	ENSEMBL:ENSMUSG00000104231	MGI:5610820	lncRNA gene	predicted gene, 37592
3	gene	32.52946	32.57924	positive	MGI_C57BL6J_1914664	Mfn1	NCBI_Gene:67414,ENSEMBL:ENSMUSG00000027668	MGI:1914664	protein coding gene	mitofusin 1
3	gene	32.58033	32.61659	negative	MGI_C57BL6J_104581	Gnb4	NCBI_Gene:14696,ENSEMBL:ENSMUSG00000027669	MGI:104581	protein coding gene	guanine nucleotide binding protein (G protein), beta 4
3	gene	32.61086	32.61351	positive	MGI_C57BL6J_5610868	Gm37640	ENSEMBL:ENSMUSG00000102862	MGI:5610868	lncRNA gene	predicted gene, 37640
3	gene	32.70630	32.72697	positive	MGI_C57BL6J_1861453	Actl6a	NCBI_Gene:56456,ENSEMBL:ENSMUSG00000027671	MGI:1861453	protein coding gene	actin-like 6A
3	gene	32.72178	32.72209	negative	MGI_C57BL6J_5610581	Gm37353	ENSEMBL:ENSMUSG00000103590	MGI:5610581	unclassified gene	predicted gene, 37353
3	gene	32.72540	32.73761	negative	MGI_C57BL6J_1921850	Mrpl47	NCBI_Gene:74600,ENSEMBL:ENSMUSG00000037531	MGI:1921850	protein coding gene	mitochondrial ribosomal protein L47
3	gene	32.73610	32.73761	negative	MGI_C57BL6J_3704212	Gm9859	NA	NA	unclassified gene	predicted gene 9859
3	gene	32.73699	32.75157	positive	MGI_C57BL6J_1913296	Ndufb5	NCBI_Gene:66046,ENSEMBL:ENSMUSG00000027673	MGI:1913296	protein coding gene	NADH:ubiquinone oxidoreductase subunit B5
3	gene	32.81702	32.93807	positive	MGI_C57BL6J_1919857	Usp13	NCBI_Gene:72607,ENSEMBL:ENSMUSG00000056900	MGI:1919857	protein coding gene	ubiquitin specific peptidase 13 (isopeptidase T-3)
3	pseudogene	32.88001	32.88061	negative	MGI_C57BL6J_3783022	Gm15574	ENSEMBL:ENSMUSG00000081883	MGI:3783022	pseudogene	predicted gene 15574
3	gene	32.93931	32.98330	positive	MGI_C57BL6J_5610687	Gm37459	ENSEMBL:ENSMUSG00000104283	MGI:5610687	lncRNA gene	predicted gene, 37459
3	gene	32.94793	33.14327	negative	MGI_C57BL6J_1916672	Pex5l	NCBI_Gene:58869,ENSEMBL:ENSMUSG00000027674	MGI:1916672	protein coding gene	peroxisomal biogenesis factor 5-like
3	gene	33.01196	33.01211	positive	MGI_C57BL6J_5452991	Gm23214	ENSEMBL:ENSMUSG00000084665	MGI:5452991	snRNA gene	predicted gene, 23214
3	gene	33.02478	33.08861	positive	MGI_C57BL6J_1921124	4930419G24Rik	NCBI_Gene:73874,ENSEMBL:ENSMUSG00000087625	MGI:1921124	lncRNA gene	RIKEN cDNA 4930419G24 gene
3	gene	33.03423	33.03705	negative	MGI_C57BL6J_5610671	Gm37443	ENSEMBL:ENSMUSG00000102581	MGI:5610671	unclassified gene	predicted gene, 37443
3	gene	33.07392	33.07636	negative	MGI_C57BL6J_5011630	Gm19445	ENSEMBL:ENSMUSG00000102498	MGI:5011630	unclassified gene	predicted gene, 19445
3	pseudogene	33.19080	33.19104	positive	MGI_C57BL6J_5610356	Gm37128	ENSEMBL:ENSMUSG00000103896	MGI:5610356	pseudogene	predicted gene, 37128
3	gene	33.26072	33.26082	negative	MGI_C57BL6J_5531356	Gm27974	ENSEMBL:ENSMUSG00000098622	MGI:5531356	miRNA gene	predicted gene, 27974
3	gene	33.28312	33.28565	positive	MGI_C57BL6J_5610259	Gm37031	ENSEMBL:ENSMUSG00000104384	MGI:5610259	unclassified gene	predicted gene, 37031
3	gene	33.39306	33.39320	negative	MGI_C57BL6J_5454557	Gm24780	ENSEMBL:ENSMUSG00000088260	MGI:5454557	snoRNA gene	predicted gene, 24780
3	gene	33.39338	33.39485	negative	MGI_C57BL6J_5610626	Gm37398	ENSEMBL:ENSMUSG00000104203	MGI:5610626	unclassified gene	predicted gene, 37398
3	gene	33.54027	33.54342	positive	MGI_C57BL6J_5593364	Gm34205	NCBI_Gene:102637377	MGI:5593364	lncRNA gene	predicted gene, 34205
3	pseudogene	33.62159	33.62245	positive	MGI_C57BL6J_3649050	Gm5845	NCBI_Gene:545512,ENSEMBL:ENSMUSG00000103423	MGI:3649050	pseudogene	predicted gene 5845
3	pseudogene	33.68451	33.68487	negative	MGI_C57BL6J_5662831	Gm42694	ENSEMBL:ENSMUSG00000104954	MGI:5662831	pseudogene	predicted gene 42694
3	gene	33.68696	33.69200	negative	MGI_C57BL6J_5625088	Gm42203	NCBI_Gene:105247021	MGI:5625088	lncRNA gene	predicted gene, 42203
3	gene	33.70336	33.75962	negative	MGI_C57BL6J_5663803	Gm43666	ENSEMBL:ENSMUSG00000104588	MGI:5663803	lncRNA gene	predicted gene 43666
3	pseudogene	33.73060	33.73353	positive	MGI_C57BL6J_5010796	Gm18611	NCBI_Gene:100417436,ENSEMBL:ENSMUSG00000106231	MGI:5010796	pseudogene	predicted gene, 18611
3	gene	33.79983	33.81486	positive	MGI_C57BL6J_1914370	Ttc14	NCBI_Gene:67120,ENSEMBL:ENSMUSG00000027677	MGI:1914370	protein coding gene	tetratricopeptide repeat domain 14
3	gene	33.81076	33.84432	negative	MGI_C57BL6J_1289263	Ccdc39	NCBI_Gene:51938,ENSEMBL:ENSMUSG00000027676	MGI:1289263	protein coding gene	coiled-coil domain containing 39
3	gene	33.81726	33.81795	positive	MGI_C57BL6J_5663277	Gm43140	ENSEMBL:ENSMUSG00000105286	MGI:5663277	lncRNA gene	predicted gene 43140
3	gene	33.86681	33.89758	negative	MGI_C57BL6J_1921204	4930431L21Rik	ENSEMBL:ENSMUSG00000105475	MGI:1921204	lncRNA gene	RIKEN cDNA 4930431L21 gene
3	gene	33.90684	33.90823	positive	MGI_C57BL6J_5625089	Gm42204	NCBI_Gene:105247022	MGI:5625089	lncRNA gene	predicted gene, 42204
3	gene	33.95620	33.95715	positive	MGI_C57BL6J_1922225	4930502C17Rik	ENSEMBL:ENSMUSG00000106584	MGI:1922225	unclassified gene	RIKEN cDNA 4930502C17 gene
3	gene	33.95907	33.95920	negative	MGI_C57BL6J_5452952	Gm23175	ENSEMBL:ENSMUSG00000077559	MGI:5452952	snoRNA gene	predicted gene, 23175
3	gene	33.97218	33.97545	negative	MGI_C57BL6J_5826470	Gm46833	NCBI_Gene:108168913	MGI:5826470	lncRNA gene	predicted gene, 46833
3	pseudogene	34.00477	34.00551	negative	MGI_C57BL6J_3642317	Gm9791	NCBI_Gene:100040232,ENSEMBL:ENSMUSG00000044434	MGI:3642317	pseudogene	predicted pseudogene 9791
3	gene	34.00880	34.01188	negative	MGI_C57BL6J_5826435	Gm46798	NCBI_Gene:108168863	MGI:5826435	lncRNA gene	predicted gene, 46798
3	gene	34.01771	34.01988	negative	MGI_C57BL6J_5663214	Gm43077	ENSEMBL:ENSMUSG00000105535	MGI:5663214	lncRNA gene	predicted gene 43077
3	gene	34.01994	34.07032	positive	MGI_C57BL6J_104860	Fxr1	NCBI_Gene:14359,ENSEMBL:ENSMUSG00000027680	MGI:104860	protein coding gene	fragile X mental retardation gene 1, autosomal homolog
3	gene	34.05434	34.05543	negative	MGI_C57BL6J_5663804	Gm43667	ENSEMBL:ENSMUSG00000105135	MGI:5663804	unclassified gene	predicted gene 43667
3	gene	34.05602	34.08135	negative	MGI_C57BL6J_1914963	Dnajc19	NCBI_Gene:67713,ENSEMBL:ENSMUSG00000027679	MGI:1914963	protein coding gene	DnaJ heat shock protein family (Hsp40) member C19
3	gene	34.07066	34.07600	positive	MGI_C57BL6J_5663805	Gm43668	ENSEMBL:ENSMUSG00000105176	MGI:5663805	unclassified gene	predicted gene 43668
3	gene	34.10427	34.68262	positive	MGI_C57BL6J_2444112	Sox2ot	NCBI_Gene:320478,ENSEMBL:ENSMUSG00000105265	MGI:2444112	lncRNA gene	SOX2 overlapping transcript (non-protein coding)
3	pseudogene	34.18331	34.18419	positive	MGI_C57BL6J_3647478	Gm5708	NCBI_Gene:435727,ENSEMBL:ENSMUSG00000105739	MGI:3647478	pseudogene	predicted gene 5708
3	gene	34.28133	34.35199	negative	MGI_C57BL6J_5621390	Gm38505	NCBI_Gene:102638008,ENSEMBL:ENSMUSG00000092196	MGI:5621390	lncRNA gene	predicted gene, 38505
3	gene	34.41544	34.41816	positive	MGI_C57BL6J_5593758	Gm34599	NCBI_Gene:102637903,ENSEMBL:ENSMUSG00000105577	MGI:5593758	lncRNA gene	predicted gene, 34599
3	gene	34.42737	34.43510	negative	MGI_C57BL6J_5141980	Gm20515	ENSEMBL:ENSMUSG00000092242	MGI:5141980	lncRNA gene	predicted gene 20515
3	gene	34.48143	34.48221	negative	MGI_C57BL6J_5579841	Gm29135	ENSEMBL:ENSMUSG00000099437	MGI:5579841	lncRNA gene	predicted gene 29135
3	gene	34.56034	34.56055	positive	MGI_C57BL6J_5530785	Gm27403	ENSEMBL:ENSMUSG00000098795	MGI:5530785	unclassified non-coding RNA gene	predicted gene, 27403
3	gene	34.56526	34.57220	negative	MGI_C57BL6J_5662832	Gm42695	ENSEMBL:ENSMUSG00000106525	MGI:5662832	lncRNA gene	predicted gene 42695
3	gene	34.59782	34.60488	negative	MGI_C57BL6J_5625090	Gm42205	NCBI_Gene:105247023,ENSEMBL:ENSMUSG00000105222	MGI:5625090	lncRNA gene	predicted gene, 42205
3	gene	34.63846	34.63854	positive	MGI_C57BL6J_3811407	Mir1897	miRBase:MI0008314,NCBI_Gene:100316679,ENSEMBL:ENSMUSG00000104797	MGI:3811407	miRNA gene	microRNA 1897
3	gene	34.64326	34.64610	positive	MGI_C57BL6J_5662829	Gm42692	ENSEMBL:ENSMUSG00000104901	MGI:5662829	unclassified gene	predicted gene 42692
3	gene	34.64999	34.65246	positive	MGI_C57BL6J_98364	Sox2	NCBI_Gene:20674,ENSEMBL:ENSMUSG00000074637	MGI:98364	protein coding gene	SRY (sex determining region Y)-box 2
3	gene	34.65318	34.65328	positive	MGI_C57BL6J_5530993	Gm27611	ENSEMBL:ENSMUSG00000098254	MGI:5530993	unclassified non-coding RNA gene	predicted gene, 27611
3	gene	34.66366	34.66429	negative	MGI_C57BL6J_5662830	Gm42693	ENSEMBL:ENSMUSG00000105284	MGI:5662830	unclassified gene	predicted gene 42693
3	gene	34.68263	34.68275	positive	MGI_C57BL6J_5663343	Gm43206	ENSEMBL:ENSMUSG00000105101	MGI:5663343	unclassified gene	predicted gene 43206
3	gene	34.68938	34.69292	positive	MGI_C57BL6J_5594100	Gm34941	NCBI_Gene:102638356	MGI:5594100	lncRNA gene	predicted gene, 34941
3	gene	34.69964	34.71666	negative	MGI_C57BL6J_3781322	Gm3143	NCBI_Gene:100041108,ENSEMBL:ENSMUSG00000105153	MGI:3781322	lncRNA gene	predicted gene 3143
3	gene	34.77208	34.78235	positive	MGI_C57BL6J_5621394	Gm38509	NCBI_Gene:102638436,ENSEMBL:ENSMUSG00000106519	MGI:5621394	lncRNA gene	predicted gene, 38509
3	gene	34.82656	34.87928	positive	MGI_C57BL6J_5434743	Gm21388	NCBI_Gene:100861998,ENSEMBL:ENSMUSG00000114832	MGI:5434743	lncRNA gene	predicted gene, 21388
3	gene	34.92254	34.92265	negative	MGI_C57BL6J_5531088	Mir6378	miRBase:MI0021909,NCBI_Gene:102466155,ENSEMBL:ENSMUSG00000098862	MGI:5531088	miRNA gene	microRNA 6378
3	gene	34.95023	34.95953	positive	MGI_C57BL6J_5594414	Gm35255	NCBI_Gene:102638771	MGI:5594414	lncRNA gene	predicted gene, 35255

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	36.52922	36.53233	negative	MGI_C57BL6J_5663674	Gm43537	ENSEMBL:ENSMUSG00000105022	MGI:5663674	unclassified gene	predicted gene 43537
3	pseudogene	36.53917	36.54010	negative	MGI_C57BL6J_3650891	Gm11550	NCBI_Gene:665709,ENSEMBL:ENSMUSG00000083388	MGI:3650891	pseudogene	predicted gene 11550
3	gene	36.55261	36.56573	positive	MGI_C57BL6J_1355319	Exosc9	NCBI_Gene:50911,ENSEMBL:ENSMUSG00000027714	MGI:1355319	protein coding gene	exosome component 9
3	gene	36.56486	36.57303	negative	MGI_C57BL6J_108069	Ccna2	NCBI_Gene:12428,ENSEMBL:ENSMUSG00000027715	MGI:108069	protein coding gene	cyclin A2
3	gene	36.57314	36.61349	negative	MGI_C57BL6J_1918742	Bbs7	NCBI_Gene:71492,ENSEMBL:ENSMUSG00000037325	MGI:1918742	protein coding gene	Bardet-Biedl syndrome 7 (human)
3	gene	36.62048	36.69022	negative	MGI_C57BL6J_109526	Trpc3	NCBI_Gene:22065,ENSEMBL:ENSMUSG00000027716	MGI:109526	protein coding gene	transient receptor potential cation channel, subfamily C, member 3
3	gene	36.65407	36.65501	negative	MGI_C57BL6J_5595015	Gm35856	NCBI_Gene:102639576	MGI:5595015	lncRNA gene	predicted gene, 35856
3	pseudogene	36.69480	36.69505	negative	MGI_C57BL6J_3651607	Gm12377	ENSEMBL:ENSMUSG00000082548	MGI:3651607	pseudogene	predicted gene 12377
3	pseudogene	36.82435	36.82506	negative	MGI_C57BL6J_3651608	Gm12376	NCBI_Gene:100417988,ENSEMBL:ENSMUSG00000084027	MGI:3651608	pseudogene	predicted gene 12376
3	gene	36.86306	37.05303	positive	MGI_C57BL6J_2444631	4932438A13Rik	NCBI_Gene:229227,ENSEMBL:ENSMUSG00000037270	MGI:2444631	protein coding gene	RIKEN cDNA 4932438A13 gene
3	gene	37.05221	37.06003	negative	MGI_C57BL6J_3650531	Gm12531	ENSEMBL:ENSMUSG00000086090	MGI:3650531	lncRNA gene	predicted gene 12531
3	gene	37.06309	37.12193	positive	MGI_C57BL6J_103258	Adad1	NCBI_Gene:21744,ENSEMBL:ENSMUSG00000027719	MGI:103258	protein coding gene	adenosine deaminase domain containing 1 (testis specific)
3	pseudogene	37.07756	37.07891	positive	MGI_C57BL6J_3651489	Gm12582	NCBI_Gene:652987,ENSEMBL:ENSMUSG00000081705	MGI:3651489	pseudogene	predicted gene 12582
3	pseudogene	37.10808	37.10933	positive	MGI_C57BL6J_3651485	Gm12583	NCBI_Gene:100416060,ENSEMBL:ENSMUSG00000082878	MGI:3651485	pseudogene	predicted gene 12583
3	pseudogene	37.11673	37.11784	positive	MGI_C57BL6J_3651486	Gm12584	ENSEMBL:ENSMUSG00000083857	MGI:3651486	pseudogene	predicted gene 12584
3	gene	37.12052	37.12596	negative	MGI_C57BL6J_96548	Il2	NCBI_Gene:16183,ENSEMBL:ENSMUSG00000027720	MGI:96548	protein coding gene	interleukin 2
3	gene	37.16972	37.17665	negative	MGI_C57BL6J_5595159	Gm36000	NCBI_Gene:102639768	MGI:5595159	lncRNA gene	predicted gene, 36000
3	gene	37.18218	37.18860	positive	MGI_C57BL6J_3650618	Gm12532	NCBI_Gene:102639848,ENSEMBL:ENSMUSG00000084754	MGI:3650618	lncRNA gene	predicted gene 12532
3	gene	37.22276	37.23264	negative	MGI_C57BL6J_1890474	Il21	NCBI_Gene:60505,ENSEMBL:ENSMUSG00000027718	MGI:1890474	protein coding gene	interleukin 21
3	gene	37.22538	37.22711	positive	MGI_C57BL6J_5595327	Gm36168	NCBI_Gene:102639985	MGI:5595327	lncRNA gene	predicted gene, 36168
3	gene	37.23133	37.23247	positive	MGI_C57BL6J_3650303	Gm12534	ENSEMBL:ENSMUSG00000086517	MGI:3650303	lncRNA gene	predicted gene 12534
3	gene	37.23287	37.23334	positive	MGI_C57BL6J_5663959	Gm43822	ENSEMBL:ENSMUSG00000104998	MGI:5663959	unclassified gene	predicted gene 43822
3	gene	37.25678	37.25689	negative	MGI_C57BL6J_5453946	Gm24169	ENSEMBL:ENSMUSG00000094007	MGI:5453946	miRNA gene	predicted gene, 24169
3	gene	37.30775	37.31271	negative	MGI_C57BL6J_2677454	Cetn4	NCBI_Gene:207175,ENSEMBL:ENSMUSG00000045031	MGI:2677454	protein coding gene	centrin 4
3	gene	37.31249	37.32145	positive	MGI_C57BL6J_2686651	Bbs12	NCBI_Gene:241950,ENSEMBL:ENSMUSG00000051444	MGI:2686651	protein coding gene	Bardet-Biedl syndrome 12 (human)
3	gene	37.31252	37.40487	positive	MGI_C57BL6J_5663576	Gm43439	ENSEMBL:ENSMUSG00000106407	MGI:5663576	lncRNA gene	predicted gene 43439
3	pseudogene	37.31253	37.32919	positive	MGI_C57BL6J_3651849	Gm12540	NCBI_Gene:102640067,ENSEMBL:ENSMUSG00000083353	MGI:3651849	pseudogene	predicted gene 12540
3	gene	37.33329	37.35103	negative	MGI_C57BL6J_3649376	Fgf2os	NCBI_Gene:329626,ENSEMBL:ENSMUSG00000054779	MGI:3649376	antisense lncRNA gene	fibroblast growth factor 2, opposite strand
3	gene	37.33902	37.34152	positive	MGI_C57BL6J_5663625	Gm43488	ENSEMBL:ENSMUSG00000105063	MGI:5663625	unclassified gene	predicted gene 43488
3	gene	37.34835	37.41011	positive	MGI_C57BL6J_95516	Fgf2	NCBI_Gene:14173,ENSEMBL:ENSMUSG00000037225	MGI:95516	protein coding gene	fibroblast growth factor 2
3	gene	37.39221	37.39510	negative	MGI_C57BL6J_5663060	Gm42923	ENSEMBL:ENSMUSG00000105134	MGI:5663060	unclassified gene	predicted gene 42923
3	gene	37.40491	37.42021	negative	MGI_C57BL6J_2387618	Nudt6	NCBI_Gene:229228,ENSEMBL:ENSMUSG00000050174	MGI:2387618	protein coding gene	nudix (nucleoside diphosphate linked moiety X)-type motif 6
3	gene	37.41990	37.57910	positive	MGI_C57BL6J_1927170	Spata5	NCBI_Gene:57815,ENSEMBL:ENSMUSG00000027722	MGI:1927170	protein coding gene	spermatogenesis associated 5
3	gene	37.48883	37.49479	positive	MGI_C57BL6J_5663621	Gm43484	ENSEMBL:ENSMUSG00000106166	MGI:5663621	unclassified gene	predicted gene 43484
3	gene	37.54188	37.60239	negative	MGI_C57BL6J_5595571	Gm36412	NCBI_Gene:102640314	MGI:5595571	lncRNA gene	predicted gene, 36412
3	pseudogene	37.55618	37.55650	negative	MGI_C57BL6J_3652207	Gm12564	ENSEMBL:ENSMUSG00000080723	MGI:3652207	pseudogene	predicted gene 12564
3	pseudogene	37.59942	37.60007	negative	MGI_C57BL6J_3652206	Gm12565	NCBI_Gene:665778,ENSEMBL:ENSMUSG00000081093	MGI:3652206	pseudogene	predicted gene 12565
3	gene	37.60989	37.61528	positive	MGI_C57BL6J_1923197	4930594O21Rik	NCBI_Gene:75947,ENSEMBL:ENSMUSG00000085677	MGI:1923197	lncRNA gene	RIKEN cDNA 4930594O21 gene
3	gene	37.63858	37.64066	negative	MGI_C57BL6J_5663059	Gm42922	ENSEMBL:ENSMUSG00000104605	MGI:5663059	unclassified gene	predicted gene 42922
3	gene	37.63995	37.64460	positive	MGI_C57BL6J_1345139	Spry1	NCBI_Gene:24063,ENSEMBL:ENSMUSG00000037211	MGI:1345139	protein coding gene	sprouty RTK signaling antagonist 1
3	gene	37.64461	37.64795	positive	MGI_C57BL6J_5663957	Gm43820	ENSEMBL:ENSMUSG00000106062	MGI:5663957	unclassified gene	predicted gene 43820
3	gene	37.65268	37.65652	negative	MGI_C57BL6J_5826436	Gm46799	NCBI_Gene:108168864	MGI:5826436	lncRNA gene	predicted gene, 46799
3	gene	37.69046	37.69486	negative	MGI_C57BL6J_5625096	Gm42211	NCBI_Gene:105247029	MGI:5625096	lncRNA gene	predicted gene, 42211
3	gene	37.70802	37.71121	positive	MGI_C57BL6J_5663551	Gm43414	ENSEMBL:ENSMUSG00000104935	MGI:5663551	unclassified gene	predicted gene 43414
3	gene	37.71419	37.72449	negative	MGI_C57BL6J_3646006	Gm5148	NCBI_Gene:381438,ENSEMBL:ENSMUSG00000058174	MGI:3646006	protein coding gene	predicted gene 5148
3	pseudogene	37.71471	37.71522	positive	MGI_C57BL6J_3705429	Rps23-ps1	NCBI_Gene:100038875,ENSEMBL:ENSMUSG00000100755	MGI:3705429	pseudogene	ribosomal protein S23, pseudogene 1
3	gene	37.72423	37.74132	positive	MGI_C57BL6J_5595779	Gm36620	NCBI_Gene:102640592	MGI:5595779	lncRNA gene	predicted gene, 36620
3	pseudogene	37.73468	37.73514	positive	MGI_C57BL6J_3643738	Rpl31-ps15	NCBI_Gene:626367,ENSEMBL:ENSMUSG00000097304	MGI:3643738	pseudogene	ribosomal protein L31, pseudogene 15
3	gene	37.75320	37.77440	positive	MGI_C57BL6J_5625095	Gm42210	NCBI_Gene:105247028	MGI:5625095	lncRNA gene	predicted gene, 42210
3	gene	37.76104	37.76730	positive	MGI_C57BL6J_5663058	Gm42921	ENSEMBL:ENSMUSG00000106441	MGI:5663058	lncRNA gene	predicted gene 42921
3	gene	37.80254	37.80265	negative	MGI_C57BL6J_5456181	Gm26404	ENSEMBL:ENSMUSG00000089123	MGI:5456181	snoRNA gene	predicted gene, 26404
3	gene	37.82822	37.84829	positive	MGI_C57BL6J_1925294	4930556A17Rik	NCBI_Gene:102640520	MGI:1925294	lncRNA gene	RIKEN cDNA 4930556A17 gene
3	gene	37.83847	37.83957	positive	MGI_C57BL6J_5662889	Gm42752	ENSEMBL:ENSMUSG00000106621	MGI:5662889	unclassified gene	predicted gene 42752
3	gene	37.84180	37.84307	positive	MGI_C57BL6J_5662890	Gm42753	ENSEMBL:ENSMUSG00000105252	MGI:5662890	unclassified gene	predicted gene 42753
3	gene	37.89881	37.99273	positive	MGI_C57BL6J_5434111	Gm20755	NCBI_Gene:626410,ENSEMBL:ENSMUSG00000106461	MGI:5434111	lncRNA gene	predicted gene, 20755
3	pseudogene	37.95961	37.96009	negative	MGI_C57BL6J_3643378	Gm7799	ENSEMBL:ENSMUSG00000087457	MGI:3643378	pseudogene	predicted gene 7799
3	gene	37.98279	37.98335	positive	MGI_C57BL6J_5662888	Gm42751	ENSEMBL:ENSMUSG00000105099	MGI:5662888	unclassified gene	predicted gene 42751
3	gene	37.99511	37.99524	negative	MGI_C57BL6J_5452676	Gm22899	ENSEMBL:ENSMUSG00000077728	MGI:5452676	snoRNA gene	predicted gene, 22899
3	gene	38.09463	38.13019	negative	MGI_C57BL6J_5663958	Gm43821	ENSEMBL:ENSMUSG00000105219	MGI:5663958	lncRNA gene	predicted gene 43821
3	pseudogene	38.10123	38.10798	negative	MGI_C57BL6J_3643358	Rpl21-ps10	NCBI_Gene:665821,ENSEMBL:ENSMUSG00000105359	MGI:3643358	pseudogene	ribosomal protein L21, pseudogene 10
3	gene	38.15191	38.15915	positive	MGI_C57BL6J_5595839	Gm36680	NCBI_Gene:102640666	MGI:5595839	lncRNA gene	predicted gene, 36680
3	gene	38.20315	38.20812	negative	MGI_C57BL6J_1918592	5430434I15Rik	NCBI_Gene:71342,ENSEMBL:ENSMUSG00000106002	MGI:1918592	lncRNA gene	RIKEN cDNA 5430434I15 gene
3	pseudogene	38.22345	38.22382	positive	MGI_C57BL6J_3781143	Gm2965	NCBI_Gene:100040785,ENSEMBL:ENSMUSG00000105943	MGI:3781143	pseudogene	predicted gene 2965
3	pseudogene	38.25402	38.25480	positive	MGI_C57BL6J_5010140	Gm17955	NCBI_Gene:100416169	MGI:5010140	pseudogene	predicted gene, 17955
3	gene	38.26784	38.26808	negative	MGI_C57BL6J_5455351	Gm25574	ENSEMBL:ENSMUSG00000092986	MGI:5455351	unclassified non-coding RNA gene	predicted gene, 25574
3	gene	38.36615	38.36888	negative	MGI_C57BL6J_5625098	Gm42213	NCBI_Gene:105247031	MGI:5625098	lncRNA gene	predicted gene, 42213
3	gene	38.36940	38.37364	positive	MGI_C57BL6J_5663057	Gm42920	ENSEMBL:ENSMUSG00000106008	MGI:5663057	lncRNA gene	predicted gene 42920
3	gene	38.41897	38.42015	negative	MGI_C57BL6J_1917958	3830422I06Rik	ENSEMBL:ENSMUSG00000106485	MGI:1917958	unclassified gene	RIKEN cDNA 3830422I06 gene
3	gene	38.42655	38.44387	negative	MGI_C57BL6J_5595982	Gm36823	NCBI_Gene:102640855,ENSEMBL:ENSMUSG00000105516	MGI:5595982	lncRNA gene	predicted gene, 36823
3	pseudogene	38.43895	38.43984	negative	MGI_C57BL6J_3646285	Gm7815	NCBI_Gene:665838,ENSEMBL:ENSMUSG00000106201	MGI:3646285	pseudogene	predicted gene 7815
3	gene	38.44926	38.48486	negative	MGI_C57BL6J_2139777	Ankrd50	NCBI_Gene:99696,ENSEMBL:ENSMUSG00000044864	MGI:2139777	protein coding gene	ankyrin repeat domain 50
3	pseudogene	38.55797	38.55886	negative	MGI_C57BL6J_3779766	Gm7824	NCBI_Gene:665855,ENSEMBL:ENSMUSG00000105360	MGI:3779766	pseudogene	predicted gene 7824
3	gene	38.55811	38.55821	negative	MGI_C57BL6J_5454239	Gm24462	ENSEMBL:ENSMUSG00000076385	MGI:5454239	miRNA gene	predicted gene, 24462
3	gene	38.61425	38.61556	positive	MGI_C57BL6J_5663675	Gm43538	ENSEMBL:ENSMUSG00000106168	MGI:5663675	lncRNA gene	predicted gene 43538
3	gene	38.66361	38.70922	positive	MGI_C57BL6J_5589038	Gm29879	NCBI_Gene:102631576	MGI:5589038	lncRNA gene	predicted gene, 29879
3	gene	38.76048	38.76195	negative	MGI_C57BL6J_5589118	Gm29959	NCBI_Gene:102631683	MGI:5589118	lncRNA gene	predicted gene, 29959
3	gene	38.87457	38.88826	negative	MGI_C57BL6J_2441892	C230034O21Rik	NCBI_Gene:102632538,ENSEMBL:ENSMUSG00000086181	MGI:2441892	lncRNA gene	RIKEN cDNA C230034O21 gene
3	gene	38.88563	39.01199	positive	MGI_C57BL6J_3045256	Fat4	NCBI_Gene:329628,ENSEMBL:ENSMUSG00000046743	MGI:3045256	protein coding gene	FAT atypical cadherin 4
3	gene	39.00860	39.00968	negative	MGI_C57BL6J_5663676	Gm43539	ENSEMBL:ENSMUSG00000105910	MGI:5663676	lncRNA gene	predicted gene 43539
3	pseudogene	39.12853	39.12891	negative	MGI_C57BL6J_5663445	Gm43308	ENSEMBL:ENSMUSG00000104792	MGI:5663445	pseudogene	predicted gene 43308
3	gene	39.15083	39.15967	negative	MGI_C57BL6J_5589170	Gm30011	NCBI_Gene:102631750	MGI:5589170	lncRNA gene	predicted gene, 30011
3	pseudogene	39.21756	39.21785	negative	MGI_C57BL6J_5663145	Gm43008	ENSEMBL:ENSMUSG00000107333	MGI:5663145	pseudogene	predicted gene 43008
3	gene	39.27713	39.30593	positive	MGI_C57BL6J_5625099	Gm42214	NCBI_Gene:105247032	MGI:5625099	lncRNA gene	predicted gene, 42214
3	pseudogene	39.35737	39.35913	negative	MGI_C57BL6J_3704215	Gm9845	NCBI_Gene:100040853,ENSEMBL:ENSMUSG00000050533	MGI:3704215	pseudogene	predicted pseudogene 9845
3	pseudogene	39.44389	39.44435	positive	MGI_C57BL6J_5295673	Gm20566	NCBI_Gene:100047050	MGI:5295673	pseudogene	predicted gene, 20566
3	gene	39.46078	39.59865	positive	MGI_C57BL6J_5589222	Gm30063	NCBI_Gene:102631823	MGI:5589222	lncRNA gene	predicted gene, 30063
3	gene	39.52552	39.53415	negative	MGI_C57BL6J_5625100	Gm42215	NCBI_Gene:105247033	MGI:5625100	lncRNA gene	predicted gene, 42215
3	gene	39.63596	39.63608	negative	MGI_C57BL6J_4422060	n-R5s195	ENSEMBL:ENSMUSG00000093952	MGI:4422060	rRNA gene	nuclear encoded rRNA 5S 195
3	gene	39.63606	39.63878	positive	MGI_C57BL6J_5662918	Gm42781	ENSEMBL:ENSMUSG00000106786	MGI:5662918	unclassified gene	predicted gene 42781
3	gene	39.66629	39.66645	positive	MGI_C57BL6J_5453573	Gm23796	ENSEMBL:ENSMUSG00000065945	MGI:5453573	snRNA gene	predicted gene, 23796
3	gene	39.71315	39.72565	positive	MGI_C57BL6J_5826471	Gm46834	NCBI_Gene:108168914	MGI:5826471	lncRNA gene	predicted gene, 46834

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	46.28983	46.28996	positive	MGI_C57BL6J_5455858	Gm26081	ENSEMBL:ENSMUSG00000077256	MGI:5455858	snoRNA gene	predicted gene, 26081
3	pseudogene	46.41340	46.41412	positive	MGI_C57BL6J_5011028	Gm18843	NCBI_Gene:100417811,ENSEMBL:ENSMUSG00000104511	MGI:5011028	pseudogene	predicted gene, 18843
3	gene	46.44085	46.44822	negative	MGI_C57BL6J_3643087	Pabpc4l	NCBI_Gene:241989,ENSEMBL:ENSMUSG00000090919	MGI:3643087	protein coding gene	poly(A) binding protein, cytoplasmic 4-like
3	pseudogene	46.62112	46.62136	positive	MGI_C57BL6J_5610673	Gm37445	ENSEMBL:ENSMUSG00000102589	MGI:5610673	pseudogene	predicted gene, 37445

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	pseudogene	47.45961	47.46034	negative	MGI_C57BL6J_3780399	Gm2229	NCBI_Gene:100039426,ENSEMBL:ENSMUSG00000103798	MGI:3780399	pseudogene	predicted gene 2229
3	pseudogene	48.02601	48.02676	negative	MGI_C57BL6J_3648898	Gm7977	NCBI_Gene:666202,ENSEMBL:ENSMUSG00000103257	MGI:3648898	pseudogene	predicted gene 7977
3	gene	48.07834	48.07845	positive	MGI_C57BL6J_5610523	Gm37295	ENSEMBL:ENSMUSG00000104110	MGI:5610523	unclassified gene	predicted gene, 37295
3	gene	48.54642	48.57947	positive	MGI_C57BL6J_5826472	Gm46835	NCBI_Gene:108168915	MGI:5826472	lncRNA gene	predicted gene, 46835
3	gene	48.60573	48.60910	negative	MGI_C57BL6J_1913582	1700018B24Rik	NCBI_Gene:66332,ENSEMBL:ENSMUSG00000037910	MGI:1913582	lncRNA gene	RIKEN cDNA 1700018B24 gene
3	gene	48.74851	48.76095	negative	MGI_C57BL6J_5610418	Gm37190	ENSEMBL:ENSMUSG00000102181	MGI:5610418	lncRNA gene	predicted gene, 37190

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	48.95472	48.95488	positive	MGI_C57BL6J_5453288	Gm23511	ENSEMBL:ENSMUSG00000065018	MGI:5453288	snRNA gene	predicted gene, 23511
3	gene	49.06237	49.09636	positive	MGI_C57BL6J_5590574	Gm31415	NCBI_Gene:102633632,ENSEMBL:ENSMUSG00000102263	MGI:5590574	lncRNA gene	predicted gene, 31415
3	gene	49.13746	49.13853	positive	MGI_C57BL6J_5611047	Gm37819	ENSEMBL:ENSMUSG00000104186	MGI:5611047	unclassified gene	predicted gene, 37819
3	pseudogene	49.20771	49.20807	negative	MGI_C57BL6J_5610912	Gm37684	ENSEMBL:ENSMUSG00000103027	MGI:5610912	pseudogene	predicted gene, 37684
3	gene	49.32568	49.36736	positive	MGI_C57BL6J_5295664	Gm20557	NCBI_Gene:329633,ENSEMBL:ENSMUSG00000102679	MGI:5295664	lncRNA gene	predicted gene, 20557
3	pseudogene	49.38115	49.38285	negative	MGI_C57BL6J_3643624	Gm5846	NCBI_Gene:545519,ENSEMBL:ENSMUSG00000104309	MGI:3643624	pseudogene	predicted gene 5846
3	pseudogene	49.40082	49.46744	negative	MGI_C57BL6J_3780091	Gm9683	NCBI_Gene:676568	MGI:3780091	pseudogene	predicted gene 9683
3	gene	49.49135	49.49148	positive	MGI_C57BL6J_5452257	Gm22480	ENSEMBL:ENSMUSG00000084517	MGI:5452257	snoRNA gene	predicted gene, 22480
3	pseudogene	49.53075	49.53131	positive	MGI_C57BL6J_5610652	Gm37424	ENSEMBL:ENSMUSG00000104437	MGI:5610652	pseudogene	predicted gene, 37424
3	pseudogene	49.60356	49.60388	positive	MGI_C57BL6J_5611489	Gm38261	ENSEMBL:ENSMUSG00000102731	MGI:5611489	pseudogene	predicted gene, 38261
3	pseudogene	49.60423	49.60447	positive	MGI_C57BL6J_5611316	Gm38088	ENSEMBL:ENSMUSG00000103249	MGI:5611316	pseudogene	predicted gene, 38088
3	pseudogene	49.63244	49.63297	negative	MGI_C57BL6J_3780498	Gm2328	NCBI_Gene:100039587,ENSEMBL:ENSMUSG00000104134	MGI:3780498	pseudogene	predicted gene 2328
3	pseudogene	49.64348	49.64413	positive	MGI_C57BL6J_5588900	Gm29741	NCBI_Gene:101055903,ENSEMBL:ENSMUSG00000103568	MGI:5588900	pseudogene	predicted gene, 29741
3	gene	49.65876	49.65887	positive	MGI_C57BL6J_5452873	Gm23096	ENSEMBL:ENSMUSG00000065381	MGI:5452873	snRNA gene	predicted gene, 23096
3	gene	49.74329	49.75738	negative	MGI_C57BL6J_1920423	Pcdh18	NCBI_Gene:73173,ENSEMBL:ENSMUSG00000037892	MGI:1920423	protein coding gene	protocadherin 18
3	pseudogene	49.78043	49.78089	negative	MGI_C57BL6J_5610778	Gm37550	ENSEMBL:ENSMUSG00000102943	MGI:5610778	pseudogene	predicted gene, 37550
3	gene	49.89253	50.49909	negative	MGI_C57BL6J_1347355	Slc7a11	NCBI_Gene:26570,ENSEMBL:ENSMUSG00000027737	MGI:1347355	protein coding gene	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
3	gene	50.00197	50.01078	positive	MGI_C57BL6J_5611082	Gm37854	ENSEMBL:ENSMUSG00000102892	MGI:5611082	lncRNA gene	predicted gene, 37854
3	gene	50.01177	50.02624	negative	MGI_C57BL6J_5622927	Gm40042	NCBI_Gene:105244434	MGI:5622927	lncRNA gene	predicted gene, 40042
3	pseudogene	50.02967	50.02999	positive	MGI_C57BL6J_5611054	Gm37826	ENSEMBL:ENSMUSG00000104457	MGI:5611054	pseudogene	predicted gene, 37826
3	pseudogene	50.16666	50.16689	negative	MGI_C57BL6J_5610920	Gm37692	ENSEMBL:ENSMUSG00000104349	MGI:5610920	pseudogene	predicted gene, 37692
3	pseudogene	50.25485	50.25544	positive	MGI_C57BL6J_3780515	Gm2345	NCBI_Gene:100039628,ENSEMBL:ENSMUSG00000102167	MGI:3780515	pseudogene	predicted gene 2345
3	gene	50.40028	50.40428	negative	MGI_C57BL6J_5610726	Gm37498	ENSEMBL:ENSMUSG00000103907	MGI:5610726	unclassified gene	predicted gene, 37498
3	gene	50.51640	50.60731	negative	MGI_C57BL6J_3643374	Gm6209	NCBI_Gene:621304,ENSEMBL:ENSMUSG00000102715	MGI:3643374	lncRNA gene	predicted gene 6209
3	gene	50.57519	50.57652	negative	MGI_C57BL6J_1923259	5830415G21Rik	ENSEMBL:ENSMUSG00000102895	MGI:1923259	unclassified gene	RIKEN cDNA 5830415G21 gene
3	pseudogene	50.59799	50.59850	negative	MGI_C57BL6J_5611465	Gm38237	NCBI_Gene:108168851,ENSEMBL:ENSMUSG00000103745	MGI:5611465	pseudogene	predicted gene, 38237
3	gene	50.62435	50.62841	negative	MGI_C57BL6J_5610427	Gm37199	ENSEMBL:ENSMUSG00000104068	MGI:5610427	unclassified gene	predicted gene, 37199
3	gene	50.67970	50.68340	negative	MGI_C57BL6J_5610689	Gm37461	ENSEMBL:ENSMUSG00000104281	MGI:5610689	unclassified gene	predicted gene, 37461
3	gene	50.70690	50.71189	negative	MGI_C57BL6J_5622928	Gm40043	NCBI_Gene:105244435	MGI:5622928	lncRNA gene	predicted gene, 40043
3	gene	50.83858	50.83872	negative	MGI_C57BL6J_5454280	Gm24503	ENSEMBL:ENSMUSG00000089079	MGI:5454280	snoRNA gene	predicted gene, 24503
3	gene	50.88324	50.88889	negative	MGI_C57BL6J_5610776	Gm37548	NCBI_Gene:105244436,ENSEMBL:ENSMUSG00000103012	MGI:5610776	lncRNA gene	predicted gene, 37548
3	gene	50.91889	50.92153	negative	MGI_C57BL6J_5611071	Gm37843	ENSEMBL:ENSMUSG00000102614	MGI:5611071	unclassified gene	predicted gene, 37843
3	gene	50.96656	50.96677	positive	MGI_C57BL6J_2139603	AA672641	NA	NA	unclassified gene	expressed sequence AA672641
3	gene	50.97754	50.97881	negative	MGI_C57BL6J_5610437	Gm37209	ENSEMBL:ENSMUSG00000103652	MGI:5610437	unclassified gene	predicted gene, 37209
3	gene	51.03335	51.04284	negative	MGI_C57BL6J_5594915	Gm35756	NCBI_Gene:102639442	MGI:5594915	lncRNA gene	predicted gene, 35756
3	gene	51.05891	51.08934	negative	MGI_C57BL6J_5579936	Gm29230	NCBI_Gene:102639521,ENSEMBL:ENSMUSG00000102067	MGI:5579936	lncRNA gene	predicted gene 29230
3	gene	51.10366	51.10517	positive	MGI_C57BL6J_5611474	Gm38246	ENSEMBL:ENSMUSG00000103464	MGI:5611474	lncRNA gene	predicted gene, 38246
3	gene	51.12669	51.12894	negative	MGI_C57BL6J_5595050	Gm35891	NCBI_Gene:102639626	MGI:5595050	lncRNA gene	predicted gene, 35891
3	gene	51.21847	51.22033	negative	MGI_C57BL6J_5622929	Gm40044	NCBI_Gene:105244437	MGI:5622929	lncRNA gene	predicted gene, 40044
3	gene	51.22445	51.25165	positive	MGI_C57BL6J_109382	Noct	NCBI_Gene:12457,ENSEMBL:ENSMUSG00000023087	MGI:109382	protein coding gene	nocturnin
3	gene	51.23192	51.23438	positive	MGI_C57BL6J_5611585	Gm38357	ENSEMBL:ENSMUSG00000103313	MGI:5611585	unclassified gene	predicted gene, 38357

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	51.51099	51.51430	positive	MGI_C57BL6J_5595167	Gm36008	NCBI_Gene:102639777	MGI:5595167	lncRNA gene	predicted gene, 36008
3	gene	51.51532	51.56088	negative	MGI_C57BL6J_1920501	Setd7	NCBI_Gene:73251,ENSEMBL:ENSMUSG00000037111	MGI:1920501	protein coding gene	SET domain containing (lysine methyltransferase) 7
3	gene	51.55754	51.55965	negative	MGI_C57BL6J_5611428	Gm38200	ENSEMBL:ENSMUSG00000102466	MGI:5611428	unclassified gene	predicted gene, 38200
3	gene	51.55976	51.56712	positive	MGI_C57BL6J_1923230	5031434O11Rik	NCBI_Gene:100039684,ENSEMBL:ENSMUSG00000097885	MGI:1923230	lncRNA gene	RIKEN cDNA 5031434O11 gene
3	pseudogene	51.57111	51.57142	negative	MGI_C57BL6J_5611562	Gm38334	ENSEMBL:ENSMUSG00000104001	MGI:5611562	pseudogene	predicted gene, 38334
3	gene	51.58231	51.58285	positive	MGI_C57BL6J_1918620	5430433H01Rik	ENSEMBL:ENSMUSG00000104075	MGI:1918620	unclassified gene	RIKEN cDNA 5430433H01 gene
3	pseudogene	51.63649	51.63705	negative	MGI_C57BL6J_5611475	Gm38247	NCBI_Gene:108168852,ENSEMBL:ENSMUSG00000104166	MGI:5611475	pseudogene	predicted gene, 38247
3	gene	51.66036	51.68268	positive	MGI_C57BL6J_2448481	Mgst2	NCBI_Gene:211666,ENSEMBL:ENSMUSG00000074604	MGI:2448481	protein coding gene	microsomal glutathione S-transferase 2
3	gene	51.67280	51.67390	positive	MGI_C57BL6J_5610489	Gm37261	ENSEMBL:ENSMUSG00000103527	MGI:5610489	unclassified gene	predicted gene, 37261
3	gene	51.68591	52.10509	negative	MGI_C57BL6J_2389461	Maml3	NCBI_Gene:433586,ENSEMBL:ENSMUSG00000061143	MGI:2389461	protein coding gene	mastermind like transcriptional coactivator 3
3	gene	51.69372	51.69509	positive	MGI_C57BL6J_3642905	Gm10729	ENSEMBL:ENSMUSG00000074603	MGI:3642905	protein coding gene	predicted gene 10729
3	gene	51.70772	51.71225	positive	MGI_C57BL6J_5826440	Gm46803	NCBI_Gene:108168869	MGI:5826440	lncRNA gene	predicted gene, 46803
3	gene	51.75712	51.76209	negative	MGI_C57BL6J_5610570	Gm37342	ENSEMBL:ENSMUSG00000102732	MGI:5610570	unclassified gene	predicted gene, 37342
3	gene	51.81295	51.81931	positive	MGI_C57BL6J_5610457	Gm37229	ENSEMBL:ENSMUSG00000102539	MGI:5610457	lncRNA gene	predicted gene, 37229
3	gene	51.82891	51.82903	positive	MGI_C57BL6J_4422061	n-R5s196	ENSEMBL:ENSMUSG00000065070	MGI:4422061	rRNA gene	nuclear encoded rRNA 5S 196
3	gene	51.82939	51.83040	negative	MGI_C57BL6J_1920491	3110080O07Rik	ENSEMBL:ENSMUSG00000103284	MGI:1920491	unclassified gene	RIKEN cDNA 3110080O07 gene
3	gene	51.86735	51.86856	negative	MGI_C57BL6J_5611228	Gm38000	ENSEMBL:ENSMUSG00000103484	MGI:5611228	unclassified gene	predicted gene, 38000
3	gene	51.87299	51.87584	negative	MGI_C57BL6J_5610903	Gm37675	ENSEMBL:ENSMUSG00000102620	MGI:5610903	unclassified gene	predicted gene, 37675
3	gene	51.88428	51.88689	negative	MGI_C57BL6J_5611480	Gm38252	ENSEMBL:ENSMUSG00000102786	MGI:5611480	unclassified gene	predicted gene, 38252
3	pseudogene	51.90699	51.90882	negative	MGI_C57BL6J_3708672	Gm10728	ENSEMBL:ENSMUSG00000103701	MGI:3708672	pseudogene	predicted gene 10728
3	gene	51.98094	51.99007	positive	MGI_C57BL6J_5012274	Gm20089	ENSEMBL:ENSMUSG00000104161	MGI:5012274	lncRNA gene	predicted gene, 20089
3	gene	51.98763	51.98985	negative	MGI_C57BL6J_5611283	Gm38055	ENSEMBL:ENSMUSG00000102147	MGI:5611283	unclassified gene	predicted gene, 38055
3	gene	51.99134	51.99196	negative	MGI_C57BL6J_5610754	Gm37526	ENSEMBL:ENSMUSG00000103784	MGI:5610754	unclassified gene	predicted gene, 37526
3	gene	52.00074	52.00402	negative	MGI_C57BL6J_5610693	Gm37465	ENSEMBL:ENSMUSG00000102423	MGI:5610693	unclassified gene	predicted gene, 37465
3	gene	52.05729	52.06424	negative	MGI_C57BL6J_2444420	C130089K02Rik	ENSEMBL:ENSMUSG00000104339	MGI:2444420	unclassified gene	RIKEN cDNA C130089K02 gene
3	gene	52.07159	52.07339	negative	MGI_C57BL6J_1921741	5430420F09Rik	ENSEMBL:ENSMUSG00000102808	MGI:1921741	unclassified gene	RIKEN cDNA 5430420F09 gene
3	gene	52.13405	52.22200	negative	MGI_C57BL6J_5610430	Gm37202	ENSEMBL:ENSMUSG00000103655	MGI:5610430	lncRNA gene	predicted gene, 37202
3	gene	52.17108	52.18013	negative	MGI_C57BL6J_5589233	Gm30074	NCBI_Gene:102631843,ENSEMBL:ENSMUSG00000103726	MGI:5589233	lncRNA gene	predicted gene, 30074
3	gene	52.18657	52.18796	positive	MGI_C57BL6J_5611360	Gm38132	ENSEMBL:ENSMUSG00000104055	MGI:5611360	lncRNA gene	predicted gene, 38132
3	gene	52.19825	52.20049	positive	MGI_C57BL6J_5610398	Gm37170	ENSEMBL:ENSMUSG00000103170	MGI:5610398	lncRNA gene	predicted gene, 37170
3	pseudogene	52.23684	52.24694	negative	MGI_C57BL6J_3031232	Olfr1398-ps1	NCBI_Gene:404507,ENSEMBL:ENSMUSG00000102510	MGI:3031232	pseudogene	olfactory receptor 1398, pseudogene 1
3	gene	52.23745	52.25650	positive	MGI_C57BL6J_5589284	Gm30125	NCBI_Gene:102631910	MGI:5589284	lncRNA gene	predicted gene, 30125
3	gene	52.26834	52.35322	positive	MGI_C57BL6J_1890077	Foxo1	NCBI_Gene:56458,ENSEMBL:ENSMUSG00000044167	MGI:1890077	protein coding gene	forkhead box O1
3	gene	52.26843	52.26944	negative	MGI_C57BL6J_5141867	Gm20402	ENSEMBL:ENSMUSG00000092405	MGI:5141867	lncRNA gene	predicted gene 20402
3	gene	52.28224	52.28431	positive	MGI_C57BL6J_5611262	Gm38034	ENSEMBL:ENSMUSG00000102844	MGI:5611262	unclassified gene	predicted gene, 38034

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	52.46717	52.49327	positive	MGI_C57BL6J_5621422	Gm38537	NCBI_Gene:102641152	MGI:5621422	lncRNA gene	predicted gene, 38537
3	gene	52.50277	52.55022	positive	MGI_C57BL6J_5589332	Gm30173	NCBI_Gene:102631981,ENSEMBL:ENSMUSG00000103965	MGI:5589332	lncRNA gene	predicted gene, 30173
3	gene	52.58013	52.58907	positive	MGI_C57BL6J_5622932	Gm40047	NCBI_Gene:105244440	MGI:5622932	lncRNA gene	predicted gene, 40047
3	pseudogene	52.61282	52.61402	positive	MGI_C57BL6J_3704216	Gm10293	NCBI_Gene:100039762,ENSEMBL:ENSMUSG00000070490	MGI:3704216	pseudogene	predicted pseudogene 10293
3	gene	52.64989	52.70971	positive	MGI_C57BL6J_5589394	Gm30235	NCBI_Gene:102632062	MGI:5589394	lncRNA gene	predicted gene, 30235
3	gene	52.72265	52.72275	negative	MGI_C57BL6J_5452575	Gm22798	ENSEMBL:ENSMUSG00000065926	MGI:5452575	snRNA gene	predicted gene, 22798
3	gene	52.73972	52.77666	positive	MGI_C57BL6J_3780614	Gm2447	NCBI_Gene:329639,ENSEMBL:ENSMUSG00000102785	MGI:3780614	lncRNA gene	predicted gene 2447
3	gene	52.78900	52.79781	negative	MGI_C57BL6J_5589451	Gm30292	NCBI_Gene:102632139,ENSEMBL:ENSMUSG00000104109	MGI:5589451	lncRNA gene	predicted gene, 30292
3	gene	52.90676	52.92767	negative	MGI_C57BL6J_5434106	Gm20750	NCBI_Gene:622124,ENSEMBL:ENSMUSG00000104401	MGI:5434106	lncRNA gene	predicted gene, 20750
3	gene	52.93325	52.95628	positive	MGI_C57BL6J_5589510	Gm30351	NCBI_Gene:102632211	MGI:5589510	lncRNA gene	predicted gene, 30351
3	gene	52.95618	52.95789	negative	MGI_C57BL6J_5589561	Gm30402	NCBI_Gene:102632287	MGI:5589561	lncRNA gene	predicted gene, 30402
3	pseudogene	52.96005	52.96037	negative	MGI_C57BL6J_5610235	Gm37007	ENSEMBL:ENSMUSG00000103886	MGI:5610235	pseudogene	predicted gene, 37007
3	gene	52.98188	53.01724	negative	MGI_C57BL6J_1914792	Cog6	NCBI_Gene:67542,ENSEMBL:ENSMUSG00000027742	MGI:1914792	protein coding gene	component of oligomeric golgi complex 6
3	gene	53.03858	53.04176	negative	MGI_C57BL6J_5663038	Gm42901	ENSEMBL:ENSMUSG00000104850	MGI:5663038	lncRNA gene	predicted gene 42901
3	gene	53.04153	53.26168	positive	MGI_C57BL6J_1920048	Lhfp	NCBI_Gene:108927,ENSEMBL:ENSMUSG00000048332	MGI:1920048	protein coding gene	lipoma HMGIC fusion partner
3	gene	53.07216	53.07524	negative	MGI_C57BL6J_5663035	Gm42898	ENSEMBL:ENSMUSG00000104828	MGI:5663035	unclassified gene	predicted gene 42898
3	gene	53.08322	53.08588	positive	MGI_C57BL6J_5663036	Gm42899	ENSEMBL:ENSMUSG00000104687	MGI:5663036	unclassified gene	predicted gene 42899
3	gene	53.09900	53.10318	positive	MGI_C57BL6J_2443940	C130075A20Rik	ENSEMBL:ENSMUSG00000104735	MGI:2443940	unclassified gene	RIKEN cDNA C130075A20 gene
3	gene	53.10967	53.11012	positive	MGI_C57BL6J_5663941	Gm43804	ENSEMBL:ENSMUSG00000104615	MGI:5663941	unclassified gene	predicted gene 43804
3	gene	53.11040	53.11341	negative	MGI_C57BL6J_5663940	Gm43803	ENSEMBL:ENSMUSG00000104968	MGI:5663940	lncRNA gene	predicted gene 43803
3	gene	53.11217	53.11299	positive	MGI_C57BL6J_5663942	Gm43805	ENSEMBL:ENSMUSG00000105971	MGI:5663942	unclassified gene	predicted gene 43805
3	pseudogene	53.34649	53.34723	negative	MGI_C57BL6J_5663609	Gm43472	ENSEMBL:ENSMUSG00000106660	MGI:5663609	pseudogene	predicted gene 43472
3	gene	53.39575	53.39850	positive	MGI_C57BL6J_5622933	Gm40048	NCBI_Gene:105244441	MGI:5622933	lncRNA gene	predicted gene, 40048
3	pseudogene	53.40161	53.42457	negative	MGI_C57BL6J_5663608	Gm43471	NCBI_Gene:108168853,ENSEMBL:ENSMUSG00000105397	MGI:5663608	pseudogene	predicted gene 43471
3	gene	53.44858	53.46333	negative	MGI_C57BL6J_2444520	Nhlrc3	NCBI_Gene:212114,ENSEMBL:ENSMUSG00000042997	MGI:2444520	protein coding gene	NHL repeat containing 3
3	gene	53.45262	53.45805	positive	MGI_C57BL6J_3801870	Gm16206	NCBI_Gene:102632669,ENSEMBL:ENSMUSG00000085174	MGI:3801870	lncRNA gene	predicted gene 16206
3	gene	53.46367	53.48175	positive	MGI_C57BL6J_1919933	Proser1	NCBI_Gene:212127,ENSEMBL:ENSMUSG00000049504	MGI:1919933	protein coding gene	proline and serine rich 1
3	gene	53.48865	53.50850	positive	MGI_C57BL6J_2388072	Stoml3	NCBI_Gene:229277,ENSEMBL:ENSMUSG00000027744	MGI:2388072	protein coding gene	stomatin (Epb7.2)-like 3
3	gene	53.50893	53.51010	positive	MGI_C57BL6J_1924132	6430500D05Rik	ENSEMBL:ENSMUSG00000105481	MGI:1924132	unclassified gene	RIKEN cDNA 6430500D05 gene
3	gene	53.51200	53.51213	positive	MGI_C57BL6J_5453452	Gm23675	ENSEMBL:ENSMUSG00000087936	MGI:5453452	snoRNA gene	predicted gene, 23675
3	gene	53.51394	53.65736	negative	MGI_C57BL6J_2444465	Frem2	NCBI_Gene:242022,ENSEMBL:ENSMUSG00000037016	MGI:2444465	protein coding gene	Fras1 related extracellular matrix protein 2
3	pseudogene	53.66666	53.66739	negative	MGI_C57BL6J_3648425	Gm6073	NCBI_Gene:606547,ENSEMBL:ENSMUSG00000105840	MGI:3648425	pseudogene	predicted gene 6073
3	pseudogene	53.69237	53.69292	negative	MGI_C57BL6J_3649038	Gm6204	NCBI_Gene:621155,ENSEMBL:ENSMUSG00000105879	MGI:3649038	pseudogene	predicted gene 6204
3	gene	53.70304	53.73576	positive	MGI_C57BL6J_5589894	Gm30735	NCBI_Gene:102632743,ENSEMBL:ENSMUSG00000105168	MGI:5589894	lncRNA gene	predicted gene, 30735
3	gene	53.73622	53.73783	positive	MGI_C57BL6J_3642187	Gm10727	ENSEMBL:ENSMUSG00000105444	MGI:3642187	unclassified gene	predicted gene 10727
3	gene	53.75673	53.77295	positive	MGI_C57BL6J_2443105	C820005J03Rik	ENSEMBL:ENSMUSG00000106270	MGI:2443105	lncRNA gene	RIKEN cDNA C820005J03 gene
3	gene	53.84341	53.84351	positive	MGI_C57BL6J_5454628	Gm24851	ENSEMBL:ENSMUSG00000088653	MGI:5454628	snRNA gene	predicted gene, 24851
3	gene	53.84509	53.84528	positive	MGI_C57BL6J_3779200	Gm10985	ENSEMBL:ENSMUSG00000078742	MGI:3779200	protein coding gene	predicted gene 10985
3	gene	53.85338	53.86383	negative	MGI_C57BL6J_1915140	Ufm1	NCBI_Gene:67890,ENSEMBL:ENSMUSG00000027746	MGI:1915140	protein coding gene	ubiquitin-fold modifier 1
3	gene	53.92484	53.94353	positive	MGI_C57BL6J_5590185	Gm31026	NCBI_Gene:102633119,ENSEMBL:ENSMUSG00000106577	MGI:5590185	lncRNA gene	predicted gene, 31026
3	pseudogene	54.02115	54.02195	positive	MGI_C57BL6J_3645533	Gm8109	NCBI_Gene:666444,ENSEMBL:ENSMUSG00000103155	MGI:3645533	pseudogene	predicted gene 8109
3	pseudogene	54.02988	54.03041	positive	MGI_C57BL6J_5010203	Gm18018	NCBI_Gene:100416282,ENSEMBL:ENSMUSG00000105067	MGI:5010203	pseudogene	predicted gene, 18018
3	gene	54.15604	54.31847	positive	MGI_C57BL6J_109525	Trpc4	NCBI_Gene:22066,ENSEMBL:ENSMUSG00000027748	MGI:109525	protein coding gene	transient receptor potential cation channel, subfamily C, member 4
3	gene	54.35927	54.39104	positive	MGI_C57BL6J_1926321	Postn	NCBI_Gene:50706,ENSEMBL:ENSMUSG00000027750	MGI:1926321	protein coding gene	periostin, osteoblast specific factor
3	gene	54.35966	54.36101	negative	MGI_C57BL6J_5590254	Gm31095	NCBI_Gene:102633208	MGI:5590254	lncRNA gene	predicted gene, 31095
3	pseudogene	54.48141	54.48293	positive	MGI_C57BL6J_3645731	Gm5641	NCBI_Gene:434807,ENSEMBL:ENSMUSG00000069014	MGI:3645731	pseudogene	predicted gene 5641
3	gene	54.48856	54.53489	negative	MGI_C57BL6J_5590313	Gm31154	NCBI_Gene:102633293	MGI:5590313	lncRNA gene	predicted gene, 31154
3	gene	54.59055	54.60139	negative	MGI_C57BL6J_5622935	Gm40050	NCBI_Gene:105244443	MGI:5622935	lncRNA gene	predicted gene, 40050
3	gene	54.63144	54.63463	positive	MGI_C57BL6J_5477172	Gm26678	ENSEMBL:ENSMUSG00000097599	MGI:5477172	lncRNA gene	predicted gene, 26678
3	pseudogene	54.63288	54.63457	negative	MGI_C57BL6J_3588285	B020017C02Rik	NCBI_Gene:100503708,ENSEMBL:ENSMUSG00000104831	MGI:3588285	pseudogene	RIKEN cDNA B020017C02 gene
3	gene	54.69276	54.72877	positive	MGI_C57BL6J_1929651	Supt20	NCBI_Gene:56790,ENSEMBL:ENSMUSG00000027751	MGI:1929651	protein coding gene	SPT20 SAGA complex component
3	gene	54.71318	54.71435	negative	MGI_C57BL6J_5439427	Gm21958	ENSEMBL:ENSMUSG00000094487	MGI:5439427	protein coding gene	predicted gene, 21958
3	gene	54.72868	54.73539	negative	MGI_C57BL6J_1916889	Exosc8	NCBI_Gene:69639,ENSEMBL:ENSMUSG00000027752	MGI:1916889	protein coding gene	exosome component 8
3	gene	54.73554	54.75132	positive	MGI_C57BL6J_1913498	Alg5	NCBI_Gene:66248,ENSEMBL:ENSMUSG00000036632	MGI:1913498	protein coding gene	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)
3	gene	54.75545	54.80166	positive	MGI_C57BL6J_1859993	Smad9	NCBI_Gene:55994,ENSEMBL:ENSMUSG00000027796	MGI:1859993	protein coding gene	SMAD family member 9
3	gene	54.80311	54.80779	negative	MGI_C57BL6J_2180854	Rfxap	NCBI_Gene:170767,ENSEMBL:ENSMUSG00000036615	MGI:2180854	protein coding gene	regulatory factor X-associated protein
3	pseudogene	54.80997	54.81140	negative	MGI_C57BL6J_3708673	Gm10254	NCBI_Gene:545524,ENSEMBL:ENSMUSG00000069011	MGI:3708673	pseudogene	predicted gene 10254
3	gene	54.89707	54.91589	negative	MGI_C57BL6J_3607715	Sertm1	NCBI_Gene:329641,ENSEMBL:ENSMUSG00000056306	MGI:3607715	protein coding gene	serine rich and transmembrane domain containing 1
3	gene	54.91602	54.95326	positive	MGI_C57BL6J_5590517	Gm31358	NCBI_Gene:102633562	MGI:5590517	lncRNA gene	predicted gene, 31358
3	gene	55.04547	55.05550	negative	MGI_C57BL6J_108042	Ccna1	NCBI_Gene:12427,ENSEMBL:ENSMUSG00000027793	MGI:108042	protein coding gene	cyclin A1
3	gene	55.05524	55.08400	positive	MGI_C57BL6J_1918220	4931419H13Rik	NCBI_Gene:70970,ENSEMBL:ENSMUSG00000106589	MGI:1918220	lncRNA gene	RIKEN cDNA 4931419H13 gene
3	pseudogene	55.05735	55.05766	negative	MGI_C57BL6J_5663692	Gm43555	ENSEMBL:ENSMUSG00000105977	MGI:5663692	pseudogene	predicted gene 43555
3	gene	55.11207	55.13733	positive	MGI_C57BL6J_2139806	Spg20	NCBI_Gene:229285,ENSEMBL:ENSMUSG00000036580	MGI:2139806	protein coding gene	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
3	gene	55.13734	55.17525	positive	MGI_C57BL6J_2444356	Ccdc169	NCBI_Gene:320604,ENSEMBL:ENSMUSG00000048655	MGI:2444356	protein coding gene	coiled-coil domain containing 169
3	gene	55.16231	55.16243	negative	MGI_C57BL6J_5451806	Gm22029	ENSEMBL:ENSMUSG00000080590	MGI:5451806	miRNA gene	predicted gene, 22029
3	gene	55.18203	55.20996	positive	MGI_C57BL6J_1921684	Sohlh2	NCBI_Gene:74434,ENSEMBL:ENSMUSG00000027794	MGI:1921684	protein coding gene	spermatogenesis and oogenesis specific basic helix-loop-helix 2
3	gene	55.24236	55.53907	positive	MGI_C57BL6J_1330861	Dclk1	NCBI_Gene:13175,ENSEMBL:ENSMUSG00000027797	MGI:1330861	protein coding gene	doublecortin-like kinase 1
3	gene	55.29094	55.29194	positive	MGI_C57BL6J_1924494	9430012M22Rik	NA	NA	unclassified gene	RIKEN cDNA 9430012M22 gene
3	gene	55.30532	55.30542	positive	MGI_C57BL6J_5454909	Gm25132	ENSEMBL:ENSMUSG00000064586	MGI:5454909	snRNA gene	predicted gene, 25132
3	gene	55.33084	55.33297	positive	MGI_C57BL6J_5012002	Gm19817	ENSEMBL:ENSMUSG00000105302	MGI:5012002	unclassified gene	predicted gene, 19817
3	gene	55.35240	55.38079	negative	MGI_C57BL6J_5622936	Gm40051	NCBI_Gene:105244444	MGI:5622936	lncRNA gene	predicted gene, 40051
3	gene	55.37746	55.40312	negative	MGI_C57BL6J_5662746	Gm42609	ENSEMBL:ENSMUSG00000105975	MGI:5662746	lncRNA gene	predicted gene 42609
3	gene	55.39181	55.40420	negative	MGI_C57BL6J_3642047	Gm9831	NCBI_Gene:101056032	MGI:3642047	protein coding gene	predicted gene 9831
3	gene	55.46198	55.47221	negative	MGI_C57BL6J_5439423	Gm21954	ENSEMBL:ENSMUSG00000094962	MGI:5439423	protein coding gene	predicted gene, 21954
3	gene	55.47609	55.48162	negative	MGI_C57BL6J_5590602	Gm31443	NCBI_Gene:102633676	MGI:5590602	lncRNA gene	predicted gene, 31443
3	gene	55.48379	55.48718	positive	MGI_C57BL6J_5662744	Gm42607	ENSEMBL:ENSMUSG00000106354	MGI:5662744	unclassified gene	predicted gene 42607
3	gene	55.51757	55.51959	positive	MGI_C57BL6J_5662745	Gm42608	ENSEMBL:ENSMUSG00000106651	MGI:5662745	unclassified gene	predicted gene 42608
3	gene	55.54045	55.54338	negative	MGI_C57BL6J_5590955	Gm31796	NCBI_Gene:102634140	MGI:5590955	lncRNA gene	predicted gene, 31796
3	gene	55.54354	55.54855	positive	MGI_C57BL6J_5455181	Gm25404	NCBI_Gene:102634218,ENSEMBL:ENSMUSG00000064904	MGI:5455181	snRNA gene	predicted gene, 25404
3	gene	55.57492	55.57727	positive	MGI_C57BL6J_5663685	Gm43548	ENSEMBL:ENSMUSG00000105627	MGI:5663685	unclassified gene	predicted gene 43548
3	gene	55.57811	55.58273	negative	MGI_C57BL6J_5663686	Gm43549	NCBI_Gene:108168870,ENSEMBL:ENSMUSG00000106334	MGI:5663686	lncRNA gene	predicted gene 43549
3	gene	55.62519	56.18427	negative	MGI_C57BL6J_1347075	Nbea	NCBI_Gene:26422,ENSEMBL:ENSMUSG00000027799	MGI:1347075	protein coding gene	neurobeachin
3	gene	55.70589	55.71565	positive	MGI_C57BL6J_5826441	Gm46804	NCBI_Gene:108168871	MGI:5826441	lncRNA gene	predicted gene, 46804
3	gene	55.72593	55.72844	negative	MGI_C57BL6J_3609650	D430004P15Rik	NA	NA	unclassified gene	Riken cDNA D430004P15 gene
3	gene	55.77534	55.78795	negative	MGI_C57BL6J_3698047	9630024C22Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 9630024C22 gene
3	gene	55.78251	55.78529	positive	MGI_C57BL6J_1333773	Mab21l1	NCBI_Gene:17116,ENSEMBL:ENSMUSG00000056947	MGI:1333773	protein coding gene	mab-21-like 1
3	gene	55.83367	55.83446	negative	MGI_C57BL6J_1924979	6720451E02Rik	NA	NA	unclassified gene	RIKEN cDNA 6720451E02 gene
3	pseudogene	55.84710	55.84840	positive	MGI_C57BL6J_1918432	4933417G07Rik	NCBI_Gene:71182,ENSEMBL:ENSMUSG00000106572	MGI:1918432	pseudogene	RIKEN cDNA 4933417G07 gene
3	gene	55.85525	55.85615	negative	MGI_C57BL6J_1926125	B230206L23Rik	NA	NA	unclassified gene	RIKEN cDNA B230206L23 gene
3	gene	55.88327	56.00032	positive	MGI_C57BL6J_5591073	Gm31914	NCBI_Gene:102634293	MGI:5591073	lncRNA gene	predicted gene, 31914
3	gene	55.89031	55.93670	positive	MGI_C57BL6J_5663513	Gm43376	ENSEMBL:ENSMUSG00000104677	MGI:5663513	lncRNA gene	predicted gene 43376
3	gene	55.95678	55.95691	negative	MGI_C57BL6J_5452561	Gm22784	ENSEMBL:ENSMUSG00000077276	MGI:5452561	snoRNA gene	predicted gene, 22784
3	gene	56.01492	56.01717	negative	MGI_C57BL6J_5662977	Gm42840	ENSEMBL:ENSMUSG00000104938	MGI:5662977	unclassified gene	predicted gene 42840
3	gene	56.12316	56.12616	negative	MGI_C57BL6J_5662979	Gm42842	ENSEMBL:ENSMUSG00000106211	MGI:5662979	unclassified gene	predicted gene 42842
3	gene	56.12860	56.13053	negative	MGI_C57BL6J_5662978	Gm42841	ENSEMBL:ENSMUSG00000106528	MGI:5662978	unclassified gene	predicted gene 42841
3	gene	56.16395	56.16757	negative	MGI_C57BL6J_5662980	Gm42843	ENSEMBL:ENSMUSG00000105293	MGI:5662980	unclassified gene	predicted gene 42843
3	gene	56.21791	56.22124	negative	MGI_C57BL6J_5622937	Gm40052	NCBI_Gene:105244445	MGI:5622937	lncRNA gene	predicted gene, 40052
3	gene	56.25590	56.26994	negative	MGI_C57BL6J_5622938	Gm40053	NCBI_Gene:105244446	MGI:5622938	lncRNA gene	predicted gene, 40053
3	gene	56.34703	56.35755	negative	MGI_C57BL6J_5622939	Gm40054	NCBI_Gene:105244447	MGI:5622939	lncRNA gene	predicted gene, 40054
3	gene	56.35224	56.35230	positive	MGI_C57BL6J_102792	Mcptl	NA	NA	protein coding gene	mast cell protease-like
3	gene	56.43600	56.43875	negative	MGI_C57BL6J_5591336	Gm32177	NCBI_Gene:102634641	MGI:5591336	lncRNA gene	predicted gene, 32177
3	gene	56.44528	56.44541	negative	MGI_C57BL6J_5455504	Gm25727	ENSEMBL:ENSMUSG00000077710	MGI:5455504	snoRNA gene	predicted gene, 25727
3	gene	56.69842	56.70506	positive	MGI_C57BL6J_5591396	Gm32237	NCBI_Gene:102634719	MGI:5591396	lncRNA gene	predicted gene, 32237
3	pseudogene	56.82832	56.82884	negative	MGI_C57BL6J_3780790	Gm2622	NCBI_Gene:100040139,ENSEMBL:ENSMUSG00000105113	MGI:3780790	pseudogene	predicted gene 2622
3	gene	56.88806	56.89133	negative	MGI_C57BL6J_3588185	F830104G03Rik	NA	NA	unclassified gene	RIKEN cDNA F830104G03 gene
3	gene	57.05415	57.05428	positive	MGI_C57BL6J_5452046	Gm22269	ENSEMBL:ENSMUSG00000077190	MGI:5452046	snoRNA gene	predicted gene, 22269
3	pseudogene	57.13549	57.13683	negative	MGI_C57BL6J_3805962	Gm8177	NCBI_Gene:666585,ENSEMBL:ENSMUSG00000097366	MGI:3805962	pseudogene	predicted gene 8177
3	gene	57.22772	57.22918	negative	MGI_C57BL6J_1918389	4933408K01Rik	NA	NA	unclassified gene	RIKEN cDNA 4933408K01 gene
3	pseudogene	57.24925	57.24950	positive	MGI_C57BL6J_5663561	Gm43424	ENSEMBL:ENSMUSG00000106286	MGI:5663561	pseudogene	predicted gene 43424
3	pseudogene	57.27174	57.27237	negative	MGI_C57BL6J_5010845	Gm18660	NCBI_Gene:100417512,ENSEMBL:ENSMUSG00000104534	MGI:5010845	pseudogene	predicted gene, 18660
3	gene	57.28561	57.30199	negative	MGI_C57BL6J_104678	Tm4sf1	NCBI_Gene:17112,ENSEMBL:ENSMUSG00000027800	MGI:104678	protein coding gene	transmembrane 4 superfamily member 1
3	pseudogene	57.36225	57.36361	positive	MGI_C57BL6J_3646382	Gm5276	NCBI_Gene:383862,ENSEMBL:ENSMUSG00000105452	MGI:3646382	pseudogene	predicted gene 5276
3	gene	57.37929	57.39455	negative	MGI_C57BL6J_5591526	Gm32367	NCBI_Gene:102634892	MGI:5591526	lncRNA gene	predicted gene, 32367
3	gene	57.42531	57.44168	positive	MGI_C57BL6J_2385173	Tm4sf4	NCBI_Gene:229302,ENSEMBL:ENSMUSG00000027801	MGI:2385173	protein coding gene	transmembrane 4 superfamily member 4
3	gene	57.45564	57.57591	negative	MGI_C57BL6J_1917649	Wwtr1	NCBI_Gene:97064,ENSEMBL:ENSMUSG00000027803	MGI:1917649	protein coding gene	WW domain containing transcription regulator 1
3	pseudogene	57.52655	57.53048	positive	MGI_C57BL6J_3802068	Gm16016	NCBI_Gene:105244448,ENSEMBL:ENSMUSG00000083538	MGI:3802068	pseudogene	predicted gene 16016

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	57.95198	58.03171	negative	MGI_C57BL6J_5622940	Gm40055	NCBI_Gene:105244449,ENSEMBL:ENSMUSG00000105003	MGI:5622940	lncRNA gene	predicted gene, 40055
3	gene	58.07972	58.08183	positive	MGI_C57BL6J_5662650	Gm42513	ENSEMBL:ENSMUSG00000105065	MGI:5662650	unclassified gene	predicted gene 42513
3	gene	58.08960	58.16235	positive	MGI_C57BL6J_5622941	Gm40056	NCBI_Gene:105244450	MGI:5622941	lncRNA gene	predicted gene, 40056
3	pseudogene	58.10256	58.10430	negative	MGI_C57BL6J_3643179	Gm5537	NCBI_Gene:433594,ENSEMBL:ENSMUSG00000069008	MGI:3643179	pseudogene	predicted gene 5537
3	gene	58.11705	58.16762	positive	MGI_C57BL6J_1925506	4921539H07Rik	ENSEMBL:ENSMUSG00000104586	MGI:1925506	lncRNA gene	RIKEN cDNA 4921539H07 gene
3	gene	58.14171	58.16381	negative	MGI_C57BL6J_1915100	1700007F19Rik	NCBI_Gene:67850,ENSEMBL:ENSMUSG00000100666	MGI:1915100	lncRNA gene	RIKEN cDNA 1700007F19 gene
3	gene	58.21192	58.21337	positive	MGI_C57BL6J_5622942	Gm40057	NCBI_Gene:105244451	MGI:5622942	lncRNA gene	predicted gene, 40057
3	gene	58.29025	58.29036	negative	MGI_C57BL6J_5455943	Gm26166	ENSEMBL:ENSMUSG00000065722	MGI:5455943	snRNA gene	predicted gene, 26166
3	gene	58.30186	58.31762	positive	MGI_C57BL6J_5592006	Gm32847	NCBI_Gene:102635539	MGI:5592006	lncRNA gene	predicted gene, 32847
3	pseudogene	58.31494	58.31531	negative	MGI_C57BL6J_5663867	Gm43730	ENSEMBL:ENSMUSG00000106176	MGI:5663867	pseudogene	predicted gene 43730
3	pseudogene	58.40465	58.40512	positive	MGI_C57BL6J_5012313	Gm20128	NCBI_Gene:100504238,ENSEMBL:ENSMUSG00000105154	MGI:5012313	pseudogene	predicted gene, 20128
3	gene	58.41472	58.46679	positive	MGI_C57BL6J_1919283	Tsc22d2	NCBI_Gene:72033,ENSEMBL:ENSMUSG00000027806	MGI:1919283	protein coding gene	TSC22 domain family, member 2
3	gene	58.43268	58.43301	positive	MGI_C57BL6J_1338064	Gdap9	NA	NA	unclassified gene	ganglioside-induced differentiation-associated-protein 9
3	gene	58.51982	58.52589	negative	MGI_C57BL6J_92638	Serp1	NCBI_Gene:28146,ENSEMBL:ENSMUSG00000027808	MGI:92638	protein coding gene	stress-associated endoplasmic reticulum protein 1
3	gene	58.52582	58.55750	positive	MGI_C57BL6J_1098684	Eif2a	NCBI_Gene:229317,ENSEMBL:ENSMUSG00000027810	MGI:1098684	protein coding gene	eukaryotic translation initiation factor 2A
3	gene	58.52693	58.52812	positive	MGI_C57BL6J_1925148	6720482G16Rik	ENSEMBL:ENSMUSG00000106553	MGI:1925148	unclassified gene	RIKEN cDNA 6720482G16 gene
3	gene	58.57664	58.59354	positive	MGI_C57BL6J_1916477	Selenot	NCBI_Gene:69227,ENSEMBL:ENSMUSG00000075700	MGI:1916477	protein coding gene	selenoprotein T
3	gene	58.61630	58.63721	negative	MGI_C57BL6J_3588212	Erich6	NCBI_Gene:545527,ENSEMBL:ENSMUSG00000070471	MGI:3588212	protein coding gene	glutamate rich 6
3	gene	58.63671	58.63749	positive	MGI_C57BL6J_5826443	Gm46806	NCBI_Gene:108168873	MGI:5826443	lncRNA gene	predicted gene, 46806
3	pseudogene	58.65204	58.65404	positive	MGI_C57BL6J_3779790	Gm8234	NCBI_Gene:666680,ENSEMBL:ENSMUSG00000105021	MGI:3779790	pseudogene	predicted gene 8234
3	pseudogene	58.66547	58.66664	negative	MGI_C57BL6J_2139888	AU022133	NCBI_Gene:100417266,ENSEMBL:ENSMUSG00000105336	MGI:2139888	pseudogene	expressed sequence AU022133
3	gene	58.67494	58.69244	negative	MGI_C57BL6J_108062	Siah2	NCBI_Gene:20439,ENSEMBL:ENSMUSG00000036432	MGI:108062	protein coding gene	siah E3 ubiquitin protein ligase 2
3	gene	58.69259	58.79733	positive	MGI_C57BL6J_1923132	4930593A02Rik	NCBI_Gene:71301,ENSEMBL:ENSMUSG00000097725	MGI:1923132	lncRNA gene	RIKEN cDNA 4930593A02 gene
3	gene	58.69756	58.69867	positive	MGI_C57BL6J_1925070	A930028O11Rik	ENSEMBL:ENSMUSG00000105226	MGI:1925070	unclassified gene	RIKEN cDNA A930028O11 gene
3	pseudogene	58.76149	58.76275	negative	MGI_C57BL6J_5592251	Gm33092	NCBI_Gene:102635856	MGI:5592251	pseudogene	predicted gene, 33092
3	pseudogene	58.78841	58.82231	negative	MGI_C57BL6J_2140018	Mindy4b-ps	NCBI_Gene:100040293,ENSEMBL:ENSMUSG00000101860	MGI:2140018	pseudogene	MINDY lysine 48 deubiquitinase 4B, pseudogene
3	gene	58.82499	58.83590	positive	MGI_C57BL6J_5622944	Gm40059	NCBI_Gene:105244453	MGI:5622944	lncRNA gene	predicted gene, 40059
3	gene	58.84210	58.86675	positive	MGI_C57BL6J_5622945	Gm40060	NCBI_Gene:105244454	MGI:5622945	lncRNA gene	predicted gene, 40060
3	gene	58.84403	58.88534	negative	MGI_C57BL6J_2388124	Clrn1	NCBI_Gene:229320,ENSEMBL:ENSMUSG00000043850	MGI:2388124	protein coding gene	clarin 1
3	gene	58.97563	58.97573	positive	MGI_C57BL6J_5452268	Gm22491	ENSEMBL:ENSMUSG00000087815	MGI:5452268	snRNA gene	predicted gene, 22491
3	gene	58.97886	58.97903	negative	MGI_C57BL6J_5455349	Gm25572	ENSEMBL:ENSMUSG00000088152	MGI:5455349	snRNA gene	predicted gene, 25572
3	pseudogene	58.98713	58.98786	positive	MGI_C57BL6J_3642685	Rpl13-ps6	NCBI_Gene:100040416,ENSEMBL:ENSMUSG00000059776	MGI:3642685	pseudogene	ribosomal protein L13, pseudogene 6
3	gene	59.00162	59.00169	positive	MGI_C57BL6J_5531175	Gm27793	ENSEMBL:ENSMUSG00000099052	MGI:5531175	unclassified non-coding RNA gene	predicted gene, 27793
3	gene	59.00247	59.00616	negative	MGI_C57BL6J_5663707	Gm43570	ENSEMBL:ENSMUSG00000105945	MGI:5663707	lncRNA gene	predicted gene 43570
3	gene	59.00559	59.31868	positive	MGI_C57BL6J_2139916	Med12l	NCBI_Gene:329650,ENSEMBL:ENSMUSG00000056476	MGI:2139916	protein coding gene	mediator complex subunit 12-like
3	gene	59.09645	59.10182	negative	MGI_C57BL6J_2442043	Gpr171	NCBI_Gene:229323,ENSEMBL:ENSMUSG00000050075	MGI:2442043	protein coding gene	G protein-coupled receptor 171
3	gene	59.11386	59.15362	negative	MGI_C57BL6J_2155705	P2ry14	NCBI_Gene:140795,ENSEMBL:ENSMUSG00000036381	MGI:2155705	protein coding gene	purinergic receptor P2Y, G-protein coupled, 14
3	gene	59.14630	59.15363	negative	MGI_C57BL6J_2444074	F630111L10Rik	NCBI_Gene:320463	MGI:2444074	lncRNA gene	RIKEN cDNA F630111L10 gene
3	gene	59.17890	59.19547	negative	MGI_C57BL6J_1934133	Gpr87	NCBI_Gene:84111,ENSEMBL:ENSMUSG00000051431	MGI:1934133	protein coding gene	G protein-coupled receptor 87
3	gene	59.20789	59.21088	negative	MGI_C57BL6J_1921441	P2ry13	NCBI_Gene:74191,ENSEMBL:ENSMUSG00000036362	MGI:1921441	protein coding gene	purinergic receptor P2Y, G-protein coupled 13
3	gene	59.21627	59.26301	negative	MGI_C57BL6J_1918089	P2ry12	NCBI_Gene:70839,ENSEMBL:ENSMUSG00000036353	MGI:1918089	protein coding gene	purinergic receptor P2Y, G-protein coupled 12
3	gene	59.26979	59.27131	positive	MGI_C57BL6J_5663726	Gm43589	ENSEMBL:ENSMUSG00000104550	MGI:5663726	unclassified gene	predicted gene 43589
3	gene	59.31674	59.34444	negative	MGI_C57BL6J_1923481	Igsf10	NCBI_Gene:242050,ENSEMBL:ENSMUSG00000036334	MGI:1923481	protein coding gene	immunoglobulin superfamily, member 10
3	gene	59.34427	59.35117	positive	MGI_C57BL6J_5611414	Gm38186	ENSEMBL:ENSMUSG00000103668	MGI:5611414	lncRNA gene	predicted gene, 38186
3	pseudogene	59.42453	59.42476	positive	MGI_C57BL6J_5610943	Gm37715	ENSEMBL:ENSMUSG00000102247	MGI:5610943	pseudogene	predicted gene, 37715
3	pseudogene	59.43154	59.43335	positive	MGI_C57BL6J_3648019	Gm8276	NCBI_Gene:666756,ENSEMBL:ENSMUSG00000102550	MGI:3648019	pseudogene	predicted gene 8276
3	pseudogene	59.46967	59.47409	negative	MGI_C57BL6J_5611516	Gm38288	ENSEMBL:ENSMUSG00000103211	MGI:5611516	pseudogene	predicted gene, 38288
3	gene	59.47493	59.47500	negative	MGI_C57BL6J_4414092	n-TVcac1	NCBI_Gene:102467620	MGI:4414092	tRNA gene	nuclear encoded tRNA valine 1 (anticodon CAC)
3	pseudogene	59.48302	59.48329	positive	MGI_C57BL6J_5610999	Gm37771	ENSEMBL:ENSMUSG00000104038	MGI:5610999	pseudogene	predicted gene, 37771
3	pseudogene	59.50558	59.53523	negative	MGI_C57BL6J_3644725	Gm4856	NCBI_Gene:229330,ENSEMBL:ENSMUSG00000103598	MGI:3644725	pseudogene	predicted gene 4856
3	pseudogene	59.60245	59.63576	negative	MGI_C57BL6J_3644280	Gm5709	NCBI_Gene:435732,ENSEMBL:ENSMUSG00000095128	MGI:3644280	pseudogene	predicted gene 5709
3	gene	59.66286	59.66528	positive	MGI_C57BL6J_5611154	Gm37926	ENSEMBL:ENSMUSG00000102480	MGI:5611154	unclassified gene	predicted gene, 37926
3	gene	59.72979	59.75240	positive	MGI_C57BL6J_3779495	Aadacl2fm2	NCBI_Gene:433597,ENSEMBL:ENSMUSG00000090527	MGI:3779495	protein coding gene	AADACL2 family member 2
3	pseudogene	59.73675	59.73686	negative	MGI_C57BL6J_5611436	Gm38208	ENSEMBL:ENSMUSG00000104471	MGI:5611436	pseudogene	predicted gene, 38208
3	pseudogene	59.73718	59.73732	negative	MGI_C57BL6J_5610807	Gm37579	ENSEMBL:ENSMUSG00000102390	MGI:5610807	pseudogene	predicted gene, 37579
3	pseudogene	59.76721	59.76891	positive	MGI_C57BL6J_3644451	Gm5539	NCBI_Gene:433598,ENSEMBL:ENSMUSG00000103986	MGI:3644451	pseudogene	predicted gene 5539
3	gene	59.77781	59.84682	positive	MGI_C57BL6J_1921922	4930449A18Rik	ENSEMBL:ENSMUSG00000074589	MGI:1921922	protein coding gene	RIKEN cDNA 4930449A18 gene
3	pseudogene	59.78322	59.78863	negative	MGI_C57BL6J_3780925	Gm2756	NCBI_Gene:100040407,ENSEMBL:ENSMUSG00000102757	MGI:3780925	pseudogene	predicted gene 2756
3	gene	59.83837	59.84682	positive	MGI_C57BL6J_4361133	Gm16527	NCBI_Gene:669780	MGI:4361133	protein coding gene	predicted gene, 16527
3	gene	59.86105	59.87731	positive	MGI_C57BL6J_3643798	Aadacl2fm3	NCBI_Gene:666803,ENSEMBL:ENSMUSG00000095522	MGI:3643798	protein coding gene	AADACL2 family member 3
3	gene	59.92521	59.93795	positive	MGI_C57BL6J_3028051	Aadacl2fm1	NCBI_Gene:229333,ENSEMBL:ENSMUSG00000036951	MGI:3028051	protein coding gene	AADACL2 family member 1
3	pseudogene	59.95231	59.97359	positive	MGI_C57BL6J_3819177	Gm9696	NCBI_Gene:676914,ENSEMBL:ENSMUSG00000070465	MGI:3819177	pseudogene	predicted gene 9696
3	gene	60.00674	60.02542	positive	MGI_C57BL6J_3646333	Aadacl2	NCBI_Gene:639634,ENSEMBL:ENSMUSG00000091376	MGI:3646333	protein coding gene	arylacetamide deacetylase like 2
3	pseudogene	60.02036	60.02087	negative	MGI_C57BL6J_5010612	Gm18427	NCBI_Gene:100417154,ENSEMBL:ENSMUSG00000103177	MGI:5010612	pseudogene	predicted gene, 18427
3	gene	60.02572	60.04016	positive	MGI_C57BL6J_1915008	Aadac	NCBI_Gene:67758,ENSEMBL:ENSMUSG00000027761	MGI:1915008	protein coding gene	arylacetamide deacetylase
3	gene	60.08187	60.08757	positive	MGI_C57BL6J_1934135	Sucnr1	NCBI_Gene:84112,ENSEMBL:ENSMUSG00000027762	MGI:1934135	protein coding gene	succinate receptor 1
3	gene	60.12764	60.12775	negative	MGI_C57BL6J_5454159	Gm24382	ENSEMBL:ENSMUSG00000084647	MGI:5454159	snRNA gene	predicted gene, 24382
3	gene	60.29342	60.30941	negative	MGI_C57BL6J_5592809	Gm33650	NCBI_Gene:102636642	MGI:5592809	lncRNA gene	predicted gene, 33650
3	pseudogene	60.34219	60.34309	negative	MGI_C57BL6J_3779880	Tgif1-ps	NCBI_Gene:669823,ENSEMBL:ENSMUSG00000107270	MGI:3779880	pseudogene	TGFB-induced factor homeobox 1, pseudogene
3	gene	60.47279	60.62975	positive	MGI_C57BL6J_1928482	Mbnl1	NCBI_Gene:56758,ENSEMBL:ENSMUSG00000027763	MGI:1928482	protein coding gene	muscleblind like splicing factor 1
3	gene	60.53575	60.53974	positive	MGI_C57BL6J_5610817	Gm37589	ENSEMBL:ENSMUSG00000104235	MGI:5610817	unclassified gene	predicted gene, 37589
3	gene	60.57770	60.58136	positive	MGI_C57BL6J_5012001	Gm19816	NA	NA	unclassified gene	predicted gene%2c 19816
3	gene	60.60438	60.60776	positive	MGI_C57BL6J_5610716	Gm37488	ENSEMBL:ENSMUSG00000104125	MGI:5610716	unclassified gene	predicted gene, 37488
3	pseudogene	60.73763	60.73779	negative	MGI_C57BL6J_5611508	Gm38280	ENSEMBL:ENSMUSG00000104337	MGI:5611508	pseudogene	predicted gene, 38280
3	pseudogene	60.76958	60.77164	negative	MGI_C57BL6J_5592866	Gm33707	NCBI_Gene:102636711,ENSEMBL:ENSMUSG00000102298	MGI:5592866	pseudogene	predicted gene, 33707
3	gene	60.78148	61.00379	negative	MGI_C57BL6J_5610263	Gm37035	NCBI_Gene:105244455,ENSEMBL:ENSMUSG00000102564	MGI:5610263	lncRNA gene	predicted gene, 37035
3	gene	60.78836	60.79473	positive	MGI_C57BL6J_5611554	Gm38326	NCBI_Gene:102642162,ENSEMBL:ENSMUSG00000103587	MGI:5611554	lncRNA gene	predicted gene, 38326
3	pseudogene	60.86071	60.86109	positive	MGI_C57BL6J_5610213	Gm36985	ENSEMBL:ENSMUSG00000102490	MGI:5610213	pseudogene	predicted gene, 36985
3	pseudogene	60.87700	60.87884	positive	MGI_C57BL6J_3644852	Gm8325	NCBI_Gene:666853,ENSEMBL:ENSMUSG00000027694	MGI:3644852	pseudogene	predicted pseudogene 8325
3	gene	61.00279	61.00898	positive	MGI_C57BL6J_105049	P2ry1	NCBI_Gene:18441,ENSEMBL:ENSMUSG00000027765	MGI:105049	protein coding gene	purinergic receptor P2Y, G-protein coupled 1
3	pseudogene	61.29116	61.29145	negative	MGI_C57BL6J_5610947	Gm37719	ENSEMBL:ENSMUSG00000102242	MGI:5610947	pseudogene	predicted gene, 37719
3	pseudogene	61.32849	61.32923	negative	MGI_C57BL6J_5012086	Gm19901	NCBI_Gene:100503798,ENSEMBL:ENSMUSG00000102667	MGI:5012086	pseudogene	predicted gene, 19901
3	gene	61.35855	61.36190	negative	MGI_C57BL6J_5610924	Gm37696	ENSEMBL:ENSMUSG00000103473	MGI:5610924	lncRNA gene	predicted gene, 37696
3	gene	61.36164	61.36870	positive	MGI_C57BL6J_1921262	Rap2b	NCBI_Gene:74012,ENSEMBL:ENSMUSG00000036894	MGI:1921262	protein coding gene	RAP2B, member of RAS oncogene family
3	gene	61.36225	61.36595	negative	MGI_C57BL6J_3697707	B430305J03Rik	ENSEMBL:ENSMUSG00000053706	MGI:3697707	protein coding gene	RIKEN cDNA B430305J03 gene
3	gene	61.39215	61.41303	positive	MGI_C57BL6J_5622946	Gm40061	NCBI_Gene:105244456	MGI:5622946	lncRNA gene	predicted gene, 40061
3	pseudogene	61.46166	61.46288	negative	MGI_C57BL6J_3643135	Gm8349	NCBI_Gene:666891,ENSEMBL:ENSMUSG00000098208	MGI:3643135	pseudogene	predicted gene 8349
3	pseudogene	62.06754	62.06979	negative	MGI_C57BL6J_3780107	Gm9700	NCBI_Gene:676965,ENSEMBL:ENSMUSG00000104489	MGI:3780107	pseudogene	predicted gene 9700
3	gene	62.12321	62.12356	positive	MGI_C57BL6J_5610632	Gm37404	ENSEMBL:ENSMUSG00000103322	MGI:5610632	unclassified gene	predicted gene, 37404
3	gene	62.33752	62.34053	negative	MGI_C57BL6J_3704218	9330121J05Rik	ENSEMBL:ENSMUSG00000103502	MGI:3704218	lncRNA gene	RIKEN cDNA 9330121J05 gene
3	gene	62.33834	62.46222	positive	MGI_C57BL6J_1918053	Arhgef26	NCBI_Gene:622434,ENSEMBL:ENSMUSG00000036885	MGI:1918053	protein coding gene	Rho guanine nucleotide exchange factor (GEF) 26
3	gene	62.34139	62.35052	negative	MGI_C57BL6J_5593082	Gm33923	NCBI_Gene:102637008	MGI:5593082	lncRNA gene	predicted gene, 33923
3	gene	62.46801	62.50703	negative	MGI_C57BL6J_1919412	Dhx36	NCBI_Gene:72162,ENSEMBL:ENSMUSG00000027770	MGI:1919412	protein coding gene	DEAH (Asp-Glu-Ala-His) box polypeptide 36
3	gene	62.52908	62.60544	negative	MGI_C57BL6J_2443628	Gpr149	NCBI_Gene:229357,ENSEMBL:ENSMUSG00000043441	MGI:2443628	protein coding gene	G protein-coupled receptor 149
3	gene	62.60493	62.76393	positive	MGI_C57BL6J_5593207	Gm34048	NCBI_Gene:102637165	MGI:5593207	lncRNA gene	predicted gene, 34048
3	pseudogene	62.76144	62.76202	positive	MGI_C57BL6J_5010567	Gm18382	NCBI_Gene:100417044,ENSEMBL:ENSMUSG00000103764	MGI:5010567	pseudogene	predicted gene, 18382
3	gene	62.77198	62.86064	positive	MGI_C57BL6J_5622947	Gm40062	NCBI_Gene:105244457	MGI:5622947	lncRNA gene	predicted gene, 40062
3	gene	62.86768	62.88900	positive	MGI_C57BL6J_5622948	Gm40063	NCBI_Gene:105244458	MGI:5622948	lncRNA gene	predicted gene, 40063
3	pseudogene	62.92376	62.92426	negative	MGI_C57BL6J_3780108	Gm9701	NCBI_Gene:676984,ENSEMBL:ENSMUSG00000063001	MGI:3780108	pseudogene	predicted gene 9701
3	gene	63.15222	63.15236	positive	MGI_C57BL6J_5452210	Gm22433	ENSEMBL:ENSMUSG00000089175	MGI:5452210	snoRNA gene	predicted gene, 22433
3	pseudogene	63.17311	63.17386	negative	MGI_C57BL6J_3645001	Gm8388	NCBI_Gene:666967,ENSEMBL:ENSMUSG00000102270	MGI:3645001	pseudogene	predicted gene 8388
3	gene	63.23282	63.24545	negative	MGI_C57BL6J_5622949	Gm40064	NCBI_Gene:105244459	MGI:5622949	lncRNA gene	predicted gene, 40064
3	gene	63.24154	63.38603	positive	MGI_C57BL6J_97004	Mme	NCBI_Gene:17380,ENSEMBL:ENSMUSG00000027820	MGI:97004	protein coding gene	membrane metallo endopeptidase
3	gene	63.43925	63.45790	positive	MGI_C57BL6J_5593399	Gm34240	NCBI_Gene:102637430,ENSEMBL:ENSMUSG00000104336	MGI:5593399	lncRNA gene	predicted gene, 34240
3	gene	63.48110	63.48391	negative	MGI_C57BL6J_5593461	Strit1	NCBI_Gene:102637511,ENSEMBL:ENSMUSG00000103476	MGI:5593461	protein coding gene	small transmembrane regulator of ion transport 1
3	gene	63.48388	63.48437	positive	MGI_C57BL6J_5610507	Gm37279	ENSEMBL:ENSMUSG00000102883	MGI:5610507	unclassified gene	predicted gene, 37279
3	gene	63.48899	63.48910	positive	MGI_C57BL6J_5454723	Gm24946	ENSEMBL:ENSMUSG00000088957	MGI:5454723	snRNA gene	predicted gene, 24946
3	gene	63.69620	63.89972	negative	MGI_C57BL6J_2683547	Plch1	NCBI_Gene:269437,ENSEMBL:ENSMUSG00000036834	MGI:2683547	protein coding gene	phospholipase C, eta 1
3	gene	63.77021	63.77031	positive	MGI_C57BL6J_5453277	Gm23500	ENSEMBL:ENSMUSG00000088360	MGI:5453277	snRNA gene	predicted gene, 23500
3	gene	63.79610	63.83685	positive	MGI_C57BL6J_5826444	Gm46807	NCBI_Gene:108168874	MGI:5826444	lncRNA gene	predicted gene, 46807
3	pseudogene	63.82579	63.82644	positive	MGI_C57BL6J_3802047	Gm16162	ENSEMBL:ENSMUSG00000090131	MGI:3802047	pseudogene	predicted gene 16162
3	pseudogene	63.84312	63.84407	positive	MGI_C57BL6J_3801947	Gm16129	ENSEMBL:ENSMUSG00000085290	MGI:3801947	pseudogene	predicted gene 16129
3	pseudogene	63.90543	63.90573	positive	MGI_C57BL6J_5593538	Gm34379	NCBI_Gene:102637617,ENSEMBL:ENSMUSG00000103905	MGI:5593538	pseudogene	predicted gene, 34379
3	gene	63.91468	63.92947	negative	MGI_C57BL6J_3607716	E130311K13Rik	NCBI_Gene:329659,ENSEMBL:ENSMUSG00000048581	MGI:3607716	protein coding gene	RIKEN cDNA E130311K13 gene
3	gene	63.93351	63.96477	negative	MGI_C57BL6J_1332247	Slc33a1	NCBI_Gene:11416,ENSEMBL:ENSMUSG00000027822	MGI:1332247	protein coding gene	solute carrier family 33 (acetyl-CoA transporter), member 1
3	gene	63.96363	63.96866	positive	MGI_C57BL6J_5477344	Gm26850	ENSEMBL:ENSMUSG00000097724	MGI:5477344	lncRNA gene	predicted gene, 26850
3	gene	63.96482	64.02258	positive	MGI_C57BL6J_2448526	Gmps	NCBI_Gene:229363,ENSEMBL:ENSMUSG00000027823	MGI:2448526	protein coding gene	guanine monophosphate synthetase
3	pseudogene	64.05303	64.05561	negative	MGI_C57BL6J_3757653	Vmn2r-ps3	NCBI_Gene:100124546,ENSEMBL:ENSMUSG00000090303	MGI:3757653	pseudogene	vomeronasal 2, receptor, pseudogene 3
3	gene	64.07977	64.22085	positive	MGI_C57BL6J_3645892	Vmn2r1	NCBI_Gene:56544,ENSEMBL:ENSMUSG00000027824	MGI:3645892	protein coding gene	vomeronasal 2, receptor 1
3	gene	64.10963	64.10974	positive	MGI_C57BL6J_5451942	Gm22165	ENSEMBL:ENSMUSG00000089039	MGI:5451942	snRNA gene	predicted gene, 22165
3	gene	64.11528	64.17092	negative	MGI_C57BL6J_3757666	Vmn2r2	NCBI_Gene:100125586,ENSEMBL:ENSMUSG00000043897	MGI:3757666	protein coding gene	vomeronasal 2, receptor 2
3	pseudogene	64.16339	64.16385	positive	MGI_C57BL6J_3779465	Gm5139	NCBI_Gene:380739,ENSEMBL:ENSMUSG00000093447	MGI:3779465	pseudogene	predicted gene 5139
3	pseudogene	64.19557	64.21368	negative	MGI_C57BL6J_5010479	Gm18294	NCBI_Gene:100416861,ENSEMBL:ENSMUSG00000093416	MGI:5010479	pseudogene	predicted gene, 18294
3	gene	64.23373	64.23546	positive	MGI_C57BL6J_5593621	Gm34462	NCBI_Gene:102637724	MGI:5593621	lncRNA gene	predicted gene, 34462
3	gene	64.25722	64.28971	negative	MGI_C57BL6J_3643995	Vmn2r3	NCBI_Gene:637004,ENSEMBL:ENSMUSG00000091572	MGI:3643995	protein coding gene	vomeronasal 2, receptor 3
3	gene	64.27582	64.27619	negative	MGI_C57BL6J_1345615	Ifld3	NA	NA	unclassified gene	induced in fatty liver dystrophy 3
3	gene	64.31841	64.31856	negative	MGI_C57BL6J_5453674	Gm23897	ENSEMBL:ENSMUSG00000088735	MGI:5453674	snoRNA gene	predicted gene, 23897
3	pseudogene	64.32866	64.33285	positive	MGI_C57BL6J_3757669	Vmn2r-ps4	NCBI_Gene:100124547,ENSEMBL:ENSMUSG00000093503	MGI:3757669	pseudogene	vomeronasal 2, receptor, pseudogene 4
3	pseudogene	64.33956	64.35772	negative	MGI_C57BL6J_3645404	Vmn2r-ps5	NCBI_Gene:667031,ENSEMBL:ENSMUSG00000091967	MGI:3645404	polymorphic pseudogene	vomeronasal 2, receptor, pseudogene 5
3	gene	64.38304	64.41537	negative	MGI_C57BL6J_3648229	Vmn2r4	NCBI_Gene:637053,ENSEMBL:ENSMUSG00000092049	MGI:3648229	protein coding gene	vomeronasal 2, receptor 4
3	pseudogene	64.43688	64.43829	negative	MGI_C57BL6J_3757678	Vmn2r-ps6	NCBI_Gene:100124548,ENSEMBL:ENSMUSG00000093395	MGI:3757678	pseudogene	vomeronasal 2, receptor, pseudogene 6
3	pseudogene	64.44260	64.44397	negative	MGI_C57BL6J_3757679	Vmn2r-ps7	NCBI_Gene:672951,ENSEMBL:ENSMUSG00000093546	MGI:3757679	pseudogene	vomeronasal 2, receptor, pseudogene 7
3	pseudogene	64.44797	64.46009	positive	MGI_C57BL6J_5313103	Gm20656	ENSEMBL:ENSMUSG00000093671	MGI:5313103	pseudogene	predicted gene 20656
3	pseudogene	64.47702	64.47932	positive	MGI_C57BL6J_3757680	Vmn2r-ps8	NCBI_Gene:100124549,ENSEMBL:ENSMUSG00000094482	MGI:3757680	pseudogene	vomeronasal 2, receptor, pseudogene 8
3	gene	64.48861	64.50984	negative	MGI_C57BL6J_3649074	Vmn2r5	NCBI_Gene:667060,ENSEMBL:ENSMUSG00000068999	MGI:3649074	protein coding gene	vomeronasal 2, receptor 5
3	gene	64.53131	64.56583	negative	MGI_C57BL6J_3649068	Vmn2r6	NCBI_Gene:667069,ENSEMBL:ENSMUSG00000090581	MGI:3649068	protein coding gene	vomeronasal 2, receptor 6
3	pseudogene	64.59152	64.59290	negative	MGI_C57BL6J_3757686	Vmn2r-ps9	NCBI_Gene:100124550,ENSEMBL:ENSMUSG00000093699	MGI:3757686	pseudogene	vomeronasal 2, receptor, pseudogene 9
3	pseudogene	64.59691	64.60577	positive	MGI_C57BL6J_5313104	Gm20657	ENSEMBL:ENSMUSG00000093484	MGI:5313104	pseudogene	predicted gene 20657
3	pseudogene	64.60043	64.60114	positive	MGI_C57BL6J_3781218	Gm3040	NCBI_Gene:100416170	MGI:3781218	pseudogene	predicted gene 3040
3	pseudogene	64.62169	64.62399	positive	MGI_C57BL6J_3757943	Vmn2r-ps10	NCBI_Gene:100124554,ENSEMBL:ENSMUSG00000095107	MGI:3757943	pseudogene	vomeronasal 2, receptor, pseudogene 10
3	pseudogene	64.63257	64.84474	negative	MGI_C57BL6J_2441682	Vmn2r-ps11	NCBI_Gene:319210,ENSEMBL:ENSMUSG00000093434	MGI:2441682	pseudogene	vomeronasal 2, receptor, pseudogene 11
3	gene	64.63286	64.84474	negative	MGI_C57BL6J_5504054	Gm26939	ENSEMBL:ENSMUSG00000097538	MGI:5504054	lncRNA gene	predicted gene, 26939
3	gene	64.68504	64.84476	negative	MGI_C57BL6J_2441693	Vmn2r7	NCBI_Gene:319217,ENSEMBL:ENSMUSG00000062200	MGI:2441693	protein coding gene	vomeronasal 2, receptor 7
3	pseudogene	64.74475	64.74564	negative	MGI_C57BL6J_3757944	Vmn2r-ps12	NCBI_Gene:100125273,ENSEMBL:ENSMUSG00000093474	MGI:3757944	pseudogene	vomeronasal 2, receptor, pseudogene 12
3	gene	64.89447	64.89460	negative	MGI_C57BL6J_5454999	Gm25222	ENSEMBL:ENSMUSG00000088824	MGI:5454999	snoRNA gene	predicted gene, 25222
3	pseudogene	64.89885	64.89976	positive	MGI_C57BL6J_3757946	Vmn2r-ps13	NCBI_Gene:670110,ENSEMBL:ENSMUSG00000093767	MGI:3757946	pseudogene	vomeronasal 2, receptor, pseudogene 13
3	gene	64.94905	65.37823	positive	MGI_C57BL6J_109155	Kcnab1	NCBI_Gene:16497,ENSEMBL:ENSMUSG00000027827	MGI:109155	protein coding gene	potassium voltage-gated channel, shaker-related subfamily, beta member 1
3	gene	64.94922	65.22370	positive	MGI_C57BL6J_5611276	Gm38048	ENSEMBL:ENSMUSG00000102437	MGI:5611276	lncRNA gene	predicted gene, 38048

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	65.49409	65.49563	negative	MGI_C57BL6J_5593939	Gm34780	NCBI_Gene:102638146,ENSEMBL:ENSMUSG00000103513	MGI:5593939	lncRNA gene	predicted gene, 34780
3	gene	65.49517	65.51729	positive	MGI_C57BL6J_5622951	Gm40066	NCBI_Gene:105244461	MGI:5622951	lncRNA gene	predicted gene, 40066
3	pseudogene	65.50628	65.50664	negative	MGI_C57BL6J_5610237	Gm37009	ENSEMBL:ENSMUSG00000103880	MGI:5610237	pseudogene	predicted gene, 37009
3	gene	65.50646	65.52004	negative	MGI_C57BL6J_5621388	Gm38503	NCBI_Gene:102637953	MGI:5621388	lncRNA gene	predicted gene, 38503
3	gene	65.50726	65.52941	negative	MGI_C57BL6J_1918254	4931440P22Rik	NCBI_Gene:71004,ENSEMBL:ENSMUSG00000074580	MGI:1918254	lncRNA gene	RIKEN cDNA 4931440P22 gene
3	gene	65.52570	65.52579	positive	MGI_C57BL6J_5452056	Gm22279	ENSEMBL:ENSMUSG00000087825	MGI:5452056	snRNA gene	predicted gene, 22279
3	gene	65.52841	65.55552	positive	MGI_C57BL6J_2159210	Tiparp	NCBI_Gene:99929,ENSEMBL:ENSMUSG00000034640	MGI:2159210	protein coding gene	TCDD-inducible poly(ADP-ribose) polymerase
3	gene	65.57522	65.58085	negative	MGI_C57BL6J_5594083	Gm34924	NCBI_Gene:102638334	MGI:5594083	lncRNA gene	predicted gene, 34924
3	pseudogene	65.61350	65.61532	positive	MGI_C57BL6J_3648046	Gm5847	NCBI_Gene:545530,ENSEMBL:ENSMUSG00000082280	MGI:3648046	pseudogene	predicted gene 5847
3	pseudogene	65.61537	65.61617	negative	MGI_C57BL6J_5611461	Gm38233	ENSEMBL:ENSMUSG00000103294	MGI:5611461	pseudogene	predicted gene, 38233
3	gene	65.65929	65.65943	positive	MGI_C57BL6J_5531019	Mir8120	miRBase:MI0026052,NCBI_Gene:102465905,ENSEMBL:ENSMUSG00000098944	MGI:5531019	miRNA gene	microRNA 8120
3	gene	65.65954	65.83248	positive	MGI_C57BL6J_3645902	Lekr1	NCBI_Gene:624866,ENSEMBL:ENSMUSG00000074579	MGI:3645902	protein coding gene	leucine, glutamate and lysine rich 1
3	gene	65.67839	65.68088	positive	MGI_C57BL6J_5611004	Gm37776	ENSEMBL:ENSMUSG00000104037	MGI:5611004	unclassified gene	predicted gene, 37776
3	gene	65.77151	65.77162	negative	MGI_C57BL6J_5455532	Gm25755	ENSEMBL:ENSMUSG00000065330	MGI:5455532	snRNA gene	predicted gene, 25755
3	gene	65.82912	65.87228	negative	MGI_C57BL6J_5610587	Gm37359	ENSEMBL:ENSMUSG00000103620	MGI:5610587	lncRNA gene	predicted gene, 37359
3	gene	65.86327	65.86483	negative	MGI_C57BL6J_5610359	Gm37131	ENSEMBL:ENSMUSG00000103440	MGI:5610359	unclassified gene	predicted gene, 37131
3	gene	65.92610	65.92828	negative	MGI_C57BL6J_5594198	Gm35039	NCBI_Gene:102638487	MGI:5594198	lncRNA gene	predicted gene, 35039
3	pseudogene	65.93349	65.93391	negative	MGI_C57BL6J_5610265	Gm37037	ENSEMBL:ENSMUSG00000102566	MGI:5610265	pseudogene	predicted gene, 37037
3	gene	65.94591	65.95839	negative	MGI_C57BL6J_1922664	Ccnl1	NCBI_Gene:56706,ENSEMBL:ENSMUSG00000027829	MGI:1922664	protein coding gene	cyclin L1
3	gene	65.95776	65.96204	positive	MGI_C57BL6J_5610533	Gm37305	ENSEMBL:ENSMUSG00000103041	MGI:5610533	lncRNA gene	predicted gene, 37305
3	pseudogene	65.96873	65.97028	negative	MGI_C57BL6J_5594265	Gm35106	NCBI_Gene:105244463,ENSEMBL:ENSMUSG00000102914	MGI:5594265	pseudogene	predicted gene, 35106
3	gene	65.96991	65.97192	positive	MGI_C57BL6J_5610306	Gm37078	ENSEMBL:ENSMUSG00000102652	MGI:5610306	unclassified gene	predicted gene, 37078
3	pseudogene	65.98716	65.98975	negative	MGI_C57BL6J_5011209	Gm19024	NCBI_Gene:100418133,ENSEMBL:ENSMUSG00000103641	MGI:5011209	pseudogene	predicted gene, 19024
3	pseudogene	66.02950	66.03152	negative	MGI_C57BL6J_3643872	Gm6546	NCBI_Gene:625048,ENSEMBL:ENSMUSG00000103369	MGI:3643872	pseudogene	predicted gene 6546
3	gene	66.05356	66.29707	negative	MGI_C57BL6J_1920039	Veph1	NCBI_Gene:72789,ENSEMBL:ENSMUSG00000027831	MGI:1920039	protein coding gene	ventricular zone expressed PH domain-containing 1
3	gene	66.08668	66.08779	positive	MGI_C57BL6J_5611050	Gm37822	ENSEMBL:ENSMUSG00000104189	MGI:5611050	unclassified gene	predicted gene, 37822
3	gene	66.08811	66.08826	negative	MGI_C57BL6J_5456219	Gm26442	ENSEMBL:ENSMUSG00000064522	MGI:5456219	snRNA gene	predicted gene, 26442
3	pseudogene	66.09981	66.10006	positive	MGI_C57BL6J_5610201	Gm36973	ENSEMBL:ENSMUSG00000104307	MGI:5610201	pseudogene	predicted gene, 36973
3	pseudogene	66.12840	66.12975	negative	MGI_C57BL6J_98800	Tpi-rs2	NCBI_Gene:111205,ENSEMBL:ENSMUSG00000097968	MGI:98800	pseudogene	triosephosphate isomerase related sequence 2
3	pseudogene	66.19109	66.19124	negative	MGI_C57BL6J_5610558	Gm37330	ENSEMBL:ENSMUSG00000103208	MGI:5610558	pseudogene	predicted gene, 37330
3	gene	66.21989	66.22581	positive	MGI_C57BL6J_104641	Ptx3	NCBI_Gene:19288,ENSEMBL:ENSMUSG00000027832	MGI:104641	protein coding gene	pentraxin related gene
3	pseudogene	66.36454	66.36463	positive	MGI_C57BL6J_6275305	Gm50014	ENSEMBL:ENSMUSG00000117623	MGI:6275305	pseudogene	predicted gene, 50014
3	gene	66.37430	66.38810	positive	MGI_C57BL6J_5594343	Gm35184	NCBI_Gene:102638679	MGI:5594343	lncRNA gene	predicted gene, 35184
3	gene	66.40041	66.40607	positive	MGI_C57BL6J_5594395	Gm35236	NCBI_Gene:102638746	MGI:5594395	lncRNA gene	predicted gene, 35236
3	pseudogene	66.56278	66.56355	negative	MGI_C57BL6J_5010137	Gm17952	NCBI_Gene:100416166,ENSEMBL:ENSMUSG00000103600	MGI:5010137	pseudogene	predicted gene, 17952
3	pseudogene	66.88235	66.88314	positive	MGI_C57BL6J_3646021	Gm6555	NCBI_Gene:625115,ENSEMBL:ENSMUSG00000103700	MGI:3646021	pseudogene	predicted gene 6555
3	pseudogene	66.90736	66.90777	negative	MGI_C57BL6J_5611584	Gm38356	ENSEMBL:ENSMUSG00000103318	MGI:5611584	pseudogene	predicted gene, 38356
3	pseudogene	66.95354	66.95386	positive	MGI_C57BL6J_5663653	Gm43516	ENSEMBL:ENSMUSG00000105794	MGI:5663653	pseudogene	predicted gene 43516
3	gene	66.97172	66.98177	negative	MGI_C57BL6J_1201673	Shox2	NCBI_Gene:20429,ENSEMBL:ENSMUSG00000027833	MGI:1201673	protein coding gene	short stature homeobox 2
3	gene	66.98139	67.35840	positive	MGI_C57BL6J_1914130	Rsrc1	NCBI_Gene:66880,ENSEMBL:ENSMUSG00000034544	MGI:1914130	protein coding gene	arginine/serine-rich coiled-coil 1
3	gene	67.05596	67.05606	positive	MGI_C57BL6J_5452072	Gm22295	ENSEMBL:ENSMUSG00000065245	MGI:5452072	snRNA gene	predicted gene, 22295
3	gene	67.36546	67.37516	negative	MGI_C57BL6J_4937036	Gm17402	ENSEMBL:ENSMUSG00000090408	MGI:4937036	protein coding gene	predicted gene, 17402
3	gene	67.37410	67.40000	positive	MGI_C57BL6J_1341819	Mlf1	NCBI_Gene:17349,ENSEMBL:ENSMUSG00000048416	MGI:1341819	protein coding gene	myeloid leukemia factor 1
3	gene	67.43010	67.47653	positive	MGI_C57BL6J_107339	Gfm1	NCBI_Gene:28030,ENSEMBL:ENSMUSG00000027774	MGI:107339	protein coding gene	G elongation factor, mitochondrial 1
3	gene	67.45800	67.46393	negative	MGI_C57BL6J_107633	Lxn	NCBI_Gene:17035,ENSEMBL:ENSMUSG00000047557	MGI:107633	protein coding gene	latexin
3	gene	67.47698	67.47882	positive	MGI_C57BL6J_5662705	Gm42568	ENSEMBL:ENSMUSG00000103703	MGI:5662705	unclassified gene	predicted gene 42568
3	gene	67.47889	67.51552	negative	MGI_C57BL6J_1924461	Rarres1	NCBI_Gene:109222,ENSEMBL:ENSMUSG00000049404	MGI:1924461	protein coding gene	retinoic acid receptor responder (tazarotene induced) 1
3	gene	67.51567	67.51966	positive	MGI_C57BL6J_5622952	Gm40067	NCBI_Gene:105244464	MGI:5622952	lncRNA gene	predicted gene, 40067
3	gene	67.52266	67.55343	negative	MGI_C57BL6J_5594458	Gm35299	NCBI_Gene:102638825,ENSEMBL:ENSMUSG00000103718	MGI:5594458	lncRNA gene	predicted gene, 35299
3	gene	67.57057	67.57282	negative	MGI_C57BL6J_1921179	4930402C01Rik	ENSEMBL:ENSMUSG00000104382	MGI:1921179	lncRNA gene	RIKEN cDNA 4930402C01 gene
3	gene	67.57316	67.57329	negative	MGI_C57BL6J_5455696	Gm25919	ENSEMBL:ENSMUSG00000077459	MGI:5455696	snoRNA gene	predicted gene, 25919
3	gene	67.58274	67.60424	positive	MGI_C57BL6J_1914118	Mfsd1	NCBI_Gene:66868,ENSEMBL:ENSMUSG00000027775	MGI:1914118	protein coding gene	major facilitator superfamily domain containing 1
3	pseudogene	67.60575	67.60785	negative	MGI_C57BL6J_3648243	Gm8515	NCBI_Gene:667207,ENSEMBL:ENSMUSG00000103206	MGI:3648243	pseudogene	predicted gene 8515
3	pseudogene	67.61978	67.62073	negative	MGI_C57BL6J_2685258	Gm412	NCBI_Gene:208424,ENSEMBL:ENSMUSG00000103606	MGI:2685258	pseudogene	predicted gene 412
3	pseudogene	67.68436	67.68475	negative	MGI_C57BL6J_5610829	Gm37601	ENSEMBL:ENSMUSG00000102746	MGI:5610829	pseudogene	predicted gene, 37601
3	pseudogene	67.74197	67.74330	negative	MGI_C57BL6J_5010902	Gm18717	NCBI_Gene:100417618,ENSEMBL:ENSMUSG00000104477	MGI:5010902	pseudogene	predicted gene, 18717
3	gene	67.75360	67.75565	positive	MGI_C57BL6J_5594566	Gm35407	NCBI_Gene:102638975	MGI:5594566	lncRNA gene	predicted gene, 35407
3	gene	67.75566	67.76628	positive	MGI_C57BL6J_5622953	Gm40068	NCBI_Gene:105244465	MGI:5622953	lncRNA gene	predicted gene, 40068
3	gene	67.89222	68.05659	positive	MGI_C57BL6J_3644166	Iqcj	NCBI_Gene:208426,ENSEMBL:ENSMUSG00000051777	MGI:3644166	protein coding gene	IQ motif containing J
3	gene	67.89222	68.62648	positive	MGI_C57BL6J_5439400	Iqschfp	NCBI_Gene:100505386,ENSEMBL:ENSMUSG00000102422	MGI:5439400	protein coding gene	Iqcj and Schip1 fusion protein
3	gene	68.06480	68.62648	positive	MGI_C57BL6J_1353557	Schip1	NCBI_Gene:30953,ENSEMBL:ENSMUSG00000027777	MGI:1353557	protein coding gene	schwannomin interacting protein 1
3	pseudogene	68.30377	68.31036	negative	MGI_C57BL6J_3648047	Gm5848	NCBI_Gene:545531	MGI:3648047	pseudogene	predicted pseudogene 5848
3	pseudogene	68.33319	68.33378	positive	MGI_C57BL6J_3642851	Gm10292	NCBI_Gene:631379,ENSEMBL:ENSMUSG00000102846	MGI:3642851	pseudogene	predicted gene 10292
3	gene	68.40778	68.41470	positive	MGI_C57BL6J_3641783	Gm10723	ENSEMBL:ENSMUSG00000103345	MGI:3641783	unclassified gene	predicted gene 10723
3	gene	68.54752	68.54771	negative	MGI_C57BL6J_5451850	Gm22073	ENSEMBL:ENSMUSG00000084617	MGI:5451850	snRNA gene	predicted gene, 22073
3	gene	68.69064	68.69855	positive	MGI_C57BL6J_96539	Il12a	NCBI_Gene:16159,ENSEMBL:ENSMUSG00000027776	MGI:96539	protein coding gene	interleukin 12a
3	pseudogene	68.73314	68.73808	positive	MGI_C57BL6J_3708676	Gm10040	ENSEMBL:ENSMUSG00000058360	MGI:3708676	pseudogene	predicted gene 10040
3	gene	68.75991	68.76143	negative	MGI_C57BL6J_1922468	4930535E02Rik	ENSEMBL:ENSMUSG00000102677	MGI:1922468	lncRNA gene	RIKEN cDNA 4930535E02 gene
3	gene	68.76136	68.76267	positive	MGI_C57BL6J_5594743	Gm35584	NCBI_Gene:102639225,ENSEMBL:ENSMUSG00000102936	MGI:5594743	lncRNA gene	predicted gene, 35584
3	pseudogene	68.84608	68.84741	positive	MGI_C57BL6J_3644317	Gm7270	NCBI_Gene:639530,ENSEMBL:ENSMUSG00000103218,ENSEMBL:ENSMUSG00000102853	MGI:3644317	pseudogene	predicted gene 7270
3	gene	68.86792	68.87027	negative	MGI_C57BL6J_4937275	Gm17641	ENSEMBL:ENSMUSG00000091272	MGI:4937275	protein coding gene	predicted gene, 17641
3	gene	68.86959	68.87216	positive	MGI_C57BL6J_1915975	1110032F04Rik	NCBI_Gene:68725,ENSEMBL:ENSMUSG00000046999	MGI:1915975	protein coding gene	RIKEN cDNA 1110032F04 gene
3	gene	68.89250	69.00464	negative	MGI_C57BL6J_1915509	Ift80	NCBI_Gene:68259,ENSEMBL:ENSMUSG00000027778	MGI:1915509	protein coding gene	intraflagellar transport 80
3	pseudogene	68.90017	68.90045	negative	MGI_C57BL6J_5313136	Gm20689	ENSEMBL:ENSMUSG00000093384	MGI:5313136	pseudogene	predicted gene 20689
3	pseudogene	68.90181	68.90216	positive	MGI_C57BL6J_5313137	Gm20690	ENSEMBL:ENSMUSG00000093730,ENSEMBL:ENSMUSG00000103007	MGI:5313137	pseudogene	predicted gene 20690
3	pseudogene	68.90216	68.90278	negative	MGI_C57BL6J_5010773	Gm18588	NCBI_Gene:100417394,ENSEMBL:ENSMUSG00000093402	MGI:5010773	pseudogene	predicted gene, 18588
3	pseudogene	68.90382	68.90415	negative	MGI_C57BL6J_5313138	Gm20691	ENSEMBL:ENSMUSG00000093505	MGI:5313138	pseudogene	predicted gene 20691
3	gene	68.91650	68.91732	negative	MGI_C57BL6J_6097561	Gm48183	ENSEMBL:ENSMUSG00000111756	MGI:6097561	unclassified gene	predicted gene, 48183
3	gene	69.00474	69.03462	positive	MGI_C57BL6J_1917349	Smc4	NCBI_Gene:70099,ENSEMBL:ENSMUSG00000034349	MGI:1917349	protein coding gene	structural maintenance of chromosomes 4
3	gene	69.00977	69.00983	positive	MGI_C57BL6J_2676842	Mir15b	miRBase:MI0000140,NCBI_Gene:387175,ENSEMBL:ENSMUSG00000065580	MGI:2676842	miRNA gene	microRNA 15b
3	gene	69.00990	69.01000	positive	MGI_C57BL6J_3618690	Mir16-2	miRBase:MI0000566,NCBI_Gene:723949,ENSEMBL:ENSMUSG00000065606	MGI:3618690	miRNA gene	microRNA 16-2
3	gene	69.03529	69.04640	negative	MGI_C57BL6J_1914199	Trim59	NCBI_Gene:66949,ENSEMBL:ENSMUSG00000034317	MGI:1914199	protein coding gene	tripartite motif-containing 59
3	gene	69.06065	69.06525	positive	MGI_C57BL6J_2442898	9630025H16Rik	NCBI_Gene:105244467	MGI:2442898	lncRNA gene	RIKEN cDNA 9630025H16 gene
3	gene	69.06715	69.12711	negative	MGI_C57BL6J_1100848	Kpna4	NCBI_Gene:16649,ENSEMBL:ENSMUSG00000027782	MGI:1100848	protein coding gene	karyopherin (importin) alpha 4
3	gene	69.08510	69.08545	negative	MGI_C57BL6J_5451786	Gm22009	ENSEMBL:ENSMUSG00000089417	MGI:5451786	snoRNA gene	predicted gene, 22009
3	gene	69.11974	69.12272	negative	MGI_C57BL6J_5610786	Gm37558	ENSEMBL:ENSMUSG00000103094	MGI:5610786	unclassified gene	predicted gene, 37558
3	gene	69.13123	69.15718	positive	MGI_C57BL6J_2686493	Gm1647	NCBI_Gene:381452,ENSEMBL:ENSMUSG00000094763	MGI:2686493	lncRNA gene	predicted gene 1647
3	gene	69.22242	69.22362	positive	MGI_C57BL6J_1918869	Arl14	NCBI_Gene:71619,ENSEMBL:ENSMUSG00000098207	MGI:1918869	protein coding gene	ADP-ribosylation factor-like 14
3	gene	69.25461	69.26383	positive	MGI_C57BL6J_5622955	Gm40070	NCBI_Gene:105244468	MGI:5622955	lncRNA gene	predicted gene, 40070
3	gene	69.31686	69.56080	positive	MGI_C57BL6J_2139740	Ppm1l	NCBI_Gene:242083,ENSEMBL:ENSMUSG00000027784	MGI:2139740	protein coding gene	protein phosphatase 1 (formerly 2C)-like
3	gene	69.31816	69.31929	negative	MGI_C57BL6J_1920514	1700037N05Rik	NA	NA	unclassified gene	RIKEN cDNA 1700037N05 gene
3	pseudogene	69.32001	69.32062	negative	MGI_C57BL6J_4938041	Gm17214	NCBI_Gene:100416279,ENSEMBL:ENSMUSG00000091315	MGI:4938041	pseudogene	predicted gene 17214
3	pseudogene	69.33519	69.33579	negative	MGI_C57BL6J_4938039	Gm17212	NCBI_Gene:100416280,ENSEMBL:ENSMUSG00000090941	MGI:4938039	pseudogene	predicted gene 17212
3	gene	69.37640	69.38370	positive	MGI_C57BL6J_2443158	A330078L11Rik	NA	NA	unclassified gene	RIKEN cDNA A330078L11 gene
3	pseudogene	69.43101	69.43238	negative	MGI_C57BL6J_4938040	Gm17213	NCBI_Gene:100417908,ENSEMBL:ENSMUSG00000090743	MGI:4938040	pseudogene	predicted gene 17213
3	pseudogene	69.56624	69.56747	negative	MGI_C57BL6J_3644126	Gm8565	NCBI_Gene:667309,ENSEMBL:ENSMUSG00000098006	MGI:3644126	pseudogene	predicted gene 8565
3	gene	69.57392	69.59896	negative	MGI_C57BL6J_1349405	B3galnt1	NCBI_Gene:26879,ENSEMBL:ENSMUSG00000043300	MGI:1349405	protein coding gene	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1
3	pseudogene	69.66177	69.66216	positive	MGI_C57BL6J_5610608	Gm37380	ENSEMBL:ENSMUSG00000102342	MGI:5610608	pseudogene	predicted gene, 37380
3	gene	69.68547	69.68558	positive	MGI_C57BL6J_5455398	Gm25621	ENSEMBL:ENSMUSG00000087848	MGI:5455398	rRNA gene	predicted gene, 25621
3	pseudogene	69.71694	69.71744	negative	MGI_C57BL6J_98039	Rpl32-ps	NCBI_Gene:19952,ENSEMBL:ENSMUSG00000068969	MGI:98039	pseudogene	ribosomal protein L32, pseudogene
3	gene	69.72199	69.75637	positive	MGI_C57BL6J_2140103	Nmd3	NCBI_Gene:97112,ENSEMBL:ENSMUSG00000027787	MGI:2140103	protein coding gene	NMD3 ribosome export adaptor
3	gene	69.75311	69.75637	positive	MGI_C57BL6J_2442565	9530051E23Rik	NA	NA	unclassified gene	RIKEN cDNA 9530051E23 gene
3	pseudogene	69.80846	69.80902	negative	MGI_C57BL6J_5011240	Gm19055	NCBI_Gene:100418175	MGI:5011240	pseudogene	predicted gene, 19055
3	gene	69.81954	69.85994	negative	MGI_C57BL6J_1913433	Sptssb	NCBI_Gene:66183,ENSEMBL:ENSMUSG00000043461	MGI:1913433	protein coding gene	serine palmitoyltransferase, small subunit B
3	gene	69.88247	69.88411	positive	MGI_C57BL6J_5594976	Gm35817	NCBI_Gene:102639522	MGI:5594976	lncRNA gene	predicted gene, 35817
3	pseudogene	69.95481	69.95568	negative	MGI_C57BL6J_5010080	Gm17895	NCBI_Gene:100416058,ENSEMBL:ENSMUSG00000103549	MGI:5010080	pseudogene	predicted gene, 17895
3	gene	69.96232	69.96245	negative	MGI_C57BL6J_5453261	Gm23484	ENSEMBL:ENSMUSG00000077366	MGI:5453261	snoRNA gene	predicted gene, 23484
3	pseudogene	69.96328	69.96347	positive	MGI_C57BL6J_5611012	Gm37784	ENSEMBL:ENSMUSG00000102525	MGI:5611012	pseudogene	predicted gene, 37784
3	gene	70.00761	70.02871	positive	MGI_C57BL6J_2685260	Otol1	NCBI_Gene:229389,ENSEMBL:ENSMUSG00000027788	MGI:2685260	protein coding gene	otolin 1
3	pseudogene	70.05975	70.06047	positive	MGI_C57BL6J_5610909	Gm37681	ENSEMBL:ENSMUSG00000103020	MGI:5610909	pseudogene	predicted gene, 37681
3	pseudogene	70.11625	70.11653	negative	MGI_C57BL6J_5610813	Gm37585	ENSEMBL:ENSMUSG00000103113	MGI:5610813	pseudogene	predicted gene, 37585
3	gene	70.22875	70.22887	negative	MGI_C57BL6J_5453254	Gm23477	ENSEMBL:ENSMUSG00000089507	MGI:5453254	snoRNA gene	predicted gene, 23477
3	pseudogene	70.41328	70.41388	positive	MGI_C57BL6J_3644892	Gm6631	NCBI_Gene:625868,ENSEMBL:ENSMUSG00000102663	MGI:3644892	pseudogene	predicted gene 6631
3	pseudogene	70.56626	70.56730	negative	MGI_C57BL6J_5610441	Gm37213	ENSEMBL:ENSMUSG00000104023	MGI:5610441	pseudogene	predicted gene, 37213

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	pseudogene	72.60384	72.60435	negative	MGI_C57BL6J_5611129	Gm37901	ENSEMBL:ENSMUSG00000103078	MGI:5611129	pseudogene	predicted gene, 37901
3	gene	72.73783	72.73798	negative	MGI_C57BL6J_5452228	Gm22451	ENSEMBL:ENSMUSG00000084752	MGI:5452228	snRNA gene	predicted gene, 22451
3	gene	72.88855	72.96786	negative	MGI_C57BL6J_1917233	Sis	NCBI_Gene:69983,ENSEMBL:ENSMUSG00000027790	MGI:1917233	protein coding gene	sucrase isomaltase (alpha-glucosidase)
3	gene	73.04197	73.04384	negative	MGI_C57BL6J_5610284	Gm37056	ENSEMBL:ENSMUSG00000102753	MGI:5610284	unclassified gene	predicted gene, 37056
3	gene	73.04725	73.05788	negative	MGI_C57BL6J_2679447	Slitrk3	NCBI_Gene:386750,ENSEMBL:ENSMUSG00000048304	MGI:2679447	protein coding gene	SLIT and NTRK-like family, member 3
3	gene	73.06632	73.59483	positive	MGI_C57BL6J_5434110	Gm20754	NCBI_Gene:626082,ENSEMBL:ENSMUSG00000103428	MGI:5434110	lncRNA gene	predicted gene, 20754
3	gene	73.14685	73.14696	positive	MGI_C57BL6J_5454321	Gm24544	ENSEMBL:ENSMUSG00000077050	MGI:5454321	miRNA gene	predicted gene, 24544
3	gene	73.16409	73.16621	positive	MGI_C57BL6J_5610953	Gm37725	ENSEMBL:ENSMUSG00000102916	MGI:5610953	unclassified gene	predicted gene, 37725
3	gene	73.20770	73.20800	negative	MGI_C57BL6J_5452315	Gm22538	ENSEMBL:ENSMUSG00000088794	MGI:5452315	unclassified non-coding RNA gene	predicted gene, 22538
3	gene	73.32943	73.47001	positive	MGI_C57BL6J_5611581	Gm38353	ENSEMBL:ENSMUSG00000102820	MGI:5611581	lncRNA gene	predicted gene, 38353
3	gene	73.35121	73.48165	negative	MGI_C57BL6J_1921943	4930509J09Rik	NCBI_Gene:74693,ENSEMBL:ENSMUSG00000102362	MGI:1921943	lncRNA gene	RIKEN cDNA 4930509J09 gene
3	gene	73.63581	73.70844	negative	MGI_C57BL6J_894278	Bche	NCBI_Gene:12038,ENSEMBL:ENSMUSG00000027792	MGI:894278	protein coding gene	butyrylcholinesterase

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	pseudogene	73.93305	73.93412	positive	MGI_C57BL6J_3644686	Gm8625	NCBI_Gene:667425,ENSEMBL:ENSMUSG00000102859	MGI:3644686	pseudogene	predicted gene 8625
3	gene	74.00922	74.01728	negative	MGI_C57BL6J_5012541	Gm20356	NCBI_Gene:100504692,ENSEMBL:ENSMUSG00000104096	MGI:5012541	lncRNA gene	predicted gene, 20356
3	gene	74.10541	74.12645	negative	MGI_C57BL6J_5595228	Gm36069	NCBI_Gene:102639855	MGI:5595228	lncRNA gene	predicted gene, 36069
3	pseudogene	74.24226	74.29687	negative	MGI_C57BL6J_3779552	Gm6098	NCBI_Gene:100861784,ENSEMBL:ENSMUSG00000096400	MGI:3779552	pseudogene	predicted gene 6098
3	pseudogene	74.32353	74.32399	negative	MGI_C57BL6J_5610278	Gm37050	ENSEMBL:ENSMUSG00000104227	MGI:5610278	pseudogene	predicted gene, 37050
3	pseudogene	74.81472	74.81534	positive	MGI_C57BL6J_3647458	Gm8643	NCBI_Gene:108168917,ENSEMBL:ENSMUSG00000102809	MGI:3647458	pseudogene	predicted gene 8643
3	gene	75.02240	75.02461	negative	MGI_C57BL6J_5610692	Gm37464	ENSEMBL:ENSMUSG00000102420	MGI:5610692	unclassified gene	predicted gene, 37464
3	gene	75.03790	75.16505	negative	MGI_C57BL6J_2674085	Zbbx	NCBI_Gene:213234,ENSEMBL:ENSMUSG00000034151	MGI:2674085	protein coding gene	zinc finger, B-box domain containing
3	gene	75.16506	75.20808	positive	MGI_C57BL6J_5622956	Gm40071	NCBI_Gene:105244469	MGI:5622956	lncRNA gene	predicted gene, 40071
3	gene	75.24236	75.27008	negative	MGI_C57BL6J_1915181	Serpini2	NCBI_Gene:67931,ENSEMBL:ENSMUSG00000034139	MGI:1915181	protein coding gene	serine (or cysteine) peptidase inhibitor, clade I, member 2
3	gene	75.27393	75.48216	negative	MGI_C57BL6J_3645287	Wdr49	NCBI_Gene:213248,ENSEMBL:ENSMUSG00000104301	MGI:3645287	protein coding gene	WD repeat domain 49
3	pseudogene	75.39132	75.39264	positive	MGI_C57BL6J_5010021	Gm17836	NCBI_Gene:100415953,ENSEMBL:ENSMUSG00000103444	MGI:5010021	pseudogene	predicted gene, 17836
3	gene	75.51649	75.55686	negative	MGI_C57BL6J_1928396	Pdcd10	NCBI_Gene:56426,ENSEMBL:ENSMUSG00000027835	MGI:1928396	protein coding gene	programmed cell death 10

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	75.87508	75.95695	negative	MGI_C57BL6J_1920374	Golim4	NCBI_Gene:73124,ENSEMBL:ENSMUSG00000034109	MGI:1920374	protein coding gene	golgi integral membrane protein 4
3	gene	75.95212	75.95430	positive	MGI_C57BL6J_5610913	Gm37685	ENSEMBL:ENSMUSG00000103024	MGI:5610913	unclassified gene	predicted gene, 37685
3	gene	75.95610	76.00114	positive	MGI_C57BL6J_5610484	Gm37256	ENSEMBL:ENSMUSG00000104448	MGI:5610484	lncRNA gene	predicted gene, 37256
3	pseudogene	76.04092	76.04172	negative	MGI_C57BL6J_5010613	Gm18428	NCBI_Gene:100417155,ENSEMBL:ENSMUSG00000104223	MGI:5010613	pseudogene	predicted gene, 18428
3	gene	76.07427	76.71002	positive	MGI_C57BL6J_2442179	Fstl5	NCBI_Gene:213262,ENSEMBL:ENSMUSG00000034098	MGI:2442179	protein coding gene	follistatin-like 5
3	gene	76.54669	76.55025	positive	MGI_C57BL6J_5611125	Gm37897	ENSEMBL:ENSMUSG00000103920	MGI:5611125	unclassified gene	predicted gene, 37897
3	pseudogene	76.82206	76.82240	positive	MGI_C57BL6J_5610518	Gm37290	ENSEMBL:ENSMUSG00000103702	MGI:5610518	pseudogene	predicted gene, 37290
3	pseudogene	76.88450	76.88533	positive	MGI_C57BL6J_5011416	Gm19231	NCBI_Gene:100418471,ENSEMBL:ENSMUSG00000102216	MGI:5011416	pseudogene	predicted gene, 19231
3	gene	77.10521	77.10528	negative	MGI_C57BL6J_5453421	Gm23644	ENSEMBL:ENSMUSG00000088481	MGI:5453421	snoRNA gene	predicted gene, 23644
3	pseudogene	77.56081	77.56394	negative	MGI_C57BL6J_2674154	Dnmt3a-ps1	NCBI_Gene:445261,ENSEMBL:ENSMUSG00000102489	MGI:2674154	pseudogene	DNA methyltransferase 3A, pseudogene 1
3	gene	77.56496	77.57134	negative	MGI_C57BL6J_5611034	Gm37806	ENSEMBL:ENSMUSG00000103849	MGI:5611034	unclassified gene	predicted gene, 37806
3	pseudogene	77.69137	77.69223	negative	MGI_C57BL6J_5010480	Gm18295	NCBI_Gene:100416866	MGI:5010480	pseudogene	predicted gene, 18295
3	gene	77.70289	77.70439	negative	MGI_C57BL6J_5611423	Gm38195	ENSEMBL:ENSMUSG00000102872	MGI:5611423	unclassified gene	predicted gene, 38195
3	pseudogene	77.87278	77.87315	negative	MGI_C57BL6J_5610804	Gm37576	ENSEMBL:ENSMUSG00000102393	MGI:5610804	pseudogene	predicted gene, 37576
3	pseudogene	77.96138	77.96280	positive	MGI_C57BL6J_5010904	Gm18719	NCBI_Gene:100417620,ENSEMBL:ENSMUSG00000105026	MGI:5010904	pseudogene	predicted gene, 18719
3	pseudogene	78.00646	78.00698	positive	MGI_C57BL6J_3648953	Gm6677	NCBI_Gene:626461,ENSEMBL:ENSMUSG00000103312	MGI:3648953	pseudogene	predicted gene 6677
3	pseudogene	78.08583	78.08740	negative	MGI_C57BL6J_3643677	Gm8684	NCBI_Gene:667526,ENSEMBL:ENSMUSG00000102637	MGI:3643677	pseudogene	predicted gene 8684
3	pseudogene	78.13446	78.13558	positive	MGI_C57BL6J_3645908	Gm6680	NCBI_Gene:626479,ENSEMBL:ENSMUSG00000103817	MGI:3645908	pseudogene	predicted gene 6680
3	gene	78.40430	78.40594	negative	MGI_C57BL6J_5663463	Gm43326	ENSEMBL:ENSMUSG00000104782	MGI:5663463	unclassified gene	predicted gene 43326
3	gene	78.40616	78.41077	negative	MGI_C57BL6J_5595447	Gm36288	NCBI_Gene:102640153	MGI:5595447	lncRNA gene	predicted gene, 36288
3	pseudogene	78.48658	78.48868	negative	MGI_C57BL6J_3705708	Gm15442	NCBI_Gene:100041691,ENSEMBL:ENSMUSG00000084370	MGI:3705708	pseudogene	predicted gene 15442
3	pseudogene	78.75862	78.75946	positive	MGI_C57BL6J_5011137	Gm18952	NCBI_Gene:100418022,ENSEMBL:ENSMUSG00000102341	MGI:5011137	pseudogene	predicted gene, 18952
3	gene	78.78973	78.79223	negative	MGI_C57BL6J_5595500	Gm36341	NCBI_Gene:102640221	MGI:5595500	lncRNA gene	predicted gene, 36341
3	gene	78.84222	78.84257	positive	MGI_C57BL6J_5454526	Gm24749	ENSEMBL:ENSMUSG00000088463	MGI:5454526	unclassified non-coding RNA gene	predicted gene, 24749
3	pseudogene	78.86489	78.86557	negative	MGI_C57BL6J_5010138	Gm17953	NCBI_Gene:100416167,ENSEMBL:ENSMUSG00000102438	MGI:5010138	pseudogene	predicted gene, 17953
3	pseudogene	78.89183	78.89247	negative	MGI_C57BL6J_3646590	Gm5277	NCBI_Gene:383883,ENSEMBL:ENSMUSG00000091361	MGI:3646590	pseudogene	predicted gene 5277
3	pseudogene	78.91724	78.91846	positive	MGI_C57BL6J_3641638	Gm10291	NCBI_Gene:100041748,ENSEMBL:ENSMUSG00000070443	MGI:3641638	pseudogene	predicted pseudogene 10291
3	gene	78.91846	78.93631	negative	MGI_C57BL6J_5621427	Gm38542	NCBI_Gene:102641233	MGI:5621427	lncRNA gene	predicted gene, 38542
3	pseudogene	78.96549	78.96715	negative	MGI_C57BL6J_3704220	Gm9762	NCBI_Gene:100041766,ENSEMBL:ENSMUSG00000037096	MGI:3704220	pseudogene	predicted pseudogene 9762
3	gene	78.97992	78.98005	positive	MGI_C57BL6J_5453217	Gm23440	ENSEMBL:ENSMUSG00000077487	MGI:5453217	snoRNA gene	predicted gene, 23440
3	gene	79.06251	79.28724	negative	MGI_C57BL6J_2659071	Rapgef2	NCBI_Gene:76089,ENSEMBL:ENSMUSG00000062232	MGI:2659071	protein coding gene	Rap guanine nucleotide exchange factor (GEF) 2
3	gene	79.19637	79.19648	positive	MGI_C57BL6J_5453927	Gm24150	ENSEMBL:ENSMUSG00000064693	MGI:5453927	snRNA gene	predicted gene, 24150
3	gene	79.21292	79.25391	positive	MGI_C57BL6J_1918174	4921511C10Rik	NCBI_Gene:70924,ENSEMBL:ENSMUSG00000104585	MGI:1918174	lncRNA gene	RIKEN cDNA 4921511C10 gene
3	gene	79.23228	79.23413	negative	MGI_C57BL6J_2443462	B930012P20Rik	NA	NA	unclassified gene	RIKEN cDNA B930012P20 gene
3	gene	79.28717	79.28985	positive	MGI_C57BL6J_2686494	6430573P05Rik	ENSEMBL:ENSMUSG00000102545	MGI:2686494	lncRNA gene	RIKEN cDNA 6430573P05 gene
3	gene	79.33420	79.33658	negative	MGI_C57BL6J_5622957	Gm40072	NCBI_Gene:105244470	MGI:5622957	lncRNA gene	predicted gene, 40072
3	gene	79.33666	79.46413	positive	MGI_C57BL6J_4936993	Gm17359	NCBI_Gene:100233207,ENSEMBL:ENSMUSG00000091685	MGI:4936993	protein coding gene	predicted gene, 17359
3	gene	79.45597	79.56780	negative	MGI_C57BL6J_2683054	Fnip2	NCBI_Gene:329679,ENSEMBL:ENSMUSG00000061175	MGI:2683054	protein coding gene	folliculin interacting protein 2
3	gene	79.50979	79.51210	negative	MGI_C57BL6J_5595601	Gm36442	NCBI_Gene:102640362	MGI:5595601	lncRNA gene	predicted gene, 36442
3	gene	79.55131	79.55219	negative	MGI_C57BL6J_3781690	Gm3513	ENSEMBL:ENSMUSG00000089746	MGI:3781690	lncRNA gene	predicted gene 3513
3	gene	79.56819	79.57332	positive	MGI_C57BL6J_1923129	4930589L23Rik	NCBI_Gene:75879,ENSEMBL:ENSMUSG00000068957	MGI:1923129	lncRNA gene	RIKEN cDNA 4930589L23 gene
3	pseudogene	79.58259	79.58323	positive	MGI_C57BL6J_5594226	Gm35067	ENSEMBL:ENSMUSG00000103564	MGI:5594226	pseudogene	predicted gene, 35067
3	gene	79.59134	79.60365	positive	MGI_C57BL6J_1914988	Ppid	NCBI_Gene:67738,ENSEMBL:ENSMUSG00000027804	MGI:1914988	protein coding gene	peptidylprolyl isomerase D (cyclophilin D)
3	gene	79.60379	79.62950	negative	MGI_C57BL6J_106100	Etfdh	NCBI_Gene:66841,ENSEMBL:ENSMUSG00000027809	MGI:106100	protein coding gene	electron transferring flavoprotein, dehydrogenase
3	gene	79.61054	79.61183	negative	MGI_C57BL6J_5611201	Gm37973	ENSEMBL:ENSMUSG00000102370	MGI:5611201	unclassified gene	predicted gene, 37973
3	gene	79.62908	79.63282	positive	MGI_C57BL6J_1923189	4930579G24Rik	NCBI_Gene:75939,ENSEMBL:ENSMUSG00000027811	MGI:1923189	protein coding gene	RIKEN cDNA 4930579G24 gene
3	gene	79.64160	79.73795	negative	MGI_C57BL6J_2682211	Rxfp1	NCBI_Gene:381489,ENSEMBL:ENSMUSG00000034009	MGI:2682211	protein coding gene	relaxin/insulin-like family peptide receptor 1
3	gene	79.67337	79.67688	negative	MGI_C57BL6J_5504099	Gm26984	ENSEMBL:ENSMUSG00000098204	MGI:5504099	lncRNA gene	predicted gene, 26984
3	gene	79.81256	79.85279	negative	MGI_C57BL6J_1917902	Tmem144	NCBI_Gene:70652,ENSEMBL:ENSMUSG00000027956	MGI:1917902	protein coding gene	transmembrane protein 144
3	gene	79.83493	79.83504	positive	MGI_C57BL6J_5456197	Gm26420	ENSEMBL:ENSMUSG00000077461	MGI:5456197	snRNA gene	predicted gene, 26420
3	gene	79.85287	79.85666	positive	MGI_C57BL6J_5622958	Gm40073	NCBI_Gene:105244471	MGI:5622958	lncRNA gene	predicted gene, 40073
3	gene	79.85929	79.88681	negative	MGI_C57BL6J_5595728	Gm36569	NCBI_Gene:102640530,ENSEMBL:ENSMUSG00000102191	MGI:5595728	lncRNA gene	predicted gene, 36569
3	gene	79.88447	79.94628	positive	MGI_C57BL6J_1915909	Gask1b	NCBI_Gene:68659,ENSEMBL:ENSMUSG00000027955	MGI:1915909	protein coding gene	golgi associated kinase 1B

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	81.88073	81.88087	positive	MGI_C57BL6J_5452308	Gm22531	ENSEMBL:ENSMUSG00000089444	MGI:5452308	snoRNA gene	predicted gene, 22531
3	gene	81.91659	81.92467	negative	MGI_C57BL6J_3642361	Gm9989	NCBI_Gene:102640985,ENSEMBL:ENSMUSG00000056023	MGI:3642361	lncRNA gene	predicted gene 9989
3	gene	81.93260	81.95673	positive	MGI_C57BL6J_2139628	Ctso	NCBI_Gene:229445,ENSEMBL:ENSMUSG00000028015	MGI:2139628	protein coding gene	cathepsin O
3	gene	81.95709	81.97620	negative	MGI_C57BL6J_1928486	Tdo2	NCBI_Gene:56720,ENSEMBL:ENSMUSG00000028011	MGI:1928486	protein coding gene	tryptophan 2,3-dioxygenase
3	gene	81.98229	82.02123	positive	MGI_C57BL6J_1929259	Asic5	NCBI_Gene:58170,ENSEMBL:ENSMUSG00000028008	MGI:1929259	protein coding gene	acid-sensing (proton-gated) ion channel family member 5
3	gene	82.03200	82.07471	negative	MGI_C57BL6J_1860604	Gucy1b1	NCBI_Gene:54195,ENSEMBL:ENSMUSG00000028005	MGI:1860604	protein coding gene	guanylate cyclase 1, soluble, beta 1
3	gene	82.09243	82.14588	negative	MGI_C57BL6J_1926562	Gucy1a1	NCBI_Gene:60596,ENSEMBL:ENSMUSG00000033910	MGI:1926562	protein coding gene	guanylate cyclase 1, soluble, alpha 1
3	gene	82.10625	82.10631	negative	MGI_C57BL6J_5531411	Mir7010	miRBase:MI0022859,NCBI_Gene:102466991,ENSEMBL:ENSMUSG00000098712	MGI:5531411	miRNA gene	microRNA 7010
3	gene	82.14640	82.23680	negative	MGI_C57BL6J_5589080	Gm29921	NCBI_Gene:102631626	MGI:5589080	lncRNA gene	predicted gene, 29921
3	gene	82.35803	82.39527	positive	MGI_C57BL6J_2442208	Map9	NCBI_Gene:213582,ENSEMBL:ENSMUSG00000033900	MGI:2442208	protein coding gene	microtubule-associated protein 9
3	gene	82.53838	82.54899	negative	MGI_C57BL6J_108418	Npy2r	NCBI_Gene:18167,ENSEMBL:ENSMUSG00000028004	MGI:108418	protein coding gene	neuropeptide Y receptor Y2
3	pseudogene	82.57740	82.57809	positive	MGI_C57BL6J_5594482	Gm35323	NCBI_Gene:102638861,ENSEMBL:ENSMUSG00000102514	MGI:5594482	pseudogene	predicted gene, 35323
3	gene	82.66038	82.66490	negative	MGI_C57BL6J_5589158	Gm29999	NCBI_Gene:102631733,ENSEMBL:ENSMUSG00000102629	MGI:5589158	lncRNA gene	predicted gene, 29999
3	pseudogene	82.67199	82.67257	negative	MGI_C57BL6J_5663484	Gm43347	ENSEMBL:ENSMUSG00000104772	MGI:5663484	pseudogene	predicted gene 43347
3	gene	82.75452	82.75986	positive	MGI_C57BL6J_5589202	Gm30043	ENSEMBL:ENSMUSG00000104898	MGI:5589202	lncRNA gene	predicted gene, 30043
3	gene	82.79366	82.79390	negative	MGI_C57BL6J_5451815	Gm22038	ENSEMBL:ENSMUSG00000087902	MGI:5451815	unclassified non-coding RNA gene	predicted gene, 22038
3	gene	82.79497	82.81223	negative	MGI_C57BL6J_5663485	Gm43348	ENSEMBL:ENSMUSG00000105034	MGI:5663485	lncRNA gene	predicted gene 43348
3	gene	82.83652	82.87648	negative	MGI_C57BL6J_3645057	Rbm46	NCBI_Gene:633285,ENSEMBL:ENSMUSG00000033882	MGI:3645057	protein coding gene	RNA binding motif protein 46
3	gene	82.87671	82.94364	positive	MGI_C57BL6J_1925462	Rbm46os	NCBI_Gene:78212,ENSEMBL:ENSMUSG00000086273	MGI:1925462	antisense lncRNA gene	RNA binding motif protein 46, opposite strand
3	gene	82.89258	82.90397	negative	MGI_C57BL6J_1891259	Lrat	NCBI_Gene:79235,ENSEMBL:ENSMUSG00000028003	MGI:1891259	protein coding gene	lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)
3	gene	82.92666	83.00849	negative	MGI_C57BL6J_5589256	Gm30097	NCBI_Gene:102631873,ENSEMBL:ENSMUSG00000102595	MGI:5589256	lncRNA gene	predicted gene, 30097
3	gene	83.00772	83.01506	positive	MGI_C57BL6J_95526	Fgg	NCBI_Gene:99571,ENSEMBL:ENSMUSG00000033860	MGI:95526	protein coding gene	fibrinogen gamma chain
3	gene	83.02608	83.03363	positive	MGI_C57BL6J_1316726	Fga	NCBI_Gene:14161,ENSEMBL:ENSMUSG00000028001	MGI:1316726	protein coding gene	fibrinogen alpha chain
3	gene	83.03708	83.03897	negative	MGI_C57BL6J_5622960	Gm40075	NCBI_Gene:105244473	MGI:5622960	lncRNA gene	predicted gene, 40075
3	gene	83.04014	83.04986	negative	MGI_C57BL6J_99501	Fgb	NCBI_Gene:110135,ENSEMBL:ENSMUSG00000033831	MGI:99501	protein coding gene	fibrinogen beta chain
3	gene	83.05552	83.07236	positive	MGI_C57BL6J_1858197	Plrg1	NCBI_Gene:53317,ENSEMBL:ENSMUSG00000027998	MGI:1858197	protein coding gene	pleiotropic regulator 1
3	gene	83.12528	83.12925	negative	MGI_C57BL6J_3642896	Gm10710	NCBI_Gene:100038599,ENSEMBL:ENSMUSG00000074517	MGI:3642896	lncRNA gene	predicted gene 10710
3	gene	83.12795	83.35721	positive	MGI_C57BL6J_2685263	Dchs2	NCBI_Gene:100534287,ENSEMBL:ENSMUSG00000102692	MGI:2685263	protein coding gene	dachsous cadherin related 2
3	gene	83.40340	83.40579	positive	MGI_C57BL6J_5611324	Gm38096	ENSEMBL:ENSMUSG00000103459	MGI:5611324	lncRNA gene	predicted gene, 38096
3	gene	83.55536	83.57412	negative	MGI_C57BL6J_1916710	1700028M03Rik	NCBI_Gene:69460,ENSEMBL:ENSMUSG00000101334	MGI:1916710	lncRNA gene	RIKEN cDNA 1700028M03 gene
3	gene	83.59633	83.60109	negative	MGI_C57BL6J_5622961	Gm40076	NCBI_Gene:105244474	MGI:5622961	lncRNA gene	predicted gene, 40076
3	gene	83.63458	83.63487	negative	MGI_C57BL6J_5452119	Gm22342	ENSEMBL:ENSMUSG00000084596	MGI:5452119	unclassified non-coding RNA gene	predicted gene, 22342
3	pseudogene	83.68668	83.68727	positive	MGI_C57BL6J_3781837	Rpl28-ps2	NCBI_Gene:100042091,ENSEMBL:ENSMUSG00000102137	MGI:3781837	pseudogene	ribosomal protein L28, pseudogene 2
3	gene	83.70225	83.70236	positive	MGI_C57BL6J_5454361	Gm24584	ENSEMBL:ENSMUSG00000088597	MGI:5454361	snRNA gene	predicted gene, 24584
3	gene	83.71936	83.72737	negative	MGI_C57BL6J_5589452	Gm30293	NCBI_Gene:102632140	MGI:5589452	lncRNA gene	predicted gene, 30293
3	gene	83.76616	83.77432	positive	MGI_C57BL6J_108078	Sfrp2	NCBI_Gene:20319,ENSEMBL:ENSMUSG00000027996	MGI:108078	protein coding gene	secreted frizzled-related protein 2
3	gene	83.77385	83.78996	negative	MGI_C57BL6J_5477265	Gm26771	ENSEMBL:ENSMUSG00000097250	MGI:5477265	lncRNA gene	predicted gene, 26771
3	pseudogene	83.78973	83.83222	positive	MGI_C57BL6J_3646388	Gm7115	NCBI_Gene:633522,ENSEMBL:ENSMUSG00000104082	MGI:3646388	pseudogene	predicted gene 7115
3	gene	83.83627	83.84182	negative	MGI_C57BL6J_1346060	Tlr2	NCBI_Gene:24088,ENSEMBL:ENSMUSG00000027995	MGI:1346060	protein coding gene	toll-like receptor 2

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	83.89766	84.04018	negative	MGI_C57BL6J_2443399	Tmem131l	NCBI_Gene:229473,ENSEMBL:ENSMUSG00000033767	MGI:2443399	protein coding gene	transmembrane 131 like
3	gene	84.02844	84.02928	positive	MGI_C57BL6J_1922302	4930509B17Rik	NA	NA	unclassified gene	RIKEN cDNA 4930509B17 gene
3	gene	84.04022	84.05210	positive	MGI_C57BL6J_5589511	Gm30352	NCBI_Gene:102632212	MGI:5589511	lncRNA gene	predicted gene, 30352
3	gene	84.05897	84.06345	negative	MGI_C57BL6J_5610209	Gm36981	ENSEMBL:ENSMUSG00000103261	MGI:5610209	unclassified non-coding RNA gene	predicted gene, 36981
3	gene	84.06174	84.06277	positive	MGI_C57BL6J_5589617	Gm30458	NCBI_Gene:102632366	MGI:5589617	lncRNA gene	predicted gene, 30458
3	gene	84.08793	84.15579	negative	MGI_C57BL6J_1924165	Mnd1	NCBI_Gene:76915,ENSEMBL:ENSMUSG00000033752	MGI:1924165	protein coding gene	meiotic nuclear divisions 1
3	gene	84.16044	84.30688	negative	MGI_C57BL6J_1933163	Trim2	NCBI_Gene:80890,ENSEMBL:ENSMUSG00000027993	MGI:1933163	protein coding gene	tripartite motif-containing 2
3	gene	84.17410	84.17519	positive	MGI_C57BL6J_3648757	Gm6525	NCBI_Gene:624713,ENSEMBL:ENSMUSG00000104043	MGI:3648757	protein coding gene	predicted pseudogene 6525
3	gene	84.22869	84.24704	positive	MGI_C57BL6J_5622963	Gm40078	NCBI_Gene:105244477	MGI:5622963	lncRNA gene	predicted gene, 40078
3	gene	84.22901	84.22908	negative	MGI_C57BL6J_4413878	n-TGgcc9	NCBI_Gene:102467313	MGI:4413878	tRNA gene	nuclear encoded tRNA glycine 9 (anticodon GCC)
3	gene	84.30298	84.30542	negative	MGI_C57BL6J_2443303	C630001G18Rik	NA	NA	unclassified gene	RIKEN cDNA C630001G18 gene
3	gene	84.34938	84.37992	negative	MGI_C57BL6J_1922559	4930565D16Rik	NCBI_Gene:75309,ENSEMBL:ENSMUSG00000104004	MGI:1922559	lncRNA gene	RIKEN cDNA 4930565D16 gene
3	gene	84.44219	84.48044	negative	MGI_C57BL6J_2684972	Fhdc1	NCBI_Gene:229474,ENSEMBL:ENSMUSG00000041842	MGI:2684972	protein coding gene	FH2 domain containing 1
3	gene	84.49609	84.58283	negative	MGI_C57BL6J_1277120	Arfip1	NCBI_Gene:99889,ENSEMBL:ENSMUSG00000074513	MGI:1277120	protein coding gene	ADP-ribosylation factor interacting protein 1
3	gene	84.49643	85.88752	negative	MGI_C57BL6J_5610468	Gm37240	ENSEMBL:ENSMUSG00000102805	MGI:5610468	protein coding gene	predicted gene, 37240
3	pseudogene	84.55266	84.55348	negative	MGI_C57BL6J_3645282	Gm8813	NCBI_Gene:667788,ENSEMBL:ENSMUSG00000085625	MGI:3645282	pseudogene	predicted gene 8813
3	pseudogene	84.55689	84.55779	negative	MGI_C57BL6J_5611469	Gm38241	ENSEMBL:ENSMUSG00000103741	MGI:5611469	pseudogene	predicted gene, 38241

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	86.22390	86.78269	positive	MGI_C57BL6J_1933162	Lrba	NCBI_Gene:80877,ENSEMBL:ENSMUSG00000028080	MGI:1933162	protein coding gene	LPS-responsive beige-like anchor
3	pseudogene	86.67177	86.67224	negative	MGI_C57BL6J_3781961	Gm3788	NCBI_Gene:100042319,ENSEMBL:ENSMUSG00000094392	MGI:3781961	pseudogene	predicted gene 3788
3	gene	86.76807	86.77865	negative	MGI_C57BL6J_5611104	Gm37876	ENSEMBL:ENSMUSG00000104108	MGI:5611104	lncRNA gene	predicted gene, 37876
3	gene	86.78615	86.92088	negative	MGI_C57BL6J_1918012	Dclk2	NCBI_Gene:70762,ENSEMBL:ENSMUSG00000028078	MGI:1918012	protein coding gene	doublecortin-like kinase 2
3	gene	86.82565	86.82710	negative	MGI_C57BL6J_5826447	Gm46810	NCBI_Gene:108168877	MGI:5826447	lncRNA gene	predicted gene, 46810
3	pseudogene	86.86449	86.86532	positive	MGI_C57BL6J_5610253	Gm37025	ENSEMBL:ENSMUSG00000104074	MGI:5610253	pseudogene	predicted gene, 37025
3	gene	86.93074	86.93090	positive	MGI_C57BL6J_5453153	Gm23376	ENSEMBL:ENSMUSG00000064872	MGI:5453153	snRNA gene	predicted gene, 23376
3	pseudogene	86.93337	86.93366	negative	MGI_C57BL6J_5610435	Gm37207	ENSEMBL:ENSMUSG00000103650	MGI:5610435	pseudogene	predicted gene, 37207
3	pseudogene	86.98655	86.98978	positive	MGI_C57BL6J_107675	Cd1d2	NCBI_Gene:12480,ENSEMBL:ENSMUSG00000041750	MGI:107675	polymorphic pseudogene	CD1d2 antigen
3	gene	86.99583	86.99944	negative	MGI_C57BL6J_107674	Cd1d1	NCBI_Gene:12479,ENSEMBL:ENSMUSG00000028076	MGI:107674	protein coding gene	CD1d1 antigen
3	pseudogene	87.02286	87.02396	negative	MGI_C57BL6J_3644826	Gm8869	NCBI_Gene:667897,ENSEMBL:ENSMUSG00000104265	MGI:3644826	pseudogene	predicted gene 8869
3	pseudogene	87.05436	87.05500	positive	MGI_C57BL6J_5010588	Gm18403	NCBI_Gene:100417112,ENSEMBL:ENSMUSG00000103913	MGI:5010588	pseudogene	predicted gene, 18403
3	pseudogene	87.06012	87.06043	positive	MGI_C57BL6J_5610803	Gm37575	ENSEMBL:ENSMUSG00000102394	MGI:5610803	pseudogene	predicted gene, 37575
3	gene	87.06689	87.06702	positive	MGI_C57BL6J_5454249	Gm24472	ENSEMBL:ENSMUSG00000077672	MGI:5454249	snoRNA gene	predicted gene, 24472
3	gene	87.07859	87.17475	negative	MGI_C57BL6J_1891396	Kirrel	NCBI_Gene:170643,ENSEMBL:ENSMUSG00000041734	MGI:1891396	protein coding gene	kirre like nephrin family adhesion molecule 1
3	gene	87.11060	87.11222	negative	MGI_C57BL6J_5011567	Gm19382	NA	NA	unclassified gene	predicted gene%2c 19382
3	gene	87.15769	87.16245	positive	MGI_C57BL6J_5611083	Gm37855	ENSEMBL:ENSMUSG00000102893	MGI:5611083	lncRNA gene	predicted gene, 37855
3	pseudogene	87.20734	87.20803	negative	MGI_C57BL6J_3708678	Gm10705	NCBI_Gene:100042355,ENSEMBL:ENSMUSG00000074506	MGI:3708678	pseudogene	predicted gene 10705
3	gene	87.25076	87.26377	negative	MGI_C57BL6J_1933397	Fcrls	NCBI_Gene:80891,ENSEMBL:ENSMUSG00000015852	MGI:1933397	protein coding gene	Fc receptor-like S, scavenger receptor
3	gene	87.29034	87.30091	positive	MGI_C57BL6J_5591038	Gm31879	NCBI_Gene:102634249	MGI:5591038	lncRNA gene	predicted gene, 31879
3	gene	87.35400	87.37760	negative	MGI_C57BL6J_5591099	Gm31940	NCBI_Gene:102634332	MGI:5591099	lncRNA gene	predicted gene, 31940
3	gene	87.35788	87.37107	positive	MGI_C57BL6J_1334419	Cd5l	NCBI_Gene:11801,ENSEMBL:ENSMUSG00000015854	MGI:1334419	protein coding gene	CD5 antigen-like
3	gene	87.37634	87.40397	positive	MGI_C57BL6J_2442862	Fcrl1	NCBI_Gene:229499,ENSEMBL:ENSMUSG00000059994	MGI:2442862	protein coding gene	Fc receptor-like 1
3	gene	87.41141	87.41479	positive	MGI_C57BL6J_5622969	Gm40084	NCBI_Gene:105244483	MGI:5622969	lncRNA gene	predicted gene, 40084
3	gene	87.43577	87.50068	positive	MGI_C57BL6J_3053558	Fcrl5	NCBI_Gene:329693,ENSEMBL:ENSMUSG00000048031	MGI:3053558	protein coding gene	Fc receptor-like 5
3	gene	87.48702	87.51219	negative	MGI_C57BL6J_5622970	Gm40085	NCBI_Gene:105244484	MGI:5622970	lncRNA gene	predicted gene, 40085
3	gene	87.50853	87.51318	positive	MGI_C57BL6J_5591157	Gm31998	NCBI_Gene:102634410	MGI:5591157	lncRNA gene	predicted gene, 31998
3	gene	87.52541	87.54016	positive	MGI_C57BL6J_1350926	Etv3	NCBI_Gene:27049,ENSEMBL:ENSMUSG00000003382	MGI:1350926	protein coding gene	ets variant 3
3	gene	87.54988	87.56110	positive	MGI_C57BL6J_3646099	Etv3l	NCBI_Gene:546801,ENSEMBL:ENSMUSG00000104058	MGI:3646099	protein coding gene	ets variant 3-like
3	gene	87.58267	87.58279	negative	MGI_C57BL6J_5454944	Gm25167	ENSEMBL:ENSMUSG00000077376	MGI:5454944	snoRNA gene	predicted gene, 25167
3	gene	87.61740	87.61750	positive	MGI_C57BL6J_5453886	Gm24109	ENSEMBL:ENSMUSG00000093230	MGI:5453886	miRNA gene	predicted gene, 24109
3	gene	87.61755	87.73803	positive	MGI_C57BL6J_2441869	Arhgef11	NCBI_Gene:213498,ENSEMBL:ENSMUSG00000041977	MGI:2441869	protein coding gene	Rho guanine nucleotide exchange factor (GEF) 11
3	pseudogene	87.64843	87.64867	negative	MGI_C57BL6J_5011427	Gm19242	NCBI_Gene:100462734	MGI:5011427	pseudogene	predicted gene, 19242
3	gene	87.67964	87.68003	negative	MGI_C57BL6J_3644100	Gm6570	NCBI_Gene:625281	MGI:3644100	protein coding gene	predicted gene 6570
3	gene	87.73692	87.74863	negative	MGI_C57BL6J_1921735	Lrrc71	NCBI_Gene:74485,ENSEMBL:ENSMUSG00000023084	MGI:1921735	protein coding gene	leucine rich repeat containing 71
3	gene	87.74789	87.82431	negative	MGI_C57BL6J_1920432	Pear1	NCBI_Gene:73182,ENSEMBL:ENSMUSG00000028073	MGI:1920432	protein coding gene	platelet endothelial aggregation receptor 1
3	gene	87.77824	87.79524	negative	MGI_C57BL6J_97383	Ntrk1	NCBI_Gene:18211,ENSEMBL:ENSMUSG00000028072	MGI:97383	protein coding gene	neurotrophic tyrosine kinase, receptor, type 1
3	gene	87.79691	87.81610	positive	MGI_C57BL6J_1346037	Insrr	NCBI_Gene:23920,ENSEMBL:ENSMUSG00000005640	MGI:1346037	protein coding gene	insulin receptor-related receptor
3	gene	87.82054	87.82307	positive	MGI_C57BL6J_5622971	Gm40086	NCBI_Gene:105244485	MGI:5622971	lncRNA gene	predicted gene, 40086
3	gene	87.82475	87.83127	positive	MGI_C57BL6J_5591629	Gm32470	NCBI_Gene:105244486	MGI:5591629	lncRNA gene	predicted gene, 32470
3	gene	87.84676	87.85572	positive	MGI_C57BL6J_1351596	Sh2d2a	NCBI_Gene:27371,ENSEMBL:ENSMUSG00000028071	MGI:1351596	protein coding gene	SH2 domain containing 2A
3	gene	87.85890	87.88561	negative	MGI_C57BL6J_2137738	Prcc	NCBI_Gene:94315,ENSEMBL:ENSMUSG00000004895	MGI:2137738	protein coding gene	papillary renal cell carcinoma (translocation-associated)
3	gene	87.90632	87.91613	positive	MGI_C57BL6J_1194494	Hdgf	NCBI_Gene:15191,ENSEMBL:ENSMUSG00000004897	MGI:1194494	protein coding gene	heparin binding growth factor
3	gene	87.91813	87.92367	positive	MGI_C57BL6J_1914957	Mrpl24	NCBI_Gene:67707,ENSEMBL:ENSMUSG00000019710	MGI:1914957	protein coding gene	mitochondrial ribosomal protein L24
3	gene	87.92260	87.93072	negative	MGI_C57BL6J_2387197	Rrnad1	NCBI_Gene:229503,ENSEMBL:ENSMUSG00000004896	MGI:2387197	protein coding gene	ribosomal RNA adenine dimethylase domain containing 1
3	gene	87.93031	87.94069	positive	MGI_C57BL6J_2140076	Isg20l2	NCBI_Gene:229504,ENSEMBL:ENSMUSG00000048039	MGI:2140076	protein coding gene	interferon stimulated exonuclease gene 20-like 2
3	gene	87.94867	87.95338	positive	MGI_C57BL6J_88491	Crabp2	NCBI_Gene:12904,ENSEMBL:ENSMUSG00000004885	MGI:88491	protein coding gene	cellular retinoic acid binding protein II
3	gene	87.96008	87.96573	positive	MGI_C57BL6J_5591677	Gm32518	NCBI_Gene:102635095	MGI:5591677	lncRNA gene	predicted gene, 32518
3	pseudogene	87.96676	87.96869	positive	MGI_C57BL6J_3781920	Gm3745	NCBI_Gene:100042242,ENSEMBL:ENSMUSG00000103792	MGI:3781920	pseudogene	predicted gene 3745
3	gene	87.97108	87.98045	positive	MGI_C57BL6J_101784	Nes	NCBI_Gene:18008,ENSEMBL:ENSMUSG00000004891	MGI:101784	protein coding gene	nestin
3	gene	87.98753	88.00089	negative	MGI_C57BL6J_1096385	Bcan	NCBI_Gene:12032,ENSEMBL:ENSMUSG00000004892	MGI:1096385	protein coding gene	brevican
3	gene	88.02056	88.02758	negative	MGI_C57BL6J_2137300	Hapln2	NCBI_Gene:73940,ENSEMBL:ENSMUSG00000004894	MGI:2137300	protein coding gene	hyaluronan and proteoglycan link protein 2
3	gene	88.03078	88.03621	positive	MGI_C57BL6J_5011624	Gm19439	NCBI_Gene:105244487,ENSEMBL:ENSMUSG00000105843	MGI:5011624	lncRNA gene	predicted gene, 19439
3	gene	88.04311	88.05599	positive	MGI_C57BL6J_1913864	Gpatch4	NCBI_Gene:66614,ENSEMBL:ENSMUSG00000028069	MGI:1913864	protein coding gene	G patch domain containing 4
3	gene	88.05652	88.05854	negative	MGI_C57BL6J_2180167	Naxe	NCBI_Gene:246703,ENSEMBL:ENSMUSG00000028070	MGI:2180167	protein coding gene	NAD(P)HX epimerase
3	gene	88.06941	88.07830	negative	MGI_C57BL6J_2443841	Ttc24	NCBI_Gene:214191,ENSEMBL:ENSMUSG00000051036	MGI:2443841	protein coding gene	tetratricopeptide repeat domain 24
3	gene	88.08197	88.12105	positive	MGI_C57BL6J_3028642	Iqgap3	NCBI_Gene:404710,ENSEMBL:ENSMUSG00000028068	MGI:3028642	protein coding gene	IQ motif containing GTPase activating protein 3
3	gene	88.13352	88.13842	positive	MGI_C57BL6J_5622972	Gm40087	NCBI_Gene:105244489	MGI:5622972	lncRNA gene	predicted gene, 40087
3	gene	88.14197	88.17209	positive	MGI_C57BL6J_99533	Mef2d	NCBI_Gene:17261,ENSEMBL:ENSMUSG00000001419	MGI:99533	protein coding gene	myocyte enhancer factor 2D
3	gene	88.17156	88.17779	negative	MGI_C57BL6J_1923892	1700113A16Rik	NCBI_Gene:76642,ENSEMBL:ENSMUSG00000096935	MGI:1923892	lncRNA gene	RIKEN cDNA 1700113A16 gene
3	gene	88.19910	88.20459	negative	MGI_C57BL6J_2139818	AI849053	ENSEMBL:ENSMUSG00000097280	MGI:2139818	lncRNA gene	expressed sequence AI849053
3	gene	88.20020	88.20348	positive	MGI_C57BL6J_2139951	AW047730	NCBI_Gene:99870,ENSEMBL:ENSMUSG00000097428	MGI:2139951	lncRNA gene	expressed sequence AW047730
3	gene	88.20577	88.22996	positive	MGI_C57BL6J_3781938	Gm3764	NCBI_Gene:100042277,ENSEMBL:ENSMUSG00000097156	MGI:3781938	lncRNA gene	predicted gene 3764
3	gene	88.21517	88.21526	positive	MGI_C57BL6J_4834307	Mir3093	miRBase:MI0014086,NCBI_Gene:100526540,ENSEMBL:ENSMUSG00000092988	MGI:4834307	miRNA gene	microRNA 3093
3	gene	88.21559	88.21570	negative	MGI_C57BL6J_5455418	Gm25641	ENSEMBL:ENSMUSG00000092876	MGI:5455418	miRNA gene	predicted gene, 25641
3	gene	88.21560	88.21569	positive	MGI_C57BL6J_2676911	Mir9-1	miRBase:MI0000720,NCBI_Gene:387133,ENSEMBL:ENSMUSG00000106493	MGI:2676911	miRNA gene	microRNA 9-1
3	gene	88.22741	88.23234	negative	MGI_C57BL6J_1918213	4931402H11Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 4931402H11 gene
3	gene	88.24287	88.25474	negative	MGI_C57BL6J_1927379	Rhbg	NCBI_Gene:58176,ENSEMBL:ENSMUSG00000104445	MGI:1927379	protein coding gene	Rhesus blood group-associated B glycoprotein
3	gene	88.24338	88.28721	negative	MGI_C57BL6J_5613632	Gm38392	ENSEMBL:ENSMUSG00000103766	MGI:5613632	protein coding gene	predicted gene, 38392
3	gene	88.28275	88.29701	negative	MGI_C57BL6J_1924177	Tsacc	NCBI_Gene:76927,ENSEMBL:ENSMUSG00000010538	MGI:1924177	protein coding gene	TSSK6 activating co-chaperone
3	pseudogene	88.28461	88.28475	negative	MGI_C57BL6J_5610344	Gm37116	ENSEMBL:ENSMUSG00000103574	MGI:5610344	pseudogene	predicted gene, 37116
3	gene	88.29712	88.32177	positive	MGI_C57BL6J_104708	Cct3	NCBI_Gene:12462,ENSEMBL:ENSMUSG00000001416	MGI:104708	protein coding gene	chaperonin containing Tcp1, subunit 3 (gamma)
3	gene	88.32502	88.33131	positive	MGI_C57BL6J_1913318	Glmp	NCBI_Gene:56700,ENSEMBL:ENSMUSG00000001418	MGI:1913318	protein coding gene	glycosylated lysosomal membrane protein
3	gene	88.32865	88.33615	negative	MGI_C57BL6J_1919163	Tmem79	NCBI_Gene:71913,ENSEMBL:ENSMUSG00000001420	MGI:1919163	protein coding gene	transmembrane protein 79
3	gene	88.33474	88.33618	negative	MGI_C57BL6J_3040675	BC038331	NA	NA	unclassified gene	cDNA sequence BC038331
3	gene	88.33626	88.36234	positive	MGI_C57BL6J_2447364	Smg5	NCBI_Gene:229512,ENSEMBL:ENSMUSG00000001415	MGI:2447364	protein coding gene	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
3	gene	88.36407	88.36854	positive	MGI_C57BL6J_1916207	Paqr6	NCBI_Gene:68957,ENSEMBL:ENSMUSG00000041423	MGI:1916207	protein coding gene	progestin and adipoQ receptor family member VI
3	gene	88.36862	88.37274	negative	MGI_C57BL6J_88155	Bglap3	NCBI_Gene:12095,ENSEMBL:ENSMUSG00000074489	MGI:88155	protein coding gene	bone gamma-carboxyglutamate protein 3
3	pseudogene	88.37581	88.38293	positive	MGI_C57BL6J_5439425	Gm21956	NCBI_Gene:101055651,NCBI_Gene:108168878,ENSEMBL:ENSMUSG00000096792	MGI:5439425	pseudogene	predicted gene, 21956
3	gene	88.37774	88.37870	negative	MGI_C57BL6J_88157	Bglap2	NCBI_Gene:12097,ENSEMBL:ENSMUSG00000074486	MGI:88157	protein coding gene	bone gamma-carboxyglutamate protein 2
3	pseudogene	88.38163	88.38293	positive	MGI_C57BL6J_3779634	Gm6821	NCBI_Gene:101055651,ENSEMBL:ENSMUSG00000078691	MGI:3779634	pseudogene	predicted gene 6821
3	gene	88.38349	88.38447	negative	MGI_C57BL6J_88156	Bglap	NCBI_Gene:12096,ENSEMBL:ENSMUSG00000074483	MGI:88156	protein coding gene	bone gamma carboxyglutamate protein
3	gene	88.39414	88.41040	negative	MGI_C57BL6J_1914287	Pmf1	NCBI_Gene:67037,ENSEMBL:ENSMUSG00000028066	MGI:1914287	protein coding gene	polyamine-modulated factor 1
3	gene	88.41049	88.42514	negative	MGI_C57BL6J_2444391	Slc25a44	NCBI_Gene:229517,ENSEMBL:ENSMUSG00000050144	MGI:2444391	protein coding gene	solute carrier family 25, member 44
3	gene	88.42508	88.42867	positive	MGI_C57BL6J_5592672	Gm33513	NCBI_Gene:102636453	MGI:5592672	lncRNA gene	predicted gene, 33513
3	pseudogene	88.42894	88.42939	positive	MGI_C57BL6J_5662951	Gm42814	ENSEMBL:ENSMUSG00000106568	MGI:5662951	pseudogene	predicted gene 42814
3	gene	88.43596	88.46118	negative	MGI_C57BL6J_107560	Sema4a	NCBI_Gene:20351,ENSEMBL:ENSMUSG00000028064	MGI:107560	protein coding gene	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
3	gene	88.44088	88.44095	negative	MGI_C57BL6J_5531059	Mir7011	miRBase:MI0022860,NCBI_Gene:102465611,ENSEMBL:ENSMUSG00000098655	MGI:5531059	miRNA gene	microRNA 7011
3	gene	88.46209	88.46613	negative	MGI_C57BL6J_5622974	Gm40089	NCBI_Gene:105244492	MGI:5622974	lncRNA gene	predicted gene, 40089
3	pseudogene	88.47454	88.47535	positive	MGI_C57BL6J_3643641	Gm5979	NCBI_Gene:546802,ENSEMBL:ENSMUSG00000103304	MGI:3643641	pseudogene	predicted gene 5979
3	gene	88.48015	88.50996	negative	MGI_C57BL6J_96794	Lmna	NCBI_Gene:16905,ENSEMBL:ENSMUSG00000028063	MGI:96794	protein coding gene	lamin A
3	gene	88.52607	88.52736	negative	MGI_C57BL6J_5610812	Gm37584	ENSEMBL:ENSMUSG00000103115	MGI:5610812	lncRNA gene	predicted gene, 37584
3	gene	88.52927	88.53179	negative	MGI_C57BL6J_5621503	Gm38618	NCBI_Gene:102642612	MGI:5621503	lncRNA gene	predicted gene, 38618
3	gene	88.53239	88.54140	positive	MGI_C57BL6J_1919890	Mex3a	NCBI_Gene:72640,ENSEMBL:ENSMUSG00000074480	MGI:1919890	protein coding gene	mex3 RNA binding family member A
3	gene	88.53630	88.53638	negative	MGI_C57BL6J_3811408	Mir1905	miRBase:MI0008315,NCBI_Gene:100316808,ENSEMBL:ENSMUSG00000084728	MGI:3811408	miRNA gene	microRNA 1905
3	gene	88.54203	88.54830	negative	MGI_C57BL6J_1858203	Rab25	NCBI_Gene:53868,ENSEMBL:ENSMUSG00000008601	MGI:1858203	protein coding gene	RAB25, member RAS oncogene family
3	gene	88.54982	88.55307	negative	MGI_C57BL6J_1932697	Lamtor2	NCBI_Gene:83409,ENSEMBL:ENSMUSG00000028062	MGI:1932697	protein coding gene	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
3	gene	88.55368	88.56973	positive	MGI_C57BL6J_2150152	Ubqln4	NCBI_Gene:94232,ENSEMBL:ENSMUSG00000008604	MGI:2150152	protein coding gene	ubiquilin 4
3	gene	88.57588	88.58842	positive	MGI_C57BL6J_1913506	Ssr2	NCBI_Gene:66256,ENSEMBL:ENSMUSG00000041355	MGI:1913506	protein coding gene	signal sequence receptor, beta
3	pseudogene	88.57624	88.57720	negative	MGI_C57BL6J_3642446	Rtraf-ps	NCBI_Gene:545536,ENSEMBL:ENSMUSG00000074479	MGI:3642446	pseudogene	RNA transcription, translation and transport factor, pseudogene
3	gene	88.59311	88.64953	positive	MGI_C57BL6J_103264	Arhgef2	NCBI_Gene:16800,ENSEMBL:ENSMUSG00000028059	MGI:103264	protein coding gene	rho/rac guanine nucleotide exchange factor (GEF) 2
3	gene	88.60667	88.60722	negative	MGI_C57BL6J_5622975	Gm40090	NCBI_Gene:105244493	MGI:5622975	lncRNA gene	predicted gene, 40090
3	gene	88.61646	88.62111	negative	MGI_C57BL6J_5313099	Gm20652	NCBI_Gene:102636610,ENSEMBL:ENSMUSG00000093390	MGI:5313099	lncRNA gene	predicted gene 20652
3	gene	88.65190	88.65314	negative	MGI_C57BL6J_2182926	Rxfp4	NCBI_Gene:242093,ENSEMBL:ENSMUSG00000049741	MGI:2182926	protein coding gene	relaxin family peptide receptor 4
3	gene	88.68502	88.68640	negative	MGI_C57BL6J_5663851	Gm43714	ENSEMBL:ENSMUSG00000105512	MGI:5663851	lncRNA gene	predicted gene 43714
3	gene	88.68578	88.71293	positive	MGI_C57BL6J_1921450	Khdc4	NCBI_Gene:74200,ENSEMBL:ENSMUSG00000028060	MGI:1921450	protein coding gene	KH domain containing 4, pre-mRNA splicing factor
3	gene	88.69393	88.69406	positive	MGI_C57BL6J_5455597	Gm25820	ENSEMBL:ENSMUSG00000105288,ENSEMBL:ENSMUSG00000105448	MGI:5455597	snoRNA gene	predicted gene, 25820
3	gene	88.70716	88.70729	positive	MGI_C57BL6J_5455722	Gm25945	ENSEMBL:ENSMUSG00000084433	MGI:5455722	snoRNA gene	predicted gene, 25945
3	gene	88.71684	88.73105	positive	MGI_C57BL6J_108053	Rit1	NCBI_Gene:19769,ENSEMBL:ENSMUSG00000028057	MGI:108053	protein coding gene	Ras-like without CAAX 1
3	gene	88.72209	88.72267	positive	MGI_C57BL6J_4937973	Gm17146	ENSEMBL:ENSMUSG00000091881	MGI:4937973	lncRNA gene	predicted gene 17146
3	gene	88.73875	88.73969	negative	MGI_C57BL6J_3641796	Gm10253	ENSEMBL:ENSMUSG00000104333	MGI:3641796	unclassified gene	predicted gene 10253
3	gene	88.74470	88.77516	negative	MGI_C57BL6J_1859547	Syt11	NCBI_Gene:229521,ENSEMBL:ENSMUSG00000068923	MGI:1859547	protein coding gene	synaptotagmin XI
3	pseudogene	88.77522	88.82937	positive	MGI_C57BL6J_1923272	5830417I10Rik	NCBI_Gene:100302730,ENSEMBL:ENSMUSG00000078684	MGI:1923272	pseudogene	RIKEN cDNA 5830417I10 gene
3	gene	88.78294	88.83255	negative	MGI_C57BL6J_2442808	1500004A13Rik	NCBI_Gene:319830,ENSEMBL:ENSMUSG00000098912	MGI:2442808	lncRNA gene	RIKEN cDNA 1500004A13 gene
3	gene	88.83097	88.91010	positive	MGI_C57BL6J_1917579	Gon4l	NCBI_Gene:76022,ENSEMBL:ENSMUSG00000054199	MGI:1917579	protein coding gene	gon-4-like (C.elegans)
3	gene	88.84503	88.90000	negative	MGI_C57BL6J_5663850	Gm43713	ENSEMBL:ENSMUSG00000106218	MGI:5663850	lncRNA gene	predicted gene 43713
3	gene	88.86292	88.86308	positive	MGI_C57BL6J_5452831	Gm23054	ENSEMBL:ENSMUSG00000064738	MGI:5452831	snRNA gene	predicted gene, 23054
3	gene	88.88092	88.89994	negative	MGI_C57BL6J_5622976	Gm40091	NCBI_Gene:105244494	MGI:5622976	lncRNA gene	predicted gene, 40091
3	gene	88.90511	88.91400	negative	MGI_C57BL6J_2385175	Msto1	NCBI_Gene:229524,ENSEMBL:ENSMUSG00000068922	MGI:2385175	protein coding gene	misato 1, mitochondrial distribution and morphology regulator
3	gene	88.90651	88.90663	positive	MGI_C57BL6J_4422062	n-R5s197	ENSEMBL:ENSMUSG00000065236	MGI:4422062	rRNA gene	nuclear encoded rRNA 5S 197
3	gene	88.92080	88.95120	negative	MGI_C57BL6J_1929538	Dap3	NCBI_Gene:65111,ENSEMBL:ENSMUSG00000068921	MGI:1929538	protein coding gene	death associated protein 3
3	gene	88.95049	89.07937	positive	MGI_C57BL6J_2183158	Ash1l	NCBI_Gene:192195,ENSEMBL:ENSMUSG00000028053	MGI:2183158	protein coding gene	ASH1 like histone lysine methyltransferase
3	gene	88.97062	88.97073	negative	MGI_C57BL6J_5456242	Gm26465	ENSEMBL:ENSMUSG00000095712	MGI:5456242	snRNA gene	predicted gene, 26465
3	gene	89.04900	89.04913	negative	MGI_C57BL6J_5454180	Gm24403	ENSEMBL:ENSMUSG00000077804	MGI:5454180	snoRNA gene	predicted gene, 24403
3	gene	89.08194	89.10110	negative	MGI_C57BL6J_5663875	Gm43738	ENSEMBL:ENSMUSG00000105204	MGI:5663875	protein coding gene	predicted gene 43738
3	gene	89.08397	89.09336	negative	MGI_C57BL6J_1919546	Rusc1	NCBI_Gene:72296,ENSEMBL:ENSMUSG00000041263	MGI:1919546	protein coding gene	RUN and SH3 domain containing 1
3	gene	89.09359	89.10197	negative	MGI_C57BL6J_104888	Fdps	NCBI_Gene:110196,ENSEMBL:ENSMUSG00000059743	MGI:104888	protein coding gene	farnesyl diphosphate synthetase
3	gene	89.09791	89.09801	negative	MGI_C57BL6J_5452712	Gm22935	ENSEMBL:ENSMUSG00000077148	MGI:5452712	snRNA gene	predicted gene, 22935
3	pseudogene	89.11669	89.11702	positive	MGI_C57BL6J_5588863	Gm29704	NCBI_Gene:101055641,ENSEMBL:ENSMUSG00000105654	MGI:5588863	pseudogene	predicted gene, 29704
3	gene	89.13613	89.14678	positive	MGI_C57BL6J_97604	Pklr	NCBI_Gene:18770,ENSEMBL:ENSMUSG00000041237	MGI:97604	protein coding gene	pyruvate kinase liver and red blood cell
3	gene	89.14607	89.16023	negative	MGI_C57BL6J_1298211	Hcn3	NCBI_Gene:15168,ENSEMBL:ENSMUSG00000028051	MGI:1298211	protein coding gene	hyperpolarization-activated, cyclic nucleotide-gated K+ 3
3	gene	89.16479	89.17709	positive	MGI_C57BL6J_1098669	Clk2	NCBI_Gene:12748,ENSEMBL:ENSMUSG00000068917	MGI:1098669	protein coding gene	CDC-like kinase 2
3	gene	89.16479	89.18277	positive	MGI_C57BL6J_5825564	Gm45927	NCBI_Gene:105943584	MGI:5825564	protein coding gene	predicted gene, 45927
3	gene	89.17739	89.18277	positive	MGI_C57BL6J_1346346	Scamp3	NCBI_Gene:24045,ENSEMBL:ENSMUSG00000028049	MGI:1346346	protein coding gene	secretory carrier membrane protein 3
3	gene	89.18076	89.18410	negative	MGI_C57BL6J_3801823	Gm16069	NCBI_Gene:102636781,ENSEMBL:ENSMUSG00000086718	MGI:3801823	lncRNA gene	predicted gene 16069
3	gene	89.18314	89.18930	positive	MGI_C57BL6J_1915771	Fam189b	NCBI_Gene:68521,ENSEMBL:ENSMUSG00000032657	MGI:1915771	protein coding gene	family with sequence similarity 189, member B
3	gene	89.20117	89.20127	negative	MGI_C57BL6J_5453046	Gm23269	ENSEMBL:ENSMUSG00000094489	MGI:5453046	snRNA gene	predicted gene, 23269
3	gene	89.20291	89.20897	positive	MGI_C57BL6J_95665	Gba	NCBI_Gene:14466,ENSEMBL:ENSMUSG00000028048	MGI:95665	protein coding gene	glucosidase, beta, acid
3	gene	89.20908	89.22709	negative	MGI_C57BL6J_103025	Mtx1	NCBI_Gene:17827,ENSEMBL:ENSMUSG00000064068	MGI:103025	protein coding gene	metaxin 1
3	gene	89.21043	89.21316	positive	MGI_C57BL6J_5663874	Gm43737	ENSEMBL:ENSMUSG00000105692	MGI:5663874	unclassified gene	predicted gene 43737
3	gene	89.21481	89.22684	positive	MGI_C57BL6J_98739	Thbs3	NCBI_Gene:21827,ENSEMBL:ENSMUSG00000028047	MGI:98739	protein coding gene	thrombospondin 3
3	gene	89.22712	89.22720	negative	MGI_C57BL6J_3718577	Mir92b	miRBase:MI0005521,NCBI_Gene:100124470,ENSEMBL:ENSMUSG00000076255	MGI:3718577	miRNA gene	microRNA 92b
3	gene	89.22906	89.23338	positive	MGI_C57BL6J_97231	Muc1	NCBI_Gene:17829,ENSEMBL:ENSMUSG00000042784	MGI:97231	protein coding gene	mucin 1, transmembrane
3	gene	89.23417	89.24631	negative	MGI_C57BL6J_2673000	Trim46	NCBI_Gene:360213,ENSEMBL:ENSMUSG00000042766	MGI:2673000	protein coding gene	tripartite motif-containing 46
3	gene	89.24597	89.24991	positive	MGI_C57BL6J_1913309	Krtcap2	NCBI_Gene:66059,ENSEMBL:ENSMUSG00000042747	MGI:1913309	protein coding gene	keratinocyte associated protein 2
3	gene	89.25926	89.26708	positive	MGI_C57BL6J_1915813	Dpm3	NCBI_Gene:68563,ENSEMBL:ENSMUSG00000042737	MGI:1915813	protein coding gene	dolichyl-phosphate mannosyltransferase polypeptide 3
3	gene	89.26825	89.27057	negative	MGI_C57BL6J_107417	Slc50a1	NCBI_Gene:19729,ENSEMBL:ENSMUSG00000027953	MGI:107417	protein coding gene	solute carrier family 50 (sugar transporter), member 1
3	gene	89.27173	89.28114	negative	MGI_C57BL6J_103236	Efna1	NCBI_Gene:13636,ENSEMBL:ENSMUSG00000027954	MGI:103236	protein coding gene	ephrin A1
3	gene	89.29054	89.30290	negative	MGI_C57BL6J_5593004	Gm33845	NCBI_Gene:102636898	MGI:5593004	lncRNA gene	predicted gene, 33845
3	gene	89.30248	89.30273	positive	MGI_C57BL6J_5452419	Gm22642	ENSEMBL:ENSMUSG00000093093	MGI:5452419	unclassified non-coding RNA gene	predicted gene, 22642
3	gene	89.30324	89.31422	positive	MGI_C57BL6J_5593173	Gm34014	NCBI_Gene:102637122	MGI:5593173	lncRNA gene	predicted gene, 34014
3	gene	89.31390	89.32296	negative	MGI_C57BL6J_106644	Efna3	NCBI_Gene:13638,ENSEMBL:ENSMUSG00000028039	MGI:106644	protein coding gene	ephrin A3
3	gene	89.31544	89.31891	positive	MGI_C57BL6J_3802094	Gm15998	ENSEMBL:ENSMUSG00000086389	MGI:3802094	lncRNA gene	predicted gene 15998
3	gene	89.32590	89.33117	negative	MGI_C57BL6J_5593277	Gm34118	NCBI_Gene:102637253	MGI:5593277	lncRNA gene	predicted gene, 34118
3	gene	89.33339	89.33803	negative	MGI_C57BL6J_106643	Efna4	NCBI_Gene:13639,ENSEMBL:ENSMUSG00000028040	MGI:106643	protein coding gene	ephrin A4
3	gene	89.33785	89.34783	positive	MGI_C57BL6J_3704222	4731419I09Rik	ENSEMBL:ENSMUSG00000097004	MGI:3704222	lncRNA gene	RIKEN cDNA 4731419I09 gene
3	gene	89.33854	89.35003	negative	MGI_C57BL6J_1333882	Adam15	NCBI_Gene:11490,ENSEMBL:ENSMUSG00000028041	MGI:1333882	protein coding gene	a disintegrin and metallopeptidase domain 15 (metargidin)
3	gene	89.35022	89.36525	negative	MGI_C57BL6J_1925022	Dcst1	NCBI_Gene:77772,ENSEMBL:ENSMUSG00000042672	MGI:1925022	protein coding gene	DC-STAMP domain containing 1
3	gene	89.35042	89.37764	positive	MGI_C57BL6J_2685606	Dcst2	NCBI_Gene:329702,ENSEMBL:ENSMUSG00000109293	MGI:2685606	protein coding gene	DC-STAMP domain containing 2
3	pseudogene	89.35363	89.35490	positive	MGI_C57BL6J_3708679	Gm10702	ENSEMBL:ENSMUSG00000074467	MGI:3708679	pseudogene	predicted gene 10702
3	gene	89.37764	89.39481	negative	MGI_C57BL6J_102755	Zbtb7b	NCBI_Gene:22724,ENSEMBL:ENSMUSG00000028042	MGI:102755	protein coding gene	zinc finger and BTB domain containing 7B
3	gene	89.39185	89.39878	positive	MGI_C57BL6J_3642531	Gm15417	NCBI_Gene:545539,ENSEMBL:ENSMUSG00000074466	MGI:3642531	lncRNA gene	predicted gene 15417
3	gene	89.40099	89.40279	negative	MGI_C57BL6J_1930020	Lenep	NCBI_Gene:57275,ENSEMBL:ENSMUSG00000078173	MGI:1930020	protein coding gene	lens epithelial protein
3	gene	89.40100	89.41187	negative	MGI_C57BL6J_2443030	Flad1	NCBI_Gene:319945,ENSEMBL:ENSMUSG00000042642	MGI:2443030	protein coding gene	flavin adenine dinucleotide synthetase 1
3	gene	89.41547	89.41838	negative	MGI_C57BL6J_1889208	Cks1b	NCBI_Gene:54124,ENSEMBL:ENSMUSG00000028044	MGI:1889208	protein coding gene	CDC28 protein kinase 1b
3	gene	89.41840	89.43003	positive	MGI_C57BL6J_98296	Shc1	NCBI_Gene:20416,ENSEMBL:ENSMUSG00000042626	MGI:98296	protein coding gene	src homology 2 domain-containing transforming protein C1
3	gene	89.43012	89.43513	positive	MGI_C57BL6J_1916161	Pygo2	NCBI_Gene:68911,ENSEMBL:ENSMUSG00000047824	MGI:1916161	protein coding gene	pygopus 2
3	gene	89.43667	89.45095	positive	MGI_C57BL6J_2441670	Pbxip1	NCBI_Gene:229534,ENSEMBL:ENSMUSG00000042613	MGI:2441670	protein coding gene	pre B cell leukemia transcription factor interacting protein 1
3	gene	89.45077	89.45094	positive	MGI_C57BL6J_1916805	2310033F14Rik	NA	NA	unclassified gene	RIKEN cDNA 2310033F14 gene
3	gene	89.45454	89.46901	positive	MGI_C57BL6J_1915853	Pmvk	NCBI_Gene:68603,ENSEMBL:ENSMUSG00000027952	MGI:1915853	protein coding gene	phosphomevalonate kinase
3	gene	89.52016	89.67513	positive	MGI_C57BL6J_2153183	Kcnn3	NCBI_Gene:140493,ENSEMBL:ENSMUSG00000000794	MGI:2153183	protein coding gene	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
3	gene	89.71502	89.75346	positive	MGI_C57BL6J_1889575	Adar	NCBI_Gene:56417,ENSEMBL:ENSMUSG00000027951	MGI:1889575	protein coding gene	adenosine deaminase, RNA-specific
3	gene	89.74620	89.76463	negative	MGI_C57BL6J_87891	Chrnb2	NCBI_Gene:11444,ENSEMBL:ENSMUSG00000027950	MGI:87891	protein coding gene	cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)
3	gene	89.76751	89.77340	negative	MGI_C57BL6J_1921284	4632404H12Rik	NCBI_Gene:74034,ENSEMBL:ENSMUSG00000042579	MGI:1921284	lncRNA gene	RIKEN cDNA 4632404H12 gene
3	gene	89.77361	89.78400	positive	MGI_C57BL6J_1917343	Ube2q1	NCBI_Gene:70093,ENSEMBL:ENSMUSG00000042572	MGI:1917343	protein coding gene	ubiquitin-conjugating enzyme E2Q family member 1
3	pseudogene	89.81948	89.82168	positive	MGI_C57BL6J_3645290	Gm8969	NCBI_Gene:668087,ENSEMBL:ENSMUSG00000106564	MGI:3645290	pseudogene	predicted gene 8969
3	gene	89.83137	89.85885	positive	MGI_C57BL6J_1099462	She	NCBI_Gene:214547,ENSEMBL:ENSMUSG00000046280	MGI:1099462	protein coding gene	src homology 2 domain-containing transforming protein E
3	gene	89.86406	89.91320	negative	MGI_C57BL6J_105304	Il6ra	NCBI_Gene:16194,ENSEMBL:ENSMUSG00000027947	MGI:105304	protein coding gene	interleukin 6 receptor, alpha
3	gene	89.87208	89.89024	positive	MGI_C57BL6J_5826448	Gm46811	NCBI_Gene:108168879	MGI:5826448	lncRNA gene	predicted gene, 46811
3	gene	89.91292	89.91405	positive	MGI_C57BL6J_5662946	Gm42809	ENSEMBL:ENSMUSG00000105941	MGI:5662946	lncRNA gene	predicted gene 42809
3	gene	89.93948	89.96351	negative	MGI_C57BL6J_1859660	Atp8b2	NCBI_Gene:54667,ENSEMBL:ENSMUSG00000060671	MGI:1859660	protein coding gene	ATPase, class I, type 8B, member 2
3	pseudogene	89.96344	89.96973	negative	MGI_C57BL6J_4356425	Aqp10-ps	NCBI_Gene:435743,ENSEMBL:ENSMUSG00000105082	MGI:4356425	pseudogene	aquaporin 10, pseudogene
3	gene	89.96800	89.96816	negative	MGI_C57BL6J_5453823	Gm24046	ENSEMBL:ENSMUSG00000065045	MGI:5453823	snRNA gene	predicted gene, 24046
3	gene	89.99545	89.99878	negative	MGI_C57BL6J_1346319	Hax1	NCBI_Gene:23897,ENSEMBL:ENSMUSG00000027944	MGI:1346319	protein coding gene	HCLS1 associated X-1
3	gene	89.99876	90.02144	positive	MGI_C57BL6J_5011895	Gm19710	NCBI_Gene:100503469,ENSEMBL:ENSMUSG00000105552	MGI:5011895	lncRNA gene	predicted gene, 19710
3	gene	89.99959	90.05263	negative	MGI_C57BL6J_1921633	Ubap2l	NCBI_Gene:74383,ENSEMBL:ENSMUSG00000042520	MGI:1921633	protein coding gene	ubiquitin-associated protein 2-like
3	gene	90.01059	90.01073	negative	MGI_C57BL6J_5454385	Gm24608	ENSEMBL:ENSMUSG00000077569	MGI:5454385	snoRNA gene	predicted gene, 24608
3	gene	90.01115	90.01121	negative	MGI_C57BL6J_5531378	Mir7669	miRBase:MI0025009,NCBI_Gene:102465771,ENSEMBL:ENSMUSG00000098397	MGI:5531378	miRNA gene	microRNA 7669
3	gene	90.05164	90.06835	positive	MGI_C57BL6J_1914027	4933434E20Rik	NCBI_Gene:99650,ENSEMBL:ENSMUSG00000027942	MGI:1914027	protein coding gene	RIKEN cDNA 4933434E20 gene
3	gene	90.05726	90.05838	positive	MGI_C57BL6J_4414960	Gm16540	ENSEMBL:ENSMUSG00000090005	MGI:4414960	lncRNA gene	predicted gene 16540
3	gene	90.06280	90.06835	positive	MGI_C57BL6J_1920795	1700094D03Rik	NCBI_Gene:73545	MGI:1920795	protein coding gene	RIKEN cDNA 1700094D03 gene
3	gene	90.07002	90.07010	positive	MGI_C57BL6J_3718457	Mir190b	miRBase:MI0005478,NCBI_Gene:100124481,ENSEMBL:ENSMUSG00000077996	MGI:3718457	miRNA gene	microRNA 190b
3	gene	90.07265	90.10090	positive	MGI_C57BL6J_1890149	Tpm3	NCBI_Gene:59069,ENSEMBL:ENSMUSG00000027940	MGI:1890149	protein coding gene	tropomyosin 3, gamma
3	gene	90.10157	90.21215	positive	MGI_C57BL6J_1924845	Nup210l	NCBI_Gene:77595,ENSEMBL:ENSMUSG00000027939	MGI:1924845	protein coding gene	nucleoporin 210-like
3	gene	90.12465	90.12712	positive	MGI_C57BL6J_5594024	Gm34865	NCBI_Gene:102638261	MGI:5594024	lncRNA gene	predicted gene, 34865
3	gene	90.12654	90.12667	positive	MGI_C57BL6J_5453500	Gm23723	ENSEMBL:ENSMUSG00000064930	MGI:5453500	snoRNA gene	predicted gene, 23723
3	pseudogene	90.12677	90.12706	positive	MGI_C57BL6J_5663849	Gm43712	ENSEMBL:ENSMUSG00000104649	MGI:5663849	pseudogene	predicted gene 43712
3	gene	90.19868	90.19879	positive	MGI_C57BL6J_5453962	Gm24185	ENSEMBL:ENSMUSG00000084527	MGI:5453962	snRNA gene	predicted gene, 24185
3	gene	90.21252	90.21365	negative	MGI_C57BL6J_1888676	Rps27	NCBI_Gene:57294,ENSEMBL:ENSMUSG00000090733	MGI:1888676	protein coding gene	ribosomal protein S27
3	gene	90.21370	90.22639	positive	MGI_C57BL6J_1927232	Rab13	NCBI_Gene:68328,ENSEMBL:ENSMUSG00000027935	MGI:1927232	protein coding gene	RAB13, member RAS oncogene family
3	gene	90.23160	90.23584	positive	MGI_C57BL6J_1346082	Jtb	NCBI_Gene:23922,ENSEMBL:ENSMUSG00000027937	MGI:1346082	protein coding gene	jumping translocation breakpoint
3	gene	90.23750	90.24445	negative	MGI_C57BL6J_1916603	Creb3l4	NCBI_Gene:78284,ENSEMBL:ENSMUSG00000027938	MGI:1916603	protein coding gene	cAMP responsive element binding protein 3-like 4
3	gene	90.24817	90.25361	positive	MGI_C57BL6J_1353474	Slc39a1	NCBI_Gene:30791,ENSEMBL:ENSMUSG00000052310	MGI:1353474	protein coding gene	solute carrier family 39 (zinc transporter), member 1
3	gene	90.25386	90.26413	positive	MGI_C57BL6J_1921593	Crtc2	NCBI_Gene:74343,ENSEMBL:ENSMUSG00000027936	MGI:1921593	protein coding gene	CREB regulated transcription coactivator 2
3	gene	90.26492	90.28067	positive	MGI_C57BL6J_2446201	Dennd4b	NCBI_Gene:229541,ENSEMBL:ENSMUSG00000042404	MGI:2446201	protein coding gene	DENN/MADD domain containing 4B
3	gene	90.27015	90.27021	positive	MGI_C57BL6J_5530752	Mir7012	miRBase:MI0022861,NCBI_Gene:102465612,ENSEMBL:ENSMUSG00000099199	MGI:5530752	miRNA gene	microRNA 7012
3	gene	90.28999	90.29073	positive	MGI_C57BL6J_1918721	8430422J01Rik	NA	NA	unclassified gene	RIKEN cDNA 8430422J01 gene
3	gene	90.29230	90.29398	negative	MGI_C57BL6J_1923075	4930537H20Rik	ENSEMBL:ENSMUSG00000105350	MGI:1923075	lncRNA gene	RIKEN cDNA 4930537H20 gene
3	gene	90.29318	90.36341	positive	MGI_C57BL6J_2443225	Gatad2b	NCBI_Gene:229542,ENSEMBL:ENSMUSG00000042390	MGI:2443225	protein coding gene	GATA zinc finger domain containing 2B
3	gene	90.31152	90.31701	positive	MGI_C57BL6J_5791313	Gm45477	ENSEMBL:ENSMUSG00000108394	MGI:5791313	unclassified gene	predicted gene 45477
3	gene	90.33540	90.33795	positive	MGI_C57BL6J_5791190	Gm45354	ENSEMBL:ENSMUSG00000108689	MGI:5791190	unclassified gene	predicted gene 45354
3	gene	90.38523	90.39005	negative	MGI_C57BL6J_1347358	Slc27a3	NCBI_Gene:26568,ENSEMBL:ENSMUSG00000027932	MGI:1347358	protein coding gene	solute carrier family 27 (fatty acid transporter), member 3
3	gene	90.39138	90.43364	negative	MGI_C57BL6J_2140050	Ints3	NCBI_Gene:229543,ENSEMBL:ENSMUSG00000027933	MGI:2140050	protein coding gene	integrator complex subunit 3
3	gene	90.45059	90.46593	negative	MGI_C57BL6J_97371	Npr1	NCBI_Gene:18160,ENSEMBL:ENSMUSG00000027931	MGI:97371	protein coding gene	natriuretic peptide receptor 1
3	gene	90.45158	90.45709	positive	MGI_C57BL6J_3801855	Gm16048	ENSEMBL:ENSMUSG00000087411	MGI:3801855	lncRNA gene	predicted gene 16048
3	pseudogene	90.46890	90.47096	negative	MGI_C57BL6J_5663732	Gm43595	ENSEMBL:ENSMUSG00000105746	MGI:5663732	pseudogene	predicted gene 43595
3	gene	90.47586	90.47593	negative	MGI_C57BL6J_4413988	n-TMcat11	NCBI_Gene:102467358	MGI:4413988	tRNA gene	nuclear encoded tRNA methionine 11 (anticodon CAT)
3	gene	90.47613	90.48838	positive	MGI_C57BL6J_1915031	Ilf2	NCBI_Gene:67781,ENSEMBL:ENSMUSG00000001016	MGI:1915031	protein coding gene	interleukin enhancer binding factor 2
3	gene	90.48803	90.49103	negative	MGI_C57BL6J_1333745	Snapin	NCBI_Gene:20615,ENSEMBL:ENSMUSG00000001018	MGI:1333745	protein coding gene	SNAP-associated protein
3	gene	90.49854	90.50954	negative	MGI_C57BL6J_1913761	Chtop	NCBI_Gene:66511,ENSEMBL:ENSMUSG00000001017	MGI:1913761	protein coding gene	chromatin target of PRMT1
3	gene	90.51103	90.51439	negative	MGI_C57BL6J_1338917	S100a1	NCBI_Gene:20193,ENSEMBL:ENSMUSG00000044080	MGI:1338917	protein coding gene	S100 calcium binding protein A1
3	gene	90.51444	90.52458	positive	MGI_C57BL6J_109581	S100a13	NCBI_Gene:20196,ENSEMBL:ENSMUSG00000042312	MGI:109581	protein coding gene	S100 calcium binding protein A13
3	gene	90.52685	90.52884	positive	MGI_C57BL6J_1913416	S100a14	NCBI_Gene:66166,ENSEMBL:ENSMUSG00000042306	MGI:1913416	protein coding gene	S100 calcium binding protein A14
3	gene	90.53725	90.54315	positive	MGI_C57BL6J_1915110	S100a16	NCBI_Gene:67860,ENSEMBL:ENSMUSG00000074457	MGI:1915110	protein coding gene	S100 calcium binding protein A16
3	gene	90.54862	90.54872	positive	MGI_C57BL6J_5454370	Gm24593	ENSEMBL:ENSMUSG00000084456	MGI:5454370	snRNA gene	predicted gene, 24593
3	gene	90.56036	90.60271	positive	MGI_C57BL6J_1338849	S100a3	NCBI_Gene:20197,ENSEMBL:ENSMUSG00000001021	MGI:1338849	protein coding gene	S100 calcium binding protein A3
3	gene	90.56036	90.59153	positive	MGI_C57BL6J_3510999	S100a2	NCBI_Gene:628324,ENSEMBL:ENSMUSG00000094018	MGI:3510999	protein coding gene	S100 calcium binding protein A2
3	gene	90.56056	90.56070	negative	MGI_C57BL6J_5453241	Gm23464	ENSEMBL:ENSMUSG00000065079	MGI:5453241	snRNA gene	predicted gene, 23464
3	gene	90.60190	90.60589	positive	MGI_C57BL6J_5662811	Gm42674	ENSEMBL:ENSMUSG00000105518	MGI:5662811	protein coding gene	predicted gene 42674
3	gene	90.60377	90.60604	positive	MGI_C57BL6J_1330282	S100a4	NCBI_Gene:20198,ENSEMBL:ENSMUSG00000001020	MGI:1330282	protein coding gene	S100 calcium binding protein A4
3	gene	90.60648	90.61178	positive	MGI_C57BL6J_1338915	S100a5	NCBI_Gene:20199,ENSEMBL:ENSMUSG00000001023	MGI:1338915	protein coding gene	S100 calcium binding protein A5
3	gene	90.61288	90.62418	positive	MGI_C57BL6J_1339467	S100a6	NCBI_Gene:20200,ENSEMBL:ENSMUSG00000001025	MGI:1339467	protein coding gene	S100 calcium binding protein A6 (calcyclin)
3	pseudogene	90.65165	90.65187	negative	MGI_C57BL6J_5011924	Gm19739	NCBI_Gene:102638335,ENSEMBL:ENSMUSG00000105644	MGI:5011924	pseudogene	predicted gene, 19739
3	gene	90.65183	90.65867	positive	MGI_C57BL6J_2687194	S100a7a	NCBI_Gene:381493,ENSEMBL:ENSMUSG00000063767	MGI:2687194	protein coding gene	S100 calcium binding protein A7A

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	pseudogene	90.84637	90.84825	negative	MGI_C57BL6J_5663372	Gm43235	ENSEMBL:ENSMUSG00000106174	MGI:5663372	pseudogene	predicted gene 43235
3	pseudogene	91.00976	91.01718	negative	MGI_C57BL6J_3643784	Gm9023	NCBI_Gene:668179,ENSEMBL:ENSMUSG00000106257	MGI:3643784	pseudogene	predicted gene 9023
3	pseudogene	91.03957	91.03987	positive	MGI_C57BL6J_3779688	Gm7166	ENSEMBL:ENSMUSG00000105919	MGI:3779688	pseudogene	predicted gene 7166
3	pseudogene	91.07166	91.07519	positive	MGI_C57BL6J_1922392	4930529C04Rik	NCBI_Gene:619677,ENSEMBL:ENSMUSG00000086377	MGI:1922392	pseudogene	RIKEN cDNA 4930529C04 gene
3	gene	91.08814	91.10743	negative	MGI_C57BL6J_2684973	S100a7l2	NCBI_Gene:229550,ENSEMBL:ENSMUSG00000091175	MGI:2684973	protein coding gene	S100 calcium binding protein A7 like 2
3	gene	91.62856	91.63070	negative	MGI_C57BL6J_5595482	Gm36323	NCBI_Gene:102640196	MGI:5595482	protein coding gene	predicted gene, 36323
3	gene	91.73835	91.74049	negative	MGI_C57BL6J_5594344	Gm35185	NCBI_Gene:102638680	MGI:5594344	protein coding gene	predicted gene, 35185
3	pseudogene	91.91438	91.91653	positive	MGI_C57BL6J_5826474	Gm46837	NCBI_Gene:108168919	MGI:5826474	pseudogene	predicted gene, 46837
3	pseudogene	91.99611	91.99725	positive	MGI_C57BL6J_5009818	Gm17742	NCBI_Gene:383887	MGI:5009818	pseudogene	predicted gene, 17742
3	gene	92.01076	92.01086	negative	MGI_C57BL6J_5453474	Gm23697	ENSEMBL:ENSMUSG00000077085	MGI:5453474	miRNA gene	predicted gene, 23697
3	gene	92.01248	92.03267	positive	MGI_C57BL6J_2685266	Pglyrp3	NCBI_Gene:242100,ENSEMBL:ENSMUSG00000042244	MGI:2685266	protein coding gene	peptidoglycan recognition protein 3
3	pseudogene	92.02449	92.02503	positive	MGI_C57BL6J_103164	Mif-ps3	NCBI_Gene:619750,ENSEMBL:ENSMUSG00000082826	MGI:103164	pseudogene	macrophage migration inhibitory factor, pseudogene 3
3	gene	92.06140	92.06151	negative	MGI_C57BL6J_5454922	Gm25145	ENSEMBL:ENSMUSG00000096133	MGI:5454922	miRNA gene	predicted gene, 25145
3	gene	92.08027	92.08314	negative	MGI_C57BL6J_96816	Lor	NCBI_Gene:16939,ENSEMBL:ENSMUSG00000043165	MGI:96816	protein coding gene	loricrin
3	gene	92.09735	92.09963	positive	MGI_C57BL6J_5663873	Gm43736	ENSEMBL:ENSMUSG00000104981	MGI:5663873	lncRNA gene	predicted gene 43736
3	gene	92.10258	92.14274	negative	MGI_C57BL6J_1922313	4930511M18Rik	ENSEMBL:ENSMUSG00000104791	MGI:1922313	lncRNA gene	RIKEN cDNA 4930511M18 gene
3	gene	92.11319	92.11932	positive	MGI_C57BL6J_5663872	Gm43735	ENSEMBL:ENSMUSG00000106143	MGI:5663872	lncRNA gene	predicted gene 43735
3	gene	92.12220	92.12395	negative	MGI_C57BL6J_1925680	Prr9	NCBI_Gene:109314,ENSEMBL:ENSMUSG00000056270	MGI:1925680	protein coding gene	proline rich 9
3	gene	92.13499	92.14275	negative	MGI_C57BL6J_1916582	Lelp1	NCBI_Gene:69332,ENSEMBL:ENSMUSG00000027927	MGI:1916582	protein coding gene	late cornified envelope-like proline-rich 1
3	gene	92.17019	92.18323	positive	MGI_C57BL6J_5594598	Gm35439	NCBI_Gene:102639022,ENSEMBL:ENSMUSG00000105476	MGI:5594598	lncRNA gene	predicted gene, 35439
3	gene	92.21580	92.22249	positive	MGI_C57BL6J_1330350	Sprr2a1	NCBI_Gene:20755,ENSEMBL:ENSMUSG00000078664	MGI:1330350	protein coding gene	small proline-rich protein 2A1
3	gene	92.21592	92.25730	positive	MGI_C57BL6J_3845026	Sprr2a2	NCBI_Gene:100303744,ENSEMBL:ENSMUSG00000068893	MGI:3845026	protein coding gene	small proline-rich protein 2A2
3	pseudogene	92.22741	92.22870	negative	MGI_C57BL6J_3645657	Gm5850	NCBI_Gene:545543,ENSEMBL:ENSMUSG00000103286	MGI:3645657	pseudogene	predicted gene 5850
3	gene	92.24293	92.24624	negative	MGI_C57BL6J_5610315	Gm37087	ENSEMBL:ENSMUSG00000103187	MGI:5610315	unclassified gene	predicted gene, 37087
3	pseudogene	92.26222	92.26350	negative	MGI_C57BL6J_3645652	Gm5851	NCBI_Gene:545545,ENSEMBL:ENSMUSG00000104028	MGI:3645652	pseudogene	predicted gene 5851
3	gene	92.27773	92.28103	negative	MGI_C57BL6J_5610980	Gm37752	ENSEMBL:ENSMUSG00000103385	MGI:5610980	unclassified gene	predicted gene, 37752
3	gene	92.28530	92.29140	positive	MGI_C57BL6J_3845028	Sprr2a3	NCBI_Gene:100042514,ENSEMBL:ENSMUSG00000074445	MGI:3845028	protein coding gene	small proline-rich protein 2A3
3	gene	92.31662	92.31808	positive	MGI_C57BL6J_1330352	Sprr2b	NCBI_Gene:20756,ENSEMBL:ENSMUSG00000050092	MGI:1330352	protein coding gene	small proline-rich protein 2B
3	pseudogene	92.32091	92.32105	positive	MGI_C57BL6J_5610656	Gm37428	ENSEMBL:ENSMUSG00000103518	MGI:5610656	pseudogene	predicted gene, 37428
3	pseudogene	92.32660	92.32690	positive	MGI_C57BL6J_1330351	Sprr2c-ps	NCBI_Gene:20757,ENSEMBL:ENSMUSG00000103221	MGI:1330351	pseudogene	small proline-rich protein 2C, pseudogene
3	gene	92.33914	92.34087	positive	MGI_C57BL6J_1330347	Sprr2d	NCBI_Gene:20758,ENSEMBL:ENSMUSG00000042212	MGI:1330347	protein coding gene	small proline-rich protein 2D
3	gene	92.35214	92.35345	positive	MGI_C57BL6J_1330346	Sprr2e	NCBI_Gene:20759,ENSEMBL:ENSMUSG00000055030	MGI:1330346	protein coding gene	small proline-rich protein 2E
3	gene	92.36519	92.36644	positive	MGI_C57BL6J_1330349	Sprr2f	NCBI_Gene:20760,ENSEMBL:ENSMUSG00000050635	MGI:1330349	protein coding gene	small proline-rich protein 2F
3	pseudogene	92.37391	92.37523	positive	MGI_C57BL6J_1330348	Sprr2g	NCBI_Gene:20761,ENSEMBL:ENSMUSG00000046203	MGI:1330348	polymorphic pseudogene	small proline-rich protein 2G
3	gene	92.38568	92.38732	positive	MGI_C57BL6J_1330343	Sprr2h	NCBI_Gene:20762,ENSEMBL:ENSMUSG00000046259	MGI:1330343	protein coding gene	small proline-rich protein 2H
3	gene	92.40799	92.40927	positive	MGI_C57BL6J_1330309	Sprr2i	NCBI_Gene:20763,ENSEMBL:ENSMUSG00000042157	MGI:1330309	protein coding gene	small proline-rich protein 2I
3	pseudogene	92.41808	92.41940	positive	MGI_C57BL6J_1330345	Sprr2j-ps	NCBI_Gene:20764,ENSEMBL:ENSMUSG00000027925	MGI:1330345	pseudogene	small proline-rich protein 2J, pseudogene
3	gene	92.42803	92.42942	negative	MGI_C57BL6J_3642386	Gm9774	NCBI_Gene:100043022,ENSEMBL:ENSMUSG00000042165	MGI:3642386	protein coding gene	predicted pseudogene 9774
3	gene	92.43258	92.43393	positive	MGI_C57BL6J_1330344	Sprr2k	NCBI_Gene:20765,ENSEMBL:ENSMUSG00000054215	MGI:1330344	protein coding gene	small proline-rich protein 2K
3	gene	92.43681	92.43882	negative	MGI_C57BL6J_106659	Sprr1b	NCBI_Gene:20754,ENSEMBL:ENSMUSG00000048455	MGI:106659	protein coding gene	small proline-rich protein 1B
3	gene	92.45650	92.45872	negative	MGI_C57BL6J_1330237	Sprr3	NCBI_Gene:20766,ENSEMBL:ENSMUSG00000045539	MGI:1330237	protein coding gene	small proline-rich protein 3
3	pseudogene	92.47324	92.47354	negative	MGI_C57BL6J_5610605	Gm37377	ENSEMBL:ENSMUSG00000102345	MGI:5610605	pseudogene	predicted gene, 37377
3	gene	92.48395	92.48589	negative	MGI_C57BL6J_106660	Sprr1a	NCBI_Gene:20753,ENSEMBL:ENSMUSG00000050359	MGI:106660	protein coding gene	small proline-rich protein 1A
3	gene	92.50026	92.50049	negative	MGI_C57BL6J_2654508	Sprr4	NCBI_Gene:229562,ENSEMBL:ENSMUSG00000045566	MGI:2654508	protein coding gene	small proline-rich protein 4
3	gene	92.53251	92.53451	negative	MGI_C57BL6J_1924218	2310046K23Rik	ENSEMBL:ENSMUSG00000102308	MGI:1924218	protein coding gene	RIKEN cDNA 2310046K23 gene
3	gene	92.57090	92.57379	negative	MGI_C57BL6J_96626	Ivl	NCBI_Gene:16447,ENSEMBL:ENSMUSG00000049128	MGI:96626	protein coding gene	involucrin
3	gene	92.57387	92.62033	positive	MGI_C57BL6J_5594798	Gm35639	NCBI_Gene:102639293	MGI:5594798	lncRNA gene	predicted gene, 35639
3	gene	92.58387	92.58902	negative	MGI_C57BL6J_96945	Smcp	NCBI_Gene:17235,ENSEMBL:ENSMUSG00000074435	MGI:96945	protein coding gene	sperm mitochondria-associated cysteine-rich protein
3	gene	92.60472	92.60749	negative	MGI_C57BL6J_3588251	2210017I01Rik	ENSEMBL:ENSMUSG00000103523	MGI:3588251	protein coding gene	RIKEN cDNA 2210017I01 gene
3	gene	92.60476	92.62166	negative	MGI_C57BL6J_1925632	Lce6a	NCBI_Gene:78382,ENSEMBL:ENSMUSG00000086848	MGI:1925632	protein coding gene	late cornified envelope 6A
3	gene	92.62034	92.64644	positive	MGI_C57BL6J_5826449	Gm46812	NCBI_Gene:108168880	MGI:5826449	lncRNA gene	predicted gene, 46812
3	gene	92.63906	92.64007	negative	MGI_C57BL6J_5594858	Gm35699	NCBI_Gene:102639369	MGI:5594858	lncRNA gene	predicted gene, 35699
3	gene	92.64653	92.64831	negative	MGI_C57BL6J_1914377	Lce1a1	NCBI_Gene:67127,ENSEMBL:ENSMUSG00000057609	MGI:1914377	protein coding gene	late cornified envelope 1A1
3	gene	92.65565	92.65693	negative	MGI_C57BL6J_1915970	Lce1b	NCBI_Gene:68720,ENSEMBL:ENSMUSG00000027923	MGI:1915970	protein coding gene	late cornified envelope 1B
3	pseudogene	92.66419	92.66490	positive	MGI_C57BL6J_3648077	Rpl13-ps4	NCBI_Gene:620325,ENSEMBL:ENSMUSG00000104215	MGI:3648077	pseudogene	ribosomal protein L13, pseudogene 4
3	gene	92.66861	92.67032	negative	MGI_C57BL6J_1920972	Lce1a2	NCBI_Gene:73722,ENSEMBL:ENSMUSG00000068890	MGI:1920972	protein coding gene	late cornified envelope 1A2
3	gene	92.67925	92.68092	positive	MGI_C57BL6J_1920969	Lce1c	NCBI_Gene:73719,ENSEMBL:ENSMUSG00000042092	MGI:1920969	protein coding gene	late cornified envelope 1C
3	gene	92.68550	92.68721	negative	MGI_C57BL6J_1916861	Lce1d	NCBI_Gene:69611,ENSEMBL:ENSMUSG00000103243	MGI:1916861	protein coding gene	late cornified envelope 1D
3	pseudogene	92.68942	92.69016	positive	MGI_C57BL6J_3782379	Gm4202	NCBI_Gene:100418460,ENSEMBL:ENSMUSG00000091421	MGI:3782379	pseudogene	predicted gene 4202
3	gene	92.70740	92.70907	negative	MGI_C57BL6J_1915944	Lce1e	NCBI_Gene:68694,ENSEMBL:ENSMUSG00000068889	MGI:1915944	protein coding gene	late cornified envelope 1E
3	gene	92.71868	92.72035	negative	MGI_C57BL6J_1915078	Lce1f	NCBI_Gene:67828,ENSEMBL:ENSMUSG00000042124	MGI:1915078	protein coding gene	late cornified envelope 1F
3	gene	92.73765	92.73910	negative	MGI_C57BL6J_5611347	Gm38119	ENSEMBL:ENSMUSG00000103084	MGI:5611347	protein coding gene	predicted gene, 38119
3	gene	92.75015	92.75234	negative	MGI_C57BL6J_1913445	Lce1g	NCBI_Gene:66195,ENSEMBL:ENSMUSG00000027919	MGI:1913445	protein coding gene	late cornified envelope 1G
3	gene	92.76322	92.76507	negative	MGI_C57BL6J_1914968	Lce1h	NCBI_Gene:67718,ENSEMBL:ENSMUSG00000049593	MGI:1914968	protein coding gene	late cornified envelope 1H
3	gene	92.77721	92.77890	negative	MGI_C57BL6J_1923835	Lce1i	NCBI_Gene:76585,ENSEMBL:ENSMUSG00000068888	MGI:1923835	protein coding gene	late cornified envelope 1I
3	gene	92.78884	92.79051	negative	MGI_C57BL6J_3702532	Lce1j	NCBI_Gene:545547,ENSEMBL:ENSMUSG00000068887	MGI:3702532	protein coding gene	late cornified envelope 1J
3	gene	92.80629	92.80789	negative	MGI_C57BL6J_3702534	Lce1k	NCBI_Gene:631101,ENSEMBL:ENSMUSG00000095870	MGI:3702534	protein coding gene	late cornified envelope 1K
3	gene	92.82307	92.82725	negative	MGI_C57BL6J_1920981	Kprp	NCBI_Gene:433619,ENSEMBL:ENSMUSG00000059832	MGI:1920981	protein coding gene	keratinocyte expressed, proline-rich
3	gene	92.84330	92.84368	negative	MGI_C57BL6J_5611429	Gm38201	ENSEMBL:ENSMUSG00000102469	MGI:5611429	lncRNA gene	predicted gene, 38201
3	gene	92.84995	92.85129	negative	MGI_C57BL6J_1920980	Lce1l	NCBI_Gene:73730,ENSEMBL:ENSMUSG00000046676	MGI:1920980	protein coding gene	late cornified envelope 1L
3	gene	92.86836	92.87022	negative	MGI_C57BL6J_1913783	2310050C09Rik	NCBI_Gene:66533,ENSEMBL:ENSMUSG00000090314	MGI:1913783	protein coding gene	RIKEN cDNA 2310050C09 gene
3	gene	92.92529	92.92623	negative	MGI_C57BL6J_3645650	Lce3a	NCBI_Gene:545548,ENSEMBL:ENSMUSG00000054325	MGI:3645650	protein coding gene	late cornified envelope 3A
3	gene	92.93298	92.93410	positive	MGI_C57BL6J_1913594	Lce3b	NCBI_Gene:66344,ENSEMBL:ENSMUSG00000042031	MGI:1913594	protein coding gene	late cornified envelope 3B
3	pseudogene	92.93768	92.93807	positive	MGI_C57BL6J_5611306	Gm38078	ENSEMBL:ENSMUSG00000104364	MGI:5611306	pseudogene	predicted gene, 38078
3	gene	92.94449	92.94573	positive	MGI_C57BL6J_2135932	Lce3c	NCBI_Gene:94060,ENSEMBL:ENSMUSG00000045475	MGI:2135932	protein coding gene	late cornified envelope 3C
3	gene	92.94916	92.94926	negative	MGI_C57BL6J_5454258	Gm24481	ENSEMBL:ENSMUSG00000087835	MGI:5454258	snRNA gene	predicted gene, 24481
3	gene	92.95739	92.95857	positive	MGI_C57BL6J_3642919	Lce3d	NCBI_Gene:630994,ENSEMBL:ENSMUSG00000043472	MGI:3642919	protein coding gene	late cornified envelope 3D
3	gene	92.96201	92.96212	negative	MGI_C57BL6J_5452354	Gm22577	ENSEMBL:ENSMUSG00000065665	MGI:5452354	snRNA gene	predicted gene, 22577
3	gene	92.96706	92.96828	positive	MGI_C57BL6J_1916764	Lce3e	NCBI_Gene:69514,ENSEMBL:ENSMUSG00000074433	MGI:1916764	protein coding gene	late cornified envelope 3E
3	gene	92.99223	92.99343	positive	MGI_C57BL6J_1916770	Lce3f	NCBI_Gene:69520,ENSEMBL:ENSMUSG00000068885	MGI:1916770	protein coding gene	late cornified envelope 3F
3	gene	93.01421	93.01569	negative	MGI_C57BL6J_1921425	Crct1	NCBI_Gene:74175,ENSEMBL:ENSMUSG00000027913	MGI:1921425	protein coding gene	cysteine-rich C-terminal 1
3	gene	93.01781	93.01906	negative	MGI_C57BL6J_1913453	Lce1m	NCBI_Gene:66203,ENSEMBL:ENSMUSG00000027912	MGI:1913453	protein coding gene	late cornified envelope 1M
3	pseudogene	93.06474	93.06496	negative	MGI_C57BL6J_5611268	Gm38040	ENSEMBL:ENSMUSG00000104298	MGI:5611268	pseudogene	predicted gene, 38040
3	gene	93.06882	93.07551	positive	MGI_C57BL6J_3645677	Tdpoz8	NCBI_Gene:229571,ENSEMBL:ENSMUSG00000096879	MGI:3645677	protein coding gene	TD and POZ domain containing 8
3	gene	93.09758	93.12825	negative	MGI_C57BL6J_5594944	Gm35785	NCBI_Gene:102639481	MGI:5594944	lncRNA gene	predicted gene, 35785
3	pseudogene	93.10044	93.10060	negative	MGI_C57BL6J_5610589	Gm37361	NCBI_Gene:108168920,ENSEMBL:ENSMUSG00000103628	MGI:5610589	pseudogene	predicted gene, 37361
3	gene	93.14479	93.14982	positive	MGI_C57BL6J_2685861	Crnn	NCBI_Gene:381457,ENSEMBL:ENSMUSG00000078657	MGI:2685861	protein coding gene	cornulin
3	pseudogene	93.15218	93.15287	positive	MGI_C57BL6J_5610729	Gm37501	ENSEMBL:ENSMUSG00000103902	MGI:5610729	pseudogene	predicted gene, 37501
3	gene	93.19727	93.22139	positive	MGI_C57BL6J_3645678	Flg2	NCBI_Gene:229574,ENSEMBL:ENSMUSG00000049133	MGI:3645678	protein coding gene	filaggrin family member 2
3	pseudogene	93.23492	93.23647	positive	MGI_C57BL6J_5010617	Gm18432	NCBI_Gene:100417160,ENSEMBL:ENSMUSG00000102609	MGI:5010617	pseudogene	predicted gene, 18432
3	gene	93.27352	93.29369	positive	MGI_C57BL6J_95553	Flg	NCBI_Gene:14246,ENSEMBL:ENSMUSG00000102439	MGI:95553	protein coding gene	filaggrin
3	pseudogene	93.27807	93.27915	positive	MGI_C57BL6J_3648599	Rplp0-ps1	NCBI_Gene:668300,ENSEMBL:ENSMUSG00000081640	MGI:3648599	pseudogene	ribosomal protein, large, P0, pseudogene 1
3	pseudogene	93.30501	93.30547	positive	MGI_C57BL6J_5611150	Gm37922	ENSEMBL:ENSMUSG00000102485	MGI:5611150	pseudogene	predicted gene, 37922
3	gene	93.30647	93.30901	positive	MGI_C57BL6J_5611141	Gm37913	ENSEMBL:ENSMUSG00000103273	MGI:5611141	unclassified gene	predicted gene, 37913
3	gene	93.30647	93.46536	negative	MGI_C57BL6J_5610473	Gm37245	ENSEMBL:ENSMUSG00000102476	MGI:5610473	lncRNA gene	predicted gene, 37245
3	gene	93.31954	93.33357	positive	MGI_C57BL6J_3046938	Hrnr	NCBI_Gene:68723,ENSEMBL:ENSMUSG00000041991	MGI:3046938	protein coding gene	hornerin
3	gene	93.38869	93.38883	positive	MGI_C57BL6J_5690745	Gm44353	ENSEMBL:ENSMUSG00000106242	MGI:5690745	miRNA gene	predicted gene, 44353
3	gene	93.39370	93.39490	positive	MGI_C57BL6J_5611085	Gm37857	ENSEMBL:ENSMUSG00000103765	MGI:5611085	unclassified gene	predicted gene, 37857
3	gene	93.39370	93.39944	positive	MGI_C57BL6J_1099055	Rptn	NCBI_Gene:20129,ENSEMBL:ENSMUSG00000041984	MGI:1099055	protein coding gene	repetin
3	pseudogene	93.42065	93.42143	negative	MGI_C57BL6J_5010481	Gm18296	NCBI_Gene:100416867,ENSEMBL:ENSMUSG00000104171	MGI:5010481	pseudogene	predicted gene, 18296
3	pseudogene	93.43306	93.43396	negative	MGI_C57BL6J_3643701	Gm5278	NCBI_Gene:383891,ENSEMBL:ENSMUSG00000057829	MGI:3643701	pseudogene	predicted pseudogene 5278
3	gene	93.43320	93.43331	negative	MGI_C57BL6J_5452529	Gm22752	ENSEMBL:ENSMUSG00000076037	MGI:5452529	miRNA gene	predicted gene, 22752
3	gene	93.44233	93.44908	positive	MGI_C57BL6J_2177944	Tchh	NCBI_Gene:99681,ENSEMBL:ENSMUSG00000052415	MGI:2177944	protein coding gene	trichohyalin
3	gene	93.46875	93.47198	positive	MGI_C57BL6J_1918575	Tchhl1	NCBI_Gene:71325,ENSEMBL:ENSMUSG00000027908	MGI:1918575	protein coding gene	trichohyalin-like 1
3	pseudogene	93.49981	93.50030	negative	MGI_C57BL6J_5610181	Gm36953	ENSEMBL:ENSMUSG00000104135	MGI:5610181	pseudogene	predicted gene, 36953
3	gene	93.52049	93.52629	positive	MGI_C57BL6J_1338798	S100a11	NCBI_Gene:20195,ENSEMBL:ENSMUSG00000027907	MGI:1338798	protein coding gene	S100 calcium binding protein A11
3	pseudogene	93.53051	93.53079	negative	MGI_C57BL6J_5589109	Gm29950	NCBI_Gene:102631667,ENSEMBL:ENSMUSG00000103031	MGI:5589109	pseudogene	predicted gene, 29950
3	gene	93.55507	93.56464	positive	MGI_C57BL6J_1339468	S100a10	NCBI_Gene:20194,ENSEMBL:ENSMUSG00000041959	MGI:1339468	protein coding gene	S100 calcium binding protein A10 (calpactin)
3	gene	93.59536	93.59750	negative	MGI_C57BL6J_5622978	Gm40093	NCBI_Gene:105244496	MGI:5622978	lncRNA gene	predicted gene, 40093
3	pseudogene	93.60517	93.60571	positive	MGI_C57BL6J_5010516	Gm18331	NCBI_Gene:100416948	MGI:5010516	pseudogene	predicted gene, 18331
3	pseudogene	93.62864	93.62975	negative	MGI_C57BL6J_3645005	Gm5541	NCBI_Gene:433623,ENSEMBL:ENSMUSG00000103406	MGI:3645005	pseudogene	predicted gene 5541

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	pseudogene	93.90814	93.91191	positive	MGI_C57BL6J_3648187	Gm9116	NCBI_Gene:668344,ENSEMBL:ENSMUSG00000102933	MGI:3648187	pseudogene	predicted gene 9116
3	pseudogene	93.91284	93.91325	positive	MGI_C57BL6J_5610413	Gm37185	ENSEMBL:ENSMUSG00000102769	MGI:5610413	pseudogene	predicted gene, 37185
3	gene	93.93663	93.94354	negative	MGI_C57BL6J_3704095	Gm9117	NCBI_Gene:668346,ENSEMBL:ENSMUSG00000095822	MGI:3704095	protein coding gene	predicted pseudogene 9117
3	pseudogene	93.95807	93.95827	positive	MGI_C57BL6J_5610332	Gm37104	ENSEMBL:ENSMUSG00000102445	MGI:5610332	pseudogene	predicted gene, 37104
3	gene	93.96029	93.96131	negative	MGI_C57BL6J_3027905	Tdpoz5	NCBI_Gene:399676,ENSEMBL:ENSMUSG00000094163	MGI:3027905	protein coding gene	TD and POZ domain containing 5
3	pseudogene	93.96914	93.96933	positive	MGI_C57BL6J_5611035	Gm37807	ENSEMBL:ENSMUSG00000103841	MGI:5611035	pseudogene	predicted gene, 37807
3	pseudogene	93.97771	93.97811	negative	MGI_C57BL6J_5610709	Gm37481	ENSEMBL:ENSMUSG00000102804	MGI:5610709	pseudogene	predicted gene, 37481
3	pseudogene	93.97904	93.98283	negative	MGI_C57BL6J_3644976	Gm9121	NCBI_Gene:668353,ENSEMBL:ENSMUSG00000104460	MGI:3644976	pseudogene	predicted pseudogene 9121
3	pseudogene	94.00828	94.01139	positive	MGI_C57BL6J_3644979	Gm9124	NCBI_Gene:668356,ENSEMBL:ENSMUSG00000104059	MGI:3644979	pseudogene	predicted pseudogene 9124
3	pseudogene	94.01277	94.01296	negative	MGI_C57BL6J_5610313	Gm37085	ENSEMBL:ENSMUSG00000102857	MGI:5610313	pseudogene	predicted gene, 37085
3	gene	94.04798	94.05488	negative	MGI_C57BL6J_3702970	Tdpoz9	NCBI_Gene:668359,ENSEMBL:ENSMUSG00000094328	MGI:3702970	protein coding gene	TD and POZ domain containing 9
3	pseudogene	94.06940	94.06960	positive	MGI_C57BL6J_5610309	Gm37081	ENSEMBL:ENSMUSG00000102655	MGI:5610309	pseudogene	predicted gene, 37081
3	gene	94.07162	94.07264	negative	MGI_C57BL6J_3710527	Tdpoz7	NCBI_Gene:100042761,ENSEMBL:ENSMUSG00000095251	MGI:3710527	protein coding gene	Td and POZ domain containing 7
3	pseudogene	94.07991	94.08010	positive	MGI_C57BL6J_5611006	Gm37778	ENSEMBL:ENSMUSG00000102696	MGI:5611006	pseudogene	predicted gene, 37778
3	pseudogene	94.08848	94.08888	negative	MGI_C57BL6J_5610383	Gm37155	ENSEMBL:ENSMUSG00000103239	MGI:5610383	pseudogene	predicted gene, 37155
3	pseudogene	94.08982	94.09360	negative	MGI_C57BL6J_3779496	Gm5542	NCBI_Gene:433624,ENSEMBL:ENSMUSG00000102462	MGI:3779496	pseudogene	predicted gene 5542
3	pseudogene	94.11833	94.12144	positive	MGI_C57BL6J_3648392	Gm9131	NCBI_Gene:668367,ENSEMBL:ENSMUSG00000104338	MGI:3648392	pseudogene	predicted gene 9131
3	pseudogene	94.12282	94.12301	negative	MGI_C57BL6J_5611110	Gm37882	ENSEMBL:ENSMUSG00000102949	MGI:5611110	pseudogene	predicted gene, 37882
3	pseudogene	94.15763	94.15872	negative	MGI_C57BL6J_3645007	Gm5543	NCBI_Gene:433625,ENSEMBL:ENSMUSG00000102311	MGI:3645007	pseudogene	predicted gene 5543
3	pseudogene	94.16655	94.16674	positive	MGI_C57BL6J_5610229	Gm37001	ENSEMBL:ENSMUSG00000102285	MGI:5610229	pseudogene	predicted gene, 37001
3	pseudogene	94.16696	94.16985	negative	MGI_C57BL6J_5434310	Gm20955	NCBI_Gene:100418020	MGI:5434310	pseudogene	predicted gene, 20955
3	pseudogene	94.17308	94.17348	negative	MGI_C57BL6J_4414980	Gm16560	ENSEMBL:ENSMUSG00000089826	MGI:4414980	pseudogene	predicted gene 16560
3	gene	94.17441	94.17819	negative	MGI_C57BL6J_3702972	Spopfm2	NCBI_Gene:100043188,ENSEMBL:ENSMUSG00000074424	MGI:3702972	protein coding gene	speckle-type BTB/POZ protein family member 2
3	gene	94.19671	94.19983	positive	MGI_C57BL6J_3644284	Spopfm3	NCBI_Gene:383977,ENSEMBL:ENSMUSG00000090268	MGI:3644284	protein coding gene	speckle-type BTB/POZ protein family member 3
3	pseudogene	94.20121	94.20140	negative	MGI_C57BL6J_4415004	Gm16584	ENSEMBL:ENSMUSG00000090111	MGI:4415004	pseudogene	predicted gene 16584
3	pseudogene	94.23670	94.23780	negative	MGI_C57BL6J_3646925	Gm4982	NCBI_Gene:245290,ENSEMBL:ENSMUSG00000089689	MGI:3646925	pseudogene	predicted gene 4982
3	pseudogene	94.24244	94.24347	negative	MGI_C57BL6J_3643267	Gm9141	NCBI_Gene:668385,ENSEMBL:ENSMUSG00000089893	MGI:3643267	pseudogene	predicted gene 9141
3	gene	94.26404	94.26718	positive	MGI_C57BL6J_3643869	Spopfm1	NCBI_Gene:212727,ENSEMBL:ENSMUSG00000089696	MGI:3643869	protein coding gene	speckle-type BTB/POZ protein family member 1
3	pseudogene	94.27523	94.27542	negative	MGI_C57BL6J_4414981	Gm16561	ENSEMBL:ENSMUSG00000089891	MGI:4414981	pseudogene	predicted gene 16561
3	gene	94.27797	94.30999	negative	MGI_C57BL6J_5595169	Gm36010	NCBI_Gene:102639779	MGI:5595169	lncRNA gene	predicted gene, 36010
3	gene	94.31009	94.33254	positive	MGI_C57BL6J_1923028	Them4	NCBI_Gene:75778,ENSEMBL:ENSMUSG00000028145	MGI:1923028	protein coding gene	thioesterase superfamily member 4
3	pseudogene	94.33439	94.33533	negative	MGI_C57BL6J_5663880	Gm43743	ENSEMBL:ENSMUSG00000105506	MGI:5663880	pseudogene	predicted gene 43743
3	gene	94.34210	94.34735	positive	MGI_C57BL6J_1913448	Them5	NCBI_Gene:66198,ENSEMBL:ENSMUSG00000028148	MGI:1913448	protein coding gene	thioesterase superfamily member 5
3	gene	94.35651	94.36084	negative	MGI_C57BL6J_5595229	Gm36070	ENSEMBL:ENSMUSG00000105708	MGI:5595229	lncRNA gene	predicted gene, 36070
3	gene	94.36244	94.36457	positive	MGI_C57BL6J_2685505	C2cd4d	NCBI_Gene:271944,ENSEMBL:ENSMUSG00000091648	MGI:2685505	protein coding gene	C2 calcium-dependent domain containing 4D
3	gene	94.36553	94.37725	negative	MGI_C57BL6J_5621296	Gm38411	NCBI_Gene:329711,ENSEMBL:ENSMUSG00000104669	MGI:5621296	lncRNA gene	predicted gene, 38411
3	gene	94.37272	94.39828	positive	MGI_C57BL6J_104856	Rorc	NCBI_Gene:19885,ENSEMBL:ENSMUSG00000028150	MGI:104856	protein coding gene	RAR-related orphan receptor gamma
3	gene	94.39297	94.40285	negative	MGI_C57BL6J_5663538	Gm43401	ENSEMBL:ENSMUSG00000105391	MGI:5663538	lncRNA gene	predicted gene 43401
3	gene	94.39852	94.40450	positive	MGI_C57BL6J_2444651	Lingo4	NCBI_Gene:320747,ENSEMBL:ENSMUSG00000044505	MGI:2444651	protein coding gene	leucine rich repeat and Ig domain containing 4
3	gene	94.40939	94.41294	negative	MGI_C57BL6J_1923852	1700040D17Rik	NCBI_Gene:76602,ENSEMBL:ENSMUSG00000097515	MGI:1923852	lncRNA gene	RIKEN cDNA 1700040D17 gene
3	gene	94.41314	94.43485	positive	MGI_C57BL6J_1919884	Tdrkh	NCBI_Gene:72634,ENSEMBL:ENSMUSG00000041912	MGI:1919884	protein coding gene	tudor and KH domain containing protein
3	gene	94.41340	94.41829	positive	MGI_C57BL6J_5662600	Gm42463	ENSEMBL:ENSMUSG00000106032	MGI:5662600	lncRNA gene	predicted gene 42463
3	pseudogene	94.42166	94.42243	negative	MGI_C57BL6J_5662601	Gm42464	ENSEMBL:ENSMUSG00000104756	MGI:5662601	pseudogene	predicted gene 42464
3	gene	94.43241	94.44392	negative	MGI_C57BL6J_1858170	Oaz3	NCBI_Gene:53814,ENSEMBL:ENSMUSG00000028141	MGI:1858170	protein coding gene	ornithine decarboxylase antizyme 3
3	gene	94.44315	94.45113	positive	MGI_C57BL6J_2137211	Mrpl9	NCBI_Gene:78523,ENSEMBL:ENSMUSG00000028140	MGI:2137211	protein coding gene	mitochondrial ribosomal protein L9
3	pseudogene	94.44854	94.45407	positive	MGI_C57BL6J_5589182	Gm30023	NCBI_Gene:102631769,ENSEMBL:ENSMUSG00000104695	MGI:5589182	pseudogene	predicted gene, 30023
3	gene	94.46498	94.48034	negative	MGI_C57BL6J_1913603	Riiad1	NCBI_Gene:66353,ENSEMBL:ENSMUSG00000028139	MGI:1913603	protein coding gene	regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1
3	gene	94.47828	94.49220	positive	MGI_C57BL6J_1926034	Celf3	NCBI_Gene:78784,ENSEMBL:ENSMUSG00000028137	MGI:1926034	protein coding gene	CUGBP, Elav-like family member 3
3	gene	94.48334	94.48399	negative	MGI_C57BL6J_5826450	Gm46813	NCBI_Gene:108168881	MGI:5826450	lncRNA gene	predicted gene, 46813
3	gene	94.49754	94.58272	negative	MGI_C57BL6J_1923992	Snx27	NCBI_Gene:76742,ENSEMBL:ENSMUSG00000028136	MGI:1923992	protein coding gene	sorting nexin family member 27
3	gene	94.53381	94.53597	negative	MGI_C57BL6J_5663910	Gm43773	ENSEMBL:ENSMUSG00000106061	MGI:5663910	lncRNA gene	predicted gene 43773
3	gene	94.53661	94.53749	negative	MGI_C57BL6J_5663911	Gm43774	ENSEMBL:ENSMUSG00000104631	MGI:5663911	lncRNA gene	predicted gene 43774
3	gene	94.57578	94.57703	negative	MGI_C57BL6J_5663905	Gm43768	ENSEMBL:ENSMUSG00000105412	MGI:5663905	lncRNA gene	predicted gene 43768
3	pseudogene	94.58947	94.58966	positive	MGI_C57BL6J_3705756	Gm15235	ENSEMBL:ENSMUSG00000105522	MGI:3705756	pseudogene	predicted gene 15235
3	pseudogene	94.60438	94.60485	negative	MGI_C57BL6J_3646595	Rpl31-ps11	NCBI_Gene:668409,ENSEMBL:ENSMUSG00000062896	MGI:3646595	pseudogene	ribosomal protein L31, pseudogene 11
3	gene	94.61275	94.65887	negative	MGI_C57BL6J_109572	Tuft1	NCBI_Gene:22156,ENSEMBL:ENSMUSG00000005968	MGI:109572	protein coding gene	tuftelin 1
3	gene	94.64310	94.64360	positive	MGI_C57BL6J_3779183	Gm10972	ENSEMBL:ENSMUSG00000118474	MGI:3779183	protein coding gene	predicted gene 10972
3	gene	94.65896	94.66012	positive	MGI_C57BL6J_3705137	Gm15234	ENSEMBL:ENSMUSG00000085250	MGI:3705137	lncRNA gene	predicted gene 15234
3	pseudogene	94.66059	94.67070	negative	MGI_C57BL6J_3615512	BC021767	NCBI_Gene:545551,ENSEMBL:ENSMUSG00000085006	MGI:3615512	pseudogene	cDNA sequence BC021767
3	gene	94.67721	94.68467	positive	MGI_C57BL6J_5826451	Gm46814	NCBI_Gene:108168882	MGI:5826451	lncRNA gene	predicted gene, 46814
3	gene	94.69356	94.70441	positive	MGI_C57BL6J_104859	Selenbp2	NCBI_Gene:20342,ENSEMBL:ENSMUSG00000068877	MGI:104859	protein coding gene	selenium binding protein 2
3	pseudogene	94.72002	94.75818	negative	MGI_C57BL6J_3705845	Gm15264	NCBI_Gene:100042801,ENSEMBL:ENSMUSG00000081355	MGI:3705845	pseudogene	predicted gene 15264
3	pseudogene	94.73734	94.73771	positive	MGI_C57BL6J_5663848	Gm43711	ENSEMBL:ENSMUSG00000104881	MGI:5663848	pseudogene	predicted gene 43711
3	gene	94.76007	94.78772	negative	MGI_C57BL6J_1927237	Cgn	NCBI_Gene:70737,ENSEMBL:ENSMUSG00000068876	MGI:1927237	protein coding gene	cingulin
3	gene	94.82085	94.82231	positive	MGI_C57BL6J_5622979	Gm40094	NCBI_Gene:105244497	MGI:5622979	lncRNA gene	predicted gene, 40094
3	gene	94.82311	94.88357	positive	MGI_C57BL6J_2442117	Pogz	NCBI_Gene:229584,ENSEMBL:ENSMUSG00000038902	MGI:2442117	protein coding gene	pogo transposable element with ZNF domain
3	pseudogene	94.83298	94.83380	positive	MGI_C57BL6J_3705753	Gm15263	NCBI_Gene:100417859,ENSEMBL:ENSMUSG00000084058	MGI:3705753	pseudogene	predicted gene 15263
3	gene	94.88409	94.88696	negative	MGI_C57BL6J_1098257	Psmb4	NCBI_Gene:19172,ENSEMBL:ENSMUSG00000005779	MGI:1098257	protein coding gene	proteasome (prosome, macropain) subunit, beta type 4
3	gene	94.91796	94.92300	positive	MGI_C57BL6J_5595396	Gm36237	NCBI_Gene:102640082	MGI:5595396	lncRNA gene	predicted gene, 36237
3	gene	94.92032	94.92042	negative	MGI_C57BL6J_5456056	Gm26279	ENSEMBL:ENSMUSG00000087720	MGI:5456056	snRNA gene	predicted gene, 26279
3	gene	94.93306	94.94476	positive	MGI_C57BL6J_96825	Selenbp1	NCBI_Gene:20341,ENSEMBL:ENSMUSG00000068874	MGI:96825	protein coding gene	selenium binding protein 1
3	gene	94.95307	94.96156	positive	MGI_C57BL6J_1858421	Rfx5	NCBI_Gene:53970,ENSEMBL:ENSMUSG00000005774	MGI:1858421	protein coding gene	regulatory factor X, 5 (influences HLA class II expression)
3	gene	94.95331	94.95369	positive	MGI_C57BL6J_1922445	4930532J02Rik	NA	NA	unclassified gene	RIKEN cDNA 4930532J02 gene
3	gene	94.95903	94.97492	negative	MGI_C57BL6J_1925930	B230398E01Rik	NCBI_Gene:109334,ENSEMBL:ENSMUSG00000087660	MGI:1925930	lncRNA gene	RIKEN cDNA B230398E01 gene
3	gene	94.97473	95.00694	positive	MGI_C57BL6J_1334433	Pi4kb	NCBI_Gene:107650,ENSEMBL:ENSMUSG00000038861	MGI:1334433	protein coding gene	phosphatidylinositol 4-kinase beta
3	gene	94.99441	94.99735	negative	MGI_C57BL6J_2442973	A730011C13Rik	ENSEMBL:ENSMUSG00000084846	MGI:2442973	lncRNA gene	RIKEN cDNA A730011C13 gene
3	gene	94.99467	95.01545	negative	MGI_C57BL6J_1925516	Zfp687	NCBI_Gene:78266,ENSEMBL:ENSMUSG00000019338	MGI:1925516	protein coding gene	zinc finger protein 687
3	gene	94.99880	95.00487	negative	MGI_C57BL6J_3705193	Gm15265	ENSEMBL:ENSMUSG00000086288	MGI:3705193	lncRNA gene	predicted gene 15265
3	gene	95.00417	95.00424	positive	MGI_C57BL6J_5530870	Mir7013	miRBase:MI0022862,NCBI_Gene:102465613,ENSEMBL:ENSMUSG00000099033	MGI:5530870	miRNA gene	microRNA 7013
3	gene	95.01562	95.02198	positive	MGI_C57BL6J_1922187	4930481B07Rik	NCBI_Gene:108168883,ENSEMBL:ENSMUSG00000085956	MGI:1922187	lncRNA gene	RIKEN cDNA 4930481B07 gene
3	gene	95.03269	95.04261	negative	MGI_C57BL6J_1201670	Psmd4	NCBI_Gene:19185,ENSEMBL:ENSMUSG00000005625	MGI:1201670	protein coding gene	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
3	gene	95.04233	95.04293	positive	MGI_C57BL6J_1923891	1700123N01Rik	NA	NA	unclassified gene	RIKEN cDNA 1700123N01 gene
3	gene	95.05853	95.10693	negative	MGI_C57BL6J_107929	Pip5k1a	NCBI_Gene:18720,ENSEMBL:ENSMUSG00000028126	MGI:107929	protein coding gene	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
3	gene	95.09063	95.09071	negative	MGI_C57BL6J_5454697	Gm24920	ENSEMBL:ENSMUSG00000064952	MGI:5454697	snoRNA gene	predicted gene, 24920
3	pseudogene	95.09704	95.09737	negative	MGI_C57BL6J_5622980	Gm40095	NCBI_Gene:105244498	MGI:5622980	pseudogene	predicted gene, 40095
3	gene	95.09950	95.09961	positive	MGI_C57BL6J_5452078	Gm22301	ENSEMBL:ENSMUSG00000064590	MGI:5452078	snRNA gene	predicted gene, 22301
3	gene	95.11102	95.12305	positive	MGI_C57BL6J_1202305	Vps72	NCBI_Gene:21427,ENSEMBL:ENSMUSG00000008958	MGI:1202305	protein coding gene	vacuolar protein sorting 72
3	gene	95.12280	95.12921	positive	MGI_C57BL6J_1355285	Tmod4	NCBI_Gene:50874,ENSEMBL:ENSMUSG00000005628	MGI:1355285	protein coding gene	tropomodulin 4
3	gene	95.12954	95.13405	negative	MGI_C57BL6J_1341284	Scnm1	NCBI_Gene:69269,ENSEMBL:ENSMUSG00000092607	MGI:1341284	protein coding gene	sodium channel modifier 1
3	gene	95.13409	95.13953	positive	MGI_C57BL6J_1919409	Lysmd1	NCBI_Gene:217779,ENSEMBL:ENSMUSG00000053769	MGI:1919409	protein coding gene	LysM, putative peptidoglycan-binding, domain containing 1
3	gene	95.13906	95.13919	negative	MGI_C57BL6J_5531299	Mir8099-1	miRBase:MI0026027,NCBI_Gene:102465890,ENSEMBL:ENSMUSG00000098498	MGI:5531299	miRNA gene	microRNA 8099-1
3	gene	95.13952	95.14245	negative	MGI_C57BL6J_1917019	Tnfaip8l2	NCBI_Gene:69769,ENSEMBL:ENSMUSG00000013707	MGI:1917019	protein coding gene	tumor necrosis factor, alpha-induced protein 8-like 2
3	pseudogene	95.14298	95.14515	positive	MGI_C57BL6J_3648561	Gm9169	NCBI_Gene:668436,ENSEMBL:ENSMUSG00000098198	MGI:3648561	pseudogene	predicted gene 9169
3	gene	95.16042	95.17405	positive	MGI_C57BL6J_1338032	Sema6c	NCBI_Gene:20360,ENSEMBL:ENSMUSG00000038777	MGI:1338032	protein coding gene	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
3	gene	95.18177	95.21808	negative	MGI_C57BL6J_95612	Gabpb2	NCBI_Gene:213054,ENSEMBL:ENSMUSG00000038766	MGI:95612	protein coding gene	GA repeat binding protein, beta 2
3	gene	95.21746	95.22666	positive	MGI_C57BL6J_4439664	Gm16740	NCBI_Gene:100504029,ENSEMBL:ENSMUSG00000097167	MGI:4439664	lncRNA gene	predicted gene, 16740
3	gene	95.21854	95.23220	negative	MGI_C57BL6J_1929671	Mllt11	NCBI_Gene:56772,ENSEMBL:ENSMUSG00000053192	MGI:1929671	protein coding gene	myeloid/lymphoid or mixed-lineage leukemia, translocated to, 11
3	gene	95.22842	95.23642	positive	MGI_C57BL6J_1889510	Cdc42se1	NCBI_Gene:57912,ENSEMBL:ENSMUSG00000046722	MGI:1889510	protein coding gene	CDC42 small effector 1
3	gene	95.23692	95.24160	negative	MGI_C57BL6J_2684974	Gm128	NCBI_Gene:229588,ENSEMBL:ENSMUSG00000068860	MGI:2684974	protein coding gene	predicted gene 128
3	gene	95.24127	95.25119	negative	MGI_C57BL6J_2384749	Bnipl	NCBI_Gene:171388,ENSEMBL:ENSMUSG00000028115	MGI:2384749	protein coding gene	BCL2/adenovirus E1B 19kD interacting protein like
3	gene	95.25367	95.28208	negative	MGI_C57BL6J_1925152	Prune1	NCBI_Gene:229589,ENSEMBL:ENSMUSG00000015711	MGI:1925152	protein coding gene	prune exopolyphosphatase
3	gene	95.28135	95.29617	positive	MGI_C57BL6J_1922257	Mindy1	NCBI_Gene:75007,ENSEMBL:ENSMUSG00000038712	MGI:1922257	protein coding gene	MINDY lysine 48 deubiquitinase 1
3	gene	95.29609	95.31489	negative	MGI_C57BL6J_1923711	Anxa9	NCBI_Gene:71790,ENSEMBL:ENSMUSG00000015702	MGI:1923711	protein coding gene	annexin A9
3	gene	95.30708	95.31513	negative	MGI_C57BL6J_1923443	6330562C20Rik	ENSEMBL:ENSMUSG00000093424	MGI:1923443	lncRNA gene	RIKEN cDNA 6330562C20 gene
3	gene	95.31479	95.32360	positive	MGI_C57BL6J_1924143	Cers2	NCBI_Gene:76893,ENSEMBL:ENSMUSG00000015714	MGI:1924143	protein coding gene	ceramide synthase 2
3	gene	95.32353	95.35720	negative	MGI_C57BL6J_1934229	Setdb1	NCBI_Gene:84505,ENSEMBL:ENSMUSG00000015697	MGI:1934229	protein coding gene	SET domain, bifurcated 1
3	pseudogene	95.35278	95.35298	positive	MGI_C57BL6J_5662715	Gm42578	ENSEMBL:ENSMUSG00000105860	MGI:5662715	pseudogene	predicted gene 42578
3	gene	95.35613	95.35757	positive	MGI_C57BL6J_5610728	Gm37500	NCBI_Gene:108168884,ENSEMBL:ENSMUSG00000103900	MGI:5610728	protein coding gene	predicted gene, 37500
3	gene	95.38646	95.40284	negative	MGI_C57BL6J_1914904	4930558C23Rik	NCBI_Gene:67654,ENSEMBL:ENSMUSG00000105734	MGI:1914904	protein coding gene	RIKEN cDNA 4930558C23 gene
3	pseudogene	95.41030	95.41124	negative	MGI_C57BL6J_3643219	Gm5070	NCBI_Gene:277589,ENSEMBL:ENSMUSG00000096177	MGI:3643219	pseudogene	predicted gene 5070
3	pseudogene	95.41498	95.41545	negative	MGI_C57BL6J_3647108	Gm9173	NCBI_Gene:101055724,ENSEMBL:ENSMUSG00000104646	MGI:3647108	pseudogene	predicted gene 9173
3	pseudogene	95.42735	95.43109	positive	MGI_C57BL6J_3782533	Gm4349	NCBI_Gene:100043305,ENSEMBL:ENSMUSG00000097532	MGI:3782533	pseudogene	predicted gene 4349
3	gene	95.43437	95.49724	positive	MGI_C57BL6J_88071	Arnt	NCBI_Gene:11863,ENSEMBL:ENSMUSG00000015522	MGI:88071	protein coding gene	aryl hydrocarbon receptor nuclear translocator
3	pseudogene	95.46119	95.46154	positive	MGI_C57BL6J_5662809	Gm42672	ENSEMBL:ENSMUSG00000105395	MGI:5662809	pseudogene	predicted gene 42672
3	gene	95.49921	95.50939	positive	MGI_C57BL6J_107823	Ctsk	NCBI_Gene:13038,ENSEMBL:ENSMUSG00000028111	MGI:107823	protein coding gene	cathepsin K
3	gene	95.52321	95.52450	negative	MGI_C57BL6J_5622981	Gm40096	NCBI_Gene:105244499	MGI:5622981	lncRNA gene	predicted gene, 40096
3	gene	95.52679	95.55640	positive	MGI_C57BL6J_107341	Ctss	NCBI_Gene:13040,ENSEMBL:ENSMUSG00000038642	MGI:107341	protein coding gene	cathepsin S
3	pseudogene	95.53041	95.53104	positive	MGI_C57BL6J_3776505	Hmgb1-ps5	NCBI_Gene:100043312,ENSEMBL:ENSMUSG00000083822	MGI:3776505	pseudogene	high mobility group box 1, pseudogene 5
3	gene	95.55964	95.58786	positive	MGI_C57BL6J_1915231	Hormad1	NCBI_Gene:67981,ENSEMBL:ENSMUSG00000028109	MGI:1915231	protein coding gene	HORMA domain containing 1
3	gene	95.58588	95.58883	negative	MGI_C57BL6J_5622982	Gm40097	NCBI_Gene:105244500	MGI:5622982	lncRNA gene	predicted gene, 40097
3	gene	95.58892	95.61925	positive	MGI_C57BL6J_1917129	Golph3l	NCBI_Gene:229593,ENSEMBL:ENSMUSG00000046519	MGI:1917129	protein coding gene	golgi phosphoprotein 3-like
3	gene	95.58897	95.59057	positive	MGI_C57BL6J_5662808	Gm42671	ENSEMBL:ENSMUSG00000105460	MGI:5662808	unclassified gene	predicted gene 42671
3	pseudogene	95.62224	95.62281	positive	MGI_C57BL6J_3644167	Rps10-ps1	NCBI_Gene:668457,ENSEMBL:ENSMUSG00000060438	MGI:3644167	pseudogene	ribosomal protein S10, pseudogene 1
3	gene	95.62498	95.63212	positive	MGI_C57BL6J_1891189	Ensa	NCBI_Gene:56205,ENSEMBL:ENSMUSG00000038619	MGI:1891189	protein coding gene	endosulfine alpha
3	gene	95.63930	95.64105	positive	MGI_C57BL6J_3026962	E330034L11Rik	ENSEMBL:ENSMUSG00000106383	MGI:3026962	unclassified gene	RIKEN cDNA E330034L11 gene
3	gene	95.65841	95.66318	positive	MGI_C57BL6J_101769	Mcl1	NCBI_Gene:17210,ENSEMBL:ENSMUSG00000038612	MGI:101769	protein coding gene	myeloid cell leukemia sequence 1
3	gene	95.67620	95.68813	negative	MGI_C57BL6J_2389008	Adamtsl4	NCBI_Gene:229595,ENSEMBL:ENSMUSG00000015850	MGI:2389008	protein coding gene	ADAMTS-like 4
3	gene	95.73415	95.73987	negative	MGI_C57BL6J_103060	Ecm1	NCBI_Gene:13601,ENSEMBL:ENSMUSG00000028108	MGI:103060	protein coding gene	extracellular matrix protein 1
3	gene	95.73491	95.73497	negative	MGI_C57BL6J_5531219	Mir7014	miRBase:MI0022863,NCBI_Gene:102466787,ENSEMBL:ENSMUSG00000098737	MGI:5531219	miRNA gene	microRNA 7014
3	gene	95.73997	95.76021	negative	MGI_C57BL6J_1919057	Tars2	NCBI_Gene:71807,ENSEMBL:ENSMUSG00000028107	MGI:1919057	protein coding gene	threonyl-tRNA synthetase 2, mitochondrial (putative)
3	gene	95.75987	95.81979	negative	MGI_C57BL6J_1922387	Rprd2	NCBI_Gene:75137,ENSEMBL:ENSMUSG00000028106	MGI:1922387	protein coding gene	regulation of nuclear pre-mRNA domain containing 2
3	pseudogene	95.78072	95.78087	positive	MGI_C57BL6J_5663573	Gm43436	ENSEMBL:ENSMUSG00000104967	MGI:5663573	pseudogene	predicted gene 43436
3	gene	95.79670	95.79688	negative	MGI_C57BL6J_5456138	Gm26361	ENSEMBL:ENSMUSG00000089493	MGI:5456138	snRNA gene	predicted gene, 26361
3	pseudogene	95.80482	95.80652	positive	MGI_C57BL6J_5010000	Gm17815	NCBI_Gene:100306934,ENSEMBL:ENSMUSG00000105093	MGI:5010000	pseudogene	predicted gene, 17815
3	gene	95.81905	95.82190	positive	MGI_C57BL6J_5589107	Gm29948	NCBI_Gene:102631665	MGI:5589107	lncRNA gene	predicted gene, 29948
3	gene	95.83012	95.85680	negative	MGI_C57BL6J_1918017	Prpf3	NCBI_Gene:70767,ENSEMBL:ENSMUSG00000015748	MGI:1918017	protein coding gene	pre-mRNA processing factor 3
3	gene	95.85597	95.86149	positive	MGI_C57BL6J_5477088	Gm26594	ENSEMBL:ENSMUSG00000097189	MGI:5477088	lncRNA gene	predicted gene, 26594
3	gene	95.86263	95.87155	negative	MGI_C57BL6J_1913542	Mrps21	NCBI_Gene:66292,ENSEMBL:ENSMUSG00000054312	MGI:1913542	protein coding gene	mitochondrial ribosomal protein S21
3	gene	95.87152	95.88909	positive	MGI_C57BL6J_1923991	C920021L13Rik	NCBI_Gene:100042889,ENSEMBL:ENSMUSG00000080727	MGI:1923991	lncRNA gene	RIKEN cDNA C920021L13 gene
3	gene	95.87850	95.88225	negative	MGI_C57BL6J_2684975	Ciart	NCBI_Gene:229599,ENSEMBL:ENSMUSG00000038550	MGI:2684975	protein coding gene	circadian associated repressor of transcription
3	gene	95.88395	95.89295	negative	MGI_C57BL6J_2385885	BC028528	NCBI_Gene:229600,ENSEMBL:ENSMUSG00000038543	MGI:2385885	protein coding gene	cDNA sequence BC028528
3	gene	95.89392	95.89859	positive	MGI_C57BL6J_2385110	Aph1a	NCBI_Gene:226548,ENSEMBL:ENSMUSG00000015750	MGI:2385110	protein coding gene	aph1 homolog A, gamma secretase subunit
3	gene	95.89777	95.90512	negative	MGI_C57BL6J_1344341	Car14	NCBI_Gene:23831,ENSEMBL:ENSMUSG00000038526	MGI:1344341	protein coding gene	carbonic anhydrase 14
3	gene	95.92588	95.92902	negative	MGI_C57BL6J_5826452	Gm46815	NCBI_Gene:108168885	MGI:5826452	lncRNA gene	predicted gene, 46815
3	gene	95.92924	95.94739	positive	MGI_C57BL6J_1913721	Anp32e	NCBI_Gene:66471,ENSEMBL:ENSMUSG00000015749	MGI:1913721	protein coding gene	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
3	gene	95.94009	95.94257	positive	MGI_C57BL6J_5663512	Gm43375	ENSEMBL:ENSMUSG00000106262	MGI:5663512	unclassified gene	predicted gene 43375
3	pseudogene	95.96403	95.96439	negative	MGI_C57BL6J_5434296	Gm20940	ENSEMBL:ENSMUSG00000106640	MGI:5434296	pseudogene	predicted gene, 20940
3	pseudogene	95.98281	95.98360	positive	MGI_C57BL6J_3782273	Gm4097	NCBI_Gene:100042898	MGI:3782273	pseudogene	predicted gene 4097
3	gene	95.98551	95.98697	positive	MGI_C57BL6J_3646918	Gm9054	NCBI_Gene:668224	MGI:3646918	lncRNA gene	predicted gene 9054
3	gene	95.98843	95.99600	negative	MGI_C57BL6J_1914470	Plekho1	NCBI_Gene:67220,ENSEMBL:ENSMUSG00000015745	MGI:1914470	protein coding gene	pleckstrin homology domain containing, family O member 1
3	gene	95.99592	95.99646	positive	MGI_C57BL6J_3646916	Gm9052	NA	NA	unclassified gene	predicted gene 9052
3	gene	95.99983	96.05847	negative	MGI_C57BL6J_891965	Vps45	NCBI_Gene:22365,ENSEMBL:ENSMUSG00000015747	MGI:891965	protein coding gene	vacuolar protein sorting 45
3	pseudogene	96.08687	96.08706	positive	MGI_C57BL6J_5663691	Gm43554	ENSEMBL:ENSMUSG00000105995	MGI:5663691	pseudogene	predicted gene 43554
3	gene	96.09817	96.10436	negative	MGI_C57BL6J_5589203	Gm30044	NCBI_Gene:102631798	MGI:5589203	lncRNA gene	predicted gene, 30044
3	gene	96.10451	96.16113	positive	MGI_C57BL6J_2654703	Otud7b	NCBI_Gene:229603,ENSEMBL:ENSMUSG00000038495	MGI:2654703	protein coding gene	OTU domain containing 7B
3	gene	96.16195	96.17172	positive	MGI_C57BL6J_2652817	Mtmr11	NCBI_Gene:194126,ENSEMBL:ENSMUSG00000045934	MGI:2652817	protein coding gene	myotubularin related protein 11
3	gene	96.16746	96.17242	negative	MGI_C57BL6J_4937324	Gm17690	ENSEMBL:ENSMUSG00000097204	MGI:4937324	lncRNA gene	predicted gene, 17690
3	gene	96.17233	96.17756	positive	MGI_C57BL6J_109580	Sf3b4	NCBI_Gene:107701,ENSEMBL:ENSMUSG00000068856	MGI:109580	protein coding gene	splicing factor 3b, subunit 4
3	gene	96.17636	96.17649	positive	MGI_C57BL6J_5451804	Gm22027	ENSEMBL:ENSMUSG00000084686	MGI:5451804	snoRNA gene	predicted gene, 22027
3	gene	96.18115	96.19552	positive	MGI_C57BL6J_1927139	Sv2a	NCBI_Gene:64051,ENSEMBL:ENSMUSG00000038486	MGI:1927139	protein coding gene	synaptic vesicle glycoprotein 2 a
3	gene	96.19658	96.21971	negative	MGI_C57BL6J_1916418	Bola1	NCBI_Gene:69168,ENSEMBL:ENSMUSG00000015943	MGI:1916418	protein coding gene	bolA-like 1 (E. coli)
3	gene	96.20963	96.22017	negative	MGI_C57BL6J_3705796	Gm15444	ENSEMBL:ENSMUSG00000086556	MGI:3705796	lncRNA gene	predicted gene 15444
3	gene	96.21986	96.22035	positive	MGI_C57BL6J_2448314	H2ac21	NCBI_Gene:621893,ENSEMBL:ENSMUSG00000063689	MGI:2448314	protein coding gene	H2A clustered histone 21
3	gene	96.22036	96.22088	negative	MGI_C57BL6J_2448316	H2ac20	NCBI_Gene:319176,ENSEMBL:ENSMUSG00000068855	MGI:2448316	protein coding gene	H2A clustered histone 20
3	gene	96.22050	96.22064	positive	MGI_C57BL6J_5690884	Gm44492	ENSEMBL:ENSMUSG00000106431	MGI:5690884	miRNA gene	predicted gene, 44492
3	gene	96.22107	96.22374	positive	MGI_C57BL6J_2448415	H2bc21	NCBI_Gene:319190,ENSEMBL:ENSMUSG00000068854	MGI:2448415	protein coding gene	H2B clustered histone 21
3	gene	96.23811	96.23913	negative	MGI_C57BL6J_2448357	H3c15	NCBI_Gene:97114,ENSEMBL:ENSMUSG00000081058	MGI:2448357	protein coding gene	H3 clustered histone 15
3	gene	96.23939	96.24182	positive	MGI_C57BL6J_5313079	Gm20632	ENSEMBL:ENSMUSG00000093577	MGI:5313079	lncRNA gene	predicted gene 20632
3	gene	96.23975	96.24037	negative	MGI_C57BL6J_2448283	H2ac19	NCBI_Gene:319192,ENSEMBL:ENSMUSG00000063954	MGI:2448283	protein coding gene	H2A clustered histone 19
3	gene	96.23987	96.24000	positive	MGI_C57BL6J_6096187	Gm47311	ENSEMBL:ENSMUSG00000106587	MGI:6096187	miRNA gene	predicted gene, 47311
3	gene	96.24355	96.24638	negative	MGI_C57BL6J_5313080	Gm20633	ENSEMBL:ENSMUSG00000093553	MGI:5313080	lncRNA gene	predicted gene 20633
3	gene	96.24550	96.24608	positive	MGI_C57BL6J_96097	H2ac18	NCBI_Gene:15267,ENSEMBL:ENSMUSG00000064220	MGI:96097	protein coding gene	H2A clustered histone 18
3	gene	96.24555	96.24851	positive	MGI_C57BL6J_5313081	Gm20634	ENSEMBL:ENSMUSG00000070392	MGI:5313081	lncRNA gene	predicted gene 20634
3	gene	96.24583	96.24596	negative	MGI_C57BL6J_6096191	Gm47313	ENSEMBL:ENSMUSG00000105610	MGI:6096191	miRNA gene	predicted gene, 47313
3	gene	96.24668	96.24851	positive	MGI_C57BL6J_2448355	H3c14	NCBI_Gene:15077,ENSEMBL:ENSMUSG00000093769	MGI:2448355	protein coding gene	H3 clustered histone 14
3	gene	96.25462	96.25775	negative	MGI_C57BL6J_5313074	Gm20627	NCBI_Gene:102631874,ENSEMBL:ENSMUSG00000093507	MGI:5313074	lncRNA gene	predicted gene 20627
3	gene	96.26168	96.26332	negative	MGI_C57BL6J_2140113	H4c14	NCBI_Gene:97122,ENSEMBL:ENSMUSG00000091405	MGI:2140113	protein coding gene	H4 clustered histone 14
3	gene	96.26378	96.26539	positive	MGI_C57BL6J_5611455	Gm38227	ENSEMBL:ENSMUSG00000103940	MGI:5611455	unclassified gene	predicted gene, 38227
3	gene	96.26708	96.27029	negative	MGI_C57BL6J_5313075	Gm20628	ENSEMBL:ENSMUSG00000093656	MGI:5313075	lncRNA gene	predicted gene 20628
3	gene	96.26865	96.26915	positive	MGI_C57BL6J_2448351	H3c13	NCBI_Gene:319154,ENSEMBL:ENSMUSG00000074403	MGI:2448351	protein coding gene	H3 clustered histone 13
3	gene	96.26970	96.27019	positive	MGI_C57BL6J_2448413	H2bc18	NCBI_Gene:319189,ENSEMBL:ENSMUSG00000105827	MGI:2448413	protein coding gene	H2B clustered histone 18
3	gene	96.26972	96.27900	positive	MGI_C57BL6J_5662880	Gm42743	ENSEMBL:ENSMUSG00000050936	MGI:5662880	lncRNA gene	predicted gene 42743
3	gene	96.28291	96.29397	negative	MGI_C57BL6J_95498	Fcgr1	NCBI_Gene:14129,ENSEMBL:ENSMUSG00000015947	MGI:95498	protein coding gene	Fc receptor, IgG, high affinity I
3	gene	96.32207	96.32215	positive	MGI_C57BL6J_4413741	n-TNgtt4	NCBI_Gene:102467475	MGI:4413741	tRNA gene	nuclear encoded tRNA asparagine 4 (anticodon GTT)
3	gene	96.32842	96.32859	positive	MGI_C57BL6J_5454607	Gm24830	ENSEMBL:ENSMUSG00000095701	MGI:5454607	snRNA gene	predicted gene, 24830
3	gene	96.33274	96.33281	positive	MGI_C57BL6J_4414101	n-TVcac10	NCBI_Gene:102467407	MGI:4414101	tRNA gene	nuclear encoded tRNA valine 10 (anticodon CAC)
3	gene	96.33461	96.33469	negative	MGI_C57BL6J_4413742	n-TNgtt5	NCBI_Gene:102467256	MGI:4413742	tRNA gene	nuclear encoded tRNA asparagine 5 (anticodon GTT)
3	gene	96.34116	96.34123	negative	MGI_C57BL6J_4413829	n-TQctg5	NCBI_Gene:102467292	MGI:4413829	tRNA gene	nuclear encoded tRNA glutamine 5 (anticodon CTG)
3	gene	96.34529	96.35881	positive	MGI_C57BL6J_4937214	Platr30	NCBI_Gene:100504145,ENSEMBL:ENSMUSG00000097851	MGI:4937214	lncRNA gene	pluripotency associated transcript 30
3	gene	96.34668	96.34675	positive	MGI_C57BL6J_4413854	n-TEttc3	NCBI_Gene:102467302	MGI:4413854	tRNA gene	nuclear encoded tRNA glutamic acid 3 (anticodon TTC)
3	gene	96.34863	96.35715	negative	MGI_C57BL6J_5477047	Gm26553	NCBI_Gene:74690,ENSEMBL:ENSMUSG00000097807	MGI:5477047	lncRNA gene	predicted gene, 26553
3	gene	96.35117	96.35124	negative	MGI_C57BL6J_4413866	n-TGccc5	NCBI_Gene:102467528	MGI:4413866	tRNA gene	nuclear encoded tRNA glycine 5 (anticodon CCC)
3	gene	96.35995	96.36012	negative	MGI_C57BL6J_97974	Rnu1b1	NCBI_Gene:19844,ENSEMBL:ENSMUSG00000095580	MGI:97974	snRNA gene	U1b1 small nuclear RNA
3	gene	96.37402	96.37418	positive	MGI_C57BL6J_104624	Rnu1b2	NCBI_Gene:19845,ENSEMBL:ENSMUSG00000093834	MGI:104624	snRNA gene	U1b2 small nuclear RNA
3	gene	96.37565	96.38886	negative	MGI_C57BL6J_4937209	Gm17575	ENSEMBL:ENSMUSG00000097420	MGI:4937209	lncRNA gene	predicted gene, 17575
3	gene	96.37698	96.38552	positive	MGI_C57BL6J_5477183	Gm26689	NCBI_Gene:102632400,ENSEMBL:ENSMUSG00000097753	MGI:5477183	lncRNA gene	predicted gene, 26689
3	gene	96.38291	96.38298	positive	MGI_C57BL6J_4413865	n-TGccc1	NCBI_Gene:102467307	MGI:4413865	tRNA gene	nuclear encoded tRNA glycine 1 (anticodon CCC)
3	gene	96.38741	96.38748	negative	MGI_C57BL6J_4413855	n-TEttc2	NCBI_Gene:102467523	MGI:4413855	tRNA gene	nuclear encoded tRNA glutamic acid 2 (anticodon TTC)
3	gene	96.39906	96.39913	negative	MGI_C57BL6J_4413828	n-TQctg4	NCBI_Gene:102467413	MGI:4413828	tRNA gene	nuclear encoded tRNA glutamine 4 (anticodon CTG)
3	gene	96.40115	96.40201	negative	MGI_C57BL6J_1922199	4930477E14Rik	ENSEMBL:ENSMUSG00000097539	MGI:1922199	lncRNA gene	RIKEN cDNA 4930477E14 gene
3	gene	96.40222	96.40229	positive	MGI_C57BL6J_4413747	n-TNgtt10	NCBI_Gene:102467258	MGI:4413747	tRNA gene	nuclear encoded tRNA asparagine 10 (anticodon GTT)
3	gene	96.40238	96.40295	positive	MGI_C57BL6J_5477148	Gm26654	NCBI_Gene:105244502,ENSEMBL:ENSMUSG00000097299	MGI:5477148	lncRNA gene	predicted gene, 26654
3	pseudogene	96.40738	96.40946	negative	MGI_C57BL6J_103115	Pafah1b1-ps1	NCBI_Gene:18473,ENSEMBL:ENSMUSG00000097041	MGI:103115	pseudogene	platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit, pseudogene 1
3	gene	96.41007	96.41014	positive	MGI_C57BL6J_4413896	n-THgtg6	NCBI_Gene:102467539	MGI:4413896	tRNA gene	nuclear encoded tRNA histidine 6 (anticodon GTG)
3	pseudogene	96.41291	96.41336	negative	MGI_C57BL6J_5439429	Gm21960	ENSEMBL:ENSMUSG00000095836	MGI:5439429	pseudogene	predicted gene, 21960
3	gene	96.41444	96.41486	negative	MGI_C57BL6J_109558	Terc	NCBI_Gene:21748,ENSEMBL:ENSMUSG00000064796,ENSEMBL:ENSMUSG00000118406	MGI:109558	telomerase RNA gene	telomerase RNA component
3	gene	96.42273	96.42290	positive	MGI_C57BL6J_5453913	Gm24136	ENSEMBL:ENSMUSG00000095513	MGI:5453913	snRNA gene	predicted gene, 24136
3	gene	96.42403	96.42410	negative	MGI_C57BL6J_4413867	n-TGccc6	NCBI_Gene:102467308	MGI:4413867	tRNA gene	nuclear encoded tRNA glycine 6 (anticodon CCC)
3	gene	96.42824	96.42831	positive	MGI_C57BL6J_4413962	n-TKctt15	NCBI_Gene:102467347	MGI:4413962	tRNA gene	nuclear encoded tRNA lysine 15 (anticodon CTT)
3	gene	96.43379	96.45231	negative	MGI_C57BL6J_3618860	BC107364	NCBI_Gene:329716,ENSEMBL:ENSMUSG00000046317	MGI:3618860	protein coding gene	cDNA sequence BC107364
3	gene	96.43597	96.43604	positive	MGI_C57BL6J_4413892	n-THgtg2	NCBI_Gene:22053	MGI:4413892	tRNA gene	nuclear encoded tRNA histidine 2 (anticodon GTG)
3	gene	96.44994	96.45164	positive	MGI_C57BL6J_5456009	Gm26232	NCBI_Gene:102632589,ENSEMBL:ENSMUSG00000096838	MGI:5456009	snRNA gene	predicted gene, 26232
3	gene	96.45143	96.45150	positive	MGI_C57BL6J_4413748	n-TNgtt11	NCBI_Gene:102467478	MGI:4413748	tRNA gene	nuclear encoded tRNA asparagine 11 (anticodon GTT)
3	gene	96.45249	96.45257	positive	MGI_C57BL6J_4413897	n-THgtg7	NCBI_Gene:102467320	MGI:4413897	tRNA gene	nuclear encoded tRNA histidine 7 (anticodon GTG)
3	pseudogene	96.45454	96.45595	negative	MGI_C57BL6J_3779840	Gm9207	NCBI_Gene:668500,ENSEMBL:ENSMUSG00000104642	MGI:3779840	pseudogene	predicted gene 9207
3	gene	96.45807	96.45814	negative	MGI_C57BL6J_4413899	n-THgtg9	NCBI_Gene:102467414	MGI:4413899	tRNA gene	nuclear encoded tRNA histidine 9 (anticodon GTG)
3	gene	96.45821	96.47066	positive	MGI_C57BL6J_3641752	Gm10685	NCBI_Gene:102632901,ENSEMBL:ENSMUSG00000106429	MGI:3641752	lncRNA gene	predicted gene 10685
3	gene	96.45900	96.46034	negative	MGI_C57BL6J_5622984	Gm40099	NCBI_Gene:105244504	MGI:5622984	lncRNA gene	predicted gene, 40099
3	gene	96.45914	96.45921	negative	MGI_C57BL6J_4413750	n-TNgtt13	NCBI_Gene:102467479	MGI:4413750	tRNA gene	nuclear encoded tRNA asparagine 13 (anticodon GTT)
3	gene	96.46002	96.46019	negative	MGI_C57BL6J_104604	Rnu1b6	NCBI_Gene:19847,ENSEMBL:ENSMUSG00000065773	MGI:104604	snRNA gene	U1b6 small nuclear RNA
3	gene	96.46397	96.46404	negative	MGI_C57BL6J_4413901	n-THgtg1	NCBI_Gene:102467321	MGI:4413901	tRNA gene	nuclear encoded tRNA histidine 1 (anticodon GTG)
3	gene	96.46407	96.46692	negative	MGI_C57BL6J_5663671	Gm43534	ENSEMBL:ENSMUSG00000106641	MGI:5663671	unclassified gene	predicted gene 43534
3	gene	96.47939	96.47946	positive	MGI_C57BL6J_4413827	n-TQctg3	NCBI_Gene:102467511	MGI:4413827	tRNA gene	nuclear encoded tRNA glutamine 3 (anticodon CTG)
3	gene	96.48516	96.48528	positive	MGI_C57BL6J_5531383	Gm28001	ENSEMBL:ENSMUSG00000098392	MGI:5531383	rRNA gene	predicted gene, 28001
3	gene	96.48655	96.48672	negative	MGI_C57BL6J_5455667	Gm25890	ENSEMBL:ENSMUSG00000095260	MGI:5455667	snRNA gene	predicted gene, 25890
3	gene	96.48873	96.48889	positive	MGI_C57BL6J_5452391	Gm22614	ENSEMBL:ENSMUSG00000094812	MGI:5452391	snRNA gene	predicted gene, 22614
3	gene	96.49778	96.49785	positive	MGI_C57BL6J_4413749	n-TNgtt12	NCBI_Gene:102467259	MGI:4413749	tRNA gene	nuclear encoded tRNA asparagine 12 (anticodon GTT)
3	gene	96.49951	96.49958	negative	MGI_C57BL6J_4413963	n-TKctt16	NCBI_Gene:102467567	MGI:4413963	tRNA gene	nuclear encoded tRNA lysine 16 (anticodon CTT)
3	gene	96.50037	96.50044	negative	MGI_C57BL6J_4413898	n-THgtg8	NCBI_Gene:104358	MGI:4413898	tRNA gene	nuclear encoded tRNA histidine 8 (anticodon GTG)
3	gene	96.50101	96.50108	negative	MGI_C57BL6J_4413890	n-TGtcc7	NCBI_Gene:102467318	MGI:4413890	tRNA gene	nuclear encoded tRNA glycine 7 (anticodon TCC)
3	gene	96.50145	96.50152	negative	MGI_C57BL6J_4413853	n-TEctc13	NCBI_Gene:102467428	MGI:4413853	tRNA gene	nuclear encoded tRNA glutamic acid 13 (anticodon CTC)
3	gene	96.50639	96.50878	negative	MGI_C57BL6J_5622985	Gm40100	NCBI_Gene:105244505	MGI:5622985	lncRNA gene	predicted gene, 40100
3	gene	96.52516	96.52922	positive	MGI_C57BL6J_1916835	Hjv	NCBI_Gene:69585,ENSEMBL:ENSMUSG00000038403	MGI:1916835	protein coding gene	hemojuvelin BMP co-receptor
3	gene	96.55576	96.56680	negative	MGI_C57BL6J_3641753	Gm15441	NCBI_Gene:100038464,ENSEMBL:ENSMUSG00000074398	MGI:3641753	lncRNA gene	predicted gene 15441
3	gene	96.55796	96.56188	positive	MGI_C57BL6J_1889549	Txnip	NCBI_Gene:56338,ENSEMBL:ENSMUSG00000038393	MGI:1889549	protein coding gene	thioredoxin interacting protein
3	gene	96.57698	96.58066	positive	MGI_C57BL6J_3826531	Gm16253	ENSEMBL:ENSMUSG00000087610	MGI:3826531	protein coding gene	predicted gene 16253
3	gene	96.57787	96.59418	negative	MGI_C57BL6J_1917120	Polr3gl	NCBI_Gene:69870,ENSEMBL:ENSMUSG00000028104	MGI:1917120	protein coding gene	polymerase (RNA) III (DNA directed) polypeptide G like
3	gene	96.59548	96.60013	positive	MGI_C57BL6J_3617846	Ankrd34a	NCBI_Gene:545554,ENSEMBL:ENSMUSG00000049097	MGI:3617846	protein coding gene	ankyrin repeat domain 34A
3	gene	96.60113	96.62617	positive	MGI_C57BL6J_3036267	Lix1l	NCBI_Gene:280411,ENSEMBL:ENSMUSG00000049288	MGI:3036267	protein coding gene	Lix1-like
3	pseudogene	96.60666	96.62982	negative	MGI_C57BL6J_2442586	6330549D23Rik	NCBI_Gene:229613,ENSEMBL:ENSMUSG00000045327	MGI:2442586	pseudogene	RIKEN cDNA 6330549D23 gene
3	gene	96.62993	96.63379	positive	MGI_C57BL6J_1913129	Rbm8a	NCBI_Gene:60365,ENSEMBL:ENSMUSG00000038374	MGI:1913129	protein coding gene	RNA binding motif protein 8a
3	gene	96.63536	96.64538	positive	MGI_C57BL6J_1338882	Pex11b	NCBI_Gene:18632,ENSEMBL:ENSMUSG00000028102	MGI:1338882	protein coding gene	peroxisomal biogenesis factor 11 beta
3	gene	96.63547	96.65310	positive	MGI_C57BL6J_5663094	Gm42957	ENSEMBL:ENSMUSG00000106447	MGI:5663094	protein coding gene	predicted gene 42957
3	gene	96.64558	96.66452	positive	MGI_C57BL6J_2153482	Itga10	NCBI_Gene:213119,ENSEMBL:ENSMUSG00000090210	MGI:2153482	protein coding gene	integrin, alpha 10
3	pseudogene	96.66647	96.66702	negative	MGI_C57BL6J_3648207	Rpl21-ps11	NCBI_Gene:433630,ENSEMBL:ENSMUSG00000105144	MGI:3648207	pseudogene	ribosomal protein L21, pseudogene 11
3	gene	96.67013	96.69103	positive	MGI_C57BL6J_2442590	Ankrd35	NCBI_Gene:213121,ENSEMBL:ENSMUSG00000038354	MGI:2442590	protein coding gene	ankyrin repeat domain 35
3	gene	96.69386	96.69701	negative	MGI_C57BL6J_2444301	C230057H02Rik	NA	NA	unclassified gene	RIKEN cDNA C230057H02 gene
3	gene	96.69638	96.70607	positive	MGI_C57BL6J_1913126	Pias3	NCBI_Gene:229615,ENSEMBL:ENSMUSG00000028101	MGI:1913126	protein coding gene	protein inhibitor of activated STAT 3
3	gene	96.70589	96.70893	negative	MGI_C57BL6J_1925623	Nudt17	NCBI_Gene:78373,ENSEMBL:ENSMUSG00000028100	MGI:1925623	protein coding gene	nudix (nucleoside diphosphate linked moiety X)-type motif 17
3	gene	96.71149	96.72763	negative	MGI_C57BL6J_1921664	Polr3c	NCBI_Gene:74414,ENSEMBL:ENSMUSG00000028099	MGI:1921664	protein coding gene	polymerase (RNA) III (DNA directed) polypeptide C
3	gene	96.72427	96.72440	negative	MGI_C57BL6J_5452358	Gm22581	ENSEMBL:ENSMUSG00000065669	MGI:5452358	snoRNA gene	predicted gene, 22581
3	gene	96.72453	96.72532	negative	MGI_C57BL6J_5662920	Gm42783	ENSEMBL:ENSMUSG00000104795	MGI:5662920	unclassified gene	predicted gene 42783
3	gene	96.72759	96.79164	positive	MGI_C57BL6J_1915095	Rnf115	NCBI_Gene:67845,ENSEMBL:ENSMUSG00000028098	MGI:1915095	protein coding gene	ring finger protein 115
3	gene	96.78432	96.78485	positive	MGI_C57BL6J_5662919	Gm42782	ENSEMBL:ENSMUSG00000105976	MGI:5662919	unclassified gene	predicted gene 42782
3	gene	96.79876	96.82935	negative	MGI_C57BL6J_1860383	Cd160	NCBI_Gene:54215,ENSEMBL:ENSMUSG00000038304	MGI:1860383	protein coding gene	CD160 antigen
3	gene	96.82928	96.87093	positive	MGI_C57BL6J_1928901	Pdzk1	NCBI_Gene:59020,ENSEMBL:ENSMUSG00000038298	MGI:1928901	protein coding gene	PDZ domain containing 1
3	gene	96.82983	96.83210	negative	MGI_C57BL6J_1914833	4930442L01Rik	NCBI_Gene:67583,ENSEMBL:ENSMUSG00000087223	MGI:1914833	lncRNA gene	RIKEN cDNA 4930442L01 gene
3	gene	96.86828	96.90535	negative	MGI_C57BL6J_1914799	Gpr89	NCBI_Gene:67549,ENSEMBL:ENSMUSG00000028096	MGI:1914799	protein coding gene	G protein-coupled receptor 89
3	gene	96.90469	97.07742	positive	MGI_C57BL6J_95716	Gja5	NCBI_Gene:14613,ENSEMBL:ENSMUSG00000057123	MGI:95716	protein coding gene	gap junction protein, alpha 5
3	gene	96.91357	96.92605	negative	MGI_C57BL6J_99953	Gja8	NCBI_Gene:14616,ENSEMBL:ENSMUSG00000049908	MGI:99953	protein coding gene	gap junction protein, alpha 8
3	gene	96.99872	97.00077	negative	MGI_C57BL6J_1925330	9230114J08Rik	ENSEMBL:ENSMUSG00000105385	MGI:1925330	lncRNA gene	RIKEN cDNA 9230114J08 gene
3	gene	97.04666	97.09279	negative	MGI_C57BL6J_1923138	4930573H18Rik	NCBI_Gene:75888,ENSEMBL:ENSMUSG00000104766	MGI:1923138	lncRNA gene	RIKEN cDNA 4930573H18 gene
3	gene	97.07415	97.07602	positive	MGI_C57BL6J_5590279	Gm31120	NCBI_Gene:102633248	MGI:5590279	lncRNA gene	predicted gene, 31120
3	gene	97.10109	97.10296	positive	MGI_C57BL6J_5590342	Gm31183	NCBI_Gene:102633334	MGI:5590342	lncRNA gene	predicted gene, 31183
3	pseudogene	97.12551	97.12611	negative	MGI_C57BL6J_5663359	Gm43222	ENSEMBL:ENSMUSG00000106324	MGI:5663359	pseudogene	predicted gene 43222
3	gene	97.14055	97.14066	negative	MGI_C57BL6J_5454212	Gm24435	ENSEMBL:ENSMUSG00000088511	MGI:5454212	snRNA gene	predicted gene, 24435
3	gene	97.15808	97.15816	positive	MGI_C57BL6J_4413852	n-TEctc12	NCBI_Gene:102467522	MGI:4413852	tRNA gene	nuclear encoded tRNA glutamic acid 12 (anticodon CTC)
3	gene	97.15875	97.17730	positive	MGI_C57BL6J_1931010	Acp6	NCBI_Gene:66659,ENSEMBL:ENSMUSG00000028093	MGI:1931010	protein coding gene	acid phosphatase 6, lysophosphatidic
3	gene	97.20366	97.29808	negative	MGI_C57BL6J_1924828	Bcl9	NCBI_Gene:77578,ENSEMBL:ENSMUSG00000038256	MGI:1924828	protein coding gene	B cell CLL/lymphoma 9
3	gene	97.26235	97.26565	positive	MGI_C57BL6J_5662645	Gm42508	ENSEMBL:ENSMUSG00000106536	MGI:5662645	unclassified gene	predicted gene 42508
3	gene	97.27063	97.27162	negative	MGI_C57BL6J_1924948	9230110I02Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 9230110I02 gene
3	gene	97.27388	97.27506	negative	MGI_C57BL6J_5663210	Gm43073	ENSEMBL:ENSMUSG00000104745	MGI:5663210	unclassified gene	predicted gene 43073
3	gene	97.33042	97.33295	positive	MGI_C57BL6J_5622986	Gm40101	NCBI_Gene:105244507	MGI:5622986	lncRNA gene	predicted gene, 40101
3	gene	97.40745	97.42202	negative	MGI_C57BL6J_3031236	Olfr1402	NCBI_Gene:258272,ENSEMBL:ENSMUSG00000051392	MGI:3031236	protein coding gene	olfactory receptor 1402
3	gene	97.54630	97.57259	positive	MGI_C57BL6J_5622987	Gm40102	NCBI_Gene:105244508	MGI:5622987	lncRNA gene	predicted gene, 40102
3	gene	97.56074	97.61020	negative	MGI_C57BL6J_1915308	Chd1l	NCBI_Gene:68058,ENSEMBL:ENSMUSG00000028089	MGI:1915308	protein coding gene	chromodomain helicase DNA binding protein 1-like
3	gene	97.60993	97.61384	positive	MGI_C57BL6J_5663212	Gm43075	ENSEMBL:ENSMUSG00000105004	MGI:5663212	unclassified gene	predicted gene 43075
3	gene	97.61019	97.65529	positive	MGI_C57BL6J_1310004	Fmo5	NCBI_Gene:14263,ENSEMBL:ENSMUSG00000028088	MGI:1310004	protein coding gene	flavin containing monooxygenase 5
3	gene	97.65819	97.67381	positive	MGI_C57BL6J_1336185	Prkab2	NCBI_Gene:108097,ENSEMBL:ENSMUSG00000038205	MGI:1336185	protein coding gene	protein kinase, AMP-activated, beta 2 non-catalytic subunit
3	gene	97.67303	97.67469	negative	MGI_C57BL6J_4937285	Gm17651	ENSEMBL:ENSMUSG00000090441	MGI:4937285	protein coding gene	predicted gene, 17651
3	gene	97.68034	97.68206	positive	MGI_C57BL6J_5590401	Gm31242	NCBI_Gene:102633409	MGI:5590401	lncRNA gene	predicted gene, 31242
3	gene	97.68146	97.68153	positive	MGI_C57BL6J_4413826	n-TQctg2	NCBI_Gene:102467291	MGI:4413826	tRNA gene	nuclear encoded tRNA glutamine 2 (anticodon CTG)
3	gene	97.68982	97.88871	negative	MGI_C57BL6J_1891434	Pde4dip	NCBI_Gene:83679,ENSEMBL:ENSMUSG00000038170	MGI:1891434	protein coding gene	phosphodiesterase 4D interacting protein (myomegalin)
3	gene	97.69051	97.69056	negative	MGI_C57BL6J_5530881	Mir7225	miRBase:MI0023720,NCBI_Gene:102466229,ENSEMBL:ENSMUSG00000098381	MGI:5530881	miRNA gene	microRNA 7225
3	gene	97.73034	97.73714	positive	MGI_C57BL6J_5590464	Gm31305	NCBI_Gene:102633492,ENSEMBL:ENSMUSG00000105245	MGI:5590464	lncRNA gene	predicted gene, 31305
3	gene	97.74903	97.75107	positive	MGI_C57BL6J_5826453	Gm46816	NCBI_Gene:108168886	MGI:5826453	lncRNA gene	predicted gene, 46816
3	gene	97.76152	97.76277	negative	MGI_C57BL6J_2444459	A630078F23Rik	NA	NA	unclassified gene	RIKEN cDNA A630078F23 gene
3	pseudogene	97.78707	97.78785	negative	MGI_C57BL6J_5011008	Gm18823	NCBI_Gene:100417783	MGI:5011008	pseudogene	predicted gene, 18823
3	gene	97.89223	97.90109	negative	MGI_C57BL6J_3802103	Gm15999	ENSEMBL:ENSMUSG00000086557	MGI:3802103	lncRNA gene	predicted gene 15999
3	gene	97.90119	97.92328	positive	MGI_C57BL6J_1338759	Sec22b	NCBI_Gene:20333,ENSEMBL:ENSMUSG00000027879	MGI:1338759	protein coding gene	SEC22 homolog B, vesicle trafficking protein
3	gene	97.93017	97.96702	positive	MGI_C57BL6J_3648209	Gm5544	NCBI_Gene:433632,ENSEMBL:ENSMUSG00000074388	MGI:3648209	lncRNA gene	predicted gene 5544
3	gene	98.01353	98.15037	positive	MGI_C57BL6J_97364	Notch2	NCBI_Gene:18129,ENSEMBL:ENSMUSG00000027878	MGI:97364	protein coding gene	notch 2
3	gene	98.02231	98.02688	negative	MGI_C57BL6J_5622988	Gm40103	NCBI_Gene:105244509	MGI:5622988	lncRNA gene	predicted gene, 40103
3	gene	98.03069	98.03581	positive	MGI_C57BL6J_5662956	Gm42819	ENSEMBL:ENSMUSG00000105728	MGI:5662956	unclassified gene	predicted gene 42819
3	gene	98.12159	98.12465	positive	MGI_C57BL6J_5662957	Gm42820	ENSEMBL:ENSMUSG00000106427	MGI:5662957	unclassified gene	predicted gene 42820
3	gene	98.16063	98.16417	positive	MGI_C57BL6J_1918328	Adam30	NCBI_Gene:71078,ENSEMBL:ENSMUSG00000043468	MGI:1918328	protein coding gene	a disintegrin and metallopeptidase domain 30
3	pseudogene	98.18997	98.19112	negative	MGI_C57BL6J_3642065	Gm9771	NCBI_Gene:622561,ENSEMBL:ENSMUSG00000106486	MGI:3642065	pseudogene	predicted gene 9771
3	gene	98.20235	98.20676	positive	MGI_C57BL6J_5622989	Gm40104	NCBI_Gene:105244510	MGI:5622989	lncRNA gene	predicted gene, 40104
3	gene	98.22214	98.23675	positive	MGI_C57BL6J_1914959	Reg4	NCBI_Gene:67709,ENSEMBL:ENSMUSG00000027876	MGI:1914959	protein coding gene	regenerating islet-derived family, member 4
3	pseudogene	98.24860	98.24909	positive	MGI_C57BL6J_5662958	Gm42821	ENSEMBL:ENSMUSG00000104842	MGI:5662958	pseudogene	predicted gene 42821
3	gene	98.28043	98.31074	positive	MGI_C57BL6J_101939	Hmgcs2	NCBI_Gene:15360,ENSEMBL:ENSMUSG00000027875	MGI:101939	protein coding gene	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
3	gene	98.28699	98.29006	positive	MGI_C57BL6J_5663326	Gm43189	ENSEMBL:ENSMUSG00000105909	MGI:5663326	lncRNA gene	predicted gene 43189
3	gene	98.31317	98.33999	negative	MGI_C57BL6J_1355330	Phgdh	NCBI_Gene:236539,ENSEMBL:ENSMUSG00000053398	MGI:1355330	protein coding gene	3-phosphoglycerate dehydrogenase
3	gene	98.35151	98.35497	positive	MGI_C57BL6J_5590579	Gm31420	NCBI_Gene:102633639	MGI:5590579	lncRNA gene	predicted gene, 31420
3	gene	98.38134	98.75381	positive	MGI_C57BL6J_2139736	Zfp697	NCBI_Gene:242109,ENSEMBL:ENSMUSG00000050064	MGI:2139736	protein coding gene	zinc finger protein 697
3	gene	98.44567	98.45714	negative	MGI_C57BL6J_3782634	Gm4450	NCBI_Gene:100043461,ENSEMBL:ENSMUSG00000090817	MGI:3782634	protein coding gene	predicted gene 4450
3	gene	98.44720	98.44898	negative	MGI_C57BL6J_5663327	Gm43190	ENSEMBL:ENSMUSG00000106107	MGI:5663327	lncRNA gene	predicted gene 43190
3	pseudogene	98.46915	98.47322	negative	MGI_C57BL6J_5011395	Gm19210	NCBI_Gene:100418432,ENSEMBL:ENSMUSG00000106129	MGI:5011395	pseudogene	predicted gene, 19210
3	gene	98.49907	98.51058	negative	MGI_C57BL6J_96236	Hsd3b4	NCBI_Gene:15495,ENSEMBL:ENSMUSG00000095143	MGI:96236	protein coding gene	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4
3	pseudogene	98.52274	98.52669	negative	MGI_C57BL6J_5011396	Gm19211	NCBI_Gene:100418433,ENSEMBL:ENSMUSG00000105696	MGI:5011396	pseudogene	predicted gene, 19211
3	gene	98.55254	98.58881	negative	MGI_C57BL6J_3711284	Gm10681	NCBI_Gene:100043456,ENSEMBL:ENSMUSG00000095388	MGI:3711284	protein coding gene	predicted gene 10681
3	pseudogene	98.57976	98.58057	negative	MGI_C57BL6J_3648707	Gm5853	NCBI_Gene:545555,ENSEMBL:ENSMUSG00000105641	MGI:3648707	pseudogene	predicted gene 5853
3	pseudogene	98.58115	98.58829	negative	MGI_C57BL6J_3780086	Gm9678	NCBI_Gene:676433,ENSEMBL:ENSMUSG00000106456	MGI:3780086	pseudogene	predicted gene 9678
3	gene	98.61863	98.64553	negative	MGI_C57BL6J_104645	Hsd3b5	NCBI_Gene:15496,ENSEMBL:ENSMUSG00000038092	MGI:104645	protein coding gene	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5
3	pseudogene	98.66985	98.67833	negative	MGI_C57BL6J_3651917	Gm12399	NCBI_Gene:100418434,ENSEMBL:ENSMUSG00000081919	MGI:3651917	pseudogene	predicted gene 12399
3	pseudogene	98.68082	98.68824	negative	MGI_C57BL6J_3651916	Gm12400	NCBI_Gene:668543,ENSEMBL:ENSMUSG00000083331	MGI:3651916	pseudogene	predicted gene 12400
3	gene	98.70925	98.72459	negative	MGI_C57BL6J_96234	Hsd3b2	NCBI_Gene:15493,ENSEMBL:ENSMUSG00000063730	MGI:96234	protein coding gene	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2
3	gene	98.74148	98.76515	negative	MGI_C57BL6J_96235	Hsd3b3	NCBI_Gene:15494,ENSEMBL:ENSMUSG00000062410	MGI:96235	protein coding gene	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 3
3	gene	98.80550	98.81444	negative	MGI_C57BL6J_109598	Hsd3b6	NCBI_Gene:15497,ENSEMBL:ENSMUSG00000027869	MGI:109598	protein coding gene	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 6
3	pseudogene	98.81808	98.82002	negative	MGI_C57BL6J_3650847	Gm12427	ENSEMBL:ENSMUSG00000083222	MGI:3650847	pseudogene	predicted gene 12427
3	pseudogene	98.82085	98.82266	positive	MGI_C57BL6J_3650848	Gm12428	NCBI_Gene:545556,ENSEMBL:ENSMUSG00000082185	MGI:3650848	pseudogene	predicted gene 12428
3	gene	98.84235	98.85979	negative	MGI_C57BL6J_96233	Hsd3b1	NCBI_Gene:15492,ENSEMBL:ENSMUSG00000027871	MGI:96233	protein coding gene	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1
3	pseudogene	98.84287	98.84304	negative	MGI_C57BL6J_3649672	Gm12431	ENSEMBL:ENSMUSG00000082089	MGI:3649672	pseudogene	predicted gene 12431
3	pseudogene	98.84634	98.84652	negative	MGI_C57BL6J_3649670	Gm12432	ENSEMBL:ENSMUSG00000083577	MGI:3649670	pseudogene	predicted gene 12432
3	pseudogene	98.84651	98.84676	positive	MGI_C57BL6J_3649669	Gm12433	ENSEMBL:ENSMUSG00000082589	MGI:3649669	pseudogene	predicted gene 12433
3	gene	98.87452	98.89538	negative	MGI_C57BL6J_96012	Hao2	NCBI_Gene:56185,ENSEMBL:ENSMUSG00000027870	MGI:96012	protein coding gene	hydroxyacid oxidase 2
3	gene	98.89783	98.93252	negative	MGI_C57BL6J_5591039	Gm31880	NCBI_Gene:102634250	MGI:5591039	lncRNA gene	predicted gene, 31880
3	gene	98.93765	98.94126	negative	MGI_C57BL6J_1917808	5730437C11Rik	ENSEMBL:ENSMUSG00000085121	MGI:1917808	lncRNA gene	RIKEN cDNA 5730437C11 gene
3	gene	99.04982	99.05374	positive	MGI_C57BL6J_3649266	Gm12440	NCBI_Gene:102634753,ENSEMBL:ENSMUSG00000086833	MGI:3649266	lncRNA gene	predicted gene 12440
3	pseudogene	99.10057	99.10115	negative	MGI_C57BL6J_3649265	Gm12441	NCBI_Gene:102631982,ENSEMBL:ENSMUSG00000083888	MGI:3649265	pseudogene	predicted gene 12441
3	gene	99.11096	99.11570	positive	MGI_C57BL6J_5622990	Gm40105	NCBI_Gene:105244511	MGI:5622990	lncRNA gene	predicted gene, 40105
3	gene	99.11316	99.11328	negative	MGI_C57BL6J_5452118	Gm22341	ENSEMBL:ENSMUSG00000065709	MGI:5452118	snoRNA gene	predicted gene, 22341
3	gene	99.12419	99.12430	negative	MGI_C57BL6J_5453993	Gm24216	ENSEMBL:ENSMUSG00000088884	MGI:5453993	snoRNA gene	predicted gene, 24216
3	gene	99.14062	99.23919	positive	MGI_C57BL6J_1917810	Wars2	NCBI_Gene:70560,ENSEMBL:ENSMUSG00000004233	MGI:1917810	protein coding gene	tryptophanyl tRNA synthetase 2 (mitochondrial)
3	gene	99.14460	99.14895	positive	MGI_C57BL6J_5663161	Gm43024	ENSEMBL:ENSMUSG00000105472	MGI:5663161	lncRNA gene	predicted gene 43024
3	pseudogene	99.18075	99.18139	negative	MGI_C57BL6J_5011167	Gm18982	NCBI_Gene:100418070,ENSEMBL:ENSMUSG00000105798	MGI:5011167	pseudogene	predicted gene, 18982
3	gene	99.19934	99.19945	negative	MGI_C57BL6J_5531126	Mir6481	miRBase:MI0022051,NCBI_Gene:102465230,ENSEMBL:ENSMUSG00000098918	MGI:5531126	miRNA gene	microRNA 6481
3	gene	99.20642	99.20988	positive	MGI_C57BL6J_5662854	Gm42717	ENSEMBL:ENSMUSG00000106197	MGI:5662854	lncRNA gene	predicted gene 42717
3	gene	99.23691	99.23912	positive	MGI_C57BL6J_5621353	Gm38468	NCBI_Gene:102634827	MGI:5621353	lncRNA gene	predicted gene, 38468
3	gene	99.24035	99.35426	positive	MGI_C57BL6J_1277234	Tbx15	NCBI_Gene:21384,ENSEMBL:ENSMUSG00000027868	MGI:1277234	protein coding gene	T-box 15
3	gene	99.24066	99.24189	negative	MGI_C57BL6J_5826454	Gm46817	NCBI_Gene:108168887	MGI:5826454	lncRNA gene	predicted gene, 46817
3	gene	99.25470	99.26129	negative	MGI_C57BL6J_5663257	Gm43120	ENSEMBL:ENSMUSG00000105689	MGI:5663257	lncRNA gene	predicted gene 43120
3	pseudogene	99.46359	99.46382	negative	MGI_C57BL6J_3650542	Gm12449	ENSEMBL:ENSMUSG00000081183	MGI:3650542	pseudogene	predicted gene 12449
3	pseudogene	99.50037	99.50261	positive	MGI_C57BL6J_96905	M6pr-ps	NCBI_Gene:17114,ENSEMBL:ENSMUSG00000080832	MGI:96905	pseudogene	mannose-6-phosphate receptor, pseudogene
3	pseudogene	99.54441	99.54506	negative	MGI_C57BL6J_3651230	Gm12448	ENSEMBL:ENSMUSG00000083938	MGI:3651230	pseudogene	predicted gene 12448
3	gene	99.70774	99.70785	negative	MGI_C57BL6J_5452282	Gm22505	ENSEMBL:ENSMUSG00000064890	MGI:5452282	snRNA gene	predicted gene, 22505
3	gene	99.88541	100.14332	positive	MGI_C57BL6J_1921612	Spag17	NCBI_Gene:74362,ENSEMBL:ENSMUSG00000027867	MGI:1921612	protein coding gene	sperm associated antigen 17
3	pseudogene	100.00832	100.00873	positive	MGI_C57BL6J_3649699	Rpl36-ps7	NCBI_Gene:623045,ENSEMBL:ENSMUSG00000080754	MGI:3649699	pseudogene	ribosomal protein L36, pseudogene 7
3	pseudogene	100.07848	100.07864	negative	MGI_C57BL6J_3650850	Tra2b-ps	ENSEMBL:ENSMUSG00000082763	MGI:3650850	pseudogene	transformer 2 beta, pseudogene
3	gene	100.10068	100.10689	negative	MGI_C57BL6J_2444368	Spag17os	ENSEMBL:ENSMUSG00000085244	MGI:2444368	antisense lncRNA gene	sperm associated antigen 17, opposite strand
3	gene	100.13818	100.16241	negative	MGI_C57BL6J_2443143	Wdr3	NCBI_Gene:269470,ENSEMBL:ENSMUSG00000033285	MGI:2443143	protein coding gene	WD repeat domain 3
3	gene	100.16238	100.20699	positive	MGI_C57BL6J_1338001	Gdap2	NCBI_Gene:14547,ENSEMBL:ENSMUSG00000027865	MGI:1338001	protein coding gene	ganglioside-induced differentiation-associated-protein 2
3	gene	100.30329	100.30336	positive	MGI_C57BL6J_5455579	Gm25802	ENSEMBL:ENSMUSG00000064573	MGI:5455579	snoRNA gene	predicted gene, 25802
3	pseudogene	100.41355	100.41478	positive	MGI_C57BL6J_3650645	Gm12464	NCBI_Gene:195514,ENSEMBL:ENSMUSG00000081440	MGI:3650645	pseudogene	predicted gene 12464
3	gene	100.41808	100.42242	positive	MGI_C57BL6J_5591630	Gm32471	NCBI_Gene:102635032	MGI:5591630	lncRNA gene	predicted gene, 32471
3	gene	100.42641	100.43775	positive	MGI_C57BL6J_1921056	4930406D18Rik	NCBI_Gene:73806,ENSEMBL:ENSMUSG00000086923	MGI:1921056	lncRNA gene	RIKEN cDNA 4930406D18 gene
3	gene	100.43783	100.43914	positive	MGI_C57BL6J_5663258	Gm43121	ENSEMBL:ENSMUSG00000106639	MGI:5663258	lncRNA gene	predicted gene 43121
3	gene	100.45163	100.48932	negative	MGI_C57BL6J_1921895	Tent5c	NCBI_Gene:74645,ENSEMBL:ENSMUSG00000044468	MGI:1921895	protein coding gene	terminal nucleotidyltransferase 5C
3	gene	100.45181	100.45958	negative	MGI_C57BL6J_5621415	Gm38530	NCBI_Gene:102641070	MGI:5621415	lncRNA gene	predicted gene, 38530
3	gene	100.48932	100.53121	positive	MGI_C57BL6J_3649378	Gm12474	NCBI_Gene:545557,ENSEMBL:ENSMUSG00000053957	MGI:3649378	lncRNA gene	predicted gene 12474
3	gene	100.49536	100.54135	negative	MGI_C57BL6J_5622991	Gm40106	NCBI_Gene:105244512	MGI:5622991	lncRNA gene	predicted gene, 40106
3	gene	100.49743	100.50012	positive	MGI_C57BL6J_5663005	Gm42868	ENSEMBL:ENSMUSG00000104943	MGI:5663005	lncRNA gene	predicted gene 42868
3	gene	100.56220	100.68550	negative	MGI_C57BL6J_104676	Man1a2	NCBI_Gene:17156,ENSEMBL:ENSMUSG00000008763	MGI:104676	protein coding gene	mannosidase, alpha, class 1A, member 2
3	gene	100.58231	100.58753	negative	MGI_C57BL6J_5663603	Gm43466	ENSEMBL:ENSMUSG00000105824	MGI:5663603	lncRNA gene	predicted gene 43466
3	gene	100.62490	100.62702	negative	MGI_C57BL6J_5663006	Gm42869	ENSEMBL:ENSMUSG00000105137	MGI:5663006	lncRNA gene	predicted gene 42869
3	gene	100.62730	100.63094	negative	MGI_C57BL6J_5663599	Gm43462	ENSEMBL:ENSMUSG00000105561	MGI:5663599	lncRNA gene	predicted gene 43462
3	gene	100.67829	100.68009	negative	MGI_C57BL6J_5663600	Gm43463	ENSEMBL:ENSMUSG00000106184	MGI:5663600	lncRNA gene	predicted gene 43463
3	pseudogene	100.68027	100.68055	positive	MGI_C57BL6J_3651876	Gm12485	ENSEMBL:ENSMUSG00000083842	MGI:3651876	pseudogene	predicted gene 12485
3	gene	100.69271	100.70008	positive	MGI_C57BL6J_5663601	Gm43464	ENSEMBL:ENSMUSG00000106227	MGI:5663601	lncRNA gene	predicted gene 43464
3	gene	100.73845	100.73871	negative	MGI_C57BL6J_5453242	Gm23465	ENSEMBL:ENSMUSG00000087759	MGI:5453242	unclassified non-coding RNA gene	predicted gene, 23465
3	gene	100.81154	100.81775	negative	MGI_C57BL6J_5622992	Gm40107	NCBI_Gene:105244513	MGI:5622992	lncRNA gene	predicted gene, 40107
3	gene	100.82040	100.82702	negative	MGI_C57BL6J_5591879	Gm32720	NCBI_Gene:102635361	MGI:5591879	lncRNA gene	predicted gene, 32720
3	gene	100.82546	100.89692	positive	MGI_C57BL6J_3039619	Vtcn1	NCBI_Gene:242122,ENSEMBL:ENSMUSG00000051076	MGI:3039619	protein coding gene	V-set domain containing T cell activation inhibitor 1
3	gene	100.90894	100.91522	positive	MGI_C57BL6J_5622993	Gm40108	NCBI_Gene:105244514	MGI:5622993	lncRNA gene	predicted gene, 40108
3	gene	100.92220	100.93693	positive	MGI_C57BL6J_1918187	Trim45	NCBI_Gene:229644,ENSEMBL:ENSMUSG00000033233	MGI:1918187	protein coding gene	tripartite motif-containing 45
3	gene	100.93886	100.96972	negative	MGI_C57BL6J_1921294	Ttf2	NCBI_Gene:74044,ENSEMBL:ENSMUSG00000033222	MGI:1921294	protein coding gene	transcription termination factor, RNA polymerase II
3	pseudogene	100.95544	100.95594	positive	MGI_C57BL6J_3650947	Gm12488	ENSEMBL:ENSMUSG00000082000	MGI:3650947	pseudogene	predicted gene 12488
3	gene	100.99353	101.02956	negative	MGI_C57BL6J_2685862	Cd101	NCBI_Gene:630146,ENSEMBL:ENSMUSG00000086564	MGI:2685862	protein coding gene	CD101 antigen
3	gene	101.04023	101.11075	negative	MGI_C57BL6J_1277114	Ptgfrn	NCBI_Gene:19221,ENSEMBL:ENSMUSG00000027864	MGI:1277114	protein coding gene	prostaglandin F2 receptor negative regulator
3	gene	101.08459	101.08739	negative	MGI_C57BL6J_5663602	Gm43465	ENSEMBL:ENSMUSG00000105717	MGI:5663602	lncRNA gene	predicted gene 43465
3	pseudogene	101.20666	101.20748	negative	MGI_C57BL6J_3650949	Gm12486	NCBI_Gene:668578,ENSEMBL:ENSMUSG00000082415	MGI:3650949	pseudogene	predicted gene 12486
3	pseudogene	101.23346	101.23412	positive	MGI_C57BL6J_107797	Tpt1-ps1	NCBI_Gene:668583,ENSEMBL:ENSMUSG00000083546	MGI:107797	pseudogene	tumor protein, translationally-controlled, pseudogene 1
3	pseudogene	101.26092	101.26148	positive	MGI_C57BL6J_3651827	Gm12490	NCBI_Gene:669017,ENSEMBL:ENSMUSG00000081569	MGI:3651827	pseudogene	predicted gene 12490
3	gene	101.27590	101.28794	negative	MGI_C57BL6J_88320	Cd2	NCBI_Gene:12481,ENSEMBL:ENSMUSG00000027863	MGI:88320	protein coding gene	CD2 antigen
3	gene	101.29100	101.29661	negative	MGI_C57BL6J_5591962	Gm32803	NCBI_Gene:102635474	MGI:5591962	lncRNA gene	predicted gene, 32803
3	pseudogene	101.30643	101.30719	negative	MGI_C57BL6J_3641762	Gm10355	NCBI_Gene:100043490,ENSEMBL:ENSMUSG00000072381	MGI:3641762	pseudogene	predicted gene 10355
3	pseudogene	101.31085	101.31128	positive	MGI_C57BL6J_5663604	Gm43467	ENSEMBL:ENSMUSG00000106316	MGI:5663604	pseudogene	predicted gene 43467
3	gene	101.31591	101.32129	positive	MGI_C57BL6J_5592007	Gm32848	NCBI_Gene:102635540	MGI:5592007	lncRNA gene	predicted gene, 32848
3	gene	101.33963	101.35461	negative	MGI_C57BL6J_5592059	Gm32900	NCBI_Gene:102635610	MGI:5592059	lncRNA gene	predicted gene, 32900
3	gene	101.37708	101.46306	positive	MGI_C57BL6J_1926158	Igsf3	NCBI_Gene:78908,ENSEMBL:ENSMUSG00000042035	MGI:1926158	protein coding gene	immunoglobulin superfamily, member 3
3	gene	101.40779	101.41000	positive	MGI_C57BL6J_5663076	Gm42939	ENSEMBL:ENSMUSG00000104639	MGI:5663076	lncRNA gene	predicted gene 42939
3	gene	101.41154	101.41261	positive	MGI_C57BL6J_5663075	Gm42938	ENSEMBL:ENSMUSG00000105611	MGI:5663075	lncRNA gene	predicted gene 42938
3	gene	101.42462	101.42694	negative	MGI_C57BL6J_5662675	Gm42538	ENSEMBL:ENSMUSG00000106137	MGI:5662675	lncRNA gene	predicted gene 42538
3	gene	101.50193	101.50785	negative	MGI_C57BL6J_5622994	Gm40109	NCBI_Gene:105244515	MGI:5622994	lncRNA gene	predicted gene, 40109
3	gene	101.51156	101.53625	negative	MGI_C57BL6J_5592321	Gm33162	NCBI_Gene:102635957	MGI:5592321	lncRNA gene	predicted gene, 33162
3	gene	101.57622	101.60471	negative	MGI_C57BL6J_88105	Atp1a1	NCBI_Gene:11928,ENSEMBL:ENSMUSG00000033161	MGI:88105	protein coding gene	ATPase, Na+/K+ transporting, alpha 1 polypeptide
3	gene	101.58030	101.58106	negative	MGI_C57BL6J_5663074	Gm42937	ENSEMBL:ENSMUSG00000104737	MGI:5663074	lncRNA gene	predicted gene 42937
3	gene	101.59581	101.59713	negative	MGI_C57BL6J_5663078	Gm42941	ENSEMBL:ENSMUSG00000104693	MGI:5663078	lncRNA gene	predicted gene 42941
3	gene	101.63405	101.65080	negative	MGI_C57BL6J_5592374	Gm33215	NCBI_Gene:102636027	MGI:5592374	lncRNA gene	predicted gene, 33215
3	gene	101.65909	101.66730	negative	MGI_C57BL6J_5592424	Gm33265	NCBI_Gene:102636098	MGI:5592424	lncRNA gene	predicted gene, 33265
3	gene	101.69179	101.69963	positive	MGI_C57BL6J_5663272	Gm43135	ENSEMBL:ENSMUSG00000106070	MGI:5663272	lncRNA gene	predicted gene 43135
3	gene	101.72714	101.73754	negative	MGI_C57BL6J_5592468	Gm33309	NCBI_Gene:102636166	MGI:5592468	lncRNA gene	predicted gene, 33309
3	gene	101.74812	101.75001	positive	MGI_C57BL6J_5663271	Gm43134	ENSEMBL:ENSMUSG00000105642	MGI:5663271	lncRNA gene	predicted gene 43134
3	gene	101.81308	101.84896	negative	MGI_C57BL6J_2446273	Mab21l3	NCBI_Gene:242125,ENSEMBL:ENSMUSG00000044313	MGI:2446273	protein coding gene	mab-21-like 3
3	gene	101.82688	101.83499	positive	MGI_C57BL6J_5592540	Gm33381	NCBI_Gene:102636267	MGI:5592540	lncRNA gene	predicted gene, 33381
3	gene	101.85444	101.92454	negative	MGI_C57BL6J_3607704	Slc22a15	NCBI_Gene:242126,ENSEMBL:ENSMUSG00000033147	MGI:3607704	protein coding gene	solute carrier family 22 (organic anion/cation transporter), member 15
3	gene	102.01008	102.01549	positive	MGI_C57BL6J_97324	Nhlh2	NCBI_Gene:18072,ENSEMBL:ENSMUSG00000048540	MGI:97324	protein coding gene	nescient helix loop helix 2
3	pseudogene	102.06805	102.06833	positive	MGI_C57BL6J_5663380	Gm43243	ENSEMBL:ENSMUSG00000104930	MGI:5663380	pseudogene	predicted gene 43243
3	pseudogene	102.07445	102.07515	positive	MGI_C57BL6J_5011079	Gm18894	NCBI_Gene:100417909,ENSEMBL:ENSMUSG00000105346	MGI:5011079	pseudogene	predicted gene, 18894
3	gene	102.08642	102.14651	positive	MGI_C57BL6J_1309469	Casq2	NCBI_Gene:12373,ENSEMBL:ENSMUSG00000027861	MGI:1309469	protein coding gene	calsequestrin 2
3	gene	102.12994	102.13122	positive	MGI_C57BL6J_5663381	Gm43244	ENSEMBL:ENSMUSG00000105342	MGI:5663381	lncRNA gene	predicted gene 43244
3	gene	102.13461	102.13750	positive	MGI_C57BL6J_1921598	4632404M16Rik	ENSEMBL:ENSMUSG00000106296	MGI:1921598	lncRNA gene	RIKEN cDNA 4632404M16 gene
3	gene	102.15358	102.20502	negative	MGI_C57BL6J_2159344	Vangl1	NCBI_Gene:229658,ENSEMBL:ENSMUSG00000027860	MGI:2159344	protein coding gene	VANGL planar cell polarity 1
3	gene	102.20109	102.22870	positive	MGI_C57BL6J_3802143	Gm16160	NCBI_Gene:102636385,ENSEMBL:ENSMUSG00000089916	MGI:3802143	lncRNA gene	predicted gene 16160
3	gene	102.24967	102.25026	positive	MGI_C57BL6J_5663378	Gm43241	ENSEMBL:ENSMUSG00000105151	MGI:5663378	lncRNA gene	predicted gene 43241
3	gene	102.26241	102.44513	positive	MGI_C57BL6J_2443043	A230001M10Rik	NCBI_Gene:319951,ENSEMBL:ENSMUSG00000105891	MGI:2443043	lncRNA gene	RIKEN cDNA A230001M10 gene
3	gene	102.36916	102.37094	positive	MGI_C57BL6J_5663379	Gm43242	ENSEMBL:ENSMUSG00000105966	MGI:5663379	lncRNA gene	predicted gene 43242
3	gene	102.37135	102.37313	negative	MGI_C57BL6J_5622995	Gm40110	NCBI_Gene:105244516	MGI:5622995	lncRNA gene	predicted gene, 40110
3	gene	102.37709	102.38353	negative	MGI_C57BL6J_5592838	Gm33679	NCBI_Gene:102636676	MGI:5592838	lncRNA gene	predicted gene, 33679
3	pseudogene	102.38954	102.39001	negative	MGI_C57BL6J_5663382	Gm43245	ENSEMBL:ENSMUSG00000106459	MGI:5663382	pseudogene	predicted gene 43245
3	gene	102.46992	102.52101	positive	MGI_C57BL6J_97321	Ngf	NCBI_Gene:18049,ENSEMBL:ENSMUSG00000027859	MGI:97321	protein coding gene	nerve growth factor
3	gene	102.49134	102.49425	positive	MGI_C57BL6J_5662816	Gm42679	ENSEMBL:ENSMUSG00000106121	MGI:5662816	lncRNA gene	predicted gene 42679
3	gene	102.50086	102.50672	negative	MGI_C57BL6J_5826455	Gm46818	NCBI_Gene:108168888	MGI:5826455	lncRNA gene	predicted gene, 46818
3	gene	102.59937	102.60159	positive	MGI_C57BL6J_5662815	Gm42678	ENSEMBL:ENSMUSG00000104619	MGI:5662815	lncRNA gene	predicted gene 42678
3	pseudogene	102.68578	102.68688	negative	MGI_C57BL6J_5011387	Gm19202	NCBI_Gene:100418422,ENSEMBL:ENSMUSG00000104685	MGI:5011387	pseudogene	predicted gene, 19202
3	pseudogene	102.68673	102.68686	negative	MGI_C57BL6J_5662814	Gm42677	ENSEMBL:ENSMUSG00000105498	MGI:5662814	pseudogene	predicted gene 42677
3	gene	102.69412	102.69685	positive	MGI_C57BL6J_5622997	Gm40112	NCBI_Gene:105244518	MGI:5622997	lncRNA gene	predicted gene, 40112
3	gene	102.71425	102.71552	positive	MGI_C57BL6J_5662819	Gm42682	ENSEMBL:ENSMUSG00000105570	MGI:5662819	lncRNA gene	predicted gene 42682
3	gene	102.72023	102.73542	negative	MGI_C57BL6J_1925741	Tspan2os	NCBI_Gene:78491,ENSEMBL:ENSMUSG00000086745	MGI:1925741	antisense lncRNA gene	tetraspanin 2, opposite strand
3	gene	102.73453	102.80151	positive	MGI_C57BL6J_1917997	Tspan2	NCBI_Gene:70747,ENSEMBL:ENSMUSG00000027858	MGI:1917997	protein coding gene	tetraspanin 2
3	gene	102.77546	102.78908	negative	MGI_C57BL6J_98848	Tshb	NCBI_Gene:22094,ENSEMBL:ENSMUSG00000027857	MGI:98848	protein coding gene	thyroid stimulating hormone, beta subunit
3	gene	102.78318	102.78479	negative	MGI_C57BL6J_5662818	Gm42681	ENSEMBL:ENSMUSG00000105855	MGI:5662818	lncRNA gene	predicted gene 42681
3	gene	102.81850	102.93610	negative	MGI_C57BL6J_105931	Sycp1	NCBI_Gene:20957,ENSEMBL:ENSMUSG00000027855	MGI:105931	protein coding gene	synaptonemal complex protein 1
3	pseudogene	102.83049	102.83082	positive	MGI_C57BL6J_5662953	Gm42816	ENSEMBL:ENSMUSG00000105672	MGI:5662953	pseudogene	predicted gene 42816
3	pseudogene	102.83159	102.83200	positive	MGI_C57BL6J_5593111	Gm33952	ENSEMBL:ENSMUSG00000106545	MGI:5593111	pseudogene	predicted gene, 33952
3	pseudogene	102.88066	102.88110	positive	MGI_C57BL6J_5593025	Gm33866	NCBI_Gene:102636928,ENSEMBL:ENSMUSG00000105938	MGI:5593025	pseudogene	predicted gene, 33866
3	gene	102.93966	102.96429	negative	MGI_C57BL6J_3026618	Nr1h5	NCBI_Gene:381463,ENSEMBL:ENSMUSG00000048938	MGI:3026618	protein coding gene	nuclear receptor subfamily 1, group H, member 5
3	gene	102.95195	102.95211	negative	MGI_C57BL6J_5452603	Gm22826	ENSEMBL:ENSMUSG00000065708	MGI:5452603	snRNA gene	predicted gene, 22826
3	gene	102.99571	103.00846	positive	MGI_C57BL6J_1913891	Sike1	NCBI_Gene:66641,ENSEMBL:ENSMUSG00000027854	MGI:1913891	protein coding gene	suppressor of IKBKE 1
3	gene	103.02043	103.05819	positive	MGI_C57BL6J_92356	Csde1	NCBI_Gene:229663,ENSEMBL:ENSMUSG00000068823	MGI:92356	protein coding gene	cold shock domain containing E1, RNA binding
3	gene	103.05828	103.06791	positive	MGI_C57BL6J_97376	Nras	NCBI_Gene:18176,ENSEMBL:ENSMUSG00000027852	MGI:97376	protein coding gene	neuroblastoma ras oncogene
3	gene	103.07117	103.07249	positive	MGI_C57BL6J_5663199	Gm43062	ENSEMBL:ENSMUSG00000104671	MGI:5663199	lncRNA gene	predicted gene 43062
3	gene	103.07357	103.09972	positive	MGI_C57BL6J_88015	Ampd1	NCBI_Gene:229665,ENSEMBL:ENSMUSG00000070385	MGI:88015	protein coding gene	adenosine monophosphate deaminase 1
3	gene	103.08288	103.08317	positive	MGI_C57BL6J_5453597	Gm23820	ENSEMBL:ENSMUSG00000089075	MGI:5453597	unclassified non-coding RNA gene	predicted gene, 23820
3	gene	103.09675	103.09783	positive	MGI_C57BL6J_5663200	Gm43063	ENSEMBL:ENSMUSG00000105731	MGI:5663200	lncRNA gene	predicted gene 43063
3	gene	103.10260	103.16977	positive	MGI_C57BL6J_3036254	Dennd2c	NCBI_Gene:329727,ENSEMBL:ENSMUSG00000007379	MGI:3036254	protein coding gene	DENN/MADD domain containing 2C
3	gene	103.17166	103.17917	positive	MGI_C57BL6J_1915433	Bcas2	NCBI_Gene:68183,ENSEMBL:ENSMUSG00000005687	MGI:1915433	protein coding gene	breast carcinoma amplified sequence 2
3	pseudogene	103.17969	103.18044	negative	MGI_C57BL6J_5504139	Gm27024	ENSEMBL:ENSMUSG00000098153	MGI:5504139	pseudogene	predicted gene, 27024
3	gene	103.18929	103.19672	negative	MGI_C57BL6J_5622998	Gm40113	NCBI_Gene:105244519	MGI:5622998	lncRNA gene	predicted gene, 40113
3	pseudogene	103.19823	103.19898	negative	MGI_C57BL6J_1917250	2410024N13Rik	ENSEMBL:ENSMUSG00000054379	MGI:1917250	pseudogene	RIKEN cDNA 2410024N13 gene
3	pseudogene	103.24698	103.24726	negative	MGI_C57BL6J_5663197	Gm43060	ENSEMBL:ENSMUSG00000104976	MGI:5663197	pseudogene	predicted gene 43060
3	gene	103.27929	103.35877	positive	MGI_C57BL6J_2137357	Trim33	NCBI_Gene:94093,ENSEMBL:ENSMUSG00000033014	MGI:2137357	protein coding gene	tripartite motif-containing 33
3	gene	103.33214	103.33438	positive	MGI_C57BL6J_5663198	Gm43061	ENSEMBL:ENSMUSG00000104925	MGI:5663198	lncRNA gene	predicted gene 43061
3	gene	103.39293	103.39303	positive	MGI_C57BL6J_5454786	Gm25009	ENSEMBL:ENSMUSG00000089029	MGI:5454786	snoRNA gene	predicted gene, 25009
3	gene	103.42744	103.42754	positive	MGI_C57BL6J_5455646	Gm25869	ENSEMBL:ENSMUSG00000065789	MGI:5455646	snRNA gene	predicted gene, 25869
3	gene	103.44570	103.44580	negative	MGI_C57BL6J_5454976	Gm25199	ENSEMBL:ENSMUSG00000065029	MGI:5454976	snRNA gene	predicted gene, 25199
3	gene	103.50146	103.55137	positive	MGI_C57BL6J_5593208	Gm34049	NCBI_Gene:102637166	MGI:5593208	lncRNA gene	predicted gene, 34049
3	gene	103.57523	103.64557	positive	MGI_C57BL6J_1859544	Syt6	NCBI_Gene:54524,ENSEMBL:ENSMUSG00000027849	MGI:1859544	protein coding gene	synaptotagmin VI
3	gene	103.60194	103.60320	positive	MGI_C57BL6J_5663203	Gm43066	ENSEMBL:ENSMUSG00000104764	MGI:5663203	lncRNA gene	predicted gene 43066
3	pseudogene	103.64395	103.64607	negative	MGI_C57BL6J_3615624	Atg4a-ps	NCBI_Gene:102926,ENSEMBL:ENSMUSG00000087119	MGI:3615624	pseudogene	autophagy related 4A, pseudogene
3	gene	103.66654	103.66663	negative	MGI_C57BL6J_5455102	Gm25325	ENSEMBL:ENSMUSG00000084508	MGI:5455102	miRNA gene	predicted gene, 25325
3	pseudogene	103.69480	103.69520	positive	MGI_C57BL6J_3802051	Gm15986	ENSEMBL:ENSMUSG00000081910	MGI:3802051	pseudogene	predicted gene 15986
3	gene	103.72222	103.73800	negative	MGI_C57BL6J_1914877	Olfml3	NCBI_Gene:99543,ENSEMBL:ENSMUSG00000027848	MGI:1914877	protein coding gene	olfactomedin-like 3
3	gene	103.73167	103.73255	negative	MGI_C57BL6J_2670987	BC027582	NA	NA	unclassified non-coding RNA gene	cDNA sequence BC027582
3	gene	103.73937	103.74638	positive	MGI_C57BL6J_3779175	Gm10964	ENSEMBL:ENSMUSG00000078620	MGI:3779175	protein coding gene	predicted gene 10964
3	gene	103.73981	103.79189	negative	MGI_C57BL6J_1314873	Hipk1	NCBI_Gene:15257,ENSEMBL:ENSMUSG00000008730	MGI:1314873	protein coding gene	homeodomain interacting protein kinase 1
3	gene	103.76569	103.76712	negative	MGI_C57BL6J_5663286	Gm43149	ENSEMBL:ENSMUSG00000105229	MGI:5663286	lncRNA gene	predicted gene 43149
3	gene	103.77070	103.78940	positive	MGI_C57BL6J_3801744	Gm15886	NCBI_Gene:102637354,ENSEMBL:ENSMUSG00000085754	MGI:3801744	lncRNA gene	predicted gene 15886
3	gene	103.78191	103.78298	negative	MGI_C57BL6J_5663524	Gm43387	ENSEMBL:ENSMUSG00000104874	MGI:5663524	lncRNA gene	predicted gene 43387
3	gene	103.80061	103.80944	negative	MGI_C57BL6J_2156057	Dclre1b	NCBI_Gene:140917,ENSEMBL:ENSMUSG00000027845	MGI:2156057	protein coding gene	DNA cross-link repair 1B
3	gene	103.80313	103.80844	positive	MGI_C57BL6J_3705197	Gm15471	NCBI_Gene:100503157,ENSEMBL:ENSMUSG00000084997	MGI:3705197	lncRNA gene	predicted gene 15471
3	gene	103.80952	103.82202	positive	MGI_C57BL6J_1337130	Ap4b1	NCBI_Gene:67489,ENSEMBL:ENSMUSG00000032952	MGI:1337130	protein coding gene	adaptor-related protein complex AP-4, beta 1
3	gene	103.80957	103.83865	positive	MGI_C57BL6J_5663201	Gm43064	ENSEMBL:ENSMUSG00000105053	MGI:5663201	protein coding gene	predicted gene 43064
3	gene	103.83104	103.85462	positive	MGI_C57BL6J_2685412	Bcl2l15	NCBI_Gene:229672,ENSEMBL:ENSMUSG00000044165	MGI:2685412	protein coding gene	BCLl2-like 15
3	gene	103.85680	103.91225	positive	MGI_C57BL6J_107170	Ptpn22	NCBI_Gene:19260,ENSEMBL:ENSMUSG00000027843	MGI:107170	protein coding gene	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)
3	gene	103.86317	103.86442	positive	MGI_C57BL6J_3707328	Gm15472	ENSEMBL:ENSMUSG00000084760	MGI:3707328	lncRNA gene	predicted gene 15472
3	gene	103.86471	103.86680	positive	MGI_C57BL6J_5663202	Gm43065	ENSEMBL:ENSMUSG00000105986	MGI:5663202	lncRNA gene	predicted gene 43065
3	pseudogene	103.90250	103.90296	negative	MGI_C57BL6J_3783049	Gm15602	ENSEMBL:ENSMUSG00000083630	MGI:3783049	pseudogene	predicted gene 15602
3	gene	103.91407	103.96664	positive	MGI_C57BL6J_2444993	Rsbn1	NCBI_Gene:229675,ENSEMBL:ENSMUSG00000044098	MGI:2444993	protein coding gene	rosbin, round spermatid basic protein 1
3	gene	103.96454	103.96858	negative	MGI_C57BL6J_3698050	Phtf1os	NCBI_Gene:100125931,ENSEMBL:ENSMUSG00000089998	MGI:3698050	antisense lncRNA gene	putative homeodomain transcription factor 1, opposite strand
3	gene	103.96811	104.02460	positive	MGI_C57BL6J_1332671	Phtf1	NCBI_Gene:18685,ENSEMBL:ENSMUSG00000058388	MGI:1332671	protein coding gene	putative homeodomain transcription factor 1
3	gene	104.01326	104.22041	negative	MGI_C57BL6J_1923484	Magi3	NCBI_Gene:99470,ENSEMBL:ENSMUSG00000052539	MGI:1923484	protein coding gene	membrane associated guanylate kinase, WW and PDZ domain containing 3
3	gene	104.05700	104.05814	negative	MGI_C57BL6J_5662833	Gm42696	ENSEMBL:ENSMUSG00000104721	MGI:5662833	lncRNA gene	predicted gene 42696
3	gene	104.07843	104.07950	negative	MGI_C57BL6J_1925995	9530097N15Rik	ENSEMBL:ENSMUSG00000106371	MGI:1925995	lncRNA gene	RIKEN cDNA 9530097N15 gene
3	gene	104.09238	104.09248	positive	MGI_C57BL6J_5453607	Gm23830	ENSEMBL:ENSMUSG00000088016	MGI:5453607	snRNA gene	predicted gene, 23830
3	gene	104.09544	104.09788	negative	MGI_C57BL6J_5662837	Gm42700	ENSEMBL:ENSMUSG00000105148	MGI:5662837	lncRNA gene	predicted gene 42700
3	gene	104.11404	104.11570	negative	MGI_C57BL6J_5662836	Gm42699	ENSEMBL:ENSMUSG00000105083	MGI:5662836	lncRNA gene	predicted gene 42699
3	pseudogene	104.12942	104.13026	positive	MGI_C57BL6J_5010141	Gm17956	NCBI_Gene:100416171,ENSEMBL:ENSMUSG00000105793	MGI:5010141	pseudogene	predicted gene, 17956
3	gene	104.13578	104.14000	negative	MGI_C57BL6J_5662839	Gm42702	ENSEMBL:ENSMUSG00000106443	MGI:5662839	lncRNA gene	predicted gene 42702
3	gene	104.14420	104.14585	negative	MGI_C57BL6J_5662838	Gm42701	ENSEMBL:ENSMUSG00000104583	MGI:5662838	lncRNA gene	predicted gene 42701
3	gene	104.14976	104.15171	negative	MGI_C57BL6J_5663395	Gm43258	ENSEMBL:ENSMUSG00000105846	MGI:5663395	lncRNA gene	predicted gene 43258
3	gene	104.15553	104.15625	negative	MGI_C57BL6J_1924718	C030032O16Rik	ENSEMBL:ENSMUSG00000106063	MGI:1924718	lncRNA gene	RIKEN cDNA C030032O16 gene
3	gene	104.16392	104.16720	negative	MGI_C57BL6J_5663396	Gm43259	ENSEMBL:ENSMUSG00000106432	MGI:5663396	lncRNA gene	predicted gene 43259
3	gene	104.18061	104.18304	negative	MGI_C57BL6J_5663397	Gm43260	ENSEMBL:ENSMUSG00000105933	MGI:5663397	lncRNA gene	predicted gene 43260
3	gene	104.18710	104.19019	negative	MGI_C57BL6J_5663393	Gm43256	ENSEMBL:ENSMUSG00000105818	MGI:5663393	lncRNA gene	predicted gene 43256
3	gene	104.20111	104.20122	positive	MGI_C57BL6J_5452854	Gm23077	ENSEMBL:ENSMUSG00000088479	MGI:5452854	snoRNA gene	predicted gene, 23077
3	gene	104.22088	104.22208	positive	MGI_C57BL6J_1917091	2010002M09Rik	NA	NA	unclassified gene	RIKEN cDNA 2010002M09 gene
3	gene	104.35063	104.36661	negative	MGI_C57BL6J_3648205	Gm5546	NCBI_Gene:433634,ENSEMBL:ENSMUSG00000022187	MGI:3648205	lncRNA gene	predicted gene 5546
3	gene	104.39642	104.51192	negative	MGI_C57BL6J_2443718	Lrig2	NCBI_Gene:269473,ENSEMBL:ENSMUSG00000032913	MGI:2443718	protein coding gene	leucine-rich repeats and immunoglobulin-like domains 2
3	gene	104.40916	104.41754	positive	MGI_C57BL6J_5621297	Gm38412	NCBI_Gene:329730,ENSEMBL:ENSMUSG00000104768	MGI:5621297	lncRNA gene	predicted gene, 38412
3	pseudogene	104.41666	104.41833	negative	MGI_C57BL6J_3643077	Gm9273	NCBI_Gene:668622,ENSEMBL:ENSMUSG00000106453	MGI:3643077	pseudogene	predicted gene 9273
3	gene	104.47066	104.47673	negative	MGI_C57BL6J_5663833	Gm43696	ENSEMBL:ENSMUSG00000105304	MGI:5663833	lncRNA gene	predicted gene 43696
3	gene	104.49932	104.50161	negative	MGI_C57BL6J_3026943	A530041M06Rik	ENSEMBL:ENSMUSG00000104973	MGI:3026943	lncRNA gene	RIKEN cDNA A530041M06 gene
3	gene	104.51010	104.51131	negative	MGI_C57BL6J_1922357	4930509H03Rik	ENSEMBL:ENSMUSG00000105659	MGI:1922357	lncRNA gene	RIKEN cDNA 4930509H03 gene
3	gene	104.55539	104.57186	positive	MGI_C57BL6J_5593649	Gm34490	NCBI_Gene:102637760	MGI:5593649	lncRNA gene	predicted gene, 34490
3	gene	104.60116	104.60124	negative	MGI_C57BL6J_5455868	Gm26091	ENSEMBL:ENSMUSG00000084653	MGI:5455868	snRNA gene	predicted gene, 26091
3	pseudogene	104.63432	104.63466	negative	MGI_C57BL6J_5663719	Gm43582	ENSEMBL:ENSMUSG00000106565	MGI:5663719	pseudogene	predicted gene 43582
3	gene	104.63866	104.65846	positive	MGI_C57BL6J_106013	Slc16a1	NCBI_Gene:20501,ENSEMBL:ENSMUSG00000032902	MGI:106013	protein coding gene	solute carrier family 16 (monocarboxylic acid transporters), member 1
3	gene	104.64299	104.64586	positive	MGI_C57BL6J_5663718	Gm43581	ENSEMBL:ENSMUSG00000105199	MGI:5663718	lncRNA gene	predicted gene 43581
3	gene	104.64624	104.64764	positive	MGI_C57BL6J_5663722	Gm43585	ENSEMBL:ENSMUSG00000106287	MGI:5663722	lncRNA gene	predicted gene 43585
3	gene	104.66134	104.66414	negative	MGI_C57BL6J_5580267	Gm29561	ENSEMBL:ENSMUSG00000100188	MGI:5580267	lncRNA gene	predicted gene 29561
3	gene	104.66703	104.67001	negative	MGI_C57BL6J_5580266	Gm29560	ENSEMBL:ENSMUSG00000101641	MGI:5580266	protein coding gene	predicted gene 29560
3	gene	104.67755	104.68063	negative	MGI_C57BL6J_5593707	Gm34548	NCBI_Gene:102637841	MGI:5593707	lncRNA gene	predicted gene, 34548
3	gene	104.70087	104.70096	positive	MGI_C57BL6J_5454000	Gm24223	ENSEMBL:ENSMUSG00000089452	MGI:5454000	snRNA gene	predicted gene, 24223
3	gene	104.70659	104.71091	positive	MGI_C57BL6J_5580278	Gm29572	ENSEMBL:ENSMUSG00000100466	MGI:5580278	protein coding gene	predicted gene 29572
3	pseudogene	104.75237	104.75330	negative	MGI_C57BL6J_3644007	Gm6485	NCBI_Gene:624251,ENSEMBL:ENSMUSG00000089999	MGI:3644007	pseudogene	predicted gene 6485
3	gene	104.75312	104.77327	negative	MGI_C57BL6J_5663721	Gm43584	ENSEMBL:ENSMUSG00000105195	MGI:5663721	lncRNA gene	predicted gene 43584
3	gene	104.76740	104.78184	negative	MGI_C57BL6J_3046463	Tafa3	NCBI_Gene:329731,ENSEMBL:ENSMUSG00000055865	MGI:3046463	protein coding gene	TAFA chemokine like family member 3
3	gene	104.78106	104.78602	positive	MGI_C57BL6J_1919137	Ppm1j	NCBI_Gene:71887,ENSEMBL:ENSMUSG00000002228	MGI:1919137	protein coding gene	protein phosphatase 1J
3	gene	104.78838	104.79446	positive	MGI_C57BL6J_106028	Rhoc	NCBI_Gene:11853,ENSEMBL:ENSMUSG00000002233	MGI:106028	protein coding gene	ras homolog family member C
3	gene	104.79483	104.81860	negative	MGI_C57BL6J_97054	Mov10	NCBI_Gene:17454,ENSEMBL:ENSMUSG00000002227	MGI:97054	protein coding gene	Mov10 RISC complex RNA helicase
3	gene	104.82278	104.86450	negative	MGI_C57BL6J_106227	Capza1	NCBI_Gene:12340,ENSEMBL:ENSMUSG00000070372	MGI:106227	protein coding gene	capping protein (actin filament) muscle Z-line, alpha 1
3	gene	104.82633	104.82790	negative	MGI_C57BL6J_5662795	Gm42658	ENSEMBL:ENSMUSG00000106251	MGI:5662795	lncRNA gene	predicted gene 42658
3	gene	104.83643	104.83818	negative	MGI_C57BL6J_5662796	Gm42659	ENSEMBL:ENSMUSG00000105655	MGI:5662796	lncRNA gene	predicted gene 42659
3	gene	104.86401	104.93006	positive	MGI_C57BL6J_2386964	St7l	NCBI_Gene:229681,ENSEMBL:ENSMUSG00000045576	MGI:2386964	protein coding gene	suppression of tumorigenicity 7-like
3	pseudogene	104.91585	104.91620	negative	MGI_C57BL6J_3782710	Gm4525	NCBI_Gene:100043572,ENSEMBL:ENSMUSG00000106105	MGI:3782710	pseudogene	predicted gene 4525
3	gene	104.94481	104.96192	negative	MGI_C57BL6J_1261834	Wnt2b	NCBI_Gene:22414,ENSEMBL:ENSMUSG00000027840	MGI:1261834	protein coding gene	wingless-type MMTV integration site family, member 2B
3	gene	104.95744	104.95837	negative	MGI_C57BL6J_5663983	Gm43846	ENSEMBL:ENSMUSG00000105925	MGI:5663983	lncRNA gene	predicted gene 43846
3	gene	104.98160	104.98620	positive	MGI_C57BL6J_5826456	Gm46819	NCBI_Gene:108168890	MGI:5826456	lncRNA gene	predicted gene, 46819
3	gene	104.99218	105.00401	positive	MGI_C57BL6J_5623002	Gm40117	NCBI_Gene:105244523,ENSEMBL:ENSMUSG00000105355	MGI:5623002	lncRNA gene	predicted gene, 40117
3	gene	105.00191	105.05315	negative	MGI_C57BL6J_1933137	Cttnbp2nl	NCBI_Gene:80281,ENSEMBL:ENSMUSG00000062127	MGI:1933137	protein coding gene	CTTNBP2 N-terminal like
3	gene	105.00806	105.01776	positive	MGI_C57BL6J_5623001	Gm40116	NCBI_Gene:105244522	MGI:5623001	lncRNA gene	predicted gene, 40116
3	gene	105.06681	105.07883	positive	MGI_C57BL6J_1922519	4930564D02Rik	NCBI_Gene:75269,ENSEMBL:ENSMUSG00000051788	MGI:1922519	protein coding gene	RIKEN cDNA 4930564D02 gene
3	gene	105.09757	105.09835	positive	MGI_C57BL6J_5593940	Gm34781	NA	NA	protein coding gene	predicted gene%2c 34781
3	gene	105.10740	105.13497	positive	MGI_C57BL6J_5623003	Gm40118	NCBI_Gene:105244524	MGI:5623003	lncRNA gene	predicted gene, 40118
3	gene	105.35505	105.36835	positive	MGI_C57BL6J_5593996	Gm34837	NCBI_Gene:102638225	MGI:5593996	lncRNA gene	predicted gene, 34837
3	gene	105.44160	105.45296	negative	MGI_C57BL6J_1925885	Kcnd3os	NCBI_Gene:78635,ENSEMBL:ENSMUSG00000074346	MGI:1925885	antisense lncRNA gene	potassium voltage-gated channel, Shal-related family, member 3, opposite strand
3	gene	105.45220	105.67400	positive	MGI_C57BL6J_1928743	Kcnd3	NCBI_Gene:56543,ENSEMBL:ENSMUSG00000040896	MGI:1928743	protein coding gene	potassium voltage-gated channel, Shal-related family, member 3
3	gene	105.50291	105.50485	positive	MGI_C57BL6J_5663984	Gm43847	ENSEMBL:ENSMUSG00000105753	MGI:5663984	lncRNA gene	predicted gene 43847
3	gene	105.67827	105.68812	negative	MGI_C57BL6J_1858415	Ddx20	NCBI_Gene:53975,ENSEMBL:ENSMUSG00000027905	MGI:1858415	protein coding gene	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
3	gene	105.70460	105.72084	positive	MGI_C57BL6J_1923497	Inka2	NCBI_Gene:109050,ENSEMBL:ENSMUSG00000048458	MGI:1923497	protein coding gene	inka box actin regulator 2
3	gene	105.72590	105.72715	negative	MGI_C57BL6J_5663985	Gm43848	ENSEMBL:ENSMUSG00000106317	MGI:5663985	lncRNA gene	predicted gene 43848
3	gene	105.72726	105.80138	negative	MGI_C57BL6J_97852	Rap1a	NCBI_Gene:109905,ENSEMBL:ENSMUSG00000068798	MGI:97852	protein coding gene	RAS-related protein 1a
3	gene	105.73244	105.73388	negative	MGI_C57BL6J_5663465	Gm43328	ENSEMBL:ENSMUSG00000105677	MGI:5663465	lncRNA gene	predicted gene 43328
3	gene	105.76697	105.77020	negative	MGI_C57BL6J_5663466	Gm43329	ENSEMBL:ENSMUSG00000105842	MGI:5663466	lncRNA gene	predicted gene 43329
3	gene	105.78288	105.78503	negative	MGI_C57BL6J_5663467	Gm43330	ENSEMBL:ENSMUSG00000106341	MGI:5663467	lncRNA gene	predicted gene 43330
3	gene	105.78763	105.78932	negative	MGI_C57BL6J_5663468	Gm43331	ENSEMBL:ENSMUSG00000104910	MGI:5663468	lncRNA gene	predicted gene 43331
3	gene	105.81554	105.81736	positive	MGI_C57BL6J_3648206	Gm5547	NCBI_Gene:433637,ENSEMBL:ENSMUSG00000104835	MGI:3648206	lncRNA gene	predicted gene 5547
3	gene	105.82178	105.82585	negative	MGI_C57BL6J_5826475	Gm46838	NCBI_Gene:108168921	MGI:5826475	lncRNA gene	predicted gene, 46838
3	gene	105.87086	105.90893	positive	MGI_C57BL6J_104847	Adora3	NCBI_Gene:11542,ENSEMBL:ENSMUSG00000000562	MGI:104847	protein coding gene	adenosine A3 receptor
3	gene	105.87086	105.92404	positive	MGI_C57BL6J_5604098	Tmigd3	NCBI_Gene:69296,ENSEMBL:ENSMUSG00000074344	MGI:5604098	protein coding gene	transmembrane and immunoglobulin domain containing 3
3	gene	105.92436	105.93293	negative	MGI_C57BL6J_3588284	I830077J02Rik	NCBI_Gene:433638,ENSEMBL:ENSMUSG00000074342	MGI:3588284	protein coding gene	RIKEN cDNA I830077J02 gene
3	gene	105.94268	105.96025	negative	MGI_C57BL6J_1100495	Atp5pb	NCBI_Gene:11950,ENSEMBL:ENSMUSG00000000563	MGI:1100495	protein coding gene	ATP synthase peripheral stalk-membrane subunit b
3	gene	105.95937	105.97004	positive	MGI_C57BL6J_1917715	Wdr77	NCBI_Gene:70465,ENSEMBL:ENSMUSG00000000561	MGI:1917715	protein coding gene	WD repeat domain 77
3	gene	105.95950	105.98460	positive	MGI_C57BL6J_5663027	Gm42890	ENSEMBL:ENSMUSG00000105852	MGI:5663027	lncRNA gene	predicted gene 42890
3	gene	105.97371	105.98742	positive	MGI_C57BL6J_106661	Ovgp1	NCBI_Gene:12659,ENSEMBL:ENSMUSG00000074340	MGI:106661	protein coding gene	oviductal glycoprotein 1
3	gene	105.99696	106.01465	negative	MGI_C57BL6J_1923670	Pifo	NCBI_Gene:100503311,ENSEMBL:ENSMUSG00000010136	MGI:1923670	protein coding gene	primary cilia formation
3	gene	106.00156	106.01754	positive	MGI_C57BL6J_5662859	Gm42722	ENSEMBL:ENSMUSG00000106093	MGI:5662859	lncRNA gene	predicted gene 42722
3	gene	106.00786	106.00939	negative	MGI_C57BL6J_5662858	Gm42721	ENSEMBL:ENSMUSG00000104592	MGI:5662858	lncRNA gene	predicted gene 42721
3	gene	106.01692	106.03313	negative	MGI_C57BL6J_2676649	Chil5	NCBI_Gene:229687,ENSEMBL:ENSMUSG00000043873	MGI:2676649	protein coding gene	chitinase-like 5
3	pseudogene	106.03466	106.03509	positive	MGI_C57BL6J_3782724	Gm4540	NCBI_Gene:100043594,ENSEMBL:ENSMUSG00000092072	MGI:3782724	pseudogene	predicted gene 4540
3	pseudogene	106.04171	106.04484	negative	MGI_C57BL6J_3779914	Gm9504	NCBI_Gene:102638412,ENSEMBL:ENSMUSG00000105277	MGI:3779914	pseudogene	predicted gene 9504
3	pseudogene	106.09094	106.09155	positive	MGI_C57BL6J_3782425	Gm4248	NCBI_Gene:100043129,ENSEMBL:ENSMUSG00000105051	MGI:3782425	pseudogene	predicted pseudogene 4248
3	gene	106.11323	106.13212	positive	MGI_C57BL6J_1932052	Chia1	NCBI_Gene:81600,ENSEMBL:ENSMUSG00000062778	MGI:1932052	protein coding gene	chitinase, acidic 1
3	gene	106.14755	106.16756	negative	MGI_C57BL6J_1330860	Chil3	NCBI_Gene:12655,ENSEMBL:ENSMUSG00000040809	MGI:1330860	protein coding gene	chitinase-like 3
3	pseudogene	106.17783	106.17918	negative	MGI_C57BL6J_5663846	Gm43709	ENSEMBL:ENSMUSG00000104855	MGI:5663846	pseudogene	predicted gene 43709
3	gene	106.20149	106.21951	negative	MGI_C57BL6J_1341098	Chil4	NCBI_Gene:104183,ENSEMBL:ENSMUSG00000063779	MGI:1341098	protein coding gene	chitinase-like 4
3	pseudogene	106.27520	106.29976	positive	MGI_C57BL6J_3648401	Gm6522	NCBI_Gene:624696,ENSEMBL:ENSMUSG00000106373	MGI:3648401	pseudogene	predicted gene 6522
3	pseudogene	106.37321	106.37431	positive	MGI_C57BL6J_5663349	Gm43212	ENSEMBL:ENSMUSG00000105436	MGI:5663349	pseudogene	predicted gene 43212
3	gene	106.38738	106.40620	negative	MGI_C57BL6J_2682303	Chil6	NCBI_Gene:229688,ENSEMBL:ENSMUSG00000027902	MGI:2682303	protein coding gene	chitinase-like 6
3	gene	106.47828	106.48087	positive	MGI_C57BL6J_5611472	Gm38244	ENSEMBL:ENSMUSG00000104350	MGI:5611472	unclassified gene	predicted gene, 38244
3	gene	106.47828	106.48087	negative	MGI_C57BL6J_3642656	Gm10673	NA	NA	protein coding gene	predicted gene 10673
3	gene	106.48198	106.48591	negative	MGI_C57BL6J_1916456	2010016I18Rik	NCBI_Gene:69206,ENSEMBL:ENSMUSG00000091575	MGI:1916456	lncRNA gene	RIKEN cDNA 2010016I18 gene
3	gene	106.48240	106.50303	positive	MGI_C57BL6J_2181193	Dennd2d	NCBI_Gene:72121,ENSEMBL:ENSMUSG00000027901	MGI:2181193	protein coding gene	DENN/MADD domain containing 2D
3	gene	106.50226	106.54780	negative	MGI_C57BL6J_2139793	Cept1	NCBI_Gene:99712,ENSEMBL:ENSMUSG00000040774	MGI:2139793	protein coding gene	choline/ethanolaminephosphotransferase 1
3	gene	106.50616	106.51056	negative	MGI_C57BL6J_2442528	9030425P06Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 9030425P06 gene
3	gene	106.54780	106.57589	positive	MGI_C57BL6J_1914421	Dram2	NCBI_Gene:67171,ENSEMBL:ENSMUSG00000027900	MGI:1914421	protein coding gene	DNA-damage regulated autophagy modulator 2
3	pseudogene	106.55348	106.55389	negative	MGI_C57BL6J_5663207	Gm43070	ENSEMBL:ENSMUSG00000106592	MGI:5663207	pseudogene	predicted gene 43070
3	gene	106.56761	106.56964	positive	MGI_C57BL6J_5663208	Gm43071	ENSEMBL:ENSMUSG00000105272	MGI:5663208	unclassified gene	predicted gene 43071
3	gene	106.57895	106.57929	negative	MGI_C57BL6J_1918693	5530402H23Rik	NA	NA	unclassified gene	RIKEN cDNA 5530402H23 gene
3	gene	106.58926	106.59086	positive	MGI_C57BL6J_5611499	Gm38271	ENSEMBL:ENSMUSG00000103053	MGI:5611499	unclassified gene	predicted gene, 38271
3	gene	106.58926	106.59086	negative	MGI_C57BL6J_3782733	Gm4549	NA	NA	protein coding gene	predicted gene 4549
3	gene	106.68494	106.73658	positive	MGI_C57BL6J_2445214	Lrif1	NCBI_Gene:321000,ENSEMBL:ENSMUSG00000056260	MGI:2445214	protein coding gene	ligand dependent nuclear receptor interacting factor 1
3	gene	106.72560	106.73028	positive	MGI_C57BL6J_5611481	Gm38253	ENSEMBL:ENSMUSG00000102780	MGI:5611481	unclassified gene	predicted gene, 38253
3	gene	106.75886	106.79015	negative	MGI_C57BL6J_88341	Cd53	NCBI_Gene:12508,ENSEMBL:ENSMUSG00000040747	MGI:88341	protein coding gene	CD53 antigen
3	gene	106.82049	106.82629	negative	MGI_C57BL6J_3030100	Olfr266	NCBI_Gene:258482,ENSEMBL:ENSMUSG00000043529	MGI:3030100	protein coding gene	olfactory receptor 266
3	gene	106.82731	106.87936	negative	MGI_C57BL6J_5594666	Gm35507	NCBI_Gene:102639119,ENSEMBL:ENSMUSG00000105102	MGI:5594666	lncRNA gene	predicted gene, 35507
3	gene	106.90324	107.09389	negative	MGI_C57BL6J_5504123	Gm27008	NCBI_Gene:102639188,ENSEMBL:ENSMUSG00000098108	MGI:5504123	lncRNA gene	predicted gene, 27008
3	gene	107.03616	107.03813	positive	MGI_C57BL6J_96660	Kcna3	NCBI_Gene:16491,ENSEMBL:ENSMUSG00000047959	MGI:96660	protein coding gene	potassium voltage-gated channel, shaker-related subfamily, member 3
3	gene	107.03950	107.05435	positive	MGI_C57BL6J_2139742	AI504432	NCBI_Gene:229694,ENSEMBL:ENSMUSG00000056145	MGI:2139742	lncRNA gene	expressed sequence AI504432
3	gene	107.05495	107.06668	negative	MGI_C57BL6J_5621597	Gm38712	NCBI_Gene:105242447	MGI:5621597	lncRNA gene	predicted gene, 38712
3	gene	107.09085	107.11500	positive	MGI_C57BL6J_96659	Kcna2	NCBI_Gene:16490,ENSEMBL:ENSMUSG00000040724	MGI:96659	protein coding gene	potassium voltage-gated channel, shaker-related subfamily, member 2
3	gene	107.09088	107.09840	positive	MGI_C57BL6J_1924480	A930002I21Rik	ENSEMBL:ENSMUSG00000050179	MGI:1924480	lncRNA gene	RIKEN cDNA A930002I21 gene
3	gene	107.18306	107.19572	positive	MGI_C57BL6J_3037820	Kcna10	NCBI_Gene:242151,ENSEMBL:ENSMUSG00000042861	MGI:3037820	protein coding gene	potassium voltage-gated channel, shaker-related subfamily, member 10
3	gene	107.21129	107.22173	negative	MGI_C57BL6J_2684977	Cym	NCBI_Gene:229697,ENSEMBL:ENSMUSG00000046213	MGI:2684977	protein coding gene	chymosin
3	gene	107.23061	107.23472	positive	MGI_C57BL6J_2442999	A630076J17Rik	NCBI_Gene:319929,ENSEMBL:ENSMUSG00000094613	MGI:2442999	protein coding gene	RIKEN cDNA A630076J17 gene
3	gene	107.23192	107.23971	negative	MGI_C57BL6J_2180370	Prok1	NCBI_Gene:246691,ENSEMBL:ENSMUSG00000070368	MGI:2180370	protein coding gene	prokineticin 1
3	gene	107.27886	107.28408	positive	MGI_C57BL6J_1915826	Lamtor5	NCBI_Gene:68576,ENSEMBL:ENSMUSG00000087260	MGI:1915826	protein coding gene	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5
3	gene	107.29123	107.31212	positive	MGI_C57BL6J_2385183	Slc16a4	NCBI_Gene:229699,ENSEMBL:ENSMUSG00000027896	MGI:2385183	protein coding gene	solute carrier family 16 (monocarboxylic acid transporters), member 4
3	gene	107.30551	107.33497	negative	MGI_C57BL6J_2443205	Rbm15	NCBI_Gene:229700,ENSEMBL:ENSMUSG00000048109	MGI:2443205	protein coding gene	RNA binding motif protein 15
3	pseudogene	107.34296	107.34370	positive	MGI_C57BL6J_3647225	Gm5279	NCBI_Gene:383901,ENSEMBL:ENSMUSG00000105532	MGI:3647225	pseudogene	predicted gene 5279
3	gene	107.36483	107.37311	positive	MGI_C57BL6J_5594859	Gm35700	NCBI_Gene:102639370	MGI:5594859	lncRNA gene	predicted gene, 35700
3	gene	107.38081	107.38256	positive	MGI_C57BL6J_5623005	Gm40120	NCBI_Gene:105244526	MGI:5623005	lncRNA gene	predicted gene, 40120
3	gene	107.41586	107.41620	negative	MGI_C57BL6J_5454160	Gm24383	ENSEMBL:ENSMUSG00000084640	MGI:5454160	unclassified non-coding RNA gene	predicted gene, 24383
3	gene	107.43830	107.45955	negative	MGI_C57BL6J_96670	Kcnc4	NCBI_Gene:99738,ENSEMBL:ENSMUSG00000027895	MGI:96670	protein coding gene	potassium voltage gated channel, Shaw-related subfamily, member 4
3	gene	107.44034	107.44298	negative	MGI_C57BL6J_2443689	A330043J11Rik	NA	NA	unclassified gene	RIKEN cDNA A330043J11 gene
3	gene	107.46754	107.51802	negative	MGI_C57BL6J_2442535	Slc6a17	NCBI_Gene:229706,ENSEMBL:ENSMUSG00000027894	MGI:2442535	protein coding gene	solute carrier family 6 (neurotransmitter transporter), member 17
3	gene	107.54789	107.55415	positive	MGI_C57BL6J_5595256	Gm36097	NCBI_Gene:102639893	MGI:5595256	lncRNA gene	predicted gene, 36097
3	gene	107.55369	107.55507	negative	MGI_C57BL6J_1914841	Ubl4b	NCBI_Gene:67591,ENSEMBL:ENSMUSG00000055891	MGI:1914841	protein coding gene	ubiquitin-like 4B
3	gene	107.59503	107.60587	positive	MGI_C57BL6J_1277097	Alx3	NCBI_Gene:11694,ENSEMBL:ENSMUSG00000014603	MGI:1277097	protein coding gene	aristaless-like homeobox 3
3	gene	107.61253	107.63171	negative	MGI_C57BL6J_2443884	Strip1	NCBI_Gene:229707,ENSEMBL:ENSMUSG00000014601	MGI:2443884	protein coding gene	striatin interacting protein 1
3	gene	107.63132	107.63477	positive	MGI_C57BL6J_3779172	Gm10961	NCBI_Gene:102639972,ENSEMBL:ENSMUSG00000078604	MGI:3779172	lncRNA gene	predicted gene 10961
3	gene	107.66312	107.69656	negative	MGI_C57BL6J_2385184	Ahcyl1	NCBI_Gene:229709,ENSEMBL:ENSMUSG00000027893	MGI:2385184	protein coding gene	S-adenosylhomocysteine hydrolase-like 1
3	gene	107.69666	107.81295	positive	MGI_C57BL6J_5623006	Gm40121	NCBI_Gene:105244527	MGI:5623006	lncRNA gene	predicted gene, 40121
3	gene	107.74105	107.76047	negative	MGI_C57BL6J_1339753	Csf1	NCBI_Gene:12977,ENSEMBL:ENSMUSG00000014599	MGI:1339753	protein coding gene	colony stimulating factor 1 (macrophage)
3	pseudogene	107.78186	107.78247	positive	MGI_C57BL6J_5663370	Gm43233	ENSEMBL:ENSMUSG00000106531	MGI:5663370	pseudogene	predicted gene 43233
3	gene	107.82022	107.83354	negative	MGI_C57BL6J_5595370	Gm36211	ENSEMBL:ENSMUSG00000106426	MGI:5595370	lncRNA gene	predicted gene, 36211
3	pseudogene	107.86802	107.86866	negative	MGI_C57BL6J_3645483	Gm5075	NCBI_Gene:280047,ENSEMBL:ENSMUSG00000105944	MGI:3645483	pseudogene	predicted gene 5075
3	gene	107.87386	107.89290	positive	MGI_C57BL6J_2139743	Eps8l3	NCBI_Gene:99662,ENSEMBL:ENSMUSG00000040600	MGI:2139743	protein coding gene	EPS8-like 3
3	gene	107.87480	107.87548	positive	MGI_C57BL6J_1922590	4930554G22Rik	ENSEMBL:ENSMUSG00000106359	MGI:1922590	unclassified gene	RIKEN cDNA 4930554G22 gene
3	gene	107.88597	107.88785	positive	MGI_C57BL6J_5663882	Gm43745	ENSEMBL:ENSMUSG00000105456	MGI:5663882	unclassified gene	predicted gene 43745
3	gene	107.88597	107.88785	negative	MGI_C57BL6J_3642497	Gm10667	NA	NA	unclassified gene	predicted gene 10667
3	gene	107.88885	107.89621	negative	MGI_C57BL6J_3584041	4933431E20Rik	NCBI_Gene:329735,ENSEMBL:ENSMUSG00000086968	MGI:3584041	lncRNA gene	RIKEN cDNA 4933431E20 gene
3	gene	107.89582	107.89869	positive	MGI_C57BL6J_1309466	Gstm5	NCBI_Gene:14866,ENSEMBL:ENSMUSG00000004032	MGI:1309466	protein coding gene	glutathione S-transferase, mu 5
3	pseudogene	107.90678	107.91132	negative	MGI_C57BL6J_3779925	Gm9515	NCBI_Gene:671031,ENSEMBL:ENSMUSG00000105872	MGI:3779925	pseudogene	predicted gene 9515
3	pseudogene	107.91966	107.91981	positive	MGI_C57BL6J_3650952	Gm12489	ENSEMBL:ENSMUSG00000082720	MGI:3650952	pseudogene	predicted gene 12489
3	gene	107.92633	107.93187	negative	MGI_C57BL6J_1915562	Gstm7	NCBI_Gene:68312,ENSEMBL:ENSMUSG00000004035	MGI:1915562	protein coding gene	glutathione S-transferase, mu 7
3	gene	107.93885	107.95348	negative	MGI_C57BL6J_1309467	Gstm6	NCBI_Gene:14867,ENSEMBL:ENSMUSG00000068762	MGI:1309467	protein coding gene	glutathione S-transferase, mu 6
3	pseudogene	107.95079	107.95312	negative	MGI_C57BL6J_3702525	Gm12494	ENSEMBL:ENSMUSG00000089664	MGI:3702525	pseudogene	predicted gene 12494
3	gene	107.96370	107.96928	negative	MGI_C57BL6J_106026	Gstm3	NCBI_Gene:14864,ENSEMBL:ENSMUSG00000004038	MGI:106026	protein coding gene	glutathione S-transferase, mu 3
3	pseudogene	107.97959	107.97995	positive	MGI_C57BL6J_3650111	Gm12497	NCBI_Gene:624701,ENSEMBL:ENSMUSG00000049231	MGI:3650111	pseudogene	predicted pseudogene 12497
3	gene	107.98170	107.98645	negative	MGI_C57BL6J_95861	Gstm2	NCBI_Gene:14863,ENSEMBL:ENSMUSG00000040562	MGI:95861	protein coding gene	glutathione S-transferase, mu 2
3	pseudogene	107.99944	107.99984	negative	MGI_C57BL6J_5663883	Gm43746	ENSEMBL:ENSMUSG00000106614	MGI:5663883	pseudogene	predicted gene 43746
3	gene	108.01225	108.01797	negative	MGI_C57BL6J_95860	Gstm1	NCBI_Gene:14862,ENSEMBL:ENSMUSG00000058135	MGI:95860	protein coding gene	glutathione S-transferase, mu 1
3	gene	108.01829	108.02594	negative	MGI_C57BL6J_3650533	Gm12498	NCBI_Gene:108168891,ENSEMBL:ENSMUSG00000087357	MGI:3650533	lncRNA gene	predicted gene 12498
3	pseudogene	108.01972	108.02041	positive	MGI_C57BL6J_3650307	Gm12502	NCBI_Gene:102640327,ENSEMBL:ENSMUSG00000083627	MGI:3650307	pseudogene	predicted gene 12502
3	pseudogene	108.02960	108.03136	negative	MGI_C57BL6J_3650532	Gm12499	ENSEMBL:ENSMUSG00000081688	MGI:3650532	pseudogene	predicted gene 12499
3	gene	108.03057	108.04508	negative	MGI_C57BL6J_95862	Gstm4	NCBI_Gene:14865,ENSEMBL:ENSMUSG00000027890	MGI:95862	protein coding gene	glutathione S-transferase, mu 4
3	gene	108.03083	108.03696	negative	MGI_C57BL6J_5595657	Gm36498	NCBI_Gene:102640435	MGI:5595657	lncRNA gene	predicted gene, 36498
3	gene	108.03403	108.03416	positive	MGI_C57BL6J_5455369	Gm25592	ENSEMBL:ENSMUSG00000064569	MGI:5455369	snoRNA gene	predicted gene, 25592
3	gene	108.07406	108.08667	negative	MGI_C57BL6J_88016	Ampd2	NCBI_Gene:109674,ENSEMBL:ENSMUSG00000027889	MGI:88016	protein coding gene	adenosine monophosphate deaminase 2
3	gene	108.08558	108.08801	positive	MGI_C57BL6J_3650304	Gm12500	NCBI_Gene:791415,ENSEMBL:ENSMUSG00000056411	MGI:3650304	lncRNA gene	predicted gene 12500
3	gene	108.08680	108.10143	positive	MGI_C57BL6J_95779	Gnat2	NCBI_Gene:14686,ENSEMBL:ENSMUSG00000009108	MGI:95779	protein coding gene	guanine nucleotide binding protein, alpha transducing 2
3	gene	108.10728	108.14615	negative	MGI_C57BL6J_95773	Gnai3	NCBI_Gene:14679,ENSEMBL:ENSMUSG00000000001	MGI:95773	protein coding gene	guanine nucleotide binding protein (G protein), alpha inhibiting 3
3	gene	108.14832	108.15493	negative	MGI_C57BL6J_2441719	Gpr61	NCBI_Gene:229714,ENSEMBL:ENSMUSG00000046793	MGI:2441719	protein coding gene	G protein-coupled receptor 61
3	gene	108.16644	108.18591	positive	MGI_C57BL6J_3651331	Gm12524	ENSEMBL:ENSMUSG00000085318	MGI:3651331	lncRNA gene	predicted gene 12524
3	gene	108.17266	108.17537	negative	MGI_C57BL6J_5623007	Gm40122	NCBI_Gene:105244528	MGI:5623007	lncRNA gene	predicted gene, 40122
3	gene	108.18629	108.19229	positive	MGI_C57BL6J_2653612	Amigo1	NCBI_Gene:229715,ENSEMBL:ENSMUSG00000050947	MGI:2653612	protein coding gene	adhesion molecule with Ig like domain 1
3	gene	108.19569	108.20223	negative	MGI_C57BL6J_1919273	Cyb561d1	NCBI_Gene:72023,ENSEMBL:ENSMUSG00000048796	MGI:1919273	protein coding gene	cytochrome b-561 domain containing 1
3	gene	108.20222	108.21093	negative	MGI_C57BL6J_1919772	Atxn7l2	NCBI_Gene:72522,ENSEMBL:ENSMUSG00000048997	MGI:1919772	protein coding gene	ataxin 7-like 2
3	gene	108.21041	108.22750	negative	MGI_C57BL6J_1328311	Sypl2	NCBI_Gene:17306,ENSEMBL:ENSMUSG00000027887	MGI:1328311	protein coding gene	synaptophysin-like 2
3	gene	108.22679	108.24025	positive	MGI_C57BL6J_5623008	Gm40123	NCBI_Gene:105244529,ENSEMBL:ENSMUSG00000105961	MGI:5623008	lncRNA gene	predicted gene, 40123
3	pseudogene	108.23930	108.23999	negative	MGI_C57BL6J_3649307	Gm12501	NCBI_Gene:668686,ENSEMBL:ENSMUSG00000083462	MGI:3649307	pseudogene	predicted gene 12501
3	gene	108.24891	108.25699	negative	MGI_C57BL6J_1922690	1700010K24Rik	ENSEMBL:ENSMUSG00000085102	MGI:1922690	lncRNA gene	RIKEN cDNA 1700010K24 gene
3	gene	108.25693	108.27997	positive	MGI_C57BL6J_1347009	Psma5	NCBI_Gene:26442,ENSEMBL:ENSMUSG00000068749	MGI:1347009	protein coding gene	proteasome (prosome, macropain) subunit, alpha type 5
3	gene	108.28390	108.28484	negative	MGI_C57BL6J_3649602	Gm12523	ENSEMBL:ENSMUSG00000084863	MGI:3649602	lncRNA gene	predicted gene 12523
3	gene	108.28405	108.36152	positive	MGI_C57BL6J_1338015	Sort1	NCBI_Gene:20661,ENSEMBL:ENSMUSG00000068747	MGI:1338015	protein coding gene	sortilin 1
3	gene	108.28788	108.29311	positive	MGI_C57BL6J_5011528	Gm19343	NA	NA	unclassified gene	predicted gene%2c 19343
3	gene	108.28788	108.29312	positive	MGI_C57BL6J_5663236	Gm43099	ENSEMBL:ENSMUSG00000105358	MGI:5663236	unclassified gene	predicted gene 43099
3	gene	108.36155	108.36226	positive	MGI_C57BL6J_3649596	Gm12525	ENSEMBL:ENSMUSG00000078601	MGI:3649596	lncRNA gene	predicted gene 12525
3	gene	108.36491	108.38006	positive	MGI_C57BL6J_1916003	Mybphl	NCBI_Gene:68753,ENSEMBL:ENSMUSG00000068745	MGI:1916003	protein coding gene	myosin binding protein H-like
3	gene	108.37928	108.38374	negative	MGI_C57BL6J_3651334	Gm12522	NCBI_Gene:100038453,ENSEMBL:ENSMUSG00000074281	MGI:3651334	lncRNA gene	predicted gene 12522
3	gene	108.38380	108.38823	positive	MGI_C57BL6J_1913099	Psrc1	NCBI_Gene:56742,ENSEMBL:ENSMUSG00000068744	MGI:1913099	protein coding gene	proline/serine-rich coiled-coil 1
3	gene	108.39085	108.41592	negative	MGI_C57BL6J_1858235	Celsr2	NCBI_Gene:53883,ENSEMBL:ENSMUSG00000068740	MGI:1858235	protein coding gene	cadherin, EGF LAG seven-pass G-type receptor 2
3	gene	108.42486	108.44526	negative	MGI_C57BL6J_102809	Sars	NCBI_Gene:20226,ENSEMBL:ENSMUSG00000068739	MGI:102809	protein coding gene	seryl-aminoacyl-tRNA synthetase
3	gene	108.44133	108.44145	positive	MGI_C57BL6J_5452719	Gm22942	ENSEMBL:ENSMUSG00000089188	MGI:5452719	snoRNA gene	predicted gene, 22942
3	pseudogene	108.45127	108.45165	negative	MGI_C57BL6J_5663575	Gm43438	ENSEMBL:ENSMUSG00000106101	MGI:5663575	pseudogene	predicted gene 43438
3	gene	108.45569	108.53675	negative	MGI_C57BL6J_1923930	5330417C22Rik	NCBI_Gene:229722,ENSEMBL:ENSMUSG00000040412	MGI:1923930	protein coding gene	RIKEN cDNA 5330417C22 gene
3	gene	108.49812	108.49824	positive	MGI_C57BL6J_5453113	Gm23336	ENSEMBL:ENSMUSG00000080673	MGI:5453113	snRNA gene	predicted gene, 23336
3	gene	108.53265	108.53482	negative	MGI_C57BL6J_5611087	Gm37859	ENSEMBL:ENSMUSG00000103761	MGI:5611087	unclassified gene	predicted gene, 37859
3	gene	108.53415	108.54472	positive	MGI_C57BL6J_1922754	1700013F07Rik	NCBI_Gene:75504,ENSEMBL:ENSMUSG00000027886	MGI:1922754	protein coding gene	RIKEN cDNA 1700013F07 gene
3	gene	108.55434	108.55475	negative	MGI_C57BL6J_3819484	Scarna2	NCBI_Gene:100217438,ENSEMBL:ENSMUSG00000088185	MGI:3819484	snoRNA gene	small Cajal body-specific RNA 2
3	gene	108.55547	108.55690	positive	MGI_C57BL6J_5663572	Gm43435	ENSEMBL:ENSMUSG00000105810	MGI:5663572	unclassified gene	predicted gene 43435
3	gene	108.55643	108.56247	negative	MGI_C57BL6J_1914745	Tmem167b	NCBI_Gene:67495,ENSEMBL:ENSMUSG00000068732	MGI:1914745	protein coding gene	transmembrane protein 167B
3	gene	108.56731	108.56738	negative	MGI_C57BL6J_5452637	Gm22860	ENSEMBL:ENSMUSG00000092718	MGI:5452637	miRNA gene	predicted gene, 22860
3	gene	108.57170	108.58322	positive	MGI_C57BL6J_1913500	Taf13	NCBI_Gene:99730,ENSEMBL:ENSMUSG00000048100	MGI:1913500	protein coding gene	TATA-box binding protein associated factor 13
3	gene	108.59126	108.64572	positive	MGI_C57BL6J_2139593	Wdr47	NCBI_Gene:99512,ENSEMBL:ENSMUSG00000040389	MGI:2139593	protein coding gene	WD repeat domain 47
3	pseudogene	108.60228	108.60439	negative	MGI_C57BL6J_3649535	Gm12517	NCBI_Gene:108168855,ENSEMBL:ENSMUSG00000081499	MGI:3649535	pseudogene	predicted gene 12517
3	gene	108.65388	108.67884	positive	MGI_C57BL6J_2385186	Clcc1	NCBI_Gene:229725,ENSEMBL:ENSMUSG00000027884	MGI:2385186	protein coding gene	chloride channel CLIC-like 1
3	gene	108.67864	108.72233	negative	MGI_C57BL6J_1923373	Gpsm2	NCBI_Gene:76123,ENSEMBL:ENSMUSG00000027883	MGI:1923373	protein coding gene	G-protein signalling modulator 2 (AGS3-like, C. elegans)
3	gene	108.70891	108.71265	positive	MGI_C57BL6J_5521087	Gm27244	ENSEMBL:ENSMUSG00000098800	MGI:5521087	lncRNA gene	predicted gene 27244
3	gene	108.73956	108.78231	positive	MGI_C57BL6J_3584453	Aknad1	NCBI_Gene:329738,ENSEMBL:ENSMUSG00000049565	MGI:3584453	protein coding gene	AKNA domain containing 1
3	gene	108.79318	108.84053	negative	MGI_C57BL6J_107362	Stxbp3	NCBI_Gene:20912,ENSEMBL:ENSMUSG00000027882	MGI:107362	protein coding gene	syntaxin binding protein 3
3	gene	108.85368	108.89001	negative	MGI_C57BL6J_2443535	Fndc7	NCBI_Gene:320181,ENSEMBL:ENSMUSG00000045326	MGI:2443535	protein coding gene	fibronectin type III domain containing 7
3	pseudogene	108.88182	108.88197	positive	MGI_C57BL6J_5663234	Gm43097	ENSEMBL:ENSMUSG00000105175	MGI:5663234	pseudogene	predicted gene 43097
3	gene	108.90281	108.91175	negative	MGI_C57BL6J_1914171	Prpf38b	NCBI_Gene:66921,ENSEMBL:ENSMUSG00000027881	MGI:1914171	protein coding gene	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
3	gene	108.93854	108.96078	positive	MGI_C57BL6J_1913965	Henmt1	NCBI_Gene:66715,ENSEMBL:ENSMUSG00000045662	MGI:1913965	protein coding gene	HEN1 methyltransferase homolog 1 (Arabidopsis)
3	gene	108.93987	108.94045	negative	MGI_C57BL6J_3704224	Gm9857	ENSEMBL:ENSMUSG00000051638	MGI:3704224	protein coding gene	predicted gene 9857
3	gene	108.97100	109.02761	negative	MGI_C57BL6J_3036259	Fam102b	NCBI_Gene:329739,ENSEMBL:ENSMUSG00000040339	MGI:3036259	protein coding gene	family with sequence similarity 102, member B
3	gene	109.00002	109.00209	positive	MGI_C57BL6J_5663358	Gm43221	ENSEMBL:ENSMUSG00000106108	MGI:5663358	lncRNA gene	predicted gene 43221
3	gene	109.05563	109.05575	positive	MGI_C57BL6J_5690776	Gm44384	ENSEMBL:ENSMUSG00000105371	MGI:5690776	miRNA gene	predicted gene, 44384
3	gene	109.05571	109.06535	positive	MGI_C57BL6J_5595937	Gm36778	NCBI_Gene:102640795	MGI:5595937	lncRNA gene	predicted gene, 36778
3	gene	109.07859	109.08041	negative	MGI_C57BL6J_1924115	4930408K08Rik	ENSEMBL:ENSMUSG00000105638	MGI:1924115	lncRNA gene	RIKEN cDNA 4930408K08 gene
3	gene	109.08047	109.11669	positive	MGI_C57BL6J_1921936	Slc25a54	NCBI_Gene:74686,ENSEMBL:ENSMUSG00000027880	MGI:1921936	protein coding gene	solute carrier family 25, member 54
3	gene	109.12053	109.12307	negative	MGI_C57BL6J_5011576	Gm19391	NCBI_Gene:105244530,ENSEMBL:ENSMUSG00000105139	MGI:5011576	lncRNA gene	predicted gene, 19391
3	gene	109.12315	109.16846	positive	MGI_C57BL6J_1917160	Slc25a24	NCBI_Gene:229731,ENSEMBL:ENSMUSG00000040322	MGI:1917160	protein coding gene	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24
3	pseudogene	109.19200	109.19287	negative	MGI_C57BL6J_3651348	Gm13865	NCBI_Gene:100417395,ENSEMBL:ENSMUSG00000083717	MGI:3651348	pseudogene	predicted gene 13865
3	gene	109.34026	109.68570	positive	MGI_C57BL6J_1888518	Vav3	NCBI_Gene:57257,ENSEMBL:ENSMUSG00000033721	MGI:1888518	protein coding gene	vav 3 oncogene
3	gene	109.45090	109.45470	positive	MGI_C57BL6J_2444726	C130083B21Rik	NA	NA	unclassified gene	RIKEN cDNA C130083B21 gene
3	gene	109.78004	110.14401	negative	MGI_C57BL6J_1934028	Ntng1	NCBI_Gene:80883,ENSEMBL:ENSMUSG00000059857	MGI:1934028	protein coding gene	netrin G1
3	gene	109.86378	109.86388	positive	MGI_C57BL6J_5455458	Gm25681	ENSEMBL:ENSMUSG00000065872	MGI:5455458	snRNA gene	predicted gene, 25681
3	pseudogene	109.90738	109.90787	positive	MGI_C57BL6J_3650178	Gm12535	ENSEMBL:ENSMUSG00000082624	MGI:3650178	pseudogene	predicted gene 12535
3	gene	110.24386	110.24463	negative	MGI_C57BL6J_5662653	Gm42516	ENSEMBL:ENSMUSG00000105639	MGI:5662653	unclassified gene	predicted gene 42516
3	gene	110.24610	110.25100	negative	MGI_C57BL6J_2139971	Prmt6	NCBI_Gene:99890,ENSEMBL:ENSMUSG00000049300	MGI:2139971	protein coding gene	protein arginine N-methyltransferase 6
3	gene	110.25002	110.25371	positive	MGI_C57BL6J_3697343	C130013H08Rik	ENSEMBL:ENSMUSG00000105509	MGI:3697343	lncRNA gene	RIKEN cDNA C130013H08 gene
3	pseudogene	110.27714	110.27747	negative	MGI_C57BL6J_5663542	Gm43405	ENSEMBL:ENSMUSG00000104944	MGI:5663542	pseudogene	predicted gene 43405
3	pseudogene	110.39913	110.39977	positive	MGI_C57BL6J_5011370	Gm19185	NCBI_Gene:100418401,ENSEMBL:ENSMUSG00000105859	MGI:5011370	pseudogene	predicted gene, 19185
3	pseudogene	110.56407	110.56440	negative	MGI_C57BL6J_5663543	Gm43406	ENSEMBL:ENSMUSG00000105121	MGI:5663543	pseudogene	predicted gene 43406
3	gene	110.56444	110.56454	negative	MGI_C57BL6J_5455853	Gm26076	ENSEMBL:ENSMUSG00000077253	MGI:5455853	snRNA gene	predicted gene, 26076
3	gene	110.63432	110.63686	positive	MGI_C57BL6J_5663541	Gm43404	ENSEMBL:ENSMUSG00000106650	MGI:5663541	unclassified gene	predicted gene 43404
3	pseudogene	111.10850	111.10882	positive	MGI_C57BL6J_5663544	Gm43407	ENSEMBL:ENSMUSG00000106487	MGI:5663544	pseudogene	predicted gene 43407
3	pseudogene	111.32107	111.32299	negative	MGI_C57BL6J_3647777	Gm9314	NCBI_Gene:668712,ENSEMBL:ENSMUSG00000106100	MGI:3647777	pseudogene	predicted gene 9314
3	gene	111.78949	111.79110	positive	MGI_C57BL6J_5663042	Gm42905	ENSEMBL:ENSMUSG00000105882	MGI:5663042	unclassified gene	predicted gene 42905
3	pseudogene	111.80944	111.80983	negative	MGI_C57BL6J_5663991	Gm43854	ENSEMBL:ENSMUSG00000104711	MGI:5663991	pseudogene	predicted gene 43854
3	gene	111.88190	112.08200	positive	MGI_C57BL6J_3779614	Gm6602	NCBI_Gene:625585,ENSEMBL:ENSMUSG00000104543	MGI:3779614	lncRNA gene	predicted gene 6602
3	gene	112.19891	112.19904	negative	MGI_C57BL6J_5455296	Gm25519	ENSEMBL:ENSMUSG00000089017	MGI:5455296	snoRNA gene	predicted gene, 25519
3	pseudogene	112.20271	112.20301	negative	MGI_C57BL6J_5663990	Gm43853	ENSEMBL:ENSMUSG00000105507	MGI:5663990	pseudogene	predicted gene 43853
3	pseudogene	112.30235	112.30325	positive	MGI_C57BL6J_3646906	Gm4859	NCBI_Gene:229746,ENSEMBL:ENSMUSG00000105077	MGI:3646906	pseudogene	predicted gene 4859
3	pseudogene	112.33091	112.33178	negative	MGI_C57BL6J_3647781	Gm9317	NCBI_Gene:668717,ENSEMBL:ENSMUSG00000105073	MGI:3647781	pseudogene	predicted gene 9317
3	pseudogene	112.59156	112.59195	positive	MGI_C57BL6J_5662663	Gm42526	ENSEMBL:ENSMUSG00000105785	MGI:5662663	pseudogene	predicted gene 42526
3	pseudogene	112.76681	112.76701	negative	MGI_C57BL6J_5663724	Gm43587	ENSEMBL:ENSMUSG00000106666	MGI:5663724	pseudogene	predicted gene 43587
3	pseudogene	113.01950	113.02303	positive	MGI_C57BL6J_3051682	Utp14b-ps1	NCBI_Gene:383905,ENSEMBL:ENSMUSG00000105588	MGI:3051682	pseudogene	UTP14B small subunit processome component, pseudogene 1
3	pseudogene	113.05246	113.05428	negative	MGI_C57BL6J_3644344	Gm5548	NCBI_Gene:102632213,ENSEMBL:ENSMUSG00000045952	MGI:3644344	pseudogene	predicted pseudogene 5548
3	pseudogene	113.05580	113.05662	negative	MGI_C57BL6J_5618687	Gm38395	NCBI_Gene:100416050,ENSEMBL:ENSMUSG00000105665	MGI:5618687	pseudogene	predicted gene, 38395
3	pseudogene	113.14766	113.15673	negative	MGI_C57BL6J_104547	Amy2b	NCBI_Gene:545562,ENSEMBL:ENSMUSG00000083079	MGI:104547	pseudogene	amylase 2b
3	pseudogene	113.18223	113.20670	negative	MGI_C57BL6J_104546	Amy2-ps1	NCBI_Gene:668723,ENSEMBL:ENSMUSG00000081506	MGI:104546	pseudogene	amylase 2, pseudogene 1
3	gene	113.24718	113.24770	positive	MGI_C57BL6J_1916346	1810008N23Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 1810008N23 gene
3	gene	113.24718	113.25884	negative	MGI_C57BL6J_88020	Amy2a5	NCBI_Gene:109959,ENSEMBL:ENSMUSG00000074268	MGI:88020	protein coding gene	amylase 2a5
3	gene	113.27984	113.29145	negative	MGI_C57BL6J_3711258	Amy2a4	NCBI_Gene:100043684,ENSEMBL:ENSMUSG00000096770	MGI:3711258	protein coding gene	amylase 2a4
3	gene	113.31245	113.32405	negative	MGI_C57BL6J_3714985	Amy2a3	NCBI_Gene:100043686,ENSEMBL:ENSMUSG00000093931	MGI:3714985	protein coding gene	amylase 2a3
3	gene	113.34505	113.35666	negative	MGI_C57BL6J_3711220	Amy2a2	NCBI_Gene:100043688,ENSEMBL:ENSMUSG00000096569	MGI:3711220	protein coding gene	amylase 2a2
3	gene	113.52809	113.53243	negative	MGI_C57BL6J_104548	Amy2a1	NCBI_Gene:100043207,ENSEMBL:ENSMUSG00000070360	MGI:104548	protein coding gene	amylase 2a1
3	gene	113.54344	113.54582	negative	MGI_C57BL6J_5826457	Gm46820	NCBI_Gene:108168892	MGI:5826457	lncRNA gene	predicted gene, 46820
3	gene	113.55571	113.60670	negative	MGI_C57BL6J_88019	Amy1	NCBI_Gene:11722,ENSEMBL:ENSMUSG00000074264	MGI:88019	protein coding gene	amylase 1, salivary
3	gene	113.60507	113.63015	negative	MGI_C57BL6J_1914475	Rnpc3	NCBI_Gene:67225,ENSEMBL:ENSMUSG00000027981	MGI:1914475	protein coding gene	RNA-binding region (RNP1, RRM) containing 3
3	gene	113.62985	113.63128	positive	MGI_C57BL6J_3698878	C530020B09Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA C530020B09 gene
3	pseudogene	113.63158	113.63219	negative	MGI_C57BL6J_5010139	Gm17954	NCBI_Gene:100416168,ENSEMBL:ENSMUSG00000105836	MGI:5010139	pseudogene	predicted gene, 17954
3	pseudogene	113.72865	113.72949	positive	MGI_C57BL6J_5009939	Gm17775	NCBI_Gene:100046591,ENSEMBL:ENSMUSG00000106454	MGI:5009939	pseudogene	predicted gene, 17775
3	pseudogene	113.85472	113.85638	positive	MGI_C57BL6J_5010348	Gm18163	NCBI_Gene:100416594,ENSEMBL:ENSMUSG00000106084	MGI:5010348	pseudogene	predicted gene, 18163
3	gene	114.03048	114.22076	positive	MGI_C57BL6J_88446	Col11a1	NCBI_Gene:12814,ENSEMBL:ENSMUSG00000027966	MGI:88446	protein coding gene	collagen, type XI, alpha 1
3	pseudogene	114.54442	114.54477	negative	MGI_C57BL6J_5663886	Gm43749	ENSEMBL:ENSMUSG00000106452	MGI:5663886	pseudogene	predicted gene 43749
3	gene	114.82415	114.82429	negative	MGI_C57BL6J_5453527	Gm23750	ENSEMBL:ENSMUSG00000077410	MGI:5453527	snoRNA gene	predicted gene, 23750
3	pseudogene	114.82802	114.82867	negative	MGI_C57BL6J_5011332	Gm19147	NCBI_Gene:100418337,ENSEMBL:ENSMUSG00000105225	MGI:5011332	pseudogene	predicted gene, 19147
3	gene	114.90408	115.12576	positive	MGI_C57BL6J_2387329	Olfm3	NCBI_Gene:229759,ENSEMBL:ENSMUSG00000027965	MGI:2387329	protein coding gene	olfactomedin 3
3	pseudogene	115.17162	115.17212	negative	MGI_C57BL6J_5010614	Gm18429	NCBI_Gene:100417157,ENSEMBL:ENSMUSG00000106510	MGI:5010614	pseudogene	predicted gene, 18429
3	gene	115.39155	115.39168	positive	MGI_C57BL6J_5452114	Gm22337	ENSEMBL:ENSMUSG00000088346	MGI:5452114	snoRNA gene	predicted gene, 22337
3	gene	115.48402	115.48414	negative	MGI_C57BL6J_5455124	Gm25347	ENSEMBL:ENSMUSG00000080676	MGI:5455124	miRNA gene	predicted gene, 25347
3	pseudogene	115.51858	115.51901	positive	MGI_C57BL6J_5663806	Gm43669	ENSEMBL:ENSMUSG00000105829	MGI:5663806	pseudogene	predicted gene 43669
3	gene	115.63669	115.64173	negative	MGI_C57BL6J_5623009	Gm40124	NCBI_Gene:105244531	MGI:5623009	lncRNA gene	predicted gene, 40124
3	gene	115.71043	115.71507	negative	MGI_C57BL6J_1096355	S1pr1	NCBI_Gene:13609,ENSEMBL:ENSMUSG00000045092	MGI:1096355	protein coding gene	sphingosine-1-phosphate receptor 1
3	gene	115.71515	115.71673	positive	MGI_C57BL6J_3642568	Gm9889	ENSEMBL:ENSMUSG00000052769	MGI:3642568	lncRNA gene	predicted gene 9889
3	gene	115.88158	115.88813	negative	MGI_C57BL6J_1915411	A930005H10Rik	NCBI_Gene:68161,ENSEMBL:ENSMUSG00000054426	MGI:1915411	lncRNA gene	RIKEN cDNA A930005H10 gene
3	gene	115.88784	115.93436	positive	MGI_C57BL6J_1916990	Dph5	NCBI_Gene:69740,ENSEMBL:ENSMUSG00000033554	MGI:1916990	protein coding gene	diphthamide biosynthesis 5
3	gene	115.88926	115.89227	positive	MGI_C57BL6J_2442378	A230060L02Rik	NA	NA	unclassified gene	RIKEN cDNA A230060L02 gene
3	gene	115.91037	115.91053	positive	MGI_C57BL6J_5662824	Gm42687	ENSEMBL:ENSMUSG00000105108	MGI:5662824	unclassified gene	predicted gene 42687
3	gene	115.91381	115.91406	negative	MGI_C57BL6J_5663244	Gm43107	ENSEMBL:ENSMUSG00000105017	MGI:5663244	unclassified gene	predicted gene 43107
3	gene	115.91389	115.91418	positive	MGI_C57BL6J_5663245	Gm43108	ENSEMBL:ENSMUSG00000104803	MGI:5663245	unclassified gene	predicted gene 43108
3	gene	115.93897	116.00741	negative	MGI_C57BL6J_1913750	Slc30a7	NCBI_Gene:66500,ENSEMBL:ENSMUSG00000054414	MGI:1913750	protein coding gene	solute carrier family 30 (zinc transporter), member 7
3	pseudogene	115.94248	115.94312	positive	MGI_C57BL6J_5663243	Gm43106	ENSEMBL:ENSMUSG00000104723	MGI:5663243	pseudogene	predicted gene 43106
3	pseudogene	115.94310	115.94426	positive	MGI_C57BL6J_3779621	Gm6649	NCBI_Gene:626061,ENSEMBL:ENSMUSG00000105645	MGI:3779621	pseudogene	predicted gene 6649
3	gene	115.97990	115.97996	positive	MGI_C57BL6J_3837039	Mir669n	miRBase:MI0009951,NCBI_Gene:100316705,ENSEMBL:ENSMUSG00000089261	MGI:3837039	miRNA gene	microRNA 669n
3	gene	116.00745	116.02902	positive	MGI_C57BL6J_1889574	Extl2	NCBI_Gene:58193,ENSEMBL:ENSMUSG00000027963	MGI:1889574	protein coding gene	exostoses (multiple)-like 2
3	gene	116.06579	116.06592	negative	MGI_C57BL6J_5456121	Gm26344	ENSEMBL:ENSMUSG00000077741	MGI:5456121	snoRNA gene	predicted gene, 26344
3	gene	116.09359	116.10237	positive	MGI_C57BL6J_5590543	Gm31384	NCBI_Gene:102633598	MGI:5590543	lncRNA gene	predicted gene, 31384
3	gene	116.10995	116.12969	negative	MGI_C57BL6J_98926	Vcam1	NCBI_Gene:22329,ENSEMBL:ENSMUSG00000027962	MGI:98926	protein coding gene	vascular cell adhesion molecule 1
3	gene	116.12845	116.14102	positive	MGI_C57BL6J_5663246	Gm43109	ENSEMBL:ENSMUSG00000104653	MGI:5663246	lncRNA gene	predicted gene 43109
3	gene	116.13494	116.14914	positive	MGI_C57BL6J_1924313	5330425B07Rik	NCBI_Gene:102633677,ENSEMBL:ENSMUSG00000105729	MGI:1924313	lncRNA gene	RIKEN cDNA 5330425B07 gene
3	gene	116.15048	116.16582	positive	MGI_C57BL6J_5477038	Gm26544	NCBI_Gene:102633872,ENSEMBL:ENSMUSG00000097362	MGI:5477038	lncRNA gene	predicted gene, 26544
3	gene	116.19820	116.20359	positive	MGI_C57BL6J_5590810	Gm31651	NCBI_Gene:102633953,ENSEMBL:ENSMUSG00000104607	MGI:5590810	lncRNA gene	predicted gene, 31651
3	gene	116.24965	116.25350	negative	MGI_C57BL6J_1927653	Gpr88	NCBI_Gene:64378,ENSEMBL:ENSMUSG00000068696	MGI:1927653	protein coding gene	G-protein coupled receptor 88
3	gene	116.25794	116.26998	positive	MGI_C57BL6J_5826476	Gm46839	NCBI_Gene:108168922	MGI:5826476	lncRNA gene	predicted gene, 46839
3	gene	116.27255	116.42875	negative	MGI_C57BL6J_2442676	Cdc14a	NCBI_Gene:229776,ENSEMBL:ENSMUSG00000033502	MGI:2442676	protein coding gene	CDC14 cell division cycle 14A
3	gene	116.35010	116.35289	positive	MGI_C57BL6J_5579857	Gm29151	ENSEMBL:ENSMUSG00000106005	MGI:5579857	lncRNA gene	predicted gene 29151
3	gene	116.42415	116.43543	positive	MGI_C57BL6J_5623010	Gm40125	NCBI_Gene:105244532	MGI:5623010	lncRNA gene	predicted gene, 40125
3	gene	116.44839	116.44856	negative	MGI_C57BL6J_5452138	Gm22361	ENSEMBL:ENSMUSG00000089060	MGI:5452138	snRNA gene	predicted gene, 22361
3	gene	116.46662	116.46671	positive	MGI_C57BL6J_5456135	Gm26358	ENSEMBL:ENSMUSG00000088840	MGI:5456135	snoRNA gene	predicted gene, 26358
3	gene	116.48896	116.50821	negative	MGI_C57BL6J_1913618	Rtca	NCBI_Gene:66368,ENSEMBL:ENSMUSG00000000339	MGI:1913618	protein coding gene	RNA 3’-terminal phosphate cyclase
3	gene	116.48897	116.49336	positive	MGI_C57BL6J_5477024	Gm26530	ENSEMBL:ENSMUSG00000097737	MGI:5477024	lncRNA gene	predicted gene, 26530
3	gene	116.51307	116.54998	positive	MGI_C57BL6J_105386	Dbt	NCBI_Gene:13171,ENSEMBL:ENSMUSG00000000340	MGI:105386	protein coding gene	dihydrolipoamide branched chain transacylase E2
3	pseudogene	116.52731	116.52870	negative	MGI_C57BL6J_3782779	Gm4596	NCBI_Gene:100043702,ENSEMBL:ENSMUSG00000082394	MGI:3782779	pseudogene	predicted gene 4596
3	gene	116.53215	116.53259	positive	MGI_C57BL6J_5663788	Gm43651	ENSEMBL:ENSMUSG00000105992	MGI:5663788	unclassified gene	predicted gene 43651
3	pseudogene	116.56062	116.56155	negative	MGI_C57BL6J_3708640	Gm9761	NCBI_Gene:100043705,ENSEMBL:ENSMUSG00000034437	MGI:3708640	pseudogene	predicted gene 9761
3	gene	116.56295	116.58313	positive	MGI_C57BL6J_1924557	Lrrc39	NCBI_Gene:109245,ENSEMBL:ENSMUSG00000027961	MGI:1924557	protein coding gene	leucine rich repeat containing 39
3	gene	116.57206	116.57442	negative	MGI_C57BL6J_5663077	Gm42940	ENSEMBL:ENSMUSG00000106025	MGI:5663077	unclassified gene	predicted gene 42940
3	gene	116.57664	116.61459	negative	MGI_C57BL6J_1925219	Trmt13	NCBI_Gene:229780,ENSEMBL:ENSMUSG00000033439	MGI:1925219	protein coding gene	tRNA methyltransferase 13
3	gene	116.59496	116.63100	positive	MGI_C57BL6J_1920026	Sass6	NCBI_Gene:72776,ENSEMBL:ENSMUSG00000027959	MGI:1920026	protein coding gene	SAS-6 centriolar assembly protein
3	gene	116.62917	116.63098	negative	MGI_C57BL6J_5663030	Gm42893	ENSEMBL:ENSMUSG00000106415	MGI:5663030	lncRNA gene	predicted gene 42893
3	gene	116.63116	116.66269	negative	MGI_C57BL6J_1201609	Mfsd14a	NCBI_Gene:15247,ENSEMBL:ENSMUSG00000089911	MGI:1201609	protein coding gene	major facilitator superfamily domain containing 14A
3	gene	116.63167	116.63221	positive	MGI_C57BL6J_5662594	Gm42457	ENSEMBL:ENSMUSG00000105339	MGI:5662594	lncRNA gene	predicted gene 42457
3	gene	116.64190	116.68126	negative	MGI_C57BL6J_5663328	Gm43191	ENSEMBL:ENSMUSG00000105103	MGI:5663328	protein coding gene	predicted gene 43191
3	gene	116.66373	116.66415	positive	MGI_C57BL6J_1925434	4930512P04Rik	ENSEMBL:ENSMUSG00000106125	MGI:1925434	lncRNA gene	RIKEN cDNA 4930512P04 gene
3	gene	116.66947	116.71374	negative	MGI_C57BL6J_1917648	Slc35a3	NCBI_Gene:229782,ENSEMBL:ENSMUSG00000027957	MGI:1917648	protein coding gene	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
3	gene	116.69039	116.69338	negative	MGI_C57BL6J_5623011	Gm40126	NCBI_Gene:105244533	MGI:5623011	lncRNA gene	predicted gene, 40126
3	gene	116.74000	116.80817	negative	MGI_C57BL6J_1924809	Agl	NCBI_Gene:77559,ENSEMBL:ENSMUSG00000033400	MGI:1924809	protein coding gene	amylo-1,6-glucosidase, 4-alpha-glucanotransferase
3	gene	116.81882	116.81898	positive	MGI_C57BL6J_5663657	Gm43520	ENSEMBL:ENSMUSG00000106128	MGI:5663657	unclassified gene	predicted gene 43520
3	gene	116.82229	116.82255	negative	MGI_C57BL6J_5663658	Gm43521	ENSEMBL:ENSMUSG00000106511	MGI:5663658	unclassified gene	predicted gene 43521
3	gene	116.82300	116.82979	positive	MGI_C57BL6J_5623012	Gm40127	NCBI_Gene:105244534	MGI:5623012	lncRNA gene	predicted gene, 40127
3	gene	116.83536	116.84151	negative	MGI_C57BL6J_5623013	Gm40128	NCBI_Gene:105244535	MGI:5623013	lncRNA gene	predicted gene, 40128
3	pseudogene	116.84458	116.84496	positive	MGI_C57BL6J_5588895	Gm29736	NCBI_Gene:101055867,ENSEMBL:ENSMUSG00000105250	MGI:5588895	pseudogene	predicted gene, 29736
3	pseudogene	116.84695	116.84732	positive	MGI_C57BL6J_5663679	Gm43542	ENSEMBL:ENSMUSG00000105241	MGI:5663679	pseudogene	predicted gene 43542
3	gene	116.85946	116.90818	positive	MGI_C57BL6J_108076	Frrs1	NCBI_Gene:20321,ENSEMBL:ENSMUSG00000033386	MGI:108076	protein coding gene	ferric-chelate reductase 1
3	gene	116.86947	116.87083	positive	MGI_C57BL6J_1924370	9030201C23Rik	NA	NA	unclassified gene	RIKEN cDNA 9030201C23 gene
3	gene	116.91826	116.96899	negative	MGI_C57BL6J_2148896	Palmd	NCBI_Gene:114301,ENSEMBL:ENSMUSG00000033377	MGI:2148896	protein coding gene	palmdelphin
3	gene	116.94036	116.94433	negative	MGI_C57BL6J_5663029	Gm42892	ENSEMBL:ENSMUSG00000106073	MGI:5663029	unclassified gene	predicted gene 42892
3	gene	116.95311	116.96008	positive	MGI_C57BL6J_5591307	Gm32148	NCBI_Gene:102634607	MGI:5591307	lncRNA gene	predicted gene, 32148
3	gene	116.96827	116.98441	positive	MGI_C57BL6J_1921904	4930455H04Rik	NCBI_Gene:74654,ENSEMBL:ENSMUSG00000080907	MGI:1921904	protein coding gene	RIKEN cDNA 4930455H04 gene
3	pseudogene	116.99881	116.99959	negative	MGI_C57BL6J_3643926	Gm9332	NCBI_Gene:668749,ENSEMBL:ENSMUSG00000105221	MGI:3643926	pseudogene	predicted gene 9332
3	gene	117.06052	117.07776	negative	MGI_C57BL6J_1920612	1700061I17Rik	NCBI_Gene:433646,ENSEMBL:ENSMUSG00000028009	MGI:1920612	lncRNA gene	RIKEN cDNA 1700061I17 gene
3	pseudogene	117.07411	117.07482	negative	MGI_C57BL6J_5010081	Gm17896	NCBI_Gene:100416059	MGI:5010081	pseudogene	predicted gene, 17896
3	pseudogene	117.10083	117.10151	negative	MGI_C57BL6J_5010615	Gm18430	NCBI_Gene:100417158,ENSEMBL:ENSMUSG00000106343	MGI:5010615	pseudogene	predicted gene, 18430
3	pseudogene	117.17592	117.17676	positive	MGI_C57BL6J_3780039	Gm9632	NCBI_Gene:674908,ENSEMBL:ENSMUSG00000106314	MGI:3780039	pseudogene	predicted gene 9632
3	pseudogene	117.22292	117.22364	negative	MGI_C57BL6J_5011428	Gm19243	NCBI_Gene:100462736,ENSEMBL:ENSMUSG00000105914	MGI:5011428	pseudogene	predicted gene, 19243
3	gene	117.23459	117.25625	positive	MGI_C57BL6J_5591375	Gm32216	NCBI_Gene:102634688	MGI:5591375	lncRNA gene	predicted gene, 32216
3	gene	117.25099	117.26315	negative	MGI_C57BL6J_5623015	Gm40130	NCBI_Gene:105244537	MGI:5623015	lncRNA gene	predicted gene, 40130
3	gene	117.25513	117.25582	positive	MGI_C57BL6J_5663028	Gm42891	ENSEMBL:ENSMUSG00000106342	MGI:5663028	lncRNA gene	predicted gene 42891
3	gene	117.31914	117.36088	negative	MGI_C57BL6J_106530	Plppr4	NCBI_Gene:229791,ENSEMBL:ENSMUSG00000044667	MGI:106530	protein coding gene	phospholipid phosphatase related 4
3	gene	117.32294	117.32300	positive	MGI_C57BL6J_5452185	Gm22408	ENSEMBL:ENSMUSG00000092666	MGI:5452185	miRNA gene	predicted gene, 22408
3	gene	117.57104	117.68951	positive	MGI_C57BL6J_1923019	Plppr5	NCBI_Gene:75769,ENSEMBL:ENSMUSG00000033342	MGI:1923019	protein coding gene	phospholipid phosphatase related 5
3	gene	117.78150	117.86894	negative	MGI_C57BL6J_1923811	Snx7	NCBI_Gene:76561,ENSEMBL:ENSMUSG00000028007	MGI:1923811	protein coding gene	sorting nexin 7
3	gene	117.84855	117.84865	negative	MGI_C57BL6J_5454588	Gm24811	ENSEMBL:ENSMUSG00000093054	MGI:5454588	miRNA gene	predicted gene, 24811
3	pseudogene	117.88857	117.88902	negative	MGI_C57BL6J_3782502	Gm4321	NCBI_Gene:100043260,ENSEMBL:ENSMUSG00000104678	MGI:3782502	pseudogene	predicted gene 4321
3	gene	117.96506	117.99325	positive	MGI_C57BL6J_5591503	Gm32344	NCBI_Gene:102634860	MGI:5591503	lncRNA gene	predicted gene, 32344
3	gene	117.96913	117.97353	positive	MGI_C57BL6J_1918117	4921521D15Rik	ENSEMBL:ENSMUSG00000104703	MGI:1918117	lncRNA gene	RIKEN cDNA 4921521D15 gene
3	gene	118.43032	118.53964	positive	MGI_C57BL6J_5477365	Gm26871	NCBI_Gene:102634933,ENSEMBL:ENSMUSG00000097311	MGI:5477365	lncRNA gene	predicted gene, 26871
3	gene	118.43386	118.43393	positive	MGI_C57BL6J_2676822	Mir137	miRBase:MI0000163,NCBI_Gene:387155,ENSEMBL:ENSMUSG00000065569	MGI:2676822	miRNA gene	microRNA 137
3	gene	118.43472	118.43483	positive	MGI_C57BL6J_5453932	Gm24155	ENSEMBL:ENSMUSG00000093000	MGI:5453932	miRNA gene	predicted gene, 24155
3	gene	118.43477	118.43600	positive	MGI_C57BL6J_3642633	Gm9916	ENSEMBL:ENSMUSG00000104178	MGI:3642633	lncRNA gene	predicted gene 9916
3	gene	118.52615	118.52827	positive	MGI_C57BL6J_5611001	Gm37773	ENSEMBL:ENSMUSG00000104033	MGI:5611001	unclassified gene	predicted gene, 37773
3	gene	118.53088	118.53501	positive	MGI_C57BL6J_5611156	Gm37928	ENSEMBL:ENSMUSG00000104362	MGI:5611156	unclassified gene	predicted gene, 37928
3	gene	118.53702	118.54053	positive	MGI_C57BL6J_5591603	Gm32444	ENSEMBL:ENSMUSG00000102729	MGI:5591603	unclassified non-coding RNA gene	predicted gene, 32444
3	gene	118.56211	119.43292	positive	MGI_C57BL6J_2139667	Dpyd	NCBI_Gene:99586,ENSEMBL:ENSMUSG00000033308	MGI:2139667	protein coding gene	dihydropyrimidine dehydrogenase
3	gene	118.86824	118.87048	positive	MGI_C57BL6J_5663547	Gm43410	ENSEMBL:ENSMUSG00000106542	MGI:5663547	unclassified gene	predicted gene 43410
3	gene	119.43724	119.44043	negative	MGI_C57BL6J_5591736	Gm32577	NCBI_Gene:102635174	MGI:5591736	lncRNA gene	predicted gene, 32577
3	gene	119.45680	119.47510	negative	MGI_C57BL6J_5591791	Gm32632	NCBI_Gene:102635242	MGI:5591791	lncRNA gene	predicted gene, 32632
3	gene	119.48375	119.49004	negative	MGI_C57BL6J_5623016	Gm40131	NCBI_Gene:105244538	MGI:5623016	lncRNA gene	predicted gene, 40131
3	gene	119.63874	119.63887	negative	MGI_C57BL6J_5453209	Gm23432	ENSEMBL:ENSMUSG00000087806	MGI:5453209	snoRNA gene	predicted gene, 23432
3	pseudogene	119.70951	119.70991	positive	MGI_C57BL6J_3782515	Gm4332	NCBI_Gene:100043278,ENSEMBL:ENSMUSG00000106037	MGI:3782515	pseudogene	predicted gene 4332
3	gene	119.71874	119.78447	negative	MGI_C57BL6J_1860489	Ptbp2	NCBI_Gene:56195,ENSEMBL:ENSMUSG00000028134	MGI:1860489	protein coding gene	polypyrimidine tract binding protein 2
3	gene	119.72775	119.72979	negative	MGI_C57BL6J_5663437	Gm43300	ENSEMBL:ENSMUSG00000105572	MGI:5663437	unclassified gene	predicted gene 43300
3	gene	119.74321	119.74645	negative	MGI_C57BL6J_5662801	Gm42664	ENSEMBL:ENSMUSG00000106099	MGI:5662801	lncRNA gene	predicted gene 42664
3	pseudogene	119.75734	119.75751	positive	MGI_C57BL6J_5662941	Gm42804	ENSEMBL:ENSMUSG00000106075	MGI:5662941	pseudogene	predicted gene 42804
3	gene	119.78382	119.78495	positive	MGI_C57BL6J_5621433	Gm38548	NCBI_Gene:102641335	MGI:5621433	lncRNA gene	predicted gene, 38548
3	gene	119.83194	119.83206	positive	MGI_C57BL6J_5454521	Gm24744	ENSEMBL:ENSMUSG00000094593	MGI:5454521	miRNA gene	predicted gene, 24744
3	gene	119.83790	119.83802	positive	MGI_C57BL6J_5455914	Gm26137	ENSEMBL:ENSMUSG00000096196	MGI:5455914	miRNA gene	predicted gene, 26137
3	pseudogene	119.96873	119.96954	positive	MGI_C57BL6J_5010569	Gm18384	NCBI_Gene:100417046,ENSEMBL:ENSMUSG00000104726	MGI:5010569	pseudogene	predicted gene, 18384
3	gene	120.31788	120.31799	negative	MGI_C57BL6J_5453510	Gm23733	ENSEMBL:ENSMUSG00000065684	MGI:5453510	snRNA gene	predicted gene, 23733
3	gene	120.45433	120.88673	negative	MGI_C57BL6J_2444638	6530403H02Rik	NCBI_Gene:320739,ENSEMBL:ENSMUSG00000098097	MGI:2444638	lncRNA gene	RIKEN cDNA 6530403H02 gene
3	gene	120.60997	120.61009	negative	MGI_C57BL6J_5454790	Gm25013	ENSEMBL:ENSMUSG00000089027	MGI:5454790	snoRNA gene	predicted gene, 25013
3	pseudogene	120.73572	120.73956	negative	MGI_C57BL6J_5663064	Gm42927	ENSEMBL:ENSMUSG00000105207	MGI:5663064	pseudogene	predicted gene 42927
3	gene	120.93213	120.93471	negative	MGI_C57BL6J_5623018	Gm40133	NCBI_Gene:105244540	MGI:5623018	lncRNA gene	predicted gene, 40133
3	gene	121.02049	121.02078	negative	MGI_C57BL6J_5663581	Gm43444	ENSEMBL:ENSMUSG00000105243	MGI:5663581	unclassified gene	predicted gene 43444
3	gene	121.02909	121.02978	negative	MGI_C57BL6J_5663063	Gm42926	ENSEMBL:ENSMUSG00000104749	MGI:5663063	unclassified gene	predicted gene 42926
3	gene	121.15540	121.17178	negative	MGI_C57BL6J_1920420	Rwdd3	NCBI_Gene:66568,ENSEMBL:ENSMUSG00000028133	MGI:1920420	protein coding gene	RWD domain containing 3
3	gene	121.16866	121.17128	positive	MGI_C57BL6J_3642648	Gm10652	ENSEMBL:ENSMUSG00000106329	MGI:3642648	unclassified gene	predicted gene 10652
3	pseudogene	121.17991	121.18111	negative	MGI_C57BL6J_3643595	Gm5710	NCBI_Gene:435752,ENSEMBL:ENSMUSG00000098042	MGI:3643595	pseudogene	predicted gene 5710

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
10	gene	66.29328	66.51251	negative	MGI_C57BL6J_5623562	Gm40677	NCBI_Gene:105245190	MGI:5623562	lncRNA gene	predicted gene, 40677
10	gene	66.48355	66.48368	positive	MGI_C57BL6J_5452371	Gm22594	ENSEMBL:ENSMUSG00000077439	MGI:5452371	snoRNA gene	predicted gene, 22594
10	gene	66.64092	66.64186	positive	MGI_C57BL6J_5578845	Gm28139	ENSEMBL:ENSMUSG00000101338	MGI:5578845	lncRNA gene	predicted gene 28139
10	pseudogene	66.69134	66.69161	negative	MGI_C57BL6J_6097127	Gm47894	ENSEMBL:ENSMUSG00000112247	MGI:6097127	pseudogene	predicted gene, 47894
10	gene	66.69824	66.70596	positive	MGI_C57BL6J_5590340	Gm31181	ENSEMBL:ENSMUSG00000112202	MGI:5590340	lncRNA gene	predicted gene, 31181
10	pseudogene	66.74029	66.74116	negative	MGI_C57BL6J_5010962	Gm18777	NCBI_Gene:100417714,ENSEMBL:ENSMUSG00000112159	MGI:5010962	pseudogene	predicted gene, 18777
10	gene	66.74093	66.74559	negative	MGI_C57BL6J_5590399	Gm31240	NCBI_Gene:102633406	MGI:5590399	lncRNA gene	predicted gene, 31240
10	gene	66.75945	66.76210	positive	MGI_C57BL6J_6097128	Gm47895	ENSEMBL:ENSMUSG00000112383	MGI:6097128	lncRNA gene	predicted gene, 47895
10	gene	66.80395	66.82967	negative	MGI_C57BL6J_5623563	Gm40678	NCBI_Gene:105245191	MGI:5623563	lncRNA gene	predicted gene, 40678
10	gene	66.80984	66.82235	positive	MGI_C57BL6J_6097130	Gm47896	ENSEMBL:ENSMUSG00000112425	MGI:6097130	lncRNA gene	predicted gene, 47896
10	gene	66.82417	66.82740	positive	MGI_C57BL6J_6097132	Gm47897	ENSEMBL:ENSMUSG00000112514	MGI:6097132	lncRNA gene	predicted gene, 47897
10	gene	66.83214	66.91156	negative	MGI_C57BL6J_5590575	Gm31416	NCBI_Gene:102633633	MGI:5590575	lncRNA gene	predicted gene, 31416
10	gene	66.83760	66.83950	positive	MGI_C57BL6J_6097137	Gm47900	ENSEMBL:ENSMUSG00000112379	MGI:6097137	lncRNA gene	predicted gene, 47900
10	gene	66.88967	66.89161	negative	MGI_C57BL6J_6097142	Gm47903	ENSEMBL:ENSMUSG00000112267	MGI:6097142	lncRNA gene	predicted gene, 47903
10	gene	66.91219	66.92062	negative	MGI_C57BL6J_1915738	1110002J07Rik	NCBI_Gene:68488,ENSEMBL:ENSMUSG00000097134	MGI:1915738	lncRNA gene	RIKEN cDNA 1110002J07 gene
10	gene	66.92030	66.92360	positive	MGI_C57BL6J_5477070	Gm26576	ENSEMBL:ENSMUSG00000097921	MGI:5477070	lncRNA gene	predicted gene, 26576
10	gene	67.00502	67.04133	positive	MGI_C57BL6J_5590922	Gm31763	NCBI_Gene:102634101,ENSEMBL:ENSMUSG00000112925	MGI:5590922	lncRNA gene	predicted gene, 31763
10	gene	67.00919	67.09699	negative	MGI_C57BL6J_88930	Reep3	NCBI_Gene:28193,ENSEMBL:ENSMUSG00000019873	MGI:88930	protein coding gene	receptor accessory protein 3
10	gene	67.09613	67.25633	positive	MGI_C57BL6J_1918614	Jmjd1c	NCBI_Gene:108829,ENSEMBL:ENSMUSG00000037876	MGI:1918614	protein coding gene	jumonji domain containing 1C
10	gene	67.12053	67.12478	negative	MGI_C57BL6J_5825865	Gm46228	NCBI_Gene:108167815	MGI:5825865	lncRNA gene	predicted gene, 46228
10	gene	67.17778	67.18395	positive	MGI_C57BL6J_2443021	A630074N13Rik	NA	NA	unclassified gene	RIKEN cDNA A630074N13 gene
10	gene	67.23586	67.23596	negative	MGI_C57BL6J_5456136	Gm26359	ENSEMBL:ENSMUSG00000089498	MGI:5456136	snRNA gene	predicted gene, 26359
10	gene	67.26669	67.28535	negative	MGI_C57BL6J_1354950	Nrbf2	NCBI_Gene:641340,ENSEMBL:ENSMUSG00000075000	MGI:1354950	protein coding gene	nuclear receptor binding factor 2
10	gene	67.28543	67.29316	positive	MGI_C57BL6J_5825837	Gm46200	NCBI_Gene:108167782	MGI:5825837	lncRNA gene	predicted gene, 46200
10	gene	67.29741	67.41893	positive	MGI_C57BL6J_6155108	Gm49454	ENSEMBL:ENSMUSG00000112314	MGI:6155108	lncRNA gene	predicted gene, 49454
10	gene	67.30440	67.31363	positive	MGI_C57BL6J_5825866	Gm46229	NCBI_Gene:108167816	MGI:5825866	lncRNA gene	predicted gene, 46229
10	pseudogene	67.34880	67.34896	negative	MGI_C57BL6J_6096511	Gm47516	ENSEMBL:ENSMUSG00000111908	MGI:6096511	pseudogene	predicted gene, 47516
10	gene	67.34998	67.39721	positive	MGI_C57BL6J_5825867	Gm46230	NCBI_Gene:108167817	MGI:5825867	lncRNA gene	predicted gene, 46230
10	gene	67.39968	67.41929	positive	MGI_C57BL6J_5591121	Gm31962	NCBI_Gene:102634362	MGI:5591121	lncRNA gene	predicted gene, 31962
10	gene	67.42005	67.42533	positive	MGI_C57BL6J_5591182	Gm32023	NCBI_Gene:102634442,ENSEMBL:ENSMUSG00000112848	MGI:5591182	lncRNA gene	predicted gene, 32023
10	gene	67.43609	67.44343	negative	MGI_C57BL6J_6096535	Gm47531	ENSEMBL:ENSMUSG00000112726	MGI:6096535	lncRNA gene	predicted gene, 47531
10	gene	67.48439	67.48605	negative	MGI_C57BL6J_1923024	4930403L11Rik	NA	NA	unclassified gene	RIKEN cDNA 4930403L11 gene
10	gene	67.49636	67.53534	negative	MGI_C57BL6J_5591414	Gm32255	NCBI_Gene:102634748,ENSEMBL:ENSMUSG00000112120	MGI:5591414	lncRNA gene	predicted gene, 32255
10	gene	67.50114	67.50314	negative	MGI_C57BL6J_5623564	Gm40679	NCBI_Gene:105245192	MGI:5623564	lncRNA gene	predicted gene, 40679
10	gene	67.50912	67.51154	positive	MGI_C57BL6J_5591335	Gm32176	NCBI_Gene:102634639	MGI:5591335	lncRNA gene	predicted gene, 32176
10	gene	67.53445	67.54749	positive	MGI_C57BL6J_95296	Egr2	NCBI_Gene:13654,ENSEMBL:ENSMUSG00000037868	MGI:95296	protein coding gene	early growth response 2
10	gene	67.54451	67.54896	negative	MGI_C57BL6J_2685083	Ado	NCBI_Gene:211488,ENSEMBL:ENSMUSG00000057134	MGI:2685083	protein coding gene	2-aminoethanethiol (cysteamine) dioxygenase
10	gene	67.56763	67.57199	negative	MGI_C57BL6J_1922576	4930563J15Rik	NCBI_Gene:105245193,ENSEMBL:ENSMUSG00000112141	MGI:1922576	lncRNA gene	RIKEN cDNA 4930563J15 gene
10	gene	67.57028	67.59659	positive	MGI_C57BL6J_5591523	Gm32364	NCBI_Gene:102634888,ENSEMBL:ENSMUSG00000112558	MGI:5591523	lncRNA gene	predicted gene, 32364
10	gene	67.57204	67.57426	positive	MGI_C57BL6J_3642860	Gm10797	ENSEMBL:ENSMUSG00000074999	MGI:3642860	protein coding gene	predicted gene 10797
10	gene	67.66463	67.66744	positive	MGI_C57BL6J_5591674	Gm32515	NCBI_Gene:102635092,ENSEMBL:ENSMUSG00000112097	MGI:5591674	lncRNA gene	predicted gene, 32515
10	gene	67.69352	67.70392	positive	MGI_C57BL6J_5591597	Gm32438	NCBI_Gene:102634989	MGI:5591597	lncRNA gene	predicted gene, 32438
10	gene	67.70523	67.71064	positive	MGI_C57BL6J_5623565	Gm40680	NCBI_Gene:105245194	MGI:5623565	lncRNA gene	predicted gene, 40680
10	gene	67.70784	67.70947	positive	MGI_C57BL6J_6096606	Gm47574	ENSEMBL:ENSMUSG00000112396	MGI:6096606	unclassified gene	predicted gene, 47574
10	gene	67.70859	67.71804	negative	MGI_C57BL6J_1916765	1700030E10Rik	ENSEMBL:ENSMUSG00000112619	MGI:1916765	lncRNA gene	RIKEN cDNA 1700030E10 gene
10	gene	67.74915	67.77838	negative	MGI_C57BL6J_5623566	Gm40681	NCBI_Gene:105245195	MGI:5623566	lncRNA gene	predicted gene, 40681
10	gene	67.78555	67.78883	positive	MGI_C57BL6J_1922475	4930543I11Rik	NCBI_Gene:102635169,ENSEMBL:ENSMUSG00000112537	MGI:1922475	lncRNA gene	RIKEN cDNA 4930543I11 gene
10	gene	67.78575	67.83640	positive	MGI_C57BL6J_6215275	Gm49766	ENSEMBL:ENSMUSG00000116971	MGI:6215275	lncRNA gene	predicted gene, 49766
10	pseudogene	67.79273	67.79326	negative	MGI_C57BL6J_5588933	Gm29774	NCBI_Gene:101056081,ENSEMBL:ENSMUSG00000111956	MGI:5588933	pseudogene	predicted gene, 29774
10	gene	67.88610	67.91266	negative	MGI_C57BL6J_2143676	Zfp365	NCBI_Gene:216049,ENSEMBL:ENSMUSG00000037855	MGI:2143676	protein coding gene	zinc finger protein 365
10	gene	67.96248	67.97371	negative	MGI_C57BL6J_1922317	4930521O17Rik	NCBI_Gene:75067,ENSEMBL:ENSMUSG00000112899	MGI:1922317	lncRNA gene	RIKEN cDNA 4930521O17 gene
10	gene	67.97957	68.05974	positive	MGI_C57BL6J_2158417	Rtkn2	NCBI_Gene:170799,ENSEMBL:ENSMUSG00000037846	MGI:2158417	protein coding gene	rhotekin 2
10	gene	68.02545	68.02663	negative	MGI_C57BL6J_3801951	Gm16212	ENSEMBL:ENSMUSG00000086838	MGI:3801951	lncRNA gene	predicted gene 16212
10	gene	68.09252	68.27874	negative	MGI_C57BL6J_2175912	Arid5b	NCBI_Gene:71371,ENSEMBL:ENSMUSG00000019947	MGI:2175912	protein coding gene	AT rich interactive domain 5B (MRF1-like)
10	gene	68.31301	68.32698	positive	MGI_C57BL6J_6095801	Gm47078	ENSEMBL:ENSMUSG00000112275	MGI:6095801	lncRNA gene	predicted gene, 47078
10	gene	68.31906	68.32114	negative	MGI_C57BL6J_1922398	4930545H06Rik	NCBI_Gene:75148,ENSEMBL:ENSMUSG00000112157	MGI:1922398	lncRNA gene	RIKEN cDNA 4930545H06 gene
10	gene	68.32564	68.34030	negative	MGI_C57BL6J_5591907	Gm32748	NCBI_Gene:102635395	MGI:5591907	lncRNA gene	predicted gene, 32748
10	gene	68.38659	68.43979	positive	MGI_C57BL6J_5623568	Gm40683	NCBI_Gene:105245197	MGI:5623568	lncRNA gene	predicted gene, 40683
10	gene	68.43095	68.54192	negative	MGI_C57BL6J_1920537	Cabcoco1	NCBI_Gene:73287,ENSEMBL:ENSMUSG00000019945	MGI:1920537	protein coding gene	ciliary associated calcium binding coiled-coil 1
10	gene	68.53009	68.53394	positive	MGI_C57BL6J_5592031	Gm32872	NCBI_Gene:102635578,ENSEMBL:ENSMUSG00000112793	MGI:5592031	lncRNA gene	predicted gene, 32872
10	pseudogene	68.69150	68.69237	negative	MGI_C57BL6J_3647263	Gm7594	NCBI_Gene:665342,ENSEMBL:ENSMUSG00000112434	MGI:3647263	pseudogene	predicted gene 7594
10	gene	68.72365	68.78266	positive	MGI_C57BL6J_2143537	Tmem26	NCBI_Gene:327766,ENSEMBL:ENSMUSG00000060044	MGI:2143537	protein coding gene	transmembrane protein 26
10	gene	68.79890	68.82282	negative	MGI_C57BL6J_5592090	Gm32931	NCBI_Gene:102635644	MGI:5592090	lncRNA gene	predicted gene, 32931
10	gene	68.90280	68.90450	negative	MGI_C57BL6J_1920605	1700048P04Rik	ENSEMBL:ENSMUSG00000112333	MGI:1920605	lncRNA gene	RIKEN cDNA 1700048P04 gene
10	gene	69.02026	69.04451	negative	MGI_C57BL6J_5592194	Gm33035	NCBI_Gene:102635787,ENSEMBL:ENSMUSG00000112331	MGI:5592194	lncRNA gene	predicted gene, 33035
10	gene	69.07235	69.08988	negative	MGI_C57BL6J_5592289	Gm33130	NCBI_Gene:102635915	MGI:5592289	lncRNA gene	predicted gene, 33130
10	gene	69.09666	69.09787	negative	MGI_C57BL6J_6095844	Gm47107	ENSEMBL:ENSMUSG00000112083	MGI:6095844	lncRNA gene	predicted gene, 47107
10	gene	69.11245	69.11744	positive	MGI_C57BL6J_5623569	Gm40684	NCBI_Gene:105245198	MGI:5623569	lncRNA gene	predicted gene, 40684
10	gene	69.13288	69.13300	positive	MGI_C57BL6J_5453949	Gm24172	ENSEMBL:ENSMUSG00000077315	MGI:5453949	snoRNA gene	predicted gene, 24172
10	gene	69.14775	69.15113	negative	MGI_C57BL6J_5592422	Gm33263	NCBI_Gene:102636096,ENSEMBL:ENSMUSG00000111941	MGI:5592422	lncRNA gene	predicted gene, 33263
10	gene	69.15128	69.29179	positive	MGI_C57BL6J_1916538	Rhobtb1	NCBI_Gene:69288,ENSEMBL:ENSMUSG00000019944	MGI:1916538	protein coding gene	Rho-related BTB domain containing 1
10	gene	69.20946	69.21316	negative	MGI_C57BL6J_2444562	A930033H14Rik	NCBI_Gene:320700,ENSEMBL:ENSMUSG00000090622	MGI:2444562	protein coding gene	RIKEN cDNA A930033H14 gene
10	gene	69.31204	69.31542	positive	MGI_C57BL6J_5623570	Gm40685	NCBI_Gene:105245199,ENSEMBL:ENSMUSG00000112798	MGI:5623570	lncRNA gene	predicted gene, 40685
10	pseudogene	69.32520	69.32567	positive	MGI_C57BL6J_3780816	Rpl30-ps7	NCBI_Gene:100040182	MGI:3780816	pseudogene	ribosomal protein L30, pseudogene 7
10	gene	69.32636	69.32821	negative	MGI_C57BL6J_1921141	4930423B08Rik	NCBI_Gene:102636160	MGI:1921141	lncRNA gene	RIKEN cDNA 4930423B08 gene
10	gene	69.33515	69.35294	negative	MGI_C57BL6J_88351	Cdk1	NCBI_Gene:12534,ENSEMBL:ENSMUSG00000019942	MGI:88351	protein coding gene	cyclin-dependent kinase 1
10	pseudogene	69.37269	69.37331	negative	MGI_C57BL6J_6096016	Gm47211	ENSEMBL:ENSMUSG00000112509	MGI:6096016	pseudogene	predicted gene, 47211
10	gene	69.39877	69.60214	positive	MGI_C57BL6J_3036232	4833431D13Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 4833431D13 gene
10	gene	69.39877	70.02744	positive	MGI_C57BL6J_88026	Ank3	NCBI_Gene:11735,ENSEMBL:ENSMUSG00000069601	MGI:88026	protein coding gene	ankyrin 3, epithelial
10	pseudogene	69.42268	69.42375	negative	MGI_C57BL6J_5010821	Gm18636	NCBI_Gene:100417479,ENSEMBL:ENSMUSG00000111899	MGI:5010821	pseudogene	predicted gene, 18636
10	gene	69.43900	69.43974	negative	MGI_C57BL6J_1925199	A930011B18Rik	NA	NA	unclassified gene	RIKEN cDNA A930011B18 gene
10	gene	69.54109	69.55651	negative	MGI_C57BL6J_5592623	Gm33464	NCBI_Gene:102636382	MGI:5592623	lncRNA gene	predicted gene, 33464
10	pseudogene	69.56567	69.56693	negative	MGI_C57BL6J_5825868	Gm46231	NCBI_Gene:108167818,ENSEMBL:ENSMUSG00000112729	MGI:5825868	pseudogene	predicted gene, 46231
10	gene	69.68908	69.69018	positive	MGI_C57BL6J_1924544	9430064K01Rik	NA	NA	unclassified gene	RIKEN cDNA 9430064K01 gene
10	gene	69.86268	69.86639	negative	MGI_C57BL6J_5592575	Gm33416	NCBI_Gene:102636314	MGI:5592575	lncRNA gene	predicted gene, 33416
10	gene	69.90705	69.90931	negative	MGI_C57BL6J_5592520	Gm33361	NCBI_Gene:102636238	MGI:5592520	lncRNA gene	predicted gene, 33361
10	gene	69.90718	69.90798	positive	MGI_C57BL6J_1920163	2900006A17Rik	NA	NA	unclassified gene	RIKEN cDNA 2900006A17 gene
10	gene	70.09688	70.19320	positive	MGI_C57BL6J_1923801	Ccdc6	NCBI_Gene:76551,ENSEMBL:ENSMUSG00000048701	MGI:1923801	protein coding gene	coiled-coil domain containing 6
10	gene	70.20466	70.21971	positive	MGI_C57BL6J_1916813	Mrln	NCBI_Gene:69563,ENSEMBL:ENSMUSG00000019933	MGI:1916813	protein coding gene	myoregulin
10	gene	70.24510	70.28597	positive	MGI_C57BL6J_1914109	Slc16a9	NCBI_Gene:66859,ENSEMBL:ENSMUSG00000037762	MGI:1914109	protein coding gene	solute carrier family 16 (monocarboxylic acid transporters), member 9
10	gene	70.28423	70.28495	negative	MGI_C57BL6J_3779671	Gm7097	ENSEMBL:ENSMUSG00000089835	MGI:3779671	lncRNA gene	predicted gene 7097
10	pseudogene	70.28555	70.28818	negative	MGI_C57BL6J_3708538	Gm9877	ENSEMBL:ENSMUSG00000052426	MGI:3708538	pseudogene	predicted gene 9877
10	gene	70.28977	70.30845	positive	MGI_C57BL6J_5623572	Gm40687	NCBI_Gene:105245201	MGI:5623572	lncRNA gene	predicted gene, 40687
10	gene	70.29340	70.29406	positive	MGI_C57BL6J_5592863	Gm33704	NCBI_Gene:102636706	MGI:5592863	lncRNA gene	predicted gene, 33704
10	pseudogene	70.33830	70.33847	positive	MGI_C57BL6J_5012293	Gm20108	NCBI_Gene:102636776,ENSEMBL:ENSMUSG00000112676	MGI:5012293	pseudogene	predicted gene, 20108
10	gene	70.41246	70.41558	negative	MGI_C57BL6J_6097213	Gm47946	ENSEMBL:ENSMUSG00000112884	MGI:6097213	lncRNA gene	predicted gene, 47946
10	gene	70.44008	70.55874	positive	MGI_C57BL6J_1918971	Fam13c	NCBI_Gene:71721,ENSEMBL:ENSMUSG00000043259	MGI:1918971	protein coding gene	family with sequence similarity 13, member C
10	gene	70.50119	70.50150	negative	MGI_C57BL6J_5452097	Gm22320	ENSEMBL:ENSMUSG00000087774	MGI:5452097	unclassified non-coding RNA gene	predicted gene, 22320
10	pseudogene	70.50477	70.50734	negative	MGI_C57BL6J_5588942	Gm29783	NCBI_Gene:101056119,ENSEMBL:ENSMUSG00000112273	MGI:5588942	pseudogene	predicted gene, 29783
10	gene	70.55768	70.65596	negative	MGI_C57BL6J_1918161	Phyhipl	NCBI_Gene:70911,ENSEMBL:ENSMUSG00000037747	MGI:1918161	protein coding gene	phytanoyl-CoA hydroxylase interacting protein-like
10	gene	70.59978	70.68021	positive	MGI_C57BL6J_5825869	Gm46232	NCBI_Gene:108167819	MGI:5825869	lncRNA gene	predicted gene, 46232
10	gene	70.59983	70.60048	positive	MGI_C57BL6J_2143903	BB187676	NA	NA	unclassified gene	expressed sequence BB187676
10	gene	70.60105	70.65596	negative	MGI_C57BL6J_2442462	D630013N20Rik	NCBI_Gene:319646	MGI:2442462	lncRNA gene	RIKEN cDNA D630013N20 gene
10	gene	70.62673	70.63526	positive	MGI_C57BL6J_5623573	Gm40688	NCBI_Gene:105245202	MGI:5623573	lncRNA gene	predicted gene, 40688
10	gene	70.71493	70.74045	negative	MGI_C57BL6J_5593138	Gm33979	NCBI_Gene:102637077,ENSEMBL:ENSMUSG00000112607	MGI:5593138	lncRNA gene	predicted gene, 33979
10	gene	70.80724	70.81382	positive	MGI_C57BL6J_6097330	Gm48021	ENSEMBL:ENSMUSG00000112752	MGI:6097330	lncRNA gene	predicted gene, 48021
10	gene	70.81385	70.81605	positive	MGI_C57BL6J_6097332	Gm48022	ENSEMBL:ENSMUSG00000112320	MGI:6097332	lncRNA gene	predicted gene, 48022
10	gene	70.83075	70.84294	positive	MGI_C57BL6J_5623574	Gm40689	NCBI_Gene:105245203,ENSEMBL:ENSMUSG00000112870	MGI:5623574	lncRNA gene	predicted gene, 40689
10	gene	70.84702	70.85373	positive	MGI_C57BL6J_6097334	Gm48023	ENSEMBL:ENSMUSG00000112883	MGI:6097334	lncRNA gene	predicted gene, 48023
10	gene	70.86340	70.86845	negative	MGI_C57BL6J_6097336	Gm48024	ENSEMBL:ENSMUSG00000112125	MGI:6097336	lncRNA gene	predicted gene, 48024
10	gene	70.86862	70.93432	positive	MGI_C57BL6J_1922439	4930533K18Rik	NCBI_Gene:75189,ENSEMBL:ENSMUSG00000047692	MGI:1922439	lncRNA gene	RIKEN cDNA 4930533K18 gene
10	gene	70.87000	70.87242	negative	MGI_C57BL6J_6097351	Gm48036	ENSEMBL:ENSMUSG00000112032	MGI:6097351	lncRNA gene	predicted gene, 48036
10	gene	70.88210	70.88221	positive	MGI_C57BL6J_5454263	Gm24486	ENSEMBL:ENSMUSG00000094703	MGI:5454263	snRNA gene	predicted gene, 24486
10	gene	70.92283	71.15970	negative	MGI_C57BL6J_1933388	Bicc1	NCBI_Gene:83675,ENSEMBL:ENSMUSG00000014329	MGI:1933388	protein coding gene	BicC family RNA binding protein 1
10	gene	70.97551	70.99304	negative	MGI_C57BL6J_6097338	Gm48025	ENSEMBL:ENSMUSG00000112745	MGI:6097338	lncRNA gene	predicted gene, 48025
10	gene	71.08288	71.08365	positive	MGI_C57BL6J_3783091	Gm15647	ENSEMBL:ENSMUSG00000090212	MGI:3783091	lncRNA gene	predicted gene 15647
10	gene	71.12566	71.14157	positive	MGI_C57BL6J_5593296	Gm34137	NCBI_Gene:102637280	MGI:5593296	lncRNA gene	predicted gene, 34137
10	pseudogene	71.14816	71.14981	positive	MGI_C57BL6J_5591184	Gm32025	NCBI_Gene:102634444,ENSEMBL:ENSMUSG00000112566	MGI:5591184	pseudogene	predicted gene, 32025
10	pseudogene	71.16291	71.16338	positive	MGI_C57BL6J_3643973	Gm6331	NCBI_Gene:622551,ENSEMBL:ENSMUSG00000112748	MGI:3643973	pseudogene	predicted gene 6331
10	gene	71.16874	71.18205	negative	MGI_C57BL6J_2442303	C730027H18Rik	NCBI_Gene:319572,ENSEMBL:ENSMUSG00000112189,ENSEMBL:ENSMUSG00000112366	MGI:2442303	lncRNA gene	RIKEN cDNA C730027H18 gene
10	gene	71.18104	71.20449	positive	MGI_C57BL6J_1925888	1700113B09Rik	NCBI_Gene:78638,ENSEMBL:ENSMUSG00000112028	MGI:1925888	lncRNA gene	RIKEN cDNA 1700113B09 gene
10	gene	71.18117	71.20114	positive	MGI_C57BL6J_5593487	Gm34328	NCBI_Gene:102637547	MGI:5593487	lncRNA gene	predicted gene, 34328
10	gene	71.22546	71.23833	negative	MGI_C57BL6J_107810	Tfam	NCBI_Gene:21780,ENSEMBL:ENSMUSG00000003923	MGI:107810	protein coding gene	transcription factor A, mitochondrial
10	gene	71.25498	71.28526	negative	MGI_C57BL6J_2384911	Ube2d1	NCBI_Gene:216080,ENSEMBL:ENSMUSG00000019927	MGI:2384911	protein coding gene	ubiquitin-conjugating enzyme E2D 1
10	gene	71.28773	71.29248	positive	MGI_C57BL6J_5593535	Gm34376	NCBI_Gene:102637612,ENSEMBL:ENSMUSG00000112813	MGI:5593535	lncRNA gene	predicted gene, 34376
10	gene	71.31074	71.31398	positive	MGI_C57BL6J_5313056	Gm20609	NCBI_Gene:102637684,ENSEMBL:ENSMUSG00000093732	MGI:5313056	lncRNA gene	predicted gene 20609
10	pseudogene	71.31873	71.31943	positive	MGI_C57BL6J_3643734	Rpl19-ps2	NCBI_Gene:665472,ENSEMBL:ENSMUSG00000112582	MGI:3643734	pseudogene	ribosomal protein L19, pseudogene 2
10	gene	71.33048	71.34495	negative	MGI_C57BL6J_1261855	Cisd1	NCBI_Gene:52637,ENSEMBL:ENSMUSG00000037710	MGI:1261855	protein coding gene	CDGSH iron sulfur domain 1
10	gene	71.33670	71.33962	negative	MGI_C57BL6J_2143791	4932439E07Rik	NA	NA	unclassified gene	RIKEN cDNA 4932439E07 gene
10	gene	71.34776	71.43333	positive	MGI_C57BL6J_1916968	Ipmk	NCBI_Gene:69718,ENSEMBL:ENSMUSG00000060733	MGI:1916968	protein coding gene	inositol polyphosphate multikinase
10	gene	71.47640	71.48552	negative	MGI_C57BL6J_1922563	4930551I15Rik	ENSEMBL:ENSMUSG00000112108	MGI:1922563	lncRNA gene	RIKEN cDNA 4930551I15 gene
10	pseudogene	71.48250	71.48364	positive	MGI_C57BL6J_5825870	Gm46233	NCBI_Gene:108167820,ENSEMBL:ENSMUSG00000112608	MGI:5825870	pseudogene	predicted gene, 46233
10	gene	71.52044	71.52230	negative	MGI_C57BL6J_6095721	Gm47028	ENSEMBL:ENSMUSG00000112416	MGI:6095721	lncRNA gene	predicted gene, 47028
10	gene	71.52727	71.56537	positive	MGI_C57BL6J_5593645	Gm34486	NCBI_Gene:102637756	MGI:5593645	lncRNA gene	predicted gene, 34486
10	gene	71.52728	71.67884	positive	MGI_C57BL6J_5593703	Gm34544	NCBI_Gene:102637834,ENSEMBL:ENSMUSG00000112126	MGI:5593703	lncRNA gene	predicted gene, 34544
10	pseudogene	71.59585	71.59713	negative	MGI_C57BL6J_3644095	Gm4797	NCBI_Gene:216081,ENSEMBL:ENSMUSG00000111965	MGI:3644095	pseudogene	predicted gene 4797
10	pseudogene	71.61165	71.61307	negative	MGI_C57BL6J_5011259	Gm19074	NCBI_Gene:100418206,ENSEMBL:ENSMUSG00000112624	MGI:5011259	pseudogene	predicted gene, 19074
10	pseudogene	71.70372	71.70417	positive	MGI_C57BL6J_6095749	Gm47045	ENSEMBL:ENSMUSG00000112152	MGI:6095749	pseudogene	predicted gene, 47045
10	pseudogene	71.70429	71.70786	positive	MGI_C57BL6J_3644096	Gm4798	NCBI_Gene:216082,ENSEMBL:ENSMUSG00000112714	MGI:3644096	pseudogene	predicted pseudogene 4798
10	pseudogene	71.71678	71.71802	negative	MGI_C57BL6J_3644102	Gm6362	NCBI_Gene:622812,ENSEMBL:ENSMUSG00000112717	MGI:3644102	pseudogene	predicted gene 6362
10	pseudogene	71.79895	71.79991	negative	MGI_C57BL6J_3648383	Gm5080	NCBI_Gene:327767,ENSEMBL:ENSMUSG00000111999	MGI:3648383	pseudogene	predicted gene 5080
10	gene	71.89804	71.89817	positive	MGI_C57BL6J_5452714	Gm22937	ENSEMBL:ENSMUSG00000077142	MGI:5452714	snoRNA gene	predicted gene, 22937
10	gene	71.96261	72.00535	positive	MGI_C57BL6J_5623575	Gm40690	NCBI_Gene:105245205	MGI:5623575	lncRNA gene	predicted gene, 40690
10	pseudogene	71.97988	71.98069	negative	MGI_C57BL6J_1920633	1700049L16Rik	NCBI_Gene:108950,ENSEMBL:ENSMUSG00000043859	MGI:1920633	pseudogene	RIKEN cDNA 1700049L16 gene
10	pseudogene	72.01921	72.01952	positive	MGI_C57BL6J_6095770	Gm47060	ENSEMBL:ENSMUSG00000112185	MGI:6095770	pseudogene	predicted gene, 47060
10	gene	72.02698	72.11244	positive	MGI_C57BL6J_5593768	Gm34609	NCBI_Gene:102637916,ENSEMBL:ENSMUSG00000112414	MGI:5593768	lncRNA gene	predicted gene, 34609
10	pseudogene	72.30920	72.31184	positive	MGI_C57BL6J_3704365	Gm9923	NCBI_Gene:100040505,ENSEMBL:ENSMUSG00000053830	MGI:3704365	pseudogene	predicted pseudogene 9923
10	gene	72.52755	72.52768	positive	MGI_C57BL6J_5454761	Gm24984	ENSEMBL:ENSMUSG00000077642	MGI:5454761	snoRNA gene	predicted gene, 24984
10	gene	72.62307	72.64304	negative	MGI_C57BL6J_5593818	Gm34659	NCBI_Gene:102637980	MGI:5593818	lncRNA gene	predicted gene, 34659
10	gene	72.65484	72.67496	positive	MGI_C57BL6J_1289227	Zwint	NCBI_Gene:52696,ENSEMBL:ENSMUSG00000019923	MGI:1289227	protein coding gene	ZW10 interactor
10	gene	72.65790	72.66177	positive	MGI_C57BL6J_1916486	2610034E01Rik	NA	NA	unclassified gene	RIKEN cDNA 2610034E01 gene
10	pseudogene	72.71793	72.71849	positive	MGI_C57BL6J_6095826	Gm47094	ENSEMBL:ENSMUSG00000112862	MGI:6095826	pseudogene	predicted gene, 47094
10	gene	72.93994	72.97316	negative	MGI_C57BL6J_5593935	Gm34776	NCBI_Gene:102638141,ENSEMBL:ENSMUSG00000112168	MGI:5593935	lncRNA gene	predicted gene, 34776
10	gene	72.97330	73.08670	negative	MGI_C57BL6J_3041175	A330049N07Rik	NCBI_Gene:327768,ENSEMBL:ENSMUSG00000111994	MGI:3041175	lncRNA gene	RIKEN cDNA A330049N07 gene
10	gene	73.09627	74.64983	positive	MGI_C57BL6J_1891428	Pcdh15	NCBI_Gene:11994,ENSEMBL:ENSMUSG00000052613	MGI:1891428	protein coding gene	protocadherin 15
10	gene	73.18293	73.18332	negative	MGI_C57BL6J_5610666	Gm37438	ENSEMBL:ENSMUSG00000102584	MGI:5610666	unclassified gene	predicted gene, 37438
10	gene	73.20140	73.32717	negative	MGI_C57BL6J_3705254	Gm15398	ENSEMBL:ENSMUSG00000085456	MGI:3705254	lncRNA gene	predicted gene 15398
10	pseudogene	73.20153	73.20277	positive	MGI_C57BL6J_3646275	Gm5778	NCBI_Gene:544705,ENSEMBL:ENSMUSG00000091825	MGI:3646275	pseudogene	predicted gene 5778
10	pseudogene	73.27574	73.27609	positive	MGI_C57BL6J_6095833	Gm47098	ENSEMBL:ENSMUSG00000112838	MGI:6095833	pseudogene	predicted gene, 47098
10	pseudogene	73.37233	73.37603	negative	MGI_C57BL6J_5011353	Gm19168	NCBI_Gene:100418377,ENSEMBL:ENSMUSG00000112427	MGI:5011353	pseudogene	predicted gene, 19168
10	gene	73.48997	73.51839	positive	MGI_C57BL6J_3705298	Gm15397	ENSEMBL:ENSMUSG00000085176	MGI:3705298	lncRNA gene	predicted gene 15397
10	pseudogene	73.69010	73.69101	negative	MGI_C57BL6J_3642965	Gm6407	NCBI_Gene:623191,ENSEMBL:ENSMUSG00000093548	MGI:3642965	pseudogene	predicted gene 6407
10	gene	73.88745	73.88812	positive	MGI_C57BL6J_1925054	A930019H14Rik	NA	NA	unclassified gene	RIKEN cDNA A930019H14 gene
10	gene	74.12754	74.13688	negative	MGI_C57BL6J_5623576	Gm40691	NCBI_Gene:105245206	MGI:5623576	lncRNA gene	predicted gene, 40691
10	pseudogene	74.82063	74.82149	positive	MGI_C57BL6J_3644650	Gm7034	NCBI_Gene:630453,ENSEMBL:ENSMUSG00000112686	MGI:3644650	pseudogene	predicted gene 7034
10	pseudogene	74.86286	74.86351	negative	MGI_C57BL6J_3647564	Gm6419	NCBI_Gene:623346,ENSEMBL:ENSMUSG00000072407	MGI:3647564	pseudogene	predicted gene 6419
10	gene	74.95748	75.03435	negative	MGI_C57BL6J_1918486	Rsph14	NCBI_Gene:71236,ENSEMBL:ENSMUSG00000009070	MGI:1918486	protein coding gene	radial spoke head homolog 14 (Chlamydomonas)
10	gene	74.96709	75.01691	positive	MGI_C57BL6J_95780	Gnaz	NCBI_Gene:14687,ENSEMBL:ENSMUSG00000040009	MGI:95780	protein coding gene	guanine nucleotide binding protein, alpha z subunit

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
10	gene	81.64906	81.66736	positive	MGI_C57BL6J_3809656	Gm10778	NCBI_Gene:100233208,ENSEMBL:ENSMUSG00000096856	MGI:3809656	protein coding gene	predicted gene 10778
10	pseudogene	81.67912	81.68051	positive	MGI_C57BL6J_6096529	Gm47527	ENSEMBL:ENSMUSG00000112585	MGI:6096529	pseudogene	predicted gene, 47527
10	pseudogene	81.69368	81.69524	negative	MGI_C57BL6J_3645531	Gm8112	NCBI_Gene:108167775,ENSEMBL:ENSMUSG00000112001	MGI:3645531	pseudogene	predicted gene 8112
10	gene	81.70419	81.72669	positive	MGI_C57BL6J_1920860	Zfp433	NCBI_Gene:73610,ENSEMBL:ENSMUSG00000096795	MGI:1920860	protein coding gene	zinc finger protein 433
10	pseudogene	81.71460	81.71650	positive	MGI_C57BL6J_3647617	Gm8249	NCBI_Gene:105245234,ENSEMBL:ENSMUSG00000112061	MGI:3647617	pseudogene	predicted gene 8249
10	pseudogene	81.71704	81.71756	negative	MGI_C57BL6J_6096532	Gm47529	ENSEMBL:ENSMUSG00000112339	MGI:6096532	pseudogene	predicted gene, 47529
10	pseudogene	81.72790	81.72909	positive	MGI_C57BL6J_3642939	Gm5173	NCBI_Gene:382388,ENSEMBL:ENSMUSG00000112621	MGI:3642939	pseudogene	predicted gene 5173
10	gene	81.74282	81.77116	negative	MGI_C57BL6J_3809197	Gm3055	NCBI_Gene:100040944,ENSEMBL:ENSMUSG00000094622	MGI:3809197	protein coding gene	predicted gene 3055
10	pseudogene	81.80443	81.80570	positive	MGI_C57BL6J_6096545	Gm47537	ENSEMBL:ENSMUSG00000112877	MGI:6096545	pseudogene	predicted gene, 47537
10	gene	81.81194	81.82649	positive	MGI_C57BL6J_3644409	Gm4767	NCBI_Gene:210583,ENSEMBL:ENSMUSG00000094076	MGI:3644409	protein coding gene	predicted gene 4767
10	pseudogene	81.81843	81.81898	negative	MGI_C57BL6J_3647363	Gm8264	NCBI_Gene:666738,ENSEMBL:ENSMUSG00000112740	MGI:3647363	pseudogene	predicted gene 8264
10	pseudogene	81.85277	81.85332	negative	MGI_C57BL6J_3647467	Gm8137	NCBI_Gene:666501,ENSEMBL:ENSMUSG00000112697	MGI:3647467	pseudogene	predicted gene 8137
10	gene	81.86344	81.88291	positive	MGI_C57BL6J_5591846	Gm32687	NCBI_Gene:102635315,ENSEMBL:ENSMUSG00000112640	MGI:5591846	protein coding gene	predicted gene, 32687
10	pseudogene	81.87371	81.87557	positive	MGI_C57BL6J_3648016	Gm8274	NCBI_Gene:105245237,ENSEMBL:ENSMUSG00000112196	MGI:3648016	pseudogene	predicted gene 8274
10	pseudogene	81.87615	81.87667	negative	MGI_C57BL6J_6096547	Gm47539	ENSEMBL:ENSMUSG00000112760	MGI:6096547	pseudogene	predicted gene, 47539
10	pseudogene	81.88699	81.88818	positive	MGI_C57BL6J_3644502	Gm8153	NCBI_Gene:666537,ENSEMBL:ENSMUSG00000112311	MGI:3644502	pseudogene	predicted gene 8153
10	gene	81.90191	81.93127	negative	MGI_C57BL6J_3696710	Zfp781	NCBI_Gene:331188,ENSEMBL:ENSMUSG00000096718	MGI:3696710	protein coding gene	zinc finger protein 781
10	pseudogene	81.96380	81.96509	positive	MGI_C57BL6J_6096560	Gm47546	ENSEMBL:ENSMUSG00000112205	MGI:6096560	pseudogene	predicted gene, 47546
10	gene	81.97809	81.99536	positive	MGI_C57BL6J_5011987	Gm19802	NCBI_Gene:105245236	MGI:5011987	protein coding gene	predicted gene, 19802
10	pseudogene	81.98590	81.98645	negative	MGI_C57BL6J_3647883	Gm8158	NCBI_Gene:666548,ENSEMBL:ENSMUSG00000112051	MGI:3647883	pseudogene	predicted gene 8158
10	gene	81.99597	82.01164	positive	MGI_C57BL6J_3642231	Gm10777	NCBI_Gene:102635133	MGI:3642231	lncRNA gene	predicted gene 10777
10	pseudogene	82.00829	82.00981	positive	MGI_C57BL6J_3648461	Gm8290	NCBI_Gene:666790,ENSEMBL:ENSMUSG00000111985	MGI:3648461	pseudogene	predicted gene 8290
10	pseudogene	82.00948	82.00980	negative	MGI_C57BL6J_5825831	Gm46194	NCBI_Gene:108167776,ENSEMBL:ENSMUSG00000112502	MGI:5825831	pseudogene	predicted gene, 46194
10	gene	82.01170	82.01723	positive	MGI_C57BL6J_5592537	Gm33378	NCBI_Gene:102636264,ENSEMBL:ENSMUSG00000112790	MGI:5592537	protein coding gene	predicted gene, 33378
10	pseudogene	82.02053	82.02171	positive	MGI_C57BL6J_3644928	Gm8170	NCBI_Gene:666571,ENSEMBL:ENSMUSG00000112381	MGI:3644928	pseudogene	predicted gene 8170
10	gene	82.04464	82.04804	negative	MGI_C57BL6J_3034336	AL117821	NA	NA	unclassified gene	expressed sequence AL117821
10	gene	82.04645	82.04805	negative	MGI_C57BL6J_5825832	Gm46195	NCBI_Gene:108167777	MGI:5825832	lncRNA gene	predicted gene, 46195
10	gene	82.04809	82.07773	positive	MGI_C57BL6J_3040689	Zfp873	NCBI_Gene:408062,ENSEMBL:ENSMUSG00000061371	MGI:3040689	protein coding gene	zinc finger protein 873
10	pseudogene	82.05611	82.05724	negative	MGI_C57BL6J_5010741	Gm18556	NCBI_Gene:100417356,ENSEMBL:ENSMUSG00000112373	MGI:5010741	pseudogene	predicted gene, 18556
10	gene	82.08301	82.08362	negative	MGI_C57BL6J_3041223	D430050E20Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA D430050E20 gene
10	gene	82.08332	82.11122	positive	MGI_C57BL6J_2670978	BC024063	NCBI_Gene:666584,ENSEMBL:ENSMUSG00000112160	MGI:2670978	protein coding gene	cDNA sequence BC024063
10	gene	82.08341	82.08567	positive	MGI_C57BL6J_3041160	4933439G19Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 4933439G19 gene
10	gene	82.12668	82.12829	negative	MGI_C57BL6J_1918064	4921506L19Rik	NA	NA	unclassified gene	RIKEN cDNA 4921506L19 gene
10	gene	82.12801	82.15306	positive	MGI_C57BL6J_2143755	AU041133	NCBI_Gene:216177,ENSEMBL:ENSMUSG00000078435	MGI:2143755	protein coding gene	expressed sequence AU041133
10	gene	82.15710	82.16046	positive	MGI_C57BL6J_6096602	Gm47572	ENSEMBL:ENSMUSG00000112922	MGI:6096602	unclassified gene	predicted gene, 47572
10	gene	82.16425	82.16678	positive	MGI_C57BL6J_6096604	Gm47573	ENSEMBL:ENSMUSG00000112847	MGI:6096604	unclassified gene	predicted gene, 47573
10	gene	82.17763	82.19129	positive	MGI_C57BL6J_5623605	Gm40720	NCBI_Gene:105245239	MGI:5623605	lncRNA gene	predicted gene, 40720
10	gene	82.17824	82.20149	positive	MGI_C57BL6J_3801804	Gm15608	NCBI_Gene:105245241,ENSEMBL:ENSMUSG00000112110	MGI:3801804	lncRNA gene	predicted gene 15608
10	gene	82.17842	82.18109	positive	MGI_C57BL6J_3642233	Gm10776	NA	NA	unclassified gene	predicted gene 10776
10	pseudogene	82.21905	82.22446	positive	MGI_C57BL6J_3782155	Gm3982	NCBI_Gene:105245240	MGI:3782155	pseudogene	predicted gene 3982
10	gene	82.22457	82.24128	negative	MGI_C57BL6J_3621440	Zfp938	NCBI_Gene:237411,ENSEMBL:ENSMUSG00000062931	MGI:3621440	protein coding gene	zinc finger protein 938
10	pseudogene	82.26645	82.26687	negative	MGI_C57BL6J_6096302	Gm47382	ENSEMBL:ENSMUSG00000111930	MGI:6096302	pseudogene	predicted gene, 47382
10	gene	82.28211	82.31658	negative	MGI_C57BL6J_3045298	4932415D10Rik	NCBI_Gene:102635990,ENSEMBL:ENSMUSG00000044581	MGI:3045298	protein coding gene	RIKEN cDNA 4932415D10 gene
10	gene	82.31538	82.31656	negative	MGI_C57BL6J_1918439	4933426I03Rik	NA	NA	unclassified gene	RIKEN cDNA 4933426I03 gene
10	gene	82.35422	82.42288	positive	MGI_C57BL6J_3643133	Gm4924	NCBI_Gene:237412,ENSEMBL:ENSMUSG00000073427	MGI:3643133	protein coding gene	predicted gene 4924
10	pseudogene	82.43070	82.43239	positive	MGI_C57BL6J_3646272	Gm8188	NCBI_Gene:666611,ENSEMBL:ENSMUSG00000112163	MGI:3646272	pseudogene	predicted gene 8188
10	pseudogene	82.44262	82.44294	positive	MGI_C57BL6J_6096993	Gm47809	ENSEMBL:ENSMUSG00000112070	MGI:6096993	pseudogene	predicted gene, 47809
10	gene	82.48653	82.49262	negative	MGI_C57BL6J_2686399	Gm1553	NCBI_Gene:432480,ENSEMBL:ENSMUSG00000094186	MGI:2686399	protein coding gene	predicted gene 1553
10	pseudogene	82.56677	82.56751	positive	MGI_C57BL6J_5011371	Gm19186	NCBI_Gene:100418403,ENSEMBL:ENSMUSG00000112560	MGI:5011371	pseudogene	predicted gene, 19186
10	pseudogene	82.58538	82.58754	positive	MGI_C57BL6J_3645307	Ap3m1-ps	NCBI_Gene:544716,ENSEMBL:ENSMUSG00000094683	MGI:3645307	pseudogene	adaptor-related protein complex 3, mu 1 subunit, pseudogene
10	gene	82.61326	82.61895	negative	MGI_C57BL6J_5623606	Gm40721	NCBI_Gene:105245242	MGI:5623606	lncRNA gene	predicted gene, 40721
10	gene	82.61985	82.62323	negative	MGI_C57BL6J_3698433	1190007I07Rik	NCBI_Gene:544717,ENSEMBL:ENSMUSG00000063320	MGI:3698433	protein coding gene	RIKEN cDNA 1190007I07 gene
10	gene	82.62982	82.65080	positive	MGI_C57BL6J_108247	Tdg	NCBI_Gene:21665,ENSEMBL:ENSMUSG00000034674	MGI:108247	protein coding gene	thymine DNA glycosylase
10	gene	82.65043	82.69412	negative	MGI_C57BL6J_1922032	Glt8d2	NCBI_Gene:74782,ENSEMBL:ENSMUSG00000020251	MGI:1922032	protein coding gene	glycosyltransferase 8 domain containing 2
10	gene	82.69616	82.79587	positive	MGI_C57BL6J_1915183	Hcfc2	NCBI_Gene:67933,ENSEMBL:ENSMUSG00000020246	MGI:1915183	protein coding gene	host cell factor C2
10	gene	82.74870	82.76414	negative	MGI_C57BL6J_97317	Nfyb	NCBI_Gene:18045,ENSEMBL:ENSMUSG00000020248	MGI:97317	protein coding gene	nuclear transcription factor-Y beta
10	pseudogene	82.76974	82.76990	negative	MGI_C57BL6J_6096583	Gm47560	ENSEMBL:ENSMUSG00000112107	MGI:6096583	pseudogene	predicted gene, 47560
10	gene	82.77132	82.77778	positive	MGI_C57BL6J_6096584	Gm47561	ENSEMBL:ENSMUSG00000112286	MGI:6096584	lncRNA gene	predicted gene, 47561
10	gene	82.81212	82.82424	positive	MGI_C57BL6J_1917253	1700028I16Rik	NCBI_Gene:70003,ENSEMBL:ENSMUSG00000056821	MGI:1917253	lncRNA gene	RIKEN cDNA 1700028I16 gene
10	gene	82.83395	82.89772	positive	MGI_C57BL6J_1354175	Txnrd1	NCBI_Gene:50493,ENSEMBL:ENSMUSG00000020250	MGI:1354175	protein coding gene	thioredoxin reductase 1
10	gene	82.84534	82.85921	negative	MGI_C57BL6J_5621445	Gm38560	NCBI_Gene:102641476,ENSEMBL:ENSMUSG00000112375	MGI:5621445	lncRNA gene	predicted gene, 38560
10	gene	82.85125	82.85265	negative	MGI_C57BL6J_6095792	Gm47073	ENSEMBL:ENSMUSG00000112889	MGI:6095792	unclassified gene	predicted gene, 47073
10	gene	82.86663	82.86793	positive	MGI_C57BL6J_1913591	Eid3	NCBI_Gene:66341,ENSEMBL:ENSMUSG00000109864	MGI:1913591	protein coding gene	EP300 interacting inhibitor of differentiation 3
10	gene	82.89138	82.89502	positive	MGI_C57BL6J_2442548	9130221J17Rik	NA	NA	unclassified gene	RIKEN cDNA 9130221J17 gene
10	gene	82.92700	82.93464	negative	MGI_C57BL6J_5592940	Gm33781	NCBI_Gene:102636812	MGI:5592940	lncRNA gene	predicted gene, 33781
10	pseudogene	82.95433	82.95508	positive	MGI_C57BL6J_3648850	Gm4799	NCBI_Gene:216185,ENSEMBL:ENSMUSG00000071151	MGI:3648850	pseudogene	predicted gene 4799
10	gene	82.98538	83.19590	positive	MGI_C57BL6J_1927166	Chst11	NCBI_Gene:58250,ENSEMBL:ENSMUSG00000034612	MGI:1927166	protein coding gene	carbohydrate sulfotransferase 11
10	gene	83.02776	83.03169	negative	MGI_C57BL6J_3641797	Gm10773	ENSEMBL:ENSMUSG00000112084	MGI:3641797	protein coding gene	predicted gene 10773
10	gene	83.13915	83.14204	negative	MGI_C57BL6J_1916665	1700025N21Rik	ENSEMBL:ENSMUSG00000090200	MGI:1916665	lncRNA gene	RIKEN cDNA 1700025N21 gene
10	gene	83.15802	83.15813	negative	MGI_C57BL6J_5452899	Gm23122	ENSEMBL:ENSMUSG00000088270	MGI:5452899	snRNA gene	predicted gene, 23122
10	gene	83.23085	83.33833	negative	MGI_C57BL6J_2442940	Slc41a2	NCBI_Gene:338365,ENSEMBL:ENSMUSG00000034591	MGI:2442940	protein coding gene	solute carrier family 41, member 2
10	pseudogene	83.33272	83.33336	positive	MGI_C57BL6J_6095950	Gm47170	ENSEMBL:ENSMUSG00000112577	MGI:6095950	pseudogene	predicted gene, 47170
10	gene	83.33870	83.33963	positive	MGI_C57BL6J_5623607	Gm40722	NCBI_Gene:105245243	MGI:5623607	lncRNA gene	predicted gene, 40722
10	gene	83.34395	83.35139	positive	MGI_C57BL6J_5623608	Gm40723	NCBI_Gene:105245244,ENSEMBL:ENSMUSG00000112134	MGI:5623608	lncRNA gene	predicted gene, 40723
10	gene	83.36022	83.48851	positive	MGI_C57BL6J_106381	D10Wsu102e	NCBI_Gene:28109,ENSEMBL:ENSMUSG00000020255	MGI:106381	protein coding gene	DNA segment, Chr 10, Wayne State University 102, expressed
10	pseudogene	83.47800	83.48125	negative	MGI_C57BL6J_3648990	Gm8270	NCBI_Gene:102636894	MGI:3648990	pseudogene	predicted gene 8270
10	gene	83.48745	83.53415	negative	MGI_C57BL6J_2444680	Aldh1l2	NCBI_Gene:216188,ENSEMBL:ENSMUSG00000020256	MGI:2444680	protein coding gene	aldehyde dehydrogenase 1 family, member L2
10	gene	83.54375	83.59647	positive	MGI_C57BL6J_2441787	Washc4	NCBI_Gene:319277,ENSEMBL:ENSMUSG00000034560	MGI:2441787	protein coding gene	WASH complex subunit 4

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
10	gene	84.03656	84.10088	negative	MGI_C57BL6J_5593343	Gm34184	NCBI_Gene:102637349,ENSEMBL:ENSMUSG00000111049	MGI:5593343	lncRNA gene	predicted gene, 34184
10	gene	84.08463	84.09625	positive	MGI_C57BL6J_5593272	Gm34113	NCBI_Gene:102637247,ENSEMBL:ENSMUSG00000111524	MGI:5593272	lncRNA gene	predicted gene, 34113
10	gene	84.10438	84.11042	negative	MGI_C57BL6J_5623612	Gm40727	NCBI_Gene:105245248	MGI:5623612	lncRNA gene	predicted gene, 40727
10	gene	84.19182	84.22206	negative	MGI_C57BL6J_6096082	Gm47253	ENSEMBL:ENSMUSG00000111062	MGI:6096082	lncRNA gene	predicted gene, 47253
10	pseudogene	84.30887	84.30936	positive	MGI_C57BL6J_3643901	Gm5425	NCBI_Gene:432482,ENSEMBL:ENSMUSG00000111875	MGI:3643901	pseudogene	predicted gene 5425
10	gene	84.31732	84.33575	negative	MGI_C57BL6J_5825838	Gm46201	NCBI_Gene:108167783	MGI:5825838	lncRNA gene	predicted gene, 46201
10	gene	84.37090	84.44060	negative	MGI_C57BL6J_1925226	Nuak1	NCBI_Gene:77976,ENSEMBL:ENSMUSG00000020032	MGI:1925226	protein coding gene	NUAK family, SNF1-like kinase, 1
10	gene	84.44083	84.46701	positive	MGI_C57BL6J_6097239	Gm47962	ENSEMBL:ENSMUSG00000111583	MGI:6097239	lncRNA gene	predicted gene, 47962
10	gene	84.48829	84.49768	positive	MGI_C57BL6J_1923054	4930463O16Rik	NCBI_Gene:75804,ENSEMBL:ENSMUSG00000020033	MGI:1923054	lncRNA gene	RIKEN cDNA 4930463O16 gene
10	gene	84.49887	84.49963	positive	MGI_C57BL6J_1921541	1700092E16Rik	ENSEMBL:ENSMUSG00000111487	MGI:1921541	unclassified non-coding RNA gene	RIKEN cDNA 1700092E16 gene
10	gene	84.50004	84.51710	negative	MGI_C57BL6J_5593564	Gm34405	NCBI_Gene:102637645	MGI:5593564	lncRNA gene	predicted gene, 34405
10	pseudogene	84.50203	84.50256	negative	MGI_C57BL6J_5010436	Gm18251	NCBI_Gene:100416788,ENSEMBL:ENSMUSG00000111478	MGI:5010436	pseudogene	predicted gene, 18251
10	gene	84.51805	84.52327	positive	MGI_C57BL6J_3045388	E230014E18Rik	ENSEMBL:ENSMUSG00000111514	MGI:3045388	lncRNA gene	RIKEN cDNA E230014E18 gene
10	gene	84.52630	84.53406	negative	MGI_C57BL6J_2444926	Ckap4	NCBI_Gene:216197,ENSEMBL:ENSMUSG00000046841	MGI:2444926	protein coding gene	cytoskeleton-associated protein 4
10	gene	84.54742	84.55334	negative	MGI_C57BL6J_3045387	Platr7	NCBI_Gene:442847,ENSEMBL:ENSMUSG00000097076	MGI:3045387	lncRNA gene	pluripotency associated transcript 7
10	gene	84.57232	84.57507	positive	MGI_C57BL6J_5593674	Gm34515	NCBI_Gene:102637793	MGI:5593674	lncRNA gene	predicted gene, 34515
10	gene	84.57663	84.61436	positive	MGI_C57BL6J_2444679	Tcp11l2	NCBI_Gene:216198,ENSEMBL:ENSMUSG00000020034	MGI:2444679	protein coding gene	t-complex 11 (mouse) like 2
10	gene	84.61472	84.61481	positive	MGI_C57BL6J_5455434	Gm25657	ENSEMBL:ENSMUSG00000089096	MGI:5455434	snRNA gene	predicted gene, 25657
10	gene	84.61834	84.62753	negative	MGI_C57BL6J_4936883	Gm17249	NCBI_Gene:102637873,ENSEMBL:ENSMUSG00000097309	MGI:4936883	lncRNA gene	predicted gene, 17249
10	gene	84.62229	84.72718	positive	MGI_C57BL6J_1917678	Polr3b	NCBI_Gene:70428,ENSEMBL:ENSMUSG00000034453	MGI:1917678	protein coding gene	polymerase (RNA) III (DNA directed) polypeptide B
10	gene	84.75605	84.90654	positive	MGI_C57BL6J_1918387	Rfx4	NCBI_Gene:71137,ENSEMBL:ENSMUSG00000020037	MGI:1918387	protein coding gene	regulatory factor X, 4 (influences HLA class II expression)
10	gene	84.79795	84.86329	negative	MGI_C57BL6J_5623613	Gm40728	NCBI_Gene:105245249	MGI:5623613	lncRNA gene	predicted gene, 40728
10	gene	84.81109	84.81118	negative	MGI_C57BL6J_5454003	Gm24226	ENSEMBL:ENSMUSG00000089451	MGI:5454003	snRNA gene	predicted gene, 24226
10	gene	84.91725	85.01834	positive	MGI_C57BL6J_2682307	Ric8b	NCBI_Gene:237422,ENSEMBL:ENSMUSG00000035620	MGI:2682307	protein coding gene	RIC8 guanine nucleotide exchange factor B
10	gene	84.98771	85.00365	negative	MGI_C57BL6J_5593792	Gm34633	NCBI_Gene:102637948	MGI:5593792	lncRNA gene	predicted gene, 34633
10	gene	85.09629	85.10250	negative	MGI_C57BL6J_1338765	Fhl4	NCBI_Gene:14202,ENSEMBL:ENSMUSG00000050035	MGI:1338765	protein coding gene	four and a half LIM domains 4
10	gene	85.10263	85.12062	positive	MGI_C57BL6J_2143652	Tmem263	NCBI_Gene:103266,ENSEMBL:ENSMUSG00000060935	MGI:2143652	protein coding gene	transmembrane protein 263
10	gene	85.11943	85.12807	negative	MGI_C57BL6J_1921488	Mterf2	NCBI_Gene:74238,ENSEMBL:ENSMUSG00000049038	MGI:1921488	protein coding gene	mitochondrial transcription termination factor 2
10	gene	85.13170	85.18506	negative	MGI_C57BL6J_1270841	Cry1	NCBI_Gene:12952,ENSEMBL:ENSMUSG00000020038	MGI:1270841	protein coding gene	cryptochrome 1 (photolyase-like)
10	gene	85.22094	85.26639	negative	MGI_C57BL6J_5621460	Gm38575	ENSEMBL:ENSMUSG00000111752	MGI:5621460	lncRNA gene	predicted gene, 38575
10	gene	85.28423	85.28433	negative	MGI_C57BL6J_5530774	Gm27392	ENSEMBL:ENSMUSG00000098852	MGI:5530774	miRNA gene	predicted gene, 27392
10	pseudogene	85.31347	85.31444	positive	MGI_C57BL6J_3647964	Gm8394	NCBI_Gene:666974,ENSEMBL:ENSMUSG00000050490	MGI:3647964	pseudogene	predicted gene 8394
10	gene	85.33269	85.34757	negative	MGI_C57BL6J_5593871	Gm34712	NCBI_Gene:102638057	MGI:5593871	lncRNA gene	predicted gene, 34712
10	gene	85.33390	85.33400	positive	MGI_C57BL6J_5455058	Gm25281	ENSEMBL:ENSMUSG00000087895	MGI:5455058	miRNA gene	predicted gene, 25281
10	gene	85.33901	85.33995	positive	MGI_C57BL6J_5623615	Gm40730	NCBI_Gene:105245251	MGI:5623615	lncRNA gene	predicted gene, 40730
10	gene	85.38677	85.66029	positive	MGI_C57BL6J_1921257	Btbd11	NCBI_Gene:74007,ENSEMBL:ENSMUSG00000020042	MGI:1921257	protein coding gene	BTB (POZ) domain containing 11
10	gene	85.57888	85.58399	negative	MGI_C57BL6J_5623616	Gm40731	NCBI_Gene:105245252	MGI:5623616	lncRNA gene	predicted gene, 40731

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
10	gene	86.04875	86.49903	negative	MGI_C57BL6J_1351334	Syn3	NCBI_Gene:27204,ENSEMBL:ENSMUSG00000059602	MGI:1351334	protein coding gene	synapsin III
10	gene	86.09585	86.11359	positive	MGI_C57BL6J_1925420	4930486F22Rik	NCBI_Gene:78170,ENSEMBL:ENSMUSG00000112493	MGI:1925420	lncRNA gene	RIKEN cDNA 4930486F22 gene
10	gene	86.12583	86.12985	positive	MGI_C57BL6J_3801993	Gm15990	ENSEMBL:ENSMUSG00000087256	MGI:3801993	lncRNA gene	predicted gene 15990
10	gene	86.15613	86.18954	positive	MGI_C57BL6J_5594795	Gm35636	NCBI_Gene:102639289	MGI:5594795	lncRNA gene	predicted gene, 35636
10	gene	86.30037	86.34951	positive	MGI_C57BL6J_98754	Timp3	NCBI_Gene:21859,ENSEMBL:ENSMUSG00000020044	MGI:98754	protein coding gene	tissue inhibitor of metalloproteinase 3
10	gene	86.32703	86.32930	positive	MGI_C57BL6J_2443425	B930095M22Rik	NA	NA	unclassified gene	RIKEN cDNA B930095M22 gene
10	gene	86.52630	86.54187	negative	MGI_C57BL6J_3646339	Gm6729	NCBI_Gene:627035,ENSEMBL:ENSMUSG00000090816,ENSEMBL:ENSMUSG00000112586	MGI:3646339	protein coding gene	predicted gene 6729
10	pseudogene	86.55081	86.55266	negative	MGI_C57BL6J_3779991	Gm9583	NCBI_Gene:672902,ENSEMBL:ENSMUSG00000112893	MGI:3779991	pseudogene	predicted gene 9583
10	pseudogene	86.55495	86.55618	negative	MGI_C57BL6J_5434382	Gm21027	NCBI_Gene:100534314,ENSEMBL:ENSMUSG00000112115	MGI:5434382	pseudogene	predicted gene, 21027
10	pseudogene	86.56993	86.57168	positive	MGI_C57BL6J_6097960	Gm48448	ENSEMBL:ENSMUSG00000112207	MGI:6097960	pseudogene	predicted gene, 48448
10	pseudogene	86.57176	86.57297	positive	MGI_C57BL6J_6097963	Gm48450	ENSEMBL:ENSMUSG00000112579	MGI:6097963	pseudogene	predicted gene, 48450
10	pseudogene	86.57304	86.57425	positive	MGI_C57BL6J_6097964	Gm48451	ENSEMBL:ENSMUSG00000112562	MGI:6097964	pseudogene	predicted gene, 48451
10	pseudogene	86.57432	86.57553	positive	MGI_C57BL6J_6097968	Gm48454	ENSEMBL:ENSMUSG00000112325	MGI:6097968	pseudogene	predicted gene, 48454
10	pseudogene	86.57562	86.57585	positive	MGI_C57BL6J_6097974	Gm48460	ENSEMBL:ENSMUSG00000112268	MGI:6097974	pseudogene	predicted gene, 48460
10	pseudogene	86.59235	86.59366	positive	MGI_C57BL6J_5825828	Gm46191	NCBI_Gene:108167772,ENSEMBL:ENSMUSG00000112735	MGI:5825828	pseudogene	predicted gene, 46191
10	pseudogene	86.60092	86.60144	positive	MGI_C57BL6J_6097975	Gm48461	ENSEMBL:ENSMUSG00000112010	MGI:6097975	pseudogene	predicted gene, 48461
10	pseudogene	86.60157	86.60174	positive	MGI_C57BL6J_6097978	Gm48463	ENSEMBL:ENSMUSG00000112638	MGI:6097978	pseudogene	predicted gene, 48463
10	pseudogene	86.60178	86.60293	positive	MGI_C57BL6J_6097979	Gm48464	ENSEMBL:ENSMUSG00000112834	MGI:6097979	pseudogene	predicted gene, 48464
10	pseudogene	86.60301	86.60420	positive	MGI_C57BL6J_6097980	Gm48465	ENSEMBL:ENSMUSG00000111998	MGI:6097980	pseudogene	predicted gene, 48465
10	pseudogene	86.60429	86.60476	positive	MGI_C57BL6J_6097981	Gm48466	ENSEMBL:ENSMUSG00000112078	MGI:6097981	pseudogene	predicted gene, 48466
10	pseudogene	86.62065	86.62093	negative	MGI_C57BL6J_6097988	Gm48473	ENSEMBL:ENSMUSG00000112565	MGI:6097988	pseudogene	predicted gene, 48473
10	pseudogene	86.62098	86.62213	negative	MGI_C57BL6J_6097989	Gm48474	ENSEMBL:ENSMUSG00000112699	MGI:6097989	pseudogene	predicted gene, 48474
10	pseudogene	86.62226	86.62400	negative	MGI_C57BL6J_6097990	Gm48475	ENSEMBL:ENSMUSG00000112359	MGI:6097990	pseudogene	predicted gene, 48475
10	pseudogene	86.63714	86.63839	positive	MGI_C57BL6J_5012174	Gm19989	NCBI_Gene:100534315,ENSEMBL:ENSMUSG00000112282	MGI:5012174	pseudogene	predicted gene, 19989
10	pseudogene	86.64068	86.64253	positive	MGI_C57BL6J_5011061	Gm18876	NCBI_Gene:100417881,ENSEMBL:ENSMUSG00000112098	MGI:5011061	pseudogene	predicted gene, 18876
10	gene	86.65543	86.67102	positive	MGI_C57BL6J_3646116	Gm5174	NCBI_Gene:382395,ENSEMBL:ENSMUSG00000090308	MGI:3646116	protein coding gene	predicted gene 5174
10	gene	86.65740	86.67102	positive	MGI_C57BL6J_6098005	Gm48485	ENSEMBL:ENSMUSG00000112666	MGI:6098005	lncRNA gene	predicted gene, 48485
10	pseudogene	86.68552	86.69481	positive	MGI_C57BL6J_1913513	1810014B01Rik	NCBI_Gene:66263,ENSEMBL:ENSMUSG00000097412	MGI:1913513	pseudogene	RIKEN cDNA 1810014B01 gene
10	gene	86.69021	86.70551	negative	MGI_C57BL6J_98817	Hsp90b1	NCBI_Gene:22027,ENSEMBL:ENSMUSG00000020048	MGI:98817	protein coding gene	heat shock protein 90, beta (Grp94), member 1
10	gene	86.69212	86.69309	negative	MGI_C57BL6J_3708098	Gm15344	ENSEMBL:ENSMUSG00000084899	MGI:3708098	lncRNA gene	predicted gene 15344
10	gene	86.70532	86.70545	negative	MGI_C57BL6J_5455522	Gm25745	ENSEMBL:ENSMUSG00000092686	MGI:5455522	miRNA gene	predicted gene, 25745
10	gene	86.70562	86.77684	positive	MGI_C57BL6J_2387653	Ttc41	NCBI_Gene:103220,ENSEMBL:ENSMUSG00000044937	MGI:2387653	protein coding gene	tetratricopeptide repeat domain 41
10	pseudogene	86.73175	86.73239	negative	MGI_C57BL6J_101929	Fabp3-ps1	NCBI_Gene:14074,ENSEMBL:ENSMUSG00000056366	MGI:101929	pseudogene	fatty acid binding protein 3, muscle and heart, pseudogene 1
10	gene	86.76397	86.83397	positive	MGI_C57BL6J_6121566	Gm49358	ENSEMBL:ENSMUSG00000112743	MGI:6121566	protein coding gene	predicted gene, 49358
10	gene	86.77899	86.83839	positive	MGI_C57BL6J_3513266	Nt5dc3	NCBI_Gene:103466,ENSEMBL:ENSMUSG00000054027	MGI:3513266	protein coding gene	5’-nucleotidase domain containing 3
10	gene	86.83909	86.87495	positive	MGI_C57BL6J_3826557	Gm16268	ENSEMBL:ENSMUSG00000089959	MGI:3826557	lncRNA gene	predicted gene 16268
10	gene	86.84120	87.00803	negative	MGI_C57BL6J_2178743	Stab2	NCBI_Gene:192188,ENSEMBL:ENSMUSG00000035459	MGI:2178743	protein coding gene	stabilin 2
10	gene	86.90876	86.91001	positive	MGI_C57BL6J_3809105	Gm16280	ENSEMBL:ENSMUSG00000089881	MGI:3809105	lncRNA gene	predicted gene 16280
10	pseudogene	86.90948	86.91272	positive	MGI_C57BL6J_3841260	Gm16270	NCBI_Gene:100416105,ENSEMBL:ENSMUSG00000089775	MGI:3841260	pseudogene	predicted gene 16270
10	gene	86.91350	86.91468	positive	MGI_C57BL6J_1890547	Tex18	NA	NA	unclassified non-coding RNA gene	testis expressed gene 18
10	gene	86.97222	87.02801	positive	MGI_C57BL6J_3826610	Gm16271	ENSEMBL:ENSMUSG00000089656	MGI:3826610	lncRNA gene	predicted gene 16271
10	pseudogene	86.99996	87.00073	positive	MGI_C57BL6J_3826558	Gm16269	NCBI_Gene:108167826,ENSEMBL:ENSMUSG00000089666	MGI:3826558	pseudogene	predicted gene 16269
10	gene	87.01893	87.05883	negative	MGI_C57BL6J_5595966	Gm36807	NCBI_Gene:102640833	MGI:5595966	protein coding gene	predicted gene, 36807
10	gene	87.05805	87.23060	positive	MGI_C57BL6J_1923890	1700113H08Rik	NCBI_Gene:76640,ENSEMBL:ENSMUSG00000047129	MGI:1923890	protein coding gene	RIKEN cDNA 1700113H08 gene
10	gene	87.23076	87.29756	positive	MGI_C57BL6J_1922532	4930555G07Rik	ENSEMBL:ENSMUSG00000112213	MGI:1922532	lncRNA gene	RIKEN cDNA 4930555G07 gene
10	gene	87.28949	87.29183	positive	MGI_C57BL6J_3641850	Gm10764	ENSEMBL:ENSMUSG00000103862	MGI:3641850	unclassified gene	predicted gene 10764
10	gene	87.36404	87.36415	negative	MGI_C57BL6J_5452968	Gm23191	ENSEMBL:ENSMUSG00000096692	MGI:5452968	snRNA gene	predicted gene, 23191
10	gene	87.49082	87.49366	negative	MGI_C57BL6J_96919	Ascl1	NCBI_Gene:17172,ENSEMBL:ENSMUSG00000020052	MGI:96919	protein coding gene	achaete-scute family bHLH transcription factor 1
10	gene	87.50283	87.50862	negative	MGI_C57BL6J_5589074	Gm29915	NCBI_Gene:102631620	MGI:5589074	lncRNA gene	predicted gene, 29915
10	pseudogene	87.50786	87.50848	positive	MGI_C57BL6J_6097476	Gm48120	ENSEMBL:ENSMUSG00000112460	MGI:6097476	pseudogene	predicted gene, 48120
10	gene	87.52179	87.58414	positive	MGI_C57BL6J_97473	Pah	NCBI_Gene:18478,ENSEMBL:ENSMUSG00000020051	MGI:97473	protein coding gene	phenylalanine hydroxylase
10	gene	87.57144	87.57175	positive	MGI_C57BL6J_1925634	2210420L05Rik	NA	NA	unclassified gene	RIKEN cDNA 2210420L05 gene
10	pseudogene	87.68858	87.68903	positive	MGI_C57BL6J_6097580	Gm48195	ENSEMBL:ENSMUSG00000112536	MGI:6097580	pseudogene	predicted gene, 48195
10	pseudogene	87.75914	87.75957	positive	MGI_C57BL6J_5012191	Gm20006	NCBI_Gene:100504000	MGI:5012191	pseudogene	predicted gene, 20006
10	gene	87.77724	87.79837	negative	MGI_C57BL6J_5589232	Gm30073	NCBI_Gene:102631839	MGI:5589232	lncRNA gene	predicted gene, 30073
10	gene	87.82638	87.86472	negative	MGI_C57BL6J_3841250	Igf1os	NCBI_Gene:627270,ENSEMBL:ENSMUSG00000058934	MGI:3841250	antisense lncRNA gene	insulin-like growth factor 1, opposite strand
10	gene	87.82989	87.82996	negative	MGI_C57BL6J_4413968	n-TKctt21	NCBI_Gene:102467349	MGI:4413968	tRNA gene	nuclear encoded tRNA lysine 21 (anticodon TTT)
10	gene	87.85827	87.93705	positive	MGI_C57BL6J_96432	Igf1	NCBI_Gene:16000,ENSEMBL:ENSMUSG00000020053	MGI:96432	protein coding gene	insulin-like growth factor 1
10	pseudogene	87.96667	87.96802	positive	MGI_C57BL6J_98879	Tyms-ps	NCBI_Gene:22172,ENSEMBL:ENSMUSG00000112222	MGI:98879	pseudogene	thymidylate synthase, pseudogene
10	gene	87.98046	87.98422	positive	MGI_C57BL6J_6097752	Gm48306	ENSEMBL:ENSMUSG00000112183	MGI:6097752	lncRNA gene	predicted gene, 48306
10	gene	88.03822	88.03968	positive	MGI_C57BL6J_6097754	Gm48307	ENSEMBL:ENSMUSG00000112235	MGI:6097754	unclassified gene	predicted gene, 48307
10	gene	88.03822	88.03968	negative	MGI_C57BL6J_3641951	Gm10763	NA	NA	unclassified gene	predicted gene 10763
10	gene	88.06807	88.09035	negative	MGI_C57BL6J_5589392	Gm30233	NCBI_Gene:102632060	MGI:5589392	lncRNA gene	predicted gene, 30233
10	gene	88.08820	88.08982	positive	MGI_C57BL6J_6097756	Gm48308	ENSEMBL:ENSMUSG00000112932	MGI:6097756	unclassified gene	predicted gene, 48308
10	gene	88.09107	88.09238	positive	MGI_C57BL6J_97629	Pmch	NCBI_Gene:110312,ENSEMBL:ENSMUSG00000035383	MGI:97629	protein coding gene	pro-melanin-concentrating hormone
10	gene	88.09140	88.14695	negative	MGI_C57BL6J_1922567	Parpbp	NCBI_Gene:75317,ENSEMBL:ENSMUSG00000035365	MGI:1922567	protein coding gene	PARP1 binding protein
10	gene	88.13438	88.13758	negative	MGI_C57BL6J_3647484	Gm6653	NCBI_Gene:626115,ENSEMBL:ENSMUSG00000112026	MGI:3647484	unclassified gene	predicted gene 6653
10	gene	88.13592	88.13753	positive	MGI_C57BL6J_1918118	4921515L22Rik	ENSEMBL:ENSMUSG00000112406	MGI:1918118	lncRNA gene	RIKEN cDNA 4921515L22 gene
10	gene	88.14697	88.17839	positive	MGI_C57BL6J_1919964	Nup37	NCBI_Gene:69736,ENSEMBL:ENSMUSG00000035351	MGI:1919964	protein coding gene	nucleoporin 37
10	gene	88.16496	88.16507	negative	MGI_C57BL6J_5456134	Gm26357	ENSEMBL:ENSMUSG00000088843	MGI:5456134	snRNA gene	predicted gene, 26357
10	gene	88.20109	88.26082	positive	MGI_C57BL6J_1914532	Washc3	NCBI_Gene:67282,ENSEMBL:ENSMUSG00000020056	MGI:1914532	protein coding gene	WASH complex subunit 3
10	pseudogene	88.24742	88.24863	positive	MGI_C57BL6J_3648865	Gm8415	NCBI_Gene:667000	MGI:3648865	pseudogene	predicted gene 8415

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
10	gene	88.45274	88.50407	negative	MGI_C57BL6J_2384841	Chpt1	NCBI_Gene:212862,ENSEMBL:ENSMUSG00000060002	MGI:2384841	protein coding gene	choline phosphotransferase 1
10	gene	88.45957	88.47324	positive	MGI_C57BL6J_109542	Sycp3	NCBI_Gene:20962,ENSEMBL:ENSMUSG00000020059	MGI:109542	protein coding gene	synaptonemal complex protein 3
10	gene	88.51828	88.60524	negative	MGI_C57BL6J_1336213	Mybpc1	NCBI_Gene:109272,ENSEMBL:ENSMUSG00000020061	MGI:1336213	protein coding gene	myosin binding protein C, slow-type
10	gene	88.60247	88.60534	positive	MGI_C57BL6J_6098429	Gm48752	ENSEMBL:ENSMUSG00000112841	MGI:6098429	unclassified gene	predicted gene, 48752
10	pseudogene	88.64136	88.64221	positive	MGI_C57BL6J_3643053	Gm8435	NCBI_Gene:667046,ENSEMBL:ENSMUSG00000112231	MGI:3643053	pseudogene	predicted gene 8435
10	pseudogene	88.65011	88.65823	negative	MGI_C57BL6J_6097458	Gm48106	ENSEMBL:ENSMUSG00000112428	MGI:6097458	pseudogene	predicted gene, 48106
10	pseudogene	88.67050	88.67127	negative	MGI_C57BL6J_6097461	Gm48108	ENSEMBL:ENSMUSG00000112869	MGI:6097461	pseudogene	predicted gene, 48108
10	pseudogene	88.67302	88.67339	positive	MGI_C57BL6J_5588966	Gm29807	NCBI_Gene:101056238,ENSEMBL:ENSMUSG00000112885	MGI:5588966	pseudogene	predicted gene, 29807
10	gene	88.67477	88.68502	negative	MGI_C57BL6J_1341168	Spic	NCBI_Gene:20728,ENSEMBL:ENSMUSG00000004359	MGI:1341168	protein coding gene	Spi-C transcription factor (Spi-1/PU.1 related)
10	pseudogene	88.69101	88.70511	positive	MGI_C57BL6J_5825829	Gm46192	NCBI_Gene:108167773,ENSEMBL:ENSMUSG00000111919	MGI:5825829	pseudogene	predicted gene, 46192
10	gene	88.71001	88.71013	negative	MGI_C57BL6J_4421927	n-R5s79	ENSEMBL:ENSMUSG00000065005	MGI:4421927	rRNA gene	nuclear encoded rRNA 5S 79
10	pseudogene	88.71565	88.71609	negative	MGI_C57BL6J_6097511	Gm48144	ENSEMBL:ENSMUSG00000112467	MGI:6097511	pseudogene	predicted gene, 48144
10	pseudogene	88.72954	88.73110	negative	MGI_C57BL6J_3643371	Gm4925	NCBI_Gene:237433,ENSEMBL:ENSMUSG00000069540	MGI:3643371	pseudogene	predicted gene 4925
10	gene	88.73086	88.74409	positive	MGI_C57BL6J_99436	Arl1	NCBI_Gene:104303,ENSEMBL:ENSMUSG00000060904	MGI:99436	protein coding gene	ADP-ribosylation factor-like 1
10	gene	88.74661	88.82681	negative	MGI_C57BL6J_1917933	Utp20	NCBI_Gene:70683,ENSEMBL:ENSMUSG00000004356	MGI:1917933	protein coding gene	UTP20 small subunit processome component
10	gene	88.87460	88.87580	negative	MGI_C57BL6J_1924528	9430024C03Rik	NA	NA	unclassified gene	RIKEN cDNA 9430024C03 gene
10	gene	88.88599	88.92951	positive	MGI_C57BL6J_2384916	Slc5a8	NCBI_Gene:216225,ENSEMBL:ENSMUSG00000020062	MGI:2384916	protein coding gene	solute carrier family 5 (iodide transporter), member 8
10	gene	88.94893	89.34508	negative	MGI_C57BL6J_2443344	Ano4	NCBI_Gene:320091,ENSEMBL:ENSMUSG00000035189	MGI:2443344	protein coding gene	anoctamin 4
10	gene	89.25713	89.25914	positive	MGI_C57BL6J_5589928	Gm30769	NCBI_Gene:102632785	MGI:5589928	lncRNA gene	predicted gene, 30769
10	gene	89.40882	89.44437	negative	MGI_C57BL6J_1918780	Gas2l3	NCBI_Gene:237436,ENSEMBL:ENSMUSG00000074802	MGI:1918780	protein coding gene	growth arrest-specific 2 like 3
10	gene	89.45423	89.53365	negative	MGI_C57BL6J_1352464	Nr1h4	NCBI_Gene:20186,ENSEMBL:ENSMUSG00000047638	MGI:1352464	protein coding gene	nuclear receptor subfamily 1, group H, member 4
10	pseudogene	89.55508	89.55572	negative	MGI_C57BL6J_6097428	Gm48087	ENSEMBL:ENSMUSG00000112272	MGI:6097428	pseudogene	predicted gene, 48087
10	gene	89.57402	89.62125	negative	MGI_C57BL6J_3039629	Slc17a8	NCBI_Gene:216227,ENSEMBL:ENSMUSG00000019935	MGI:3039629	protein coding gene	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8
10	gene	89.63872	89.68629	negative	MGI_C57BL6J_1289172	Scyl2	NCBI_Gene:213326,ENSEMBL:ENSMUSG00000069539	MGI:1289172	protein coding gene	SCY1-like 2 (S. cerevisiae)
10	gene	89.68636	89.70087	positive	MGI_C57BL6J_1916252	1500026H17Rik	NCBI_Gene:69002,ENSEMBL:ENSMUSG00000097383	MGI:1916252	lncRNA gene	RIKEN cDNA 1500026H17 gene
10	gene	89.71197	89.73231	negative	MGI_C57BL6J_1914269	Actr6	NCBI_Gene:67019,ENSEMBL:ENSMUSG00000019948	MGI:1914269	protein coding gene	ARP6 actin-related protein 6
10	gene	89.73678	89.74141	negative	MGI_C57BL6J_5590122	Gm30963	NCBI_Gene:102633042	MGI:5590122	lncRNA gene	predicted gene, 30963
10	gene	89.74362	89.74582	negative	MGI_C57BL6J_3642333	E330037I15Rik	NA	NA	unclassified gene	RIKEN cDNA E330037I15 gene
10	gene	89.74499	89.81989	positive	MGI_C57BL6J_2442888	Uhrf1bp1l	NCBI_Gene:75089,ENSEMBL:ENSMUSG00000019951	MGI:2442888	protein coding gene	UHRF1 (ICBP90) binding protein 1-like
10	gene	89.81216	89.81389	positive	MGI_C57BL6J_5590249	Gm31090	NCBI_Gene:102633203	MGI:5590249	lncRNA gene	predicted gene, 31090
10	gene	89.82134	89.82145	negative	MGI_C57BL6J_5455957	Gm26180	ENSEMBL:ENSMUSG00000093967	MGI:5455957	snRNA gene	predicted gene, 26180
10	gene	89.82288	89.82654	positive	MGI_C57BL6J_5825875	Gm46238	NCBI_Gene:108167827	MGI:5825875	protein coding gene	predicted gene, 46238
10	gene	89.87302	90.97330	positive	MGI_C57BL6J_1924781	Anks1b	NCBI_Gene:77531,ENSEMBL:ENSMUSG00000058589	MGI:1924781	protein coding gene	ankyrin repeat and sterile alpha motif domain containing 1B
10	gene	89.87827	89.87860	positive	MGI_C57BL6J_3782360	Gm4184	NCBI_Gene:100043039	MGI:3782360	protein coding gene	predicted gene 4184
10	pseudogene	90.13298	90.13482	negative	MGI_C57BL6J_3645288	Gm5780	NCBI_Gene:544719,ENSEMBL:ENSMUSG00000112140	MGI:3645288	pseudogene	predicted gene 5780
10	gene	90.42659	90.42806	positive	MGI_C57BL6J_2441893	C230047L17Rik	NA	NA	unclassified gene	RIKEN cDNA C230047L17 gene
10	gene	90.45091	90.45100	positive	MGI_C57BL6J_5452379	Gm22602	ENSEMBL:ENSMUSG00000088221	MGI:5452379	snRNA gene	predicted gene, 22602
10	gene	90.59763	90.59916	positive	MGI_C57BL6J_1920193	2900018E21Rik	NA	NA	unclassified gene	RIKEN cDNA 2900018E21 gene
10	gene	90.72896	90.73633	positive	MGI_C57BL6J_6096636	Gm47591	ENSEMBL:ENSMUSG00000112153	MGI:6096636	lncRNA gene	predicted gene, 47591
10	pseudogene	90.74999	90.75069	negative	MGI_C57BL6J_5010855	Gm18670	NCBI_Gene:100417532,ENSEMBL:ENSMUSG00000111909	MGI:5010855	pseudogene	predicted gene, 18670
10	pseudogene	90.75087	90.75107	negative	MGI_C57BL6J_6096633	Gm47589	ENSEMBL:ENSMUSG00000112507	MGI:6096633	pseudogene	predicted gene, 47589
10	gene	90.81308	90.81439	positive	MGI_C57BL6J_6096638	Gm47592	ENSEMBL:ENSMUSG00000112015	MGI:6096638	unclassified gene	predicted gene, 47592
10	gene	90.85110	90.85407	positive	MGI_C57BL6J_6096634	Gm47590	ENSEMBL:ENSMUSG00000112601	MGI:6096634	unclassified gene	predicted gene, 47590
10	gene	90.98931	91.08277	negative	MGI_C57BL6J_1306796	Apaf1	NCBI_Gene:11783,ENSEMBL:ENSMUSG00000019979	MGI:1306796	protein coding gene	apoptotic peptidase activating factor 1
10	gene	91.00574	91.00584	positive	MGI_C57BL6J_5455167	Gm25390	ENSEMBL:ENSMUSG00000087966	MGI:5455167	snRNA gene	predicted gene, 25390
10	gene	91.08269	91.10261	positive	MGI_C57BL6J_1914704	Ikbip	NCBI_Gene:67454,ENSEMBL:ENSMUSG00000019975	MGI:1914704	protein coding gene	IKBKB interacting protein
10	gene	91.11378	91.11425	negative	MGI_C57BL6J_1925088	A930036M01Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA A930036M01 gene
10	gene	91.11657	91.12406	negative	MGI_C57BL6J_1353498	Slc25a3	NCBI_Gene:18674,ENSEMBL:ENSMUSG00000061904	MGI:1353498	protein coding gene	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
10	gene	91.11829	91.11854	negative	MGI_C57BL6J_5453896	Gm24119	ENSEMBL:ENSMUSG00000077167	MGI:5453896	snoRNA gene	predicted gene, 24119
10	gene	91.14757	91.18172	negative	MGI_C57BL6J_106920	Tmpo	NCBI_Gene:21917,ENSEMBL:ENSMUSG00000019961	MGI:106920	protein coding gene	thymopoietin
10	gene	91.14951	91.15059	positive	MGI_C57BL6J_5477259	Gm26765	ENSEMBL:ENSMUSG00000097664	MGI:5477259	lncRNA gene	predicted gene, 26765
10	gene	91.15008	91.15164	negative	MGI_C57BL6J_1923371	5830485P09Rik	NA	NA	unclassified gene	RIKEN cDNA 5830485P09 gene
10	gene	91.18141	91.18148	negative	MGI_C57BL6J_4414067	n-TWcca2	NCBI_Gene:102467609	MGI:4414067	tRNA gene	nuclear encoded tRNA trytophan 2 (anticodon CCA)
10	gene	91.18210	91.18217	negative	MGI_C57BL6J_4413767	n-TDgtc16	NCBI_Gene:102467266	MGI:4413767	tRNA gene	nuclear encoded tRNA aspartic acid 16 (anticodon GTC)
10	gene	91.20826	91.22064	negative	MGI_C57BL6J_1922441	4930534H03Rik	NCBI_Gene:102633753,ENSEMBL:ENSMUSG00000111544	MGI:1922441	lncRNA gene	RIKEN cDNA 4930534H03 gene
10	pseudogene	91.22819	91.22850	positive	MGI_C57BL6J_6095807	Gm47081	ENSEMBL:ENSMUSG00000110870	MGI:6095807	pseudogene	predicted gene, 47081
10	pseudogene	91.25214	91.25950	negative	MGI_C57BL6J_5010890	Gm18705	NCBI_Gene:100417593,ENSEMBL:ENSMUSG00000110847	MGI:5010890	pseudogene	predicted gene, 18705
10	gene	91.31034	91.31245	positive	MGI_C57BL6J_6095808	Gm47082	ENSEMBL:ENSMUSG00000111525	MGI:6095808	lncRNA gene	predicted gene, 47082
10	gene	91.41060	91.43962	positive	MGI_C57BL6J_5623621	Gm40736	NCBI_Gene:105245258	MGI:5623621	lncRNA gene	predicted gene, 40736
10	pseudogene	91.42335	91.42373	positive	MGI_C57BL6J_6095810	Gm47083	ENSEMBL:ENSMUSG00000111591	MGI:6095810	pseudogene	predicted gene, 47083
10	pseudogene	91.44822	91.44838	negative	MGI_C57BL6J_6095811	Gm47084	ENSEMBL:ENSMUSG00000111051	MGI:6095811	pseudogene	predicted gene, 47084
10	pseudogene	91.64070	91.64089	negative	MGI_C57BL6J_6095821	Gm47091	ENSEMBL:ENSMUSG00000111782	MGI:6095821	pseudogene	predicted gene, 47091
10	gene	91.88859	91.95362	positive	MGI_C57BL6J_5590751	Gm31592	NCBI_Gene:102633867,ENSEMBL:ENSMUSG00000111657	MGI:5590751	lncRNA gene	predicted gene, 31592
10	gene	91.98386	91.98743	positive	MGI_C57BL6J_5590832	Gm31673	NCBI_Gene:102633980	MGI:5590832	lncRNA gene	predicted gene, 31673
10	gene	92.07104	92.16518	negative	MGI_C57BL6J_1099806	Rmst	NCBI_Gene:110333,ENSEMBL:ENSMUSG00000112117	MGI:1099806	lncRNA gene	rhabdomyosarcoma 2 associated transcript (non-coding RNA)
10	gene	92.07120	92.07208	negative	MGI_C57BL6J_3763716	BI734849	NA	NA	unclassified gene	expressed sequence BI734849
10	gene	92.07166	92.07182	negative	MGI_C57BL6J_5530926	Gm27544	ENSEMBL:ENSMUSG00000098979	MGI:5530926	unclassified non-coding RNA gene	predicted gene, 27544
10	gene	92.07209	92.07219	negative	MGI_C57BL6J_3618729	Mir135a-2	miRBase:MI0000715,NCBI_Gene:723955,ENSEMBL:ENSMUSG00000065524	MGI:3618729	miRNA gene	microRNA 135a-2
10	gene	92.07517	92.07536	negative	MGI_C57BL6J_5531381	Gm27999	ENSEMBL:ENSMUSG00000098394	MGI:5531381	unclassified non-coding RNA gene	predicted gene, 27999
10	gene	92.07549	92.07565	negative	MGI_C57BL6J_5530990	Gm27608	ENSEMBL:ENSMUSG00000099136	MGI:5530990	unclassified non-coding RNA gene	predicted gene, 27608
10	gene	92.10166	92.10193	negative	MGI_C57BL6J_5530970	Gm27588	ENSEMBL:ENSMUSG00000098664	MGI:5530970	unclassified non-coding RNA gene	predicted gene, 27588
10	gene	92.10371	92.10391	negative	MGI_C57BL6J_5531135	Gm27753	ENSEMBL:ENSMUSG00000098891	MGI:5531135	unclassified non-coding RNA gene	predicted gene, 27753
10	gene	92.13322	92.13335	negative	MGI_C57BL6J_5530964	Gm27582	ENSEMBL:ENSMUSG00000098662	MGI:5530964	unclassified non-coding RNA gene	predicted gene, 27582
10	gene	92.13496	92.13507	negative	MGI_C57BL6J_5530748	Gm27366	ENSEMBL:ENSMUSG00000098526	MGI:5530748	unclassified non-coding RNA gene	predicted gene, 27366
10	gene	92.13570	92.13581	negative	MGI_C57BL6J_5530801	Gm27419	ENSEMBL:ENSMUSG00000099307	MGI:5530801	unclassified non-coding RNA gene	predicted gene, 27419
10	gene	92.13714	92.13722	negative	MGI_C57BL6J_4834231	Mir1251	miRBase:MI0014021,NCBI_Gene:100526517,ENSEMBL:ENSMUSG00000093227	MGI:4834231	miRNA gene	microRNA 1251
10	gene	92.16210	92.16469	positive	MGI_C57BL6J_5477194	Gm26700	ENSEMBL:ENSMUSG00000097201	MGI:5477194	lncRNA gene	predicted gene, 26700
10	gene	92.17130	92.37537	negative	MGI_C57BL6J_5434113	Gm20757	NCBI_Gene:627800,ENSEMBL:ENSMUSG00000098040	MGI:5434113	lncRNA gene	predicted gene, 20757
10	pseudogene	92.22284	92.23768	negative	MGI_C57BL6J_3648240	Gm8512	NCBI_Gene:667203,ENSEMBL:ENSMUSG00000111104	MGI:3648240	pseudogene	predicted gene 8512
10	pseudogene	92.25859	92.25928	positive	MGI_C57BL6J_6095874	Gm47124	ENSEMBL:ENSMUSG00000111776	MGI:6095874	pseudogene	predicted gene, 47124
10	gene	92.38966	92.47119	negative	MGI_C57BL6J_5623623	Gm40738	NCBI_Gene:105245260	MGI:5623623	lncRNA gene	predicted gene, 40738
10	gene	92.40101	92.41750	positive	MGI_C57BL6J_1921071	4930401A07Rik	ENSEMBL:ENSMUSG00000110794	MGI:1921071	lncRNA gene	RIKEN cDNA 4930401A07 gene
10	pseudogene	92.48421	92.48496	positive	MGI_C57BL6J_5010228	Gm18043	NCBI_Gene:100416329,ENSEMBL:ENSMUSG00000111604	MGI:5010228	pseudogene	predicted gene, 18043
10	gene	92.48682	92.48688	positive	MGI_C57BL6J_5455661	Gm25884	ENSEMBL:ENSMUSG00000088407	MGI:5455661	snRNA gene	predicted gene, 25884
10	pseudogene	92.54221	92.54374	negative	MGI_C57BL6J_3646193	Gm4800	NCBI_Gene:216229,ENSEMBL:ENSMUSG00000111759	MGI:3646193	pseudogene	predicted gene 4800
10	pseudogene	92.58706	92.58737	positive	MGI_C57BL6J_3781700	Gm3523	NCBI_Gene:102636707,ENSEMBL:ENSMUSG00000111121	MGI:3781700	pseudogene	predicted gene 3523
10	gene	92.58721	92.58731	positive	MGI_C57BL6J_5452359	Gm22582	ENSEMBL:ENSMUSG00000076238	MGI:5452359	miRNA gene	predicted gene, 22582
10	gene	92.64409	92.65485	positive	MGI_C57BL6J_5590981	Gm31822	NCBI_Gene:102634175,ENSEMBL:ENSMUSG00000111470	MGI:5590981	lncRNA gene	predicted gene, 31822
10	gene	92.68475	92.72368	negative	MGI_C57BL6J_97293	Nedd1	NCBI_Gene:17997,ENSEMBL:ENSMUSG00000019988	MGI:97293	protein coding gene	neural precursor cell expressed, developmentally down-regulated gene 1
10	gene	92.68886	92.68901	negative	MGI_C57BL6J_5454018	Gm24241	ENSEMBL:ENSMUSG00000088412	MGI:5454018	snoRNA gene	predicted gene, 24241
10	pseudogene	92.70608	92.70626	negative	MGI_C57BL6J_6097289	Gm47993	ENSEMBL:ENSMUSG00000111432	MGI:6097289	pseudogene	predicted gene, 47993
10	gene	92.71751	92.72369	negative	MGI_C57BL6J_6215303	Gm49783	ENSEMBL:ENSMUSG00000111740	MGI:6215303	unclassified gene	predicted gene, 49783
10	gene	92.77561	93.08359	negative	MGI_C57BL6J_1922208	Cfap54	NCBI_Gene:380654,ENSEMBL:ENSMUSG00000020014	MGI:1922208	protein coding gene	cilia and flagella associated protein 54
10	gene	93.07481	93.07693	positive	MGI_C57BL6J_5623624	Gm40739	NCBI_Gene:105245261	MGI:5623624	lncRNA gene	predicted gene, 40739
10	gene	93.08420	93.09373	positive	MGI_C57BL6J_5591627	Gm32468	NCBI_Gene:102635028,ENSEMBL:ENSMUSG00000111013	MGI:5591627	lncRNA gene	predicted gene, 32468
10	gene	93.12642	93.12832	positive	MGI_C57BL6J_5623625	Gm40740	NCBI_Gene:105245262	MGI:5623625	lncRNA gene	predicted gene, 40740
10	gene	93.14321	93.14547	positive	MGI_C57BL6J_5623626	Gm40741	NCBI_Gene:105245263	MGI:5623626	lncRNA gene	predicted gene, 40741
10	gene	93.16088	93.26707	positive	MGI_C57BL6J_97517	Cdk17	NCBI_Gene:237459,ENSEMBL:ENSMUSG00000020015	MGI:97517	protein coding gene	cyclin-dependent kinase 17
10	gene	93.16278	93.16290	positive	MGI_C57BL6J_3836967	Mir1931	miRBase:MI0009920,NCBI_Gene:100316689,ENSEMBL:ENSMUSG00000089214	MGI:3836967	miRNA gene	microRNA 1931
10	gene	93.24741	93.31116	negative	MGI_C57BL6J_101762	Elk3	NCBI_Gene:13713,ENSEMBL:ENSMUSG00000008398	MGI:101762	protein coding gene	ELK3, member of ETS oncogene family
10	gene	93.27554	93.27881	positive	MGI_C57BL6J_5591763	Gm32604	NA	NA	lncRNA gene	predicted gene%2c 32604
10	gene	93.28498	93.28947	positive	MGI_C57BL6J_5591710	Gm32551	NCBI_Gene:102635134	MGI:5591710	lncRNA gene	predicted gene, 32551
10	gene	93.31733	93.32273	positive	MGI_C57BL6J_5591847	Gm32688	NCBI_Gene:102635316,ENSEMBL:ENSMUSG00000111531	MGI:5591847	lncRNA gene	predicted gene, 32688
10	gene	93.33539	93.34888	positive	MGI_C57BL6J_5009823	Gm17745	NCBI_Gene:432488,ENSEMBL:ENSMUSG00000110647	MGI:5009823	lncRNA gene	predicted gene, 17745
10	pseudogene	93.39709	93.39727	negative	MGI_C57BL6J_6096240	Gm47344	ENSEMBL:ENSMUSG00000111316	MGI:6096240	pseudogene	predicted gene, 47344
10	gene	93.43028	93.43196	negative	MGI_C57BL6J_5623627	Gm40742	NCBI_Gene:105245264	MGI:5623627	lncRNA gene	predicted gene, 40742
10	gene	93.43311	93.43316	positive	MGI_C57BL6J_5531256	Mir7688	miRBase:MI0025041,NCBI_Gene:102465791,ENSEMBL:ENSMUSG00000098679	MGI:5531256	miRNA gene	microRNA 7688
10	gene	93.45298	93.45305	negative	MGI_C57BL6J_4413759	n-TDgtc8	NCBI_Gene:102467629	MGI:4413759	tRNA gene	nuclear encoded tRNA aspartic acid 8 (anticodon GTC)
10	gene	93.45340	93.48490	positive	MGI_C57BL6J_96836	Lta4h	NCBI_Gene:16993,ENSEMBL:ENSMUSG00000015889	MGI:96836	protein coding gene	leukotriene A4 hydrolase
10	gene	93.48877	93.51930	positive	MGI_C57BL6J_96010	Hal	NCBI_Gene:15109,ENSEMBL:ENSMUSG00000020017	MGI:96010	protein coding gene	histidine ammonia lyase
10	gene	93.52334	93.54004	negative	MGI_C57BL6J_1919011	Amdhd1	NCBI_Gene:71761,ENSEMBL:ENSMUSG00000015890	MGI:1919011	protein coding gene	amidohydrolase domain containing 1
10	gene	93.54057	93.58433	positive	MGI_C57BL6J_2444738	Ccdc38	NCBI_Gene:237465,ENSEMBL:ENSMUSG00000036168	MGI:2444738	protein coding gene	coiled-coil domain containing 38
10	gene	93.58303	93.58971	negative	MGI_C57BL6J_1917128	Snrpf	NCBI_Gene:69878,ENSEMBL:ENSMUSG00000020018	MGI:1917128	protein coding gene	small nuclear ribonucleoprotein polypeptide F
10	gene	93.58941	93.60524	positive	MGI_C57BL6J_1921704	4933408J17Rik	NCBI_Gene:74454,ENSEMBL:ENSMUSG00000097407	MGI:1921704	lncRNA gene	RIKEN cDNA 4933408J17 gene
10	gene	93.61886	93.63432	positive	MGI_C57BL6J_6095926	Gm47156	ENSEMBL:ENSMUSG00000111366	MGI:6095926	lncRNA gene	predicted gene, 47156
10	gene	93.64068	93.74721	positive	MGI_C57BL6J_1888978	Ntn4	NCBI_Gene:57764,ENSEMBL:ENSMUSG00000020019	MGI:1888978	protein coding gene	netrin 4
10	pseudogene	93.66524	93.66585	negative	MGI_C57BL6J_3647055	Gm8580	NCBI_Gene:667338,ENSEMBL:ENSMUSG00000090159	MGI:3647055	pseudogene	predicted gene 8580
10	gene	93.67422	93.68332	negative	MGI_C57BL6J_3801763	Gm15915	NCBI_Gene:100504069,ENSEMBL:ENSMUSG00000085723	MGI:3801763	lncRNA gene	predicted gene 15915
10	gene	93.72673	93.72821	negative	MGI_C57BL6J_3802140	Gm15963	ENSEMBL:ENSMUSG00000086891	MGI:3802140	lncRNA gene	predicted gene 15963
10	pseudogene	93.77861	93.77977	positive	MGI_C57BL6J_3781748	Gm3571	NCBI_Gene:100041907,ENSEMBL:ENSMUSG00000090610	MGI:3781748	pseudogene	predicted gene 3571
10	gene	93.80730	93.80740	positive	MGI_C57BL6J_5456016	Gm26239	ENSEMBL:ENSMUSG00000096598	MGI:5456016	snRNA gene	predicted gene, 26239
10	gene	93.81997	93.85943	positive	MGI_C57BL6J_3045318	Usp44	NCBI_Gene:327799,ENSEMBL:ENSMUSG00000020020	MGI:3045318	protein coding gene	ubiquitin specific peptidase 44
10	gene	93.85849	93.89709	negative	MGI_C57BL6J_1929701	Metap2	NCBI_Gene:56307,ENSEMBL:ENSMUSG00000036112	MGI:1929701	protein coding gene	methionine aminopeptidase 2
10	gene	93.89716	93.90196	positive	MGI_C57BL6J_1922173	4930471D02Rik	ENSEMBL:ENSMUSG00000097689	MGI:1922173	lncRNA gene	RIKEN cDNA 4930471D02 gene
10	gene	93.91617	93.91634	negative	MGI_C57BL6J_5455739	Gm25962	ENSEMBL:ENSMUSG00000087798	MGI:5455739	snoRNA gene	predicted gene, 25962
10	pseudogene	93.91909	93.93627	positive	MGI_C57BL6J_6097484	Gm48126	ENSEMBL:ENSMUSG00000114757	MGI:6097484	pseudogene	predicted gene, 48126
10	gene	93.93917	94.03582	negative	MGI_C57BL6J_2143698	Vezt	NCBI_Gene:215008,ENSEMBL:ENSMUSG00000036099	MGI:2143698	protein coding gene	vezatin, adherens junctions transmembrane protein
10	gene	93.96152	93.96493	negative	MGI_C57BL6J_2143686	A630071D13Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA A630071D13 gene
10	gene	93.96377	93.96386	negative	MGI_C57BL6J_3619347	Mir331	miRBase:MI0000609,NCBI_Gene:723908,ENSEMBL:ENSMUSG00000065607	MGI:3619347	miRNA gene	microRNA 331
10	pseudogene	94.02808	94.02836	positive	MGI_C57BL6J_6097573	Gm48191	ENSEMBL:ENSMUSG00000111349	MGI:6097573	pseudogene	predicted gene, 48191
10	gene	94.03401	94.03580	negative	MGI_C57BL6J_6215053	Gm49628	ENSEMBL:ENSMUSG00000110869	MGI:6215053	unclassified gene	predicted gene, 49628
10	gene	94.03600	94.14534	positive	MGI_C57BL6J_1261419	Fgd6	NCBI_Gene:13998,ENSEMBL:ENSMUSG00000020021	MGI:1261419	protein coding gene	FYVE, RhoGEF and PH domain containing 6
10	pseudogene	94.09748	94.09815	negative	MGI_C57BL6J_5010576	Gm18391	NCBI_Gene:100417060,ENSEMBL:ENSMUSG00000110753	MGI:5010576	pseudogene	predicted gene, 18391
10	gene	94.10874	94.11115	positive	MGI_C57BL6J_6097846	Gm48372	ENSEMBL:ENSMUSG00000111539	MGI:6097846	unclassified gene	predicted gene, 48372
10	gene	94.14751	94.19722	positive	MGI_C57BL6J_1352465	Nr2c1	NCBI_Gene:22025,ENSEMBL:ENSMUSG00000005897	MGI:1352465	protein coding gene	nuclear receptor subfamily 2, group C, member 1
10	gene	94.18449	94.18457	negative	MGI_C57BL6J_5455899	Gm26122	ENSEMBL:ENSMUSG00000065296	MGI:5455899	snRNA gene	predicted gene, 26122
10	gene	94.19872	94.22144	positive	MGI_C57BL6J_1913664	Ndufa12	NCBI_Gene:66414,ENSEMBL:ENSMUSG00000020022	MGI:1913664	protein coding gene	NADH:ubiquinone oxidoreductase subunit A12
10	gene	94.23056	94.23861	negative	MGI_C57BL6J_5591908	Gm32749	NCBI_Gene:102635396	MGI:5591908	lncRNA gene	predicted gene, 32749
10	gene	94.29366	94.29870	negative	MGI_C57BL6J_3648918	Gm4792	NCBI_Gene:215472,ENSEMBL:ENSMUSG00000053420	MGI:3648918	protein coding gene	predicted gene 4792
10	gene	94.31191	94.59096	positive	MGI_C57BL6J_2442900	Tmcc3	NCBI_Gene:319880,ENSEMBL:ENSMUSG00000020023	MGI:2442900	protein coding gene	transmembrane and coiled coil domains 3
10	gene	94.40889	94.41073	positive	MGI_C57BL6J_3801971	Gm16155	ENSEMBL:ENSMUSG00000085409	MGI:3801971	lncRNA gene	predicted gene 16155
10	gene	94.41796	94.42863	negative	MGI_C57BL6J_5591986	Gm32827	NCBI_Gene:102635509	MGI:5591986	lncRNA gene	predicted gene, 32827
10	gene	94.51285	94.51478	negative	MGI_C57BL6J_5623628	Gm40743	NCBI_Gene:105245265	MGI:5623628	lncRNA gene	predicted gene, 40743
10	gene	94.56783	94.61208	negative	MGI_C57BL6J_3801736	Tmcc3os	ENSEMBL:ENSMUSG00000086269	MGI:3801736	antisense lncRNA gene	transmembrane and coiled coil domains 3, opposite strand
10	gene	94.58614	94.58620	negative	MGI_C57BL6J_5530918	Mir7211	miRBase:MI0023706,NCBI_Gene:102466817,ENSEMBL:ENSMUSG00000098544	MGI:5530918	miRNA gene	microRNA 7211
10	gene	94.60005	94.62370	negative	MGI_C57BL6J_5592057	Gm32898	NCBI_Gene:102635607	MGI:5592057	lncRNA gene	predicted gene, 32898
10	gene	94.62054	94.64866	positive	MGI_C57BL6J_6098271	Gm48657	ENSEMBL:ENSMUSG00000112477	MGI:6098271	lncRNA gene	predicted gene, 48657
10	pseudogene	94.65280	94.65305	negative	MGI_C57BL6J_6098273	Gm48658	ENSEMBL:ENSMUSG00000112473	MGI:6098273	pseudogene	predicted gene, 48658
10	gene	94.67103	94.68861	negative	MGI_C57BL6J_1914973	Cep83os	NCBI_Gene:67723,ENSEMBL:ENSMUSG00000097164	MGI:1914973	bidirectional promoter lncRNA gene	centrosomal protein 83, opposite strand
10	gene	94.68570	94.68862	positive	MGI_C57BL6J_6118596	Gm49167	ENSEMBL:ENSMUSG00000112203	MGI:6118596	unclassified gene	predicted gene, 49167
10	gene	94.68850	94.79085	positive	MGI_C57BL6J_1924298	Cep83	NCBI_Gene:77048,ENSEMBL:ENSMUSG00000020024	MGI:1924298	protein coding gene	centrosomal protein 83
10	gene	94.78197	94.78716	negative	MGI_C57BL6J_6098317	Gm48689	ENSEMBL:ENSMUSG00000112669	MGI:6098317	lncRNA gene	predicted gene, 48689
10	gene	94.79087	94.94527	negative	MGI_C57BL6J_1890127	Plxnc1	NCBI_Gene:54712,ENSEMBL:ENSMUSG00000074785	MGI:1890127	protein coding gene	plexin C1
10	gene	94.82153	94.82166	negative	MGI_C57BL6J_5453963	Gm24186	ENSEMBL:ENSMUSG00000088608	MGI:5453963	rRNA gene	predicted gene, 24186
10	gene	94.88131	94.88379	negative	MGI_C57BL6J_6098369	Gm48718	ENSEMBL:ENSMUSG00000112736	MGI:6098369	unclassified gene	predicted gene, 48718
10	gene	94.94859	94.94889	positive	MGI_C57BL6J_5455043	Gm25266	ENSEMBL:ENSMUSG00000089146	MGI:5455043	unclassified non-coding RNA gene	predicted gene, 25266
10	gene	94.96164	94.96524	positive	MGI_C57BL6J_5623629	Gm40744	NCBI_Gene:105245266	MGI:5623629	lncRNA gene	predicted gene, 40744
10	gene	94.99395	94.99944	negative	MGI_C57BL6J_6098611	Gm48867	ENSEMBL:ENSMUSG00000112277	MGI:6098611	lncRNA gene	predicted gene, 48867
10	gene	95.11638	95.11773	positive	MGI_C57BL6J_6098613	Gm48868	ENSEMBL:ENSMUSG00000112677	MGI:6098613	unclassified gene	predicted gene, 48868
10	gene	95.12058	95.14583	negative	MGI_C57BL6J_5588843	Gm29684	NCBI_Gene:628062,ENSEMBL:ENSMUSG00000112481	MGI:5588843	lncRNA gene	predicted gene, 29684
10	gene	95.13261	95.14062	negative	MGI_C57BL6J_5592250	Gm33091	NCBI_Gene:102635855,ENSEMBL:ENSMUSG00000112501	MGI:5592250	lncRNA gene	predicted gene, 33091
10	gene	95.16036	95.16566	positive	MGI_C57BL6J_6098623	Gm48874	ENSEMBL:ENSMUSG00000112682	MGI:6098623	unclassified gene	predicted gene, 48874
10	gene	95.17474	95.32413	negative	MGI_C57BL6J_1336168	Cradd	NCBI_Gene:12905,ENSEMBL:ENSMUSG00000045867	MGI:1336168	protein coding gene	CASP2 and RIPK1 domain containing adaptor with death domain
10	gene	95.26123	95.26498	negative	MGI_C57BL6J_2443745	A630089K24Rik	NA	NA	unclassified gene	RIKEN cDNA A630089K24 gene
10	gene	95.31287	95.31485	negative	MGI_C57BL6J_6098634	Gm48880	ENSEMBL:ENSMUSG00000112744	MGI:6098634	unclassified gene	predicted gene, 48880
10	gene	95.31825	95.32436	positive	MGI_C57BL6J_6098637	Gm48882	ENSEMBL:ENSMUSG00000112593	MGI:6098637	lncRNA gene	predicted gene, 48882
10	gene	95.33628	95.36620	positive	MGI_C57BL6J_1916879	2310039L15Rik	NCBI_Gene:69629,ENSEMBL:ENSMUSG00000100550	MGI:1916879	lncRNA gene	RIKEN cDNA 2310039L15 gene
10	gene	95.38390	95.41725	negative	MGI_C57BL6J_1201787	Socs2	NCBI_Gene:216233,ENSEMBL:ENSMUSG00000020027	MGI:1201787	protein coding gene	suppressor of cytokine signaling 2
10	gene	95.41312	95.41460	positive	MGI_C57BL6J_5592389	Gm33230	NCBI_Gene:102636052	MGI:5592389	lncRNA gene	predicted gene, 33230
10	gene	95.41738	95.42864	positive	MGI_C57BL6J_1917773	5730420D15Rik	NCBI_Gene:70523,ENSEMBL:ENSMUSG00000097766	MGI:1917773	lncRNA gene	RIKEN cDNA 5730420D15 gene
10	gene	95.44532	95.46122	negative	MGI_C57BL6J_6096651	Gm47599	ENSEMBL:ENSMUSG00000112261	MGI:6096651	lncRNA gene	predicted gene, 47599
10	pseudogene	95.45467	95.45497	negative	MGI_C57BL6J_6096653	Gm47600	ENSEMBL:ENSMUSG00000112725	MGI:6096653	pseudogene	predicted gene, 47600
10	pseudogene	95.47699	95.47841	negative	MGI_C57BL6J_3781795	Gm3619	NCBI_Gene:100042004,ENSEMBL:ENSMUSG00000112450	MGI:3781795	pseudogene	predicted gene 3619
10	gene	95.48081	95.50199	negative	MGI_C57BL6J_1333774	Mrpl42	NCBI_Gene:67270,ENSEMBL:ENSMUSG00000062981	MGI:1333774	protein coding gene	mitochondrial ribosomal protein L42
10	gene	95.51223	95.51479	negative	MGI_C57BL6J_5825876	Gm46239	NCBI_Gene:108167829	MGI:5825876	lncRNA gene	predicted gene, 46239
10	gene	95.51515	95.54566	positive	MGI_C57BL6J_1934835	Ube2n	NCBI_Gene:93765,ENSEMBL:ENSMUSG00000074781	MGI:1934835	protein coding gene	ubiquitin-conjugating enzyme E2N
10	gene	95.54701	95.56418	negative	MGI_C57BL6J_1918457	Nudt4	NCBI_Gene:71207,ENSEMBL:ENSMUSG00000020029	MGI:1918457	protein coding gene	nudix (nucleoside diphosphate linked moiety X)-type motif 4
10	gene	95.55923	95.55932	negative	MGI_C57BL6J_4834226	Mir3058	miRBase:MI0004418,NCBI_Gene:100526463,ENSEMBL:ENSMUSG00000092867	MGI:4834226	miRNA gene	microRNA 3058
10	gene	95.60379	95.60412	positive	MGI_C57BL6J_5453553	Gm23776	ENSEMBL:ENSMUSG00000089618	MGI:5453553	unclassified non-coding RNA gene	predicted gene, 23776
10	gene	95.63024	95.63224	negative	MGI_C57BL6J_5592495	Gm33336	NCBI_Gene:102636201,ENSEMBL:ENSMUSG00000112439	MGI:5592495	lncRNA gene	predicted gene, 33336
10	gene	95.63448	95.63643	positive	MGI_C57BL6J_6096760	Gm47667	ENSEMBL:ENSMUSG00000112538	MGI:6096760	lncRNA gene	predicted gene, 47667
10	pseudogene	95.67269	95.67351	negative	MGI_C57BL6J_3646302	Anapc15-ps	NCBI_Gene:628119,ENSEMBL:ENSMUSG00000074780	MGI:3646302	pseudogene	anaphase prompoting complex C subunit 15, pseudogene
10	gene	95.68081	95.68112	positive	MGI_C57BL6J_1916857	2310011C19Rik	NA	NA	unclassified gene	RIKEN cDNA 2310011C19 gene
10	pseudogene	95.70305	95.70346	negative	MGI_C57BL6J_6096763	Gm47669	ENSEMBL:ENSMUSG00000112025	MGI:6096763	pseudogene	predicted gene, 47669
10	gene	95.71400	95.71751	negative	MGI_C57BL6J_6096765	Gm47671	ENSEMBL:ENSMUSG00000112519	MGI:6096765	lncRNA gene	predicted gene, 47671
10	gene	95.71913	95.72250	negative	MGI_C57BL6J_1915779	1110019B22Rik	ENSEMBL:ENSMUSG00000112289	MGI:1915779	lncRNA gene	RIKEN cDNA 1110019B22 gene
10	gene	95.73018	95.73936	positive	MGI_C57BL6J_6096827	Gm47708	ENSEMBL:ENSMUSG00000112188	MGI:6096827	lncRNA gene	predicted gene, 47708
10	gene	95.74608	95.79724	positive	MGI_C57BL6J_3041208	4732465J04Rik	NCBI_Gene:414105,ENSEMBL:ENSMUSG00000101517	MGI:3041208	lncRNA gene	RIKEN cDNA 4732465J04 gene
10	gene	95.81134	95.81789	negative	MGI_C57BL6J_6096845	Gm47718	ENSEMBL:ENSMUSG00000112771	MGI:6096845	lncRNA gene	predicted gene, 47718
10	gene	95.81732	95.89681	positive	MGI_C57BL6J_5592536	Gm33377	NCBI_Gene:102636263	MGI:5592536	lncRNA gene	predicted gene, 33377
10	gene	95.81757	95.84912	positive	MGI_C57BL6J_6096847	Gm47719	ENSEMBL:ENSMUSG00000112599	MGI:6096847	lncRNA gene	predicted gene, 47719
10	gene	95.82397	95.84316	negative	MGI_C57BL6J_5592702	Gm33543	NCBI_Gene:102636491,ENSEMBL:ENSMUSG00000110353	MGI:5592702	lncRNA gene	predicted gene, 33543
10	pseudogene	95.87048	95.87080	negative	MGI_C57BL6J_6096855	Gm47724	ENSEMBL:ENSMUSG00000111992	MGI:6096855	pseudogene	predicted gene, 47724
10	gene	95.89344	95.89726	positive	MGI_C57BL6J_6096856	Gm47725	ENSEMBL:ENSMUSG00000112400	MGI:6096856	lncRNA gene	predicted gene, 47725
10	gene	95.89860	95.89874	positive	MGI_C57BL6J_5454210	Gm24433	ENSEMBL:ENSMUSG00000077268	MGI:5454210	snoRNA gene	predicted gene, 24433
10	gene	95.94065	96.04552	positive	MGI_C57BL6J_2442192	Eea1	NCBI_Gene:216238,ENSEMBL:ENSMUSG00000036499	MGI:2442192	protein coding gene	early endosome antigen 1
10	pseudogene	96.04763	96.09601	negative	MGI_C57BL6J_6270484	Gm49817	ENSEMBL:ENSMUSG00000117008	MGI:6270484	pseudogene	predicted gene, 49817
10	pseudogene	96.12798	96.12974	negative	MGI_C57BL6J_6097923	Gm48425	ENSEMBL:ENSMUSG00000112316	MGI:6097923	pseudogene	predicted gene, 48425
10	gene	96.13655	96.13704	positive	MGI_C57BL6J_3646788	Gm5426	NCBI_Gene:432491,ENSEMBL:ENSMUSG00000096486	MGI:3646788	protein coding gene	predicted pseudogene 5426
10	gene	96.16433	96.16443	positive	MGI_C57BL6J_5452690	Gm22913	ENSEMBL:ENSMUSG00000094523	MGI:5452690	miRNA gene	predicted gene, 22913
10	gene	96.18092	96.18269	positive	MGI_C57BL6J_5623631	Gm40746	NCBI_Gene:105245268	MGI:5623631	lncRNA gene	predicted gene, 40746
10	gene	96.22602	96.24887	positive	MGI_C57BL6J_1922131	4930459C07Rik	NCBI_Gene:74881,ENSEMBL:ENSMUSG00000112762	MGI:1922131	lncRNA gene	RIKEN cDNA 4930459C07 gene
10	gene	96.22633	96.25891	negative	MGI_C57BL6J_5623632	Gm40747	NCBI_Gene:105245269	MGI:5623632	lncRNA gene	predicted gene, 40747
10	gene	96.30550	96.30873	negative	MGI_C57BL6J_5623633	Gm40748	NCBI_Gene:105245270	MGI:5623633	lncRNA gene	predicted gene, 40748
10	gene	96.30908	96.36253	positive	MGI_C57BL6J_5592941	Gm33782	NCBI_Gene:102636813,ENSEMBL:ENSMUSG00000112290	MGI:5592941	lncRNA gene	predicted gene, 33782
10	gene	96.30934	96.32072	positive	MGI_C57BL6J_6097926	Gm48427	ENSEMBL:ENSMUSG00000112234	MGI:6097926	lncRNA gene	predicted gene, 48427
10	gene	96.33609	96.34582	negative	MGI_C57BL6J_6097928	Gm48428	ENSEMBL:ENSMUSG00000112749	MGI:6097928	lncRNA gene	predicted gene, 48428
10	pseudogene	96.40873	96.40913	negative	MGI_C57BL6J_5012276	Gm20091	NCBI_Gene:100504157,ENSEMBL:ENSMUSG00000094249	MGI:5012276	pseudogene	predicted gene, 20091
10	pseudogene	96.47647	96.47753	positive	MGI_C57BL6J_3643183	Gm8601	NCBI_Gene:667380,ENSEMBL:ENSMUSG00000097939	MGI:3643183	pseudogene	predicted gene 8601
10	gene	96.49572	96.52398	negative	MGI_C57BL6J_6098035	Gm48505	ENSEMBL:ENSMUSG00000112264	MGI:6098035	lncRNA gene	predicted gene, 48505
10	gene	96.51916	96.59874	negative	MGI_C57BL6J_5593002	Gm33843	NCBI_Gene:102636895,ENSEMBL:ENSMUSG00000112354	MGI:5593002	lncRNA gene	predicted gene, 33843
10	gene	96.61700	96.62281	positive	MGI_C57BL6J_88215	Btg1	NCBI_Gene:12226,ENSEMBL:ENSMUSG00000036478	MGI:88215	protein coding gene	B cell translocation gene 1, anti-proliferative
10	pseudogene	96.71181	96.71209	positive	MGI_C57BL6J_6098038	Gm48507	ENSEMBL:ENSMUSG00000112362	MGI:6098038	pseudogene	predicted gene, 48507
10	gene	96.71576	96.72792	positive	MGI_C57BL6J_5593056	Gm33897	NCBI_Gene:102636973	MGI:5593056	lncRNA gene	predicted gene, 33897
10	pseudogene	96.76848	96.76983	negative	MGI_C57BL6J_3647629	Gm6859	NCBI_Gene:628256,ENSEMBL:ENSMUSG00000112588	MGI:3647629	pseudogene	predicted gene 6859
10	pseudogene	96.79839	96.79872	positive	MGI_C57BL6J_6098041	Gm48509	ENSEMBL:ENSMUSG00000112293	MGI:6098041	pseudogene	predicted gene, 48509
10	gene	96.80104	96.88471	positive	MGI_C57BL6J_6098057	Gm48521	ENSEMBL:ENSMUSG00000111912	MGI:6098057	lncRNA gene	predicted gene, 48521
10	gene	96.85558	96.85567	negative	MGI_C57BL6J_5454364	Gm24587	ENSEMBL:ENSMUSG00000080347	MGI:5454364	miRNA gene	predicted gene, 24587
10	gene	96.90133	96.92019	positive	MGI_C57BL6J_5825877	Gm46240	NCBI_Gene:108167830	MGI:5825877	protein coding gene	predicted gene, 46240
10	gene	96.90316	96.95887	negative	MGI_C57BL6J_5593140	Gm33981	NCBI_Gene:102637079,ENSEMBL:ENSMUSG00000112488	MGI:5593140	lncRNA gene	predicted gene, 33981
10	gene	97.03577	97.06106	positive	MGI_C57BL6J_1922551	4930556N09Rik	NCBI_Gene:75301,ENSEMBL:ENSMUSG00000111924	MGI:1922551	lncRNA gene	RIKEN cDNA 4930556N09 gene
10	gene	97.05774	97.05825	positive	MGI_C57BL6J_1920555	1700038C09Rik	NA	NA	unclassified gene	RIKEN cDNA 1700038C09 gene
10	pseudogene	97.10549	97.10658	negative	MGI_C57BL6J_6098109	Gm48555	ENSEMBL:ENSMUSG00000112631	MGI:6098109	pseudogene	predicted gene, 48555
10	pseudogene	97.19920	97.20045	negative	MGI_C57BL6J_3648168	Gm8613	NCBI_Gene:667407,ENSEMBL:ENSMUSG00000112892	MGI:3648168	pseudogene	predicted gene 8613
10	gene	97.20739	97.23576	negative	MGI_C57BL6J_5593203	Gm34044	NCBI_Gene:102637160	MGI:5593203	lncRNA gene	predicted gene, 34044
10	pseudogene	97.24191	97.24321	positive	MGI_C57BL6J_5010700	Gm18515	NCBI_Gene:100417299,ENSEMBL:ENSMUSG00000111981	MGI:5010700	pseudogene	predicted gene, 18515
10	gene	97.38876	97.42858	negative	MGI_C57BL6J_5593273	Gm34114	NCBI_Gene:102637248	MGI:5593273	lncRNA gene	predicted gene, 34114
10	gene	97.42348	97.42356	positive	MGI_C57BL6J_4950405	Mir3966	miRBase:MI0016975,NCBI_Gene:100628616,ENSEMBL:ENSMUSG00000105557	MGI:4950405	miRNA gene	microRNA 3966
10	gene	97.47950	97.51816	positive	MGI_C57BL6J_94872	Dcn	NCBI_Gene:13179,ENSEMBL:ENSMUSG00000019929	MGI:94872	protein coding gene	decorin
10	gene	97.56513	97.57270	positive	MGI_C57BL6J_109347	Lum	NCBI_Gene:17022,ENSEMBL:ENSMUSG00000036446	MGI:109347	protein coding gene	lumican
10	gene	97.59098	97.59693	negative	MGI_C57BL6J_1922275	4930473O22Rik	NCBI_Gene:75025,ENSEMBL:ENSMUSG00000112484	MGI:1922275	lncRNA gene	RIKEN cDNA 4930473O22 gene
10	gene	97.60688	97.61369	positive	MGI_C57BL6J_1202398	Kera	NCBI_Gene:16545,ENSEMBL:ENSMUSG00000019932	MGI:1202398	protein coding gene	keratocan
10	gene	97.62017	97.62326	negative	MGI_C57BL6J_5623634	Gm40749	NCBI_Gene:105245271	MGI:5623634	lncRNA gene	predicted gene, 40749
10	gene	97.64407	97.68245	positive	MGI_C57BL6J_107942	Epyc	NCBI_Gene:13516,ENSEMBL:ENSMUSG00000019936	MGI:107942	protein coding gene	epiphycan
10	gene	97.68141	97.96709	negative	MGI_C57BL6J_3642925	Gm10754	NCBI_Gene:100038699,ENSEMBL:ENSMUSG00000074776	MGI:3642925	lncRNA gene	predicted gene 10754
10	gene	97.69306	97.69493	positive	MGI_C57BL6J_1913966	Ccer1	NCBI_Gene:66716,ENSEMBL:ENSMUSG00000047025	MGI:1913966	protein coding gene	coiled-coil glutamate-rich protein 1
10	gene	97.71477	97.75370	positive	MGI_C57BL6J_1925377	4930525C09Rik	NCBI_Gene:78127,ENSEMBL:ENSMUSG00000112497	MGI:1925377	lncRNA gene	RIKEN cDNA 4930525C09 gene
10	gene	97.72487	97.72675	negative	MGI_C57BL6J_3641867	C030005K15Rik	ENSEMBL:ENSMUSG00000079183	MGI:3641867	protein coding gene	RIKEN cDNA C030005K15 gene
10	gene	97.74476	97.74488	negative	MGI_C57BL6J_5455435	Gm25658	ENSEMBL:ENSMUSG00000089097	MGI:5455435	snoRNA gene	predicted gene, 25658
10	gene	98.29993	98.35187	negative	MGI_C57BL6J_3647678	Gm8633	NCBI_Gene:667438,ENSEMBL:ENSMUSG00000112896	MGI:3647678	lncRNA gene	predicted gene 8633
10	pseudogene	98.30102	98.30125	positive	MGI_C57BL6J_6098315	Gm48687	ENSEMBL:ENSMUSG00000112457	MGI:6098315	pseudogene	predicted gene, 48687
10	gene	98.48651	98.48687	negative	MGI_C57BL6J_5610859	Gm37631	ENSEMBL:ENSMUSG00000102310	MGI:5610859	unclassified gene	predicted gene, 37631
10	gene	98.53748	98.56984	positive	MGI_C57BL6J_5593456	Gm34297	NCBI_Gene:102637506,ENSEMBL:ENSMUSG00000112874	MGI:5593456	lncRNA gene	predicted gene, 34297
10	gene	98.65380	98.69971	negative	MGI_C57BL6J_3646787	Gm5427	ENSEMBL:ENSMUSG00000112647	MGI:3646787	lncRNA gene	predicted gene 5427
10	gene	98.80714	98.80947	positive	MGI_C57BL6J_5623635	Gm40750	NCBI_Gene:105245273	MGI:5623635	lncRNA gene	predicted gene, 40750
10	gene	98.83401	98.88274	negative	MGI_C57BL6J_5593505	Gm34346	NCBI_Gene:102637570	MGI:5593505	lncRNA gene	predicted gene, 34346
10	gene	98.91436	99.02614	positive	MGI_C57BL6J_104653	Atp2b1	NCBI_Gene:67972,ENSEMBL:ENSMUSG00000019943	MGI:104653	protein coding gene	ATPase, Ca++ transporting, plasma membrane 1
10	gene	99.03947	99.04144	positive	MGI_C57BL6J_6098443	Gm48761	ENSEMBL:ENSMUSG00000112660	MGI:6098443	unclassified gene	predicted gene, 48761
10	gene	99.10579	99.10808	negative	MGI_C57BL6J_6098457	Gm48768	ENSEMBL:ENSMUSG00000112346	MGI:6098457	lncRNA gene	predicted gene, 48768
10	gene	99.10704	99.19807	positive	MGI_C57BL6J_1918511	Poc1b	NCBI_Gene:382406,ENSEMBL:ENSMUSG00000019952	MGI:1918511	protein coding gene	POC1 centriolar protein B
10	gene	99.10814	99.11325	positive	MGI_C57BL6J_894692	Galnt4	NCBI_Gene:14426,ENSEMBL:ENSMUSG00000090035	MGI:894692	protein coding gene	polypeptide N-acetylgalactosaminyltransferase 4
10	gene	99.12517	99.12632	negative	MGI_C57BL6J_104524	Phxr2	ENSEMBL:ENSMUSG00000055108	MGI:104524	protein coding gene	per-hexamer repeat gene 2
10	gene	99.17918	99.18461	negative	MGI_C57BL6J_3801746	Gm16239	ENSEMBL:ENSMUSG00000089994	MGI:3801746	lncRNA gene	predicted gene 16239
10	gene	99.21644	99.23209	negative	MGI_C57BL6J_5593733	Gm34574	NCBI_Gene:102637874,ENSEMBL:ENSMUSG00000112805	MGI:5593733	lncRNA gene	predicted gene, 34574
10	gene	99.23279	99.23762	negative	MGI_C57BL6J_6098641	Gm48884	ENSEMBL:ENSMUSG00000112902	MGI:6098641	lncRNA gene	predicted gene, 48884
10	gene	99.23307	99.24306	positive	MGI_C57BL6J_5593936	Gm34777	NCBI_Gene:102638142,ENSEMBL:ENSMUSG00000111923	MGI:5593936	lncRNA gene	predicted gene, 34777
10	gene	99.26323	99.26749	positive	MGI_C57BL6J_1914853	Dusp6	NCBI_Gene:67603,ENSEMBL:ENSMUSG00000019960	MGI:1914853	protein coding gene	dual specificity phosphatase 6
10	gene	99.26686	99.27091	negative	MGI_C57BL6J_5594080	Gm34921	NCBI_Gene:102638331,ENSEMBL:ENSMUSG00000112384	MGI:5594080	lncRNA gene	predicted gene, 34921
10	gene	99.26790	99.27908	positive	MGI_C57BL6J_6097430	Gm48089	ENSEMBL:ENSMUSG00000112544	MGI:6097430	lncRNA gene	predicted gene, 48089
10	gene	99.29889	99.42305	positive	MGI_C57BL6J_2445145	B530045E10Rik	ENSEMBL:ENSMUSG00000044633	MGI:2445145	lncRNA gene	RIKEN cDNA B530045E10 gene
10	pseudogene	99.44384	99.44703	positive	MGI_C57BL6J_95633	Gad1-ps	NCBI_Gene:382407,ENSEMBL:ENSMUSG00000090665	MGI:95633	pseudogene	glutamate decarboxylase 1, pseudogene
10	gene	99.45022	99.46204	negative	MGI_C57BL6J_5594194	Gm35035	NCBI_Gene:102638482,ENSEMBL:ENSMUSG00000112082	MGI:5594194	lncRNA gene	predicted gene, 35035
10	gene	99.45689	99.49059	positive	MGI_C57BL6J_5594142	Gm34983	NCBI_Gene:102638407,ENSEMBL:ENSMUSG00000112265	MGI:5594142	lncRNA gene	predicted gene, 34983
10	pseudogene	99.53762	99.53807	negative	MGI_C57BL6J_6097425	Gm48085	ENSEMBL:ENSMUSG00000112180	MGI:6097425	pseudogene	predicted gene, 48085
10	gene	99.60917	99.65813	positive	MGI_C57BL6J_5012295	Gm20110	NCBI_Gene:100504202,ENSEMBL:ENSMUSG00000111962	MGI:5012295	lncRNA gene	predicted gene, 20110
10	pseudogene	99.63872	99.64192	negative	MGI_C57BL6J_5010594	Gm18409	NCBI_Gene:100417125,ENSEMBL:ENSMUSG00000112503	MGI:5010594	pseudogene	predicted gene, 18409
10	gene	99.66077	99.69201	positive	MGI_C57BL6J_5594260	Gm35101	NCBI_Gene:102638567,ENSEMBL:ENSMUSG00000112810	MGI:5594260	lncRNA gene	predicted gene, 35101
10	gene	99.71914	99.89116	positive	MGI_C57BL6J_6096613	Gm47578	ENSEMBL:ENSMUSG00000113032	MGI:6096613	lncRNA gene	predicted gene, 47578
10	gene	99.75771	99.75966	negative	MGI_C57BL6J_1919082	Csl	NCBI_Gene:71832,ENSEMBL:ENSMUSG00000046934	MGI:1919082	protein coding gene	citrate synthase like
10	gene	99.75951	99.83056	positive	MGI_C57BL6J_5594365	Gm35206	NCBI_Gene:102638712,ENSEMBL:ENSMUSG00000112304	MGI:5594365	lncRNA gene	predicted gene, 35206
10	pseudogene	99.86537	99.86602	negative	MGI_C57BL6J_6096615	Gm47579	ENSEMBL:ENSMUSG00000112463	MGI:6096615	pseudogene	predicted gene, 47579
10	gene	99.90300	99.92554	positive	MGI_C57BL6J_5594596	Gm35437	NCBI_Gene:102639018	MGI:5594596	lncRNA gene	predicted gene, 35437
10	pseudogene	99.98862	99.98979	positive	MGI_C57BL6J_5010055	Gm17870	NCBI_Gene:100416012,ENSEMBL:ENSMUSG00000112299	MGI:5010055	pseudogene	predicted gene, 17870
10	gene	100.01563	100.10042	positive	MGI_C57BL6J_96974	Kitl	NCBI_Gene:17311,ENSEMBL:ENSMUSG00000019966	MGI:96974	protein coding gene	kit ligand
10	gene	100.12987	100.14414	negative	MGI_C57BL6J_5594692	Gm35533	NCBI_Gene:102639153,ENSEMBL:ENSMUSG00000112831	MGI:5594692	lncRNA gene	predicted gene, 35533
10	gene	100.13950	100.13961	positive	MGI_C57BL6J_5452695	Gm22918	ENSEMBL:ENSMUSG00000096586	MGI:5452695	miRNA gene	predicted gene, 22918
10	gene	100.14425	100.14436	positive	MGI_C57BL6J_5455064	Gm25287	ENSEMBL:ENSMUSG00000095539	MGI:5455064	miRNA gene	predicted gene, 25287
10	gene	100.20387	100.20434	negative	MGI_C57BL6J_6096695	Gm47627	ENSEMBL:ENSMUSG00000112633	MGI:6096695	unclassified gene	predicted gene, 47627
10	pseudogene	100.29794	100.29865	negative	MGI_C57BL6J_3646823	Gm8689	NCBI_Gene:667532,ENSEMBL:ENSMUSG00000112245	MGI:3646823	pseudogene	predicted gene 8689
10	pseudogene	100.30650	100.30719	negative	MGI_C57BL6J_3779885	Gm9476	NCBI_Gene:670007,ENSEMBL:ENSMUSG00000112069	MGI:3779885	pseudogene	predicted gene 9476
10	pseudogene	100.31702	100.32027	negative	MGI_C57BL6J_6096703	Gm47632	ENSEMBL:ENSMUSG00000112522	MGI:6096703	pseudogene	predicted gene, 47632
10	pseudogene	100.32031	100.32143	negative	MGI_C57BL6J_6096697	Gm47628	ENSEMBL:ENSMUSG00000112122	MGI:6096697	pseudogene	predicted gene, 47628
10	pseudogene	100.32110	100.32137	positive	MGI_C57BL6J_6096700	Gm47630	ENSEMBL:ENSMUSG00000112178	MGI:6096700	pseudogene	predicted gene, 47630
10	pseudogene	100.32546	100.32629	positive	MGI_C57BL6J_3647354	Gm4898	NCBI_Gene:235966,ENSEMBL:ENSMUSG00000112737	MGI:3647354	pseudogene	predicted gene 4898
10	pseudogene	100.33054	100.33141	positive	MGI_C57BL6J_3646142	Gm8701	NCBI_Gene:667556,ENSEMBL:ENSMUSG00000112408	MGI:3646142	pseudogene	predicted gene 8701
10	gene	100.33568	100.33659	positive	MGI_C57BL6J_3782481	Gm4301	NCBI_Gene:100043224,ENSEMBL:ENSMUSG00000094314	MGI:3782481	protein coding gene	predicted gene 4301
10	gene	100.34084	100.34176	positive	MGI_C57BL6J_3782482	Gm4302	NCBI_Gene:100043227,ENSEMBL:ENSMUSG00000091101	MGI:3782482	protein coding gene	predicted gene 4302
10	gene	100.34597	100.34688	positive	MGI_C57BL6J_3782483	Gm4303	NCBI_Gene:100043231,ENSEMBL:ENSMUSG00000112931	MGI:3782483	protein coding gene	predicted gene 4303
10	gene	100.35109	100.35200	positive	MGI_C57BL6J_3782485	Gm4305	NCBI_Gene:100043235,ENSEMBL:ENSMUSG00000112856	MGI:3782485	protein coding gene	predicted gene 4305
10	pseudogene	100.35623	100.35712	positive	MGI_C57BL6J_3644351	Gm8711	NCBI_Gene:667580,ENSEMBL:ENSMUSG00000091552	MGI:3644351	pseudogene	predicted gene 8711
10	gene	100.36134	100.36225	positive	MGI_C57BL6J_3782487	Gm4307	NCBI_Gene:100043239,ENSEMBL:ENSMUSG00000096744	MGI:3782487	protein coding gene	predicted gene 4307
10	pseudogene	100.36650	100.36741	positive	MGI_C57BL6J_3782489	Gm4308	NCBI_Gene:100043242,ENSEMBL:ENSMUSG00000095673	MGI:3782489	pseudogene	predicted gene 4308
10	pseudogene	100.37125	100.37213	negative	MGI_C57BL6J_3782491	Gm4310	NCBI_Gene:100043244,ENSEMBL:ENSMUSG00000112480	MGI:3782491	pseudogene	predicted gene 4310
10	gene	100.37286	100.38383	negative	MGI_C57BL6J_6096701	Gm47631	ENSEMBL:ENSMUSG00000112485	MGI:6096701	lncRNA gene	predicted gene, 47631
10	pseudogene	100.37646	100.37733	negative	MGI_C57BL6J_3647757	Gm8723	NCBI_Gene:667607,ENSEMBL:ENSMUSG00000112777	MGI:3647757	pseudogene	predicted gene 8723
10	gene	100.38165	100.38256	negative	MGI_C57BL6J_3782493	Gm4312	NCBI_Gene:100043247,ENSEMBL:ENSMUSG00000096640	MGI:3782493	protein coding gene	predicted gene 4312
10	pseudogene	100.39629	100.39707	negative	MGI_C57BL6J_3643164	Gm4781	NCBI_Gene:213051,ENSEMBL:ENSMUSG00000112453	MGI:3643164	pseudogene	predicted gene 4781
10	gene	100.43294	100.43357	negative	MGI_C57BL6J_6096768	Gm47673	ENSEMBL:ENSMUSG00000112580	MGI:6096768	unclassified gene	predicted gene, 47673
10	gene	100.44390	100.48735	negative	MGI_C57BL6J_3036255	Tmtc3	NCBI_Gene:237500,ENSEMBL:ENSMUSG00000036676	MGI:3036255	protein coding gene	transmembrane and tetratricopeptide repeat containing 3
10	gene	100.48755	100.57484	positive	MGI_C57BL6J_2384917	Cep290	NCBI_Gene:216274,ENSEMBL:ENSMUSG00000019971	MGI:2384917	protein coding gene	centrosomal protein 290
10	gene	100.57227	100.59042	negative	MGI_C57BL6J_1921197	4930430F08Rik	NCBI_Gene:68281,ENSEMBL:ENSMUSG00000046567	MGI:1921197	protein coding gene	RIKEN cDNA 4930430F08 gene
10	gene	100.57743	100.58371	positive	MGI_C57BL6J_6097228	Gm47956	ENSEMBL:ENSMUSG00000112000	MGI:6097228	lncRNA gene	predicted gene, 47956
10	gene	100.59048	100.61840	positive	MGI_C57BL6J_1913855	1700017N19Rik	NCBI_Gene:66605,ENSEMBL:ENSMUSG00000056912	MGI:1913855	protein coding gene	RIKEN cDNA 1700017N19 gene
10	pseudogene	100.65163	100.65194	positive	MGI_C57BL6J_6096210	Gm47325	ENSEMBL:ENSMUSG00000112328	MGI:6096210	pseudogene	predicted gene, 47325
10	gene	100.70753	100.74164	negative	MGI_C57BL6J_5594881	Gm35722	NCBI_Gene:102639396,ENSEMBL:ENSMUSG00000112104	MGI:5594881	lncRNA gene	predicted gene, 35722
10	pseudogene	101.27162	101.27262	positive	MGI_C57BL6J_5011418	Gm19233	NCBI_Gene:100418475,ENSEMBL:ENSMUSG00000111906	MGI:5011418	pseudogene	predicted gene, 19233
10	gene	101.54418	101.54431	positive	MGI_C57BL6J_5456055	Gm26278	ENSEMBL:ENSMUSG00000087723	MGI:5456055	snoRNA gene	predicted gene, 26278
10	gene	101.68149	102.39185	positive	MGI_C57BL6J_1914819	Mgat4c	NCBI_Gene:67569,ENSEMBL:ENSMUSG00000019888	MGI:1914819	protein coding gene	MGAT4 family, member C
10	gene	101.73077	101.73156	positive	MGI_C57BL6J_6095728	Gm47032	ENSEMBL:ENSMUSG00000111931	MGI:6095728	unclassified gene	predicted gene, 47032
10	gene	101.77269	101.77277	positive	MGI_C57BL6J_4834225	Mir3059	miRBase:MI0004412,NCBI_Gene:100526516,ENSEMBL:ENSMUSG00000092952	MGI:4834225	miRNA gene	microRNA 3059
10	gene	102.11444	102.11646	positive	MGI_C57BL6J_5608885	B230210A14Rik	NA	NA	unclassified gene	Riken cDNA B230210A14 gene
10	gene	102.15891	102.27354	positive	MGI_C57BL6J_1921048	4930402I19Rik	NA	NA	unclassified gene	RIKEN cDNA 4930402I19 gene
10	gene	102.27191	102.27441	positive	MGI_C57BL6J_2444255	D930019F10Rik	NA	NA	unclassified gene	RIKEN cDNA D930019F10 gene
10	gene	102.31961	102.32189	positive	MGI_C57BL6J_6095726	Gm47031	ENSEMBL:ENSMUSG00000112342	MGI:6095726	lncRNA gene	predicted gene, 47031
10	gene	102.41588	102.41801	positive	MGI_C57BL6J_6095730	Gm47033	ENSEMBL:ENSMUSG00000111990	MGI:6095730	lncRNA gene	predicted gene, 47033
10	gene	102.43191	102.43234	negative	MGI_C57BL6J_6095715	Gm47025	ENSEMBL:ENSMUSG00000112012	MGI:6095715	unclassified gene	predicted gene, 47025
10	gene	102.43527	102.43554	positive	MGI_C57BL6J_6095836	Gm47101	ENSEMBL:ENSMUSG00000112073	MGI:6095836	lncRNA gene	predicted gene, 47101
10	pseudogene	102.46020	102.46114	positive	MGI_C57BL6J_5504103	Gm26988	ENSEMBL:ENSMUSG00000098139	MGI:5504103	pseudogene	predicted gene, 26988
10	gene	102.48176	102.49049	negative	MGI_C57BL6J_1328351	Nts	NCBI_Gene:67405,ENSEMBL:ENSMUSG00000019890	MGI:1328351	protein coding gene	neurotensin
10	gene	102.51222	102.54974	positive	MGI_C57BL6J_2384307	Rassf9	NCBI_Gene:237504,ENSEMBL:ENSMUSG00000044921	MGI:2384307	protein coding gene	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
10	pseudogene	102.68307	102.68331	negative	MGI_C57BL6J_6095904	Gm47142	ENSEMBL:ENSMUSG00000112221	MGI:6095904	pseudogene	predicted gene, 47142
10	gene	102.68327	102.69457	positive	MGI_C57BL6J_6095905	Gm47143	ENSEMBL:ENSMUSG00000112845	MGI:6095905	lncRNA gene	predicted gene, 47143
10	pseudogene	102.76598	102.83866	positive	MGI_C57BL6J_3647142	Gm5175	NCBI_Gene:382413,ENSEMBL:ENSMUSG00000112046	MGI:3647142	pseudogene	predicted gene 5175
10	gene	102.99871	103.03021	negative	MGI_C57BL6J_104621	Alx1	NCBI_Gene:216285,ENSEMBL:ENSMUSG00000036602	MGI:104621	protein coding gene	ALX homeobox 1
10	gene	103.02899	103.03253	positive	MGI_C57BL6J_5593457	Gm34298	NCBI_Gene:102637507	MGI:5593457	protein coding gene	predicted gene, 34298
10	gene	103.02948	103.03034	negative	MGI_C57BL6J_4937855	Gm17028	ENSEMBL:ENSMUSG00000090638	MGI:4937855	lncRNA gene	predicted gene 17028
10	gene	103.04438	103.23633	negative	MGI_C57BL6J_1922228	Lrriq1	NCBI_Gene:74978,ENSEMBL:ENSMUSG00000019892	MGI:1922228	protein coding gene	leucine-rich repeats and IQ motif containing 1
10	gene	103.12124	103.12137	positive	MGI_C57BL6J_5455153	Gm25376	ENSEMBL:ENSMUSG00000077528	MGI:5455153	snoRNA gene	predicted gene, 25376
10	gene	103.20775	103.21344	negative	MGI_C57BL6J_6095941	Gm47164	ENSEMBL:ENSMUSG00000112622	MGI:6095941	unclassified gene	predicted gene, 47164
10	gene	103.36719	103.36937	negative	MGI_C57BL6J_2442852	6430590A10Rik	NCBI_Gene:100043277	MGI:2442852	lncRNA gene	RIKEN cDNA 6430590A10 gene
10	gene	103.36746	103.41938	positive	MGI_C57BL6J_2143484	Slc6a15	NCBI_Gene:103098,ENSEMBL:ENSMUSG00000019894	MGI:2143484	protein coding gene	solute carrier family 6 (neurotransmitter transporter), member 15
10	pseudogene	103.42989	103.43078	positive	MGI_C57BL6J_3643663	Gm8768	NCBI_Gene:667697,ENSEMBL:ENSMUSG00000112923	MGI:3643663	pseudogene	predicted gene 8768
10	gene	103.50736	103.56656	positive	MGI_C57BL6J_6096034	Gm47223	ENSEMBL:ENSMUSG00000112636	MGI:6096034	lncRNA gene	predicted gene, 47223
10	gene	103.51293	103.57169	positive	MGI_C57BL6J_6096031	Gm47221	ENSEMBL:ENSMUSG00000112319	MGI:6096031	lncRNA gene	predicted gene, 47221
10	pseudogene	103.56765	103.56805	positive	MGI_C57BL6J_6096030	Gm47220	ENSEMBL:ENSMUSG00000112644	MGI:6096030	pseudogene	predicted gene, 47220
10	pseudogene	103.56921	103.56940	negative	MGI_C57BL6J_6096033	Gm47222	ENSEMBL:ENSMUSG00000112839	MGI:6096033	pseudogene	predicted gene, 47222
10	pseudogene	103.58140	103.58239	negative	MGI_C57BL6J_5504038	Gm26923	ENSEMBL:ENSMUSG00000098173	MGI:5504038	pseudogene	predicted gene, 26923
10	gene	103.85627	103.85833	negative	MGI_C57BL6J_6096036	Gm47224	ENSEMBL:ENSMUSG00000112554	MGI:6096036	lncRNA gene	predicted gene, 47224
10	pseudogene	103.89354	103.89381	positive	MGI_C57BL6J_6096038	Gm47225	ENSEMBL:ENSMUSG00000112570	MGI:6096038	pseudogene	predicted gene, 47225
10	gene	103.95954	103.95965	positive	MGI_C57BL6J_5454920	Gm25143	ENSEMBL:ENSMUSG00000064630	MGI:5454920	snRNA gene	predicted gene, 25143
10	gene	103.98699	103.98791	positive	MGI_C57BL6J_6096039	Gm47226	ENSEMBL:ENSMUSG00000112281	MGI:6096039	lncRNA gene	predicted gene, 47226
10	pseudogene	104.08222	104.08234	positive	MGI_C57BL6J_6096041	Gm47227	ENSEMBL:ENSMUSG00000112403	MGI:6096041	pseudogene	predicted gene, 47227
10	pseudogene	104.09632	104.09676	negative	MGI_C57BL6J_6096042	Gm47228	ENSEMBL:ENSMUSG00000112382	MGI:6096042	pseudogene	predicted gene, 47228
10	gene	104.14299	104.15367	positive	MGI_C57BL6J_5434648	Gm21293	NCBI_Gene:100861880,ENSEMBL:ENSMUSG00000091779	MGI:5434648	protein coding gene	predicted gene, 21293
10	gene	104.15150	104.15396	positive	MGI_C57BL6J_3643573	Gm6763	NCBI_Gene:627488,ENSEMBL:ENSMUSG00000097427	MGI:3643573	protein coding gene	predicted gene 6763
10	gene	104.16001	104.16247	positive	MGI_C57BL6J_3643666	Gm8764	NCBI_Gene:667692,ENSEMBL:ENSMUSG00000097878	MGI:3643666	protein coding gene	predicted gene 8764
10	gene	104.16851	104.17098	positive	MGI_C57BL6J_5434659	Gm21304	NCBI_Gene:100861891,ENSEMBL:ENSMUSG00000097550	MGI:5434659	protein coding gene	predicted gene, 21304
10	gene	104.17702	104.17949	positive	MGI_C57BL6J_5434667	Gm21312	NCBI_Gene:100861901,ENSEMBL:ENSMUSG00000094144	MGI:5434667	protein coding gene	predicted gene, 21312
10	gene	104.18553	104.18800	positive	MGI_C57BL6J_5434121	Gm20765	NCBI_Gene:637578,ENSEMBL:ENSMUSG00000095022	MGI:5434121	protein coding gene	predicted gene, 20765
10	gene	104.19404	104.19652	positive	MGI_C57BL6J_3782524	Gm4340	NCBI_Gene:100043292,ENSEMBL:ENSMUSG00000090854	MGI:3782524	protein coding gene	predicted gene 4340
10	gene	104.22484	104.22490	negative	MGI_C57BL6J_5452116	Gm22339	ENSEMBL:ENSMUSG00000088343	MGI:5452116	snRNA gene	predicted gene, 22339
10	gene	104.28727	104.28738	positive	MGI_C57BL6J_5531149	Mir6411	miRBase:MI0021948,NCBI_Gene:102465222,ENSEMBL:ENSMUSG00000099264	MGI:5531149	miRNA gene	microRNA 6411
10	gene	104.47105	104.47121	negative	MGI_C57BL6J_5452722	Gm22945	ENSEMBL:ENSMUSG00000089182	MGI:5452722	snRNA gene	predicted gene, 22945
10	gene	104.86520	104.86531	negative	MGI_C57BL6J_5455299	Gm25522	ENSEMBL:ENSMUSG00000089019	MGI:5455299	snRNA gene	predicted gene, 25522
10	pseudogene	104.87421	104.87448	negative	MGI_C57BL6J_6097563	Gm48184	ENSEMBL:ENSMUSG00000112044	MGI:6097563	pseudogene	predicted gene, 48184
10	gene	104.92649	104.93659	negative	MGI_C57BL6J_5623636	Gm40751	NCBI_Gene:105245274	MGI:5623636	lncRNA gene	predicted gene, 40751
10	gene	105.04027	105.04044	positive	MGI_C57BL6J_5455364	Gm25587	ENSEMBL:ENSMUSG00000064432	MGI:5455364	snRNA gene	predicted gene, 25587
10	gene	105.04029	105.04381	negative	MGI_C57BL6J_5623637	Gm40752	NCBI_Gene:105245275	MGI:5623637	lncRNA gene	predicted gene, 40752
10	gene	105.10282	105.10580	negative	MGI_C57BL6J_5623638	Gm40753	NCBI_Gene:105245276	MGI:5623638	lncRNA gene	predicted gene, 40753
10	gene	105.14021	105.14033	negative	MGI_C57BL6J_5455199	Gm25422	ENSEMBL:ENSMUSG00000077407	MGI:5455199	snoRNA gene	predicted gene, 25422
10	gene	105.14224	105.14294	negative	MGI_C57BL6J_5610225	Gm36997	ENSEMBL:ENSMUSG00000103775	MGI:5610225	unclassified gene	predicted gene, 36997
10	gene	105.18766	105.57448	negative	MGI_C57BL6J_1914057	Tmtc2	NCBI_Gene:278279,ENSEMBL:ENSMUSG00000036019	MGI:1914057	protein coding gene	transmembrane and tetratricopeptide repeat containing 2
10	gene	105.34025	105.34231	positive	MGI_C57BL6J_6097597	Gm48206	ENSEMBL:ENSMUSG00000112193	MGI:6097597	unclassified gene	predicted gene, 48206
10	gene	105.37734	105.37748	negative	MGI_C57BL6J_6097595	Gm48205	ENSEMBL:ENSMUSG00000112176	MGI:6097595	unclassified gene	predicted gene, 48205
10	gene	105.39250	105.39429	negative	MGI_C57BL6J_6097591	Gm48203	ENSEMBL:ENSMUSG00000112512	MGI:6097591	unclassified gene	predicted gene, 48203
10	gene	105.44085	105.45253	negative	MGI_C57BL6J_5825878	Gm46241	NCBI_Gene:108167831	MGI:5825878	lncRNA gene	predicted gene, 46241
10	pseudogene	105.50580	105.50860	negative	MGI_C57BL6J_3783108	Gm15666	NCBI_Gene:100416011,ENSEMBL:ENSMUSG00000084399	MGI:3783108	pseudogene	predicted gene 15666
10	gene	105.51468	105.51665	negative	MGI_C57BL6J_6097593	Gm48204	ENSEMBL:ENSMUSG00000112900	MGI:6097593	unclassified gene	predicted gene, 48204
10	pseudogene	105.52046	105.52064	positive	MGI_C57BL6J_3783106	Gm15664	ENSEMBL:ENSMUSG00000089904	MGI:3783106	pseudogene	predicted gene 15664
10	gene	105.52404	105.52636	negative	MGI_C57BL6J_1926067	4930588G05Rik	NA	NA	unclassified gene	RIKEN cDNA 4930588G05 gene
10	gene	105.53298	105.53449	negative	MGI_C57BL6J_6097599	Gm48207	ENSEMBL:ENSMUSG00000112571	MGI:6097599	unclassified gene	predicted gene, 48207
10	gene	105.57395	105.58387	positive	MGI_C57BL6J_3783105	Gm15663	NCBI_Gene:327812,ENSEMBL:ENSMUSG00000085282	MGI:3783105	lncRNA gene	predicted gene 15663
10	gene	105.76318	105.84138	negative	MGI_C57BL6J_3041259	Mettl25	NCBI_Gene:216292,ENSEMBL:ENSMUSG00000036009	MGI:3041259	protein coding gene	methyltransferase like 25
10	gene	105.80409	105.80420	negative	MGI_C57BL6J_4421928	n-R5s80	ENSEMBL:ENSMUSG00000084545	MGI:4421928	rRNA gene	nuclear encoded rRNA 5S 80
10	gene	105.80654	105.80887	negative	MGI_C57BL6J_6097740	Gm48298	ENSEMBL:ENSMUSG00000112820	MGI:6097740	unclassified gene	predicted gene, 48298
10	gene	105.83828	105.83964	negative	MGI_C57BL6J_1917182	2810004I08Rik	NA	NA	unclassified gene	RIKEN cDNA 2810004I08 gene
10	gene	105.84107	105.84783	positive	MGI_C57BL6J_1289302	Ccdc59	NCBI_Gene:52713,ENSEMBL:ENSMUSG00000019897	MGI:1289302	protein coding gene	coiled-coil domain containing 59
10	gene	105.92961	105.92974	negative	MGI_C57BL6J_5454014	Gm24237	ENSEMBL:ENSMUSG00000088415	MGI:5454014	snoRNA gene	predicted gene, 24237
10	gene	106.05596	106.05608	negative	MGI_C57BL6J_5455119	Gm25342	ENSEMBL:ENSMUSG00000088084	MGI:5455119	snoRNA gene	predicted gene, 25342
10	pseudogene	106.06586	106.06679	positive	MGI_C57BL6J_3643770	Gm8796	NCBI_Gene:667758,ENSEMBL:ENSMUSG00000111914	MGI:3643770	pseudogene	predicted gene 8796
10	gene	106.07423	106.07908	positive	MGI_C57BL6J_6097833	Gm48363	ENSEMBL:ENSMUSG00000112034	MGI:6097833	unclassified gene	predicted gene, 48363
10	pseudogene	106.16678	106.16926	negative	MGI_C57BL6J_6097853	Gm48376	ENSEMBL:ENSMUSG00000112668	MGI:6097853	pseudogene	predicted gene, 48376
10	gene	106.18302	106.18389	positive	MGI_C57BL6J_6097854	Gm48377	ENSEMBL:ENSMUSG00000112523	MGI:6097854	unclassified gene	predicted gene, 48377
10	pseudogene	106.19234	106.19279	negative	MGI_C57BL6J_3643034	Rps15a-ps1	NCBI_Gene:639162,ENSEMBL:ENSMUSG00000056877	MGI:3643034	pseudogene	ribosomal protein S15A, pseudogene 1
10	pseudogene	106.35832	106.35865	positive	MGI_C57BL6J_6097857	Gm48379	ENSEMBL:ENSMUSG00000112520	MGI:6097857	pseudogene	predicted gene, 48379
10	pseudogene	106.44440	106.44510	positive	MGI_C57BL6J_6097858	Gm48380	ENSEMBL:ENSMUSG00000112066	MGI:6097858	pseudogene	predicted gene, 48380
10	gene	106.46694	106.47077	negative	MGI_C57BL6J_3697434	C230021G24Rik	ENSEMBL:ENSMUSG00000097869	MGI:3697434	lncRNA gene	RIKEN cDNA C230021G24 gene
10	gene	106.47027	106.93595	positive	MGI_C57BL6J_2443834	Ppfia2	NCBI_Gene:327814,ENSEMBL:ENSMUSG00000053825	MGI:2443834	protein coding gene	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
10	pseudogene	106.50271	106.50337	positive	MGI_C57BL6J_3031390	Olfr1556-ps1	NCBI_Gene:259137,ENSEMBL:ENSMUSG00000108029	MGI:3031390	pseudogene	olfactory receptor 1556, pseudogene 1
10	gene	106.55519	106.60248	negative	MGI_C57BL6J_1923083	4930532I03Rik	NCBI_Gene:75833,ENSEMBL:ENSMUSG00000112201	MGI:1923083	lncRNA gene	RIKEN cDNA 4930532I03 gene
10	pseudogene	106.75381	106.75491	negative	MGI_C57BL6J_5010033	Gm17848	NCBI_Gene:100415977	MGI:5010033	pseudogene	predicted gene, 17848
10	gene	106.93352	106.93595	negative	MGI_C57BL6J_3028041	B230114P17Rik	NA	NA	unclassified gene	RIKEN cDNA B230114P17 gene
10	gene	106.93352	107.12367	negative	MGI_C57BL6J_2685720	Acss3	NCBI_Gene:380660,ENSEMBL:ENSMUSG00000035948	MGI:2685720	protein coding gene	acyl-CoA synthetase short-chain family member 3
10	pseudogene	106.94930	106.95017	positive	MGI_C57BL6J_5011192	Gm19007	NCBI_Gene:100418113,ENSEMBL:ENSMUSG00000112443	MGI:5011192	pseudogene	predicted gene, 19007
10	gene	107.03969	107.04319	negative	MGI_C57BL6J_2442573	E030002G19Rik	NA	NA	unclassified gene	RIKEN cDNA E030002G19 gene
10	pseudogene	107.05852	107.05935	negative	MGI_C57BL6J_5010225	Gm18040	NCBI_Gene:100416324,ENSEMBL:ENSMUSG00000112849	MGI:5010225	pseudogene	predicted gene, 18040
10	pseudogene	107.06104	107.06198	negative	MGI_C57BL6J_5011366	Gm19181	NCBI_Gene:100418393,ENSEMBL:ENSMUSG00000112863	MGI:5011366	pseudogene	predicted gene, 19181
10	gene	107.13697	107.13706	positive	MGI_C57BL6J_5454522	Gm24745	ENSEMBL:ENSMUSG00000088465	MGI:5454522	snoRNA gene	predicted gene, 24745
10	gene	107.19991	107.20578	negative	MGI_C57BL6J_5588833	Gm29674	NCBI_Gene:432500,ENSEMBL:ENSMUSG00000112466	MGI:5588833	lncRNA gene	predicted gene, 29674
10	gene	107.27160	107.42515	positive	MGI_C57BL6J_2135609	Lin7a	NCBI_Gene:108030,ENSEMBL:ENSMUSG00000019906	MGI:2135609	protein coding gene	lin-7 homolog A (C. elegans)
10	gene	107.33577	107.33595	positive	MGI_C57BL6J_1925661	3110033O22Rik	NA	NA	unclassified gene	RIKEN cDNA 3110033O22 gene
10	gene	107.43642	107.43736	negative	MGI_C57BL6J_5611345	Gm38117	ENSEMBL:ENSMUSG00000102934	MGI:5611345	unclassified gene	predicted gene, 38117
10	gene	107.48041	107.48053	positive	MGI_C57BL6J_5690795	Gm44403	ENSEMBL:ENSMUSG00000104558	MGI:5690795	miRNA gene	predicted gene, 44403
10	gene	107.48291	107.48693	negative	MGI_C57BL6J_97252	Myf5	NCBI_Gene:17877,ENSEMBL:ENSMUSG00000000435	MGI:97252	protein coding gene	myogenic factor 5
10	gene	107.49285	107.49474	negative	MGI_C57BL6J_97253	Myf6	NCBI_Gene:17878,ENSEMBL:ENSMUSG00000035923	MGI:97253	protein coding gene	myogenic factor 6
10	gene	107.49527	107.65940	positive	MGI_C57BL6J_5595336	Gm36177	NCBI_Gene:102639996	MGI:5595336	lncRNA gene	predicted gene, 36177
10	gene	107.51436	107.72008	negative	MGI_C57BL6J_1096349	Ptprq	NCBI_Gene:237523,ENSEMBL:ENSMUSG00000035916	MGI:1096349	protein coding gene	protein tyrosine phosphatase, receptor type, Q
10	gene	107.76053	107.91229	negative	MGI_C57BL6J_3647600	Otogl	NCBI_Gene:628870,ENSEMBL:ENSMUSG00000091455	MGI:3647600	protein coding gene	otogelin-like
10	gene	107.94665	107.97783	positive	MGI_C57BL6J_5588844	Gm29685	NCBI_Gene:628877,ENSEMBL:ENSMUSG00000112910	MGI:5588844	lncRNA gene	predicted gene, 29685
10	pseudogene	108.14169	108.14243	negative	MGI_C57BL6J_6097298	Gm47999	ENSEMBL:ENSMUSG00000112401	MGI:6097298	pseudogene	predicted gene, 47999
10	gene	108.15050	108.16044	negative	MGI_C57BL6J_5623639	Gm40754	NCBI_Gene:105245277	MGI:5623639	lncRNA gene	predicted gene, 40754
10	gene	108.16183	108.28448	positive	MGI_C57BL6J_1309528	Ppp1r12a	NCBI_Gene:17931,ENSEMBL:ENSMUSG00000019907	MGI:1309528	protein coding gene	protein phosphatase 1, regulatory subunit 12A
10	gene	108.17981	108.18492	positive	MGI_C57BL6J_2443885	C430003N24Rik	NA	NA	unclassified gene	RIKEN cDNA C430003N24 gene
10	gene	108.32237	108.33273	negative	MGI_C57BL6J_5623640	Gm40755	NCBI_Gene:105245278	MGI:5623640	protein coding gene	predicted gene, 40755
10	gene	108.33212	108.41439	positive	MGI_C57BL6J_2149961	Pawr	NCBI_Gene:114774,ENSEMBL:ENSMUSG00000035873	MGI:2149961	protein coding gene	PRKC, apoptosis, WT1, regulator
10	gene	108.36366	108.36380	positive	MGI_C57BL6J_5452882	Gm23105	ENSEMBL:ENSMUSG00000065653	MGI:5452882	snoRNA gene	predicted gene, 23105
10	gene	108.41725	108.45330	positive	MGI_C57BL6J_5595442	Gm36283	NCBI_Gene:102640148,ENSEMBL:ENSMUSG00000112532	MGI:5595442	lncRNA gene	predicted gene, 36283
10	gene	108.42807	108.42816	positive	MGI_C57BL6J_5455368	Gm25591	ENSEMBL:ENSMUSG00000093762	MGI:5455368	miRNA gene	predicted gene, 25591
10	gene	108.44432	108.44481	negative	MGI_C57BL6J_5595599	Gm36440	NCBI_Gene:102640357	MGI:5595599	lncRNA gene	predicted gene, 36440
10	gene	108.45576	108.51207	positive	MGI_C57BL6J_5595760	Gm36601	NCBI_Gene:105245279	MGI:5595760	lncRNA gene	predicted gene, 36601
10	pseudogene	108.48265	108.48299	positive	MGI_C57BL6J_6096432	Gm47466	ENSEMBL:ENSMUSG00000112065	MGI:6096432	pseudogene	predicted gene, 47466
10	gene	108.49765	109.01098	negative	MGI_C57BL6J_99667	Syt1	NCBI_Gene:20979,ENSEMBL:ENSMUSG00000035864	MGI:99667	protein coding gene	synaptotagmin I
10	gene	108.54576	108.54794	negative	MGI_C57BL6J_2444139	A830054O04Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA A830054O04 gene
10	gene	108.63700	108.64008	negative	MGI_C57BL6J_1925527	5330428N10Rik	NA	NA	unclassified gene	RIKEN cDNA 5330428N10 gene
10	gene	108.68501	108.68579	negative	MGI_C57BL6J_1924638	C030018G05Rik	NA	NA	unclassified gene	RIKEN cDNA C030018G05 gene
10	gene	108.69876	108.70016	negative	MGI_C57BL6J_3647286	Gm5136	NCBI_Gene:368203,ENSEMBL:ENSMUSG00000112039	MGI:3647286	protein coding gene	predicted gene 5136
10	gene	108.71151	108.71228	negative	MGI_C57BL6J_1924887	C030044C18Rik	NA	NA	unclassified gene	RIKEN cDNA C030044C18 gene

Additive covariates

Significance thresholds

operm <- scan1perm(pr.qc, covars["age.of.onset"], model="normal", addcovar=addcovar, n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	7.629271	13.25285
0.05	6.957827	12.92296
0.1	6.116428	12.49158

Genome-wide scan

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
#par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - ICI vs. EOI (ith additive covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')

  }
}


print("with no kinship")

[1] “with no kinship”

outfa <- scan1(pr.qc, covars["age.of.onset"], Xcovar=Xcovar, model="normal", addcovar=addcovar)

plot_lod(outfa,gm$gmap)

print("with normal kinship")

[1] “with normal kinship”

outka <- scan1(pr.qc, covars["age.of.onset"], Xcovar=Xcovar, model="normal", addcovar=addcovar, kinship=kinship)

plot_lod(outka,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

outa <- scan1(pr.qc, covars["age.of.onset"], Xcovar=Xcovar, model="normal", addcovar=addcovar, kinship=K)

plot_lod(outa,gm$gmap)

out = outa

print(paste0("number of samples in analysis = ", as.data.frame(attributes(out)$sample_size)[1,]))

[1] “number of samples in analysis = 266”

LOD peaks

Centimorgan (cM)

peaks<-find_peaks(out, gm$gmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)
if(nrow(peaks) > 0){
peaks$marker <- find_marker(gm$gmap, chr=peaks$chr,pos=peaks$pos)
names(peaks)[2] <- c("phenotype")
peaks <- peaks[-1]

rownames(peaks) <- NULL
print(kable(peaks, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

#plot only peak chromosomes

plot_lod_chr<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (with additive covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()

  }
}


} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 6.95782667376722 [autosomes]/12.9229644168208 [x-chromosome]”

if(nrow(peaks) < 50 & nrow(peaks) > 0){

for(i in unique(peaks$chr)){
#for (i in 1:nrow(peaks)){
  #plot_lod_chr(out,gm$gmap, peaks$chr[i])
  plot_lod_chr(out,gm$gmap, i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 6.95782667376722 [autosomes]/12.9229644168208 [x-chromosome]”

Megabase (MB)

peaks_mba<-find_peaks(out, gm$pmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)
if(nrow(peaks) > 0){
peaks_mba$marker <- find_marker(gm$pmap, chr=peaks_mba$chr,pos=peaks_mba$pos)
names(peaks_mba)[2] <- c("phenotype")
peaks_mba <- peaks_mba[-1]

rownames(peaks_mba) <- NULL
print(kable(peaks_mba, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

plot_lod_chr_mb<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (with additive covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 6.95782667376722 [autosomes]/12.9229644168208 [x-chromosome]”

if(nrow(peaks_mba) < 50 & nrow(peaks_mba) > 0){

for(i in unique(peaks_mba$chr)){
#for (i in 1:nrow(peaks_mba)){
  #plot_lod_chr_mb(out,gm$pmap, peaks_mba$chr[i])
  plot_lod_chr_mb(out,gm$pmap,i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 6.95782667376722 [autosomes]/12.9229644168208 [x-chromosome]”

QTL effects

For each peak LOD location we give a list of gene

if(nrow(peaks) < 50 & nrow(peaks) > 0){
for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE)
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(g, covars[,peaks$phenotype[i]], ylab=peaks$phenotype[i], sort=FALSE)
  title(main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," )"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  pr_sub <- pull_genoprobint(pr.qc, gm$gmap, chr, c(peaks$ci_lo[i], peaks$ci_hi[i]))
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  #coeff <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  #coeff_sub <- scan1coef(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  blup <- scan1blup(pr.qc[,chr], covars[peaks$phenotype[i]])
  blup_sub <- scan1blup(pr_sub[,chr], covars[peaks$phenotype[i]])

  write.csv(as.data.frame(blup_sub), paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-additive.covariates_blup_sub_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_0.csv"), quote=F)

  #plot_coef(coeff, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1coeff; positions in cM] )")
  #     )

  #plot_coef(coeff_sub, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1coeff; positions in cM] ) ")
  #     )


  plot_coef(blup, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," [scan1blup; positions in cM] )")
       )

  plot_coef(blup_sub, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i],"; 1.5 LOD drop interval [scan1blup; positions in cM] )")
       )


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  write.csv(genesgss, file=paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-additive.covariates_genes_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_0.csv"), quote=F)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  #genesgss <- 
  #table <- 
  #genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")] %>%
  #kable(escape = F,align = c("ccccccccccc")) %>%
  #kable_styling("striped", full_width = T) #%>% 
  #cat #%>%
  #column_spec(1, bold=TRUE)
#
  #print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], escape = F,align = c("ccccccccccc")))

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  #table
  

}
} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 6.95782667376722 [autosomes]/12.9229644168208 [x-chromosome]”

Interactive term

Significance thresholds

operm <- scan1perm(pr.qc, covars["age.of.onset"], model="normal", addcovar=addcovar, intcovar=addcovar, n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	9.633582	14.67763
0.05	8.834491	14.11078
0.1	7.833135	13.36952

Genome-wide scan

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
#par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - ICI vs. EOI (with interactive covariate) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')

  }
}


print("with no kinship")

[1] “with no kinship”

outfi <- scan1(pr.qc, covars["age.of.onset"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar)

plot_lod(outfi,gm$gmap)

outf.new <- outfi-outfa

plot_lod(outf.new,gm$gmap)

print("with normal kinship")

[1] “with normal kinship”

outki <- scan1(pr.qc, covars["age.of.onset"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar, kinship=kinship)

plot_lod(outki,gm$gmap)

outk.new <- outki-outka

plot_lod(outk.new,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

outi <- scan1(pr.qc, covars["age.of.onset"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar, kinship=K)

plot_lod(outi,gm$gmap)

outi.new <- outi-outa

plot_lod(outi.new,gm$gmap)

out = outi.new

print(paste0("number of samples in analysis = ", as.data.frame(attributes(out)$sample_size)[1,]))

[1] “number of samples in analysis = 266”

LOD peaks

Centimorgan (cM)

peaks<-find_peaks(out, gm$gmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)
if(nrow(peaks) > 0){
peaks$marker <- find_marker(gm$gmap, chr=peaks$chr,pos=peaks$pos)
names(peaks)[2] <- c("phenotype")
peaks <- peaks[-1]

rownames(peaks) <- NULL
print(kable(peaks, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

#plot only peak chromosomes

plot_lod_chr<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (with interactive covariate) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()

  }
}


} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 8.83449090914358 [autosomes]/14.110778221343 [x-chromosome]”

if(nrow(peaks) < 50 & nrow(peaks) > 0){

for(i in unique(peaks$chr)){
#for (i in 1:nrow(peaks)){
  #plot_lod_chr(out,gm$gmap, peaks$chr[i])
  plot_lod_chr(out,gm$gmap, i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 8.83449090914358 [autosomes]/14.110778221343 [x-chromosome]”

Megabase (MB)

peaks_mba<-find_peaks(out, gm$pmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)
if(nrow(peaks) > 0){
peaks_mba$marker <- find_marker(gm$pmap, chr=peaks_mba$chr,pos=peaks_mba$pos)
names(peaks_mba)[2] <- c("phenotype")
peaks_mba <- peaks_mba[-1]

rownames(peaks_mba) <- NULL
print(kable(peaks_mba, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

plot_lod_chr_mb<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (with interactive covariate) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 8.83449090914358 [autosomes]/14.110778221343 [x-chromosome]”

if(nrow(peaks_mba) < 50 & nrow(peaks_mba) > 0){

for(i in unique(peaks_mba$chr)){
#for (i in 1:nrow(peaks_mba)){
  #plot_lod_chr_mb(out,gm$pmap, peaks_mba$chr[i])
  plot_lod_chr_mb(out,gm$pmap,i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 8.83449090914358 [autosomes]/14.110778221343 [x-chromosome]”

QTL effects

For each peak LOD location we give a list of gene

if(nrow(peaks) < 50 & nrow(peaks) > 0){
for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE)
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(g, covars[,peaks$phenotype[i]], ylab=peaks$phenotype[i], sort=FALSE)
  title(main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," )"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  pr_sub <- pull_genoprobint(pr.qc, gm$gmap, chr, c(peaks$ci_lo[i], peaks$ci_hi[i]))
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  #coeff <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  #coeff_sub <- scan1coef(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  blup <- scan1blup(pr.qc[,chr], covars[peaks$phenotype[i]])
  blup_sub <- scan1blup(pr_sub[,chr], covars[peaks$phenotype[i]])

  write.csv(as.data.frame(blup_sub), paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-interactive.covariate_blup_sub_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_0.csv"), quote=F)

  #plot_coef(coeff, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1coeff; positions in cM] )")
  #     )

  #plot_coef(coeff_sub, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1coeff; positions in cM] ) ")
  #     )


  plot_coef(blup, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," [scan1blup; positions in cM] )")
       )

  plot_coef(blup_sub, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i],"; 1.5 LOD drop interval [scan1blup; positions in cM] )")
       )


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  write.csv(genesgss, file=paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-interactive.covariate_genes_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_0.csv"), quote=F)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  #genesgss <- 
  #table <- 
  #genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")] %>%
  #kable(escape = F,align = c("ccccccccccc")) %>%
  #kable_styling("striped", full_width = T) #%>% 
  #cat #%>%
  #column_spec(1, bold=TRUE)
#
  #print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], escape = F,align = c("ccccccccccc")))

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  #table
  

}
} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 8.83449090914358 [autosomes]/14.110778221343 [x-chromosome]”

Session information

R version 3.6.2 (2019-12-12)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Catalina 10.15.7

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] abind_1.4-5       qtl2_0.22         reshape2_1.4.4    ggplot2_3.3.5    
 [5] tibble_3.1.2      psych_2.0.7       readxl_1.3.1      cluster_2.1.0    
 [9] dplyr_1.0.8       optparse_1.6.6    rhdf5_2.28.1      mclust_5.4.6     
[13] tidyr_1.0.2       data.table_1.14.0 knitr_1.33        kableExtra_1.1.0 
[17] workflowr_1.6.2  

loaded via a namespace (and not attached):
 [1] httr_1.4.1        bit64_4.0.5       viridisLite_0.4.0 assertthat_0.2.1 
 [5] highr_0.9         blob_1.2.1        cellranger_1.1.0  yaml_2.2.1       
 [9] pillar_1.6.1      RSQLite_2.2.7     backports_1.2.1   lattice_0.20-38  
[13] glue_1.4.2        digest_0.6.27     promises_1.1.0    rvest_0.3.5      
[17] colorspace_2.0-2  htmltools_0.5.1.1 httpuv_1.5.2      plyr_1.8.6       
[21] pkgconfig_2.0.3   purrr_0.3.4       scales_1.1.1      webshot_0.5.2    
[25] getopt_1.20.3     later_1.0.0       git2r_0.26.1      generics_0.0.2   
[29] ellipsis_0.3.2    cachem_1.0.5      withr_2.4.2       cli_3.0.0        
[33] mnormt_1.5-7      magrittr_2.0.1    crayon_1.4.1      memoise_2.0.0    
[37] evaluate_0.14     fs_1.4.1          fansi_0.5.0       nlme_3.1-142     
[41] xml2_1.3.1        tools_3.6.2       hms_0.5.3         lifecycle_1.0.1  
[45] stringr_1.4.0     Rhdf5lib_1.6.3    munsell_0.5.0     compiler_3.6.2   
[49] rlang_1.0.2       grid_3.6.2        rstudioapi_0.13   rmarkdown_2.1    
[53] gtable_0.3.0      DBI_1.1.1         R6_2.5.0          fastmap_1.1.0    
[57] bit_4.0.4         utf8_1.2.1        rprojroot_1.3-2   readr_1.3.1      
[61] stringi_1.7.2     parallel_3.6.2    Rcpp_1.0.7        vctrs_0.3.8      
[65] tidyselect_1.1.2  xfun_0.24