QTL Analysis - rz transformed age of onset (rz.age) [ICI vs EOI] (corrected phenotype with outliers removed if any)

workflowr

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Last updated: 2022-04-14

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Knit directory: Serreze-T1D_Workflow/

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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-11_peak.marker-UNC20090524_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008229_lod.drop-1.5_5.batches_mis.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008271_lod.drop-1.5_5.batches_mis.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008432_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008627_lod.drop-1.5_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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Unstaged changes:
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici.vs.eoi_snpsqc_dis_no-x_updated.Rmd
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
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    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
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    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
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    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
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    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis.Rmd
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    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/index_5.batches.Rmd
    Modified:   analysis/index_5.batches_additional.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

---

There are no past versions. Publish this analysis with wflow_publish() to start tracking its development.

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Loading Data

load("data/gm_allqc_5.batches.RData")

#gm_allqc
gm=gm_allqc
gm

Object of class cross2 (crosstype "bc")

Total individuals              308
No. genotyped individuals      308
No. phenotyped individuals     308
No. with both geno & pheno     308

No. phenotypes                   1
No. covariates                   6
No. phenotype covariates         0

No. chromosomes                 20
Total markers                34537

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
2643 2629 1857 1890 1774 1941 1672 1627 1878 1176 1871 1300 1549 1578 1257  935 
  17   18   19    X 
 501  913 1014 4532 

#pr <- readRDS("data/serreze_probs_allqc.rds")
#pr <- readRDS("data/serreze_probs.rds")

##extracting animals with ici and eoi group status
miceinfo <- gm$covar[gm$covar$group == "EOI" | gm$covar$group == "ICI",]
table(miceinfo$group)

EOI ICI 
164 104 

mice.ids <- rownames(miceinfo)

gm <- gm[mice.ids]
gm

Object of class cross2 (crosstype "bc")

Total individuals              268
No. genotyped individuals      268
No. phenotyped individuals     268
No. with both geno & pheno     268

No. phenotypes                   1
No. covariates                   6
No. phenotype covariates         0

No. chromosomes                 20
Total markers                34537

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
2643 2629 1857 1890 1774 1941 1672 1627 1878 1176 1871 1300 1549 1578 1257  935 
  17   18   19    X 
 501  913 1014 4532 

table(gm$covar$group)

EOI ICI 
164 104 

gm.full <- gm



covars <- read_csv("data/covar_corrected.cleaned_ici.vs.eoi_5.batches_0.csv")
#removing any missing info
missing_ids <- covars[which(covars$"rz.age"==""),]$Mouse.ID
length(missing_ids)

[1] 1

missing_ids

[1] "NG00522-ICI-LATE"

if(length(missing_ids) != 0){
gm <- gm[paste0("-",as.character(missing_ids)),]
gm
table(gm$covar$group)

#keeping only mouseids in covars
covars <- covars[gm$covar$id,]
table(covars$group)
}

EOI ICI 
164 103 

#covars[covars$age.of.onset==0,]$age.of.onset <- ''


query_variants <- create_variant_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/cc_variants.sqlite")
query_genes <- create_gene_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/mouse_genes_mgi.sqlite")


##removing problmetic marker

gm <- drop_markers(gm, "UNCHS013106")

#pmap_interp = interp_map(map, gm$gmap, gm$pmap)
markers <- marker_names(gm)
gmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_5.batches/genetic_map.csv")
pmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_5.batches/physical_map.csv")
#mapdf <- merge(gmapdf,pmapdf, by=c("marker","chr"), all=T)
#rownames(mapdf) <- mapdf$marker
#mapdf <- mapdf[markers,]
#names(mapdf) <- c('marker','chr','gmapdf','pmapdf')
#mapdfnd <- mapdf[!duplicated(mapdf[c(2:3)]),]

pr.qc <- calc_genoprob(gm)

gm

Object of class cross2 (crosstype "bc")

Total individuals              267
No. genotyped individuals      267
No. phenotyped individuals     267
No. with both geno & pheno     267

No. phenotypes                   1
No. covariates                   6
No. phenotype covariates         0

No. chromosomes                 20
Total markers                34537

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
2643 2629 1857 1890 1774 1941 1672 1627 1878 1176 1871 1300 1549 1578 1257  935 
  17   18   19    X 
 501  913 1014 4532 

Preparing necessary info

covars$rz.age <- as.numeric(covars$rz.age)
Xcovar <- get_x_covar(gm)
addcovar = model.matrix(~ICI.vs.EOI, data = covars)[,-1]
#addcovar.i = model.matrix(~ICI.vs.EOI, data = covars)[,-1]

K <- calc_kinship(pr.qc, type = "loco")
#heatmap(K[[1]])
K.overall <- calc_kinship(pr.qc, type = "overall")
#heatmap(K.overall)
kinship <- calc_kinship(pr.qc)
heatmap(kinship)

No additive covariates

Significance thresholds

operm <- scan1perm(pr.qc, covars["rz.age"], model="normal", n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	3.103325	5.005135
0.05	2.936908	4.711528
0.1	2.728368	4.327585

Genome-wide scan

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
#par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - ICI vs. EOI (no covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')

  }
}


print("with no kinship")

[1] “with no kinship”

outf <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal")

plot_lod(outf,gm$gmap)

print("with normal kinship")

[1] “with normal kinship”

outk <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", kinship=kinship)

plot_lod(outk,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

out <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", kinship=K)

plot_lod(out,gm$gmap)

print(paste0("number of samples in analysis = ", as.data.frame(attributes(out)$sample_size)[1,]))

[1] “number of samples in analysis = 267”

LOD peaks

Centimorgan (cM)

peaks<-find_peaks(out, gm$gmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)

if(nrow(peaks) > 0){
peaks$marker <- find_marker(gm$gmap, chr=peaks$chr,pos=peaks$pos)
names(peaks)[2] <- c("phenotype")
peaks <- peaks[-1]

rownames(peaks) <- NULL
print(kable(peaks, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

#plot only peak chromosomes

plot_lod_chr<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (no covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()

  }
}


} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

phenotype	chr	pos	lod	ci_lo	ci_hi	marker
rz.age	3	5.562000	3.818750	2.124	5.822	UNC4813186
rz.age	3	6.943333	4.605390	6.356	7.572	UNC4837069
rz.age	3	9.465000	4.521028	7.603	10.190	JAX00219554
rz.age	3	10.815000	5.897553	10.282	10.970	UNC4912039
rz.age	3	11.391000	5.897554	10.982	11.971	UNC4924377
rz.age	3	12.290000	5.782550	12.254	12.989	UNCHS008286
rz.age	3	13.715000	5.891007	13.052	15.109	UNC4957168
rz.age	3	16.414000	5.813801	15.290	16.966	UNC5008656
rz.age	3	18.746000	7.491257	17.482	19.077	UNC5083168
rz.age	3	20.718000	7.451219	20.613	20.774	JAX00106957
rz.age	3	20.879000	7.124942	20.784	21.549	UNC5192582
rz.age	3	21.687333	6.867859	21.580	22.187	UNCHS008613
rz.age	3	23.137000	6.299792	22.489	23.199	UNC5262472
rz.age	3	23.437000	6.378744	23.380	27.894	UNC5266664
rz.age	3	29.002000	5.558554	28.262	30.167	UNCHS008815
rz.age	3	31.805000	5.477456	30.203	32.529	UNC5454839
rz.age	3	32.823000	4.485128	32.607	33.376	ICR1338
rz.age	3	33.724000	4.499413	33.391	33.741	UNCHS009067
rz.age	3	34.841000	4.699274	33.825	35.168	JAX00220631
rz.age	3	36.068000	3.857035	36.023	40.163	UNC5645844
rz.age	10	38.425000	3.204739	34.740	38.502	JAX00292927
rz.age	10	40.502000	3.575038	40.301	41.292	UNC18311938
rz.age	10	41.494000	3.567013	41.319	41.720	UNC18343181
rz.age	10	43.651000	3.905120	42.028	43.919	UNC18376338
rz.age	10	44.382000	3.331703	44.060	56.696	UNCHS029024

if(nrow(peaks) < 50 & nrow(peaks) > 0){

for(i in unique(peaks$chr)){
#for (i in 1:nrow(peaks)){
  #plot_lod_chr(out,gm$gmap, peaks$chr[i])
  plot_lod_chr(out,gm$gmap, i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

Megabase (MB)

peaks_mba<-find_peaks(out, gm$pmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)
if(nrow(peaks) > 0){
peaks_mba$marker <- find_marker(gm$pmap, chr=peaks_mba$chr,pos=peaks_mba$pos)
names(peaks_mba)[2] <- c("phenotype")
peaks_mba <- peaks_mba[-1]

rownames(peaks_mba) <- NULL
print(kable(peaks_mba, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

  plot_lod_chr_mb<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (no covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

phenotype	chr	pos	lod	ci_lo	ci_hi	marker
rz.age	3	19.48622	3.818750	7.917057	19.72964	UNC4813186
rz.age	3	21.08393	4.605390	20.305499	22.03573	UNC4837069
rz.age	3	24.17913	4.521028	22.177798	25.28624	JAX00219554
rz.age	3	27.03622	5.897553	25.426933	27.55791	UNCHS008242
rz.age	3	28.01969	5.897554	27.583922	28.41152	UNC4924377
rz.age	3	28.70005	5.782550	28.647890	30.20381	UNCHS008286
rz.age	3	30.41146	5.891007	30.221767	31.08157	UNC4957168
rz.age	3	34.01961	5.813801	31.479710	34.95587	UNC5008656
rz.age	3	38.94808	7.491257	36.524146	39.72051	UNC5083168
rz.age	3	46.39933	7.451219	46.093688	46.77335	JAX00106957
rz.age	3	47.51865	7.124942	47.267935	48.88766	UNC5192582
rz.age	3	49.60906	6.867859	48.950852	51.24592	UNCHS008613
rz.age	3	52.22783	6.299792	51.504201	52.28869	UNC5262472
rz.age	3	52.52321	6.378744	52.466515	57.56748	UNC5266664
rz.age	3	59.18647	5.558554	58.021842	64.96586	UNCHS008815
rz.age	3	68.53602	5.477456	65.480179	70.64883	UNC5454839
rz.age	3	73.26997	4.485128	72.338635	73.73010	ICR1338
rz.age	3	75.30888	4.499413	73.742144	75.51898	UNCHS009068
rz.age	3	78.26134	4.699274	75.789940	79.93182	JAX00220631
rz.age	3	81.94948	3.857035	81.864954	92.67753	UNC5645844
rz.age	10	74.69315	3.204739	66.318309	75.00161	JAX00292927
rz.age	10	82.34722	3.575038	81.661568	83.57383	UNC18311938
rz.age	10	84.67176	3.567013	84.093735	85.65568	UNC18343181
rz.age	10	87.54037	3.905120	86.109709	88.25130	UNC18376338
rz.age	10	88.92297	3.331703	88.459680	108.74474	UNCHS029024

if(nrow(peaks_mba) < 50 & nrow(peaks_mba) > 0){

for(i in unique(peaks_mba$chr)){
#for (i in 1:nrow(peaks_mba)){
  #plot_lod_chr_mb(out,gm$pmap, peaks_mba$chr[i])
  plot_lod_chr_mb(out,gm$pmap,i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

QTL effects

For each peak LOD location we give a list of gene

if(nrow(peaks) < 50 & nrow(peaks) > 0){
for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE)
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(g, covars[,peaks$phenotype[i]], ylab=peaks$phenotype[i], sort=FALSE)
  title(main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," )"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  pr_sub <- pull_genoprobint(pr.qc, gm$gmap, chr, c(peaks$ci_lo[i], peaks$ci_hi[i]))
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  #coeff <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  #coeff_sub <- scan1coef(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  blup <- scan1blup(pr.qc[,chr], covars[peaks$phenotype[i]])
  blup_sub <- scan1blup(pr_sub[,chr], covars[peaks$phenotype[i]])

  write.csv(as.data.frame(blup_sub), paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-no.covariates_blup_sub_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_0.csv"), quote=F)

  #plot_coef(coeff, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1coeff; positions in cM] )")
  #     )

  #plot_coef(coeff_sub, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1coeff; positions in cM] ) ")
  #     )


  plot_coef(blup, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," [scan1blup; positions in cM] )")
       )

  plot_coef(blup_sub, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i],"; 1.5 LOD drop interval [scan1blup; positions in cM] )")
       )


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  write.csv(genesgss, file=paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-no.covariates_genes_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_0.csv"), quote=F)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  #genesgss <- 
  #table <- 
  #genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")] %>%
  #kable(escape = F,align = c("ccccccccccc")) %>%
  #kable_styling("striped", full_width = T) #%>% 
  #cat #%>%
  #column_spec(1, bold=TRUE)
#
  #print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], escape = F,align = c("ccccccccccc")))

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  #table
  

}

} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	7.925303	7.954889	negative	MGI_C57BL6J_1922726	1700010I02Rik	NCBI_Gene:75476,ENSEMBL:ENSMUSG00000100010	MGI:1922726	lncRNA gene	RIKEN cDNA 1700010I02 gene
3	gene	8.019669	8.022831	negative	MGI_C57BL6J_3642332	5330432E05Rik	NCBI_Gene:383820	MGI:3642332	unclassified gene	RIKEN cDNA 5330432E05 gene
3	pseudogene	8.214330	8.216183	positive	MGI_C57BL6J_3646860	Gm7103	NCBI_Gene:633072,ENSEMBL:ENSMUSG00000103725	MGI:3646860	pseudogene	predicted gene 7103
3	gene	8.245438	8.245537	negative	MGI_C57BL6J_3629711	Gt(pU21)108Imeg	NA	NA	unclassified gene	gene trap 108%2c Institute of Molecular Embryology and Genetics
3	pseudogene	8.327322	8.329907	positive	MGI_C57BL6J_3645248	Gm5841	NCBI_Gene:545500,ENSEMBL:ENSMUSG00000103921	MGI:3645248	pseudogene	predicted gene 5841
3	gene	8.429158	8.429264	positive	MGI_C57BL6J_5454391	Gm24614	ENSEMBL:ENSMUSG00000065203	MGI:5454391	snRNA gene	predicted gene, 24614
3	pseudogene	8.461387	8.463098	negative	MGI_C57BL6J_3704094	Gm6194	NCBI_Gene:620966	MGI:3704094	pseudogene	predicted gene 6194
3	pseudogene	8.462228	8.463035	negative	MGI_C57BL6J_1919464	1700003N22Rik	ENSEMBL:ENSMUSG00000102463	MGI:1919464	pseudogene	RIKEN cDNA 1700003N22 gene
3	gene	8.494369	8.499902	negative	MGI_C57BL6J_5624878	Gm41993	NCBI_Gene:105246751	MGI:5624878	lncRNA gene	predicted gene, 41993
3	gene	8.509360	8.561606	positive	MGI_C57BL6J_98241	Stmn2	NCBI_Gene:20257,ENSEMBL:ENSMUSG00000027500	MGI:98241	protein coding gene	stathmin-like 2
3	pseudogene	8.615074	8.616522	negative	MGI_C57BL6J_5011007	Gm18822	NCBI_Gene:100417782,ENSEMBL:ENSMUSG00000098047	MGI:5011007	pseudogene	predicted gene, 18822
3	gene	8.628051	8.632454	positive	MGI_C57BL6J_5591655	Gm32496	NCBI_Gene:102635065,ENSEMBL:ENSMUSG00000104102	MGI:5591655	lncRNA gene	predicted gene, 32496
3	gene	8.663359	8.667256	negative	MGI_C57BL6J_1341800	Hey1	NCBI_Gene:15213,ENSEMBL:ENSMUSG00000040289	MGI:1341800	protein coding gene	hairy/enhancer-of-split related with YRPW motif 1
3	pseudogene	8.673410	8.673722	positive	MGI_C57BL6J_5611235	Gm38007	ENSEMBL:ENSMUSG00000103814	MGI:5611235	pseudogene	predicted gene, 38007
3	gene	8.679359	8.679477	negative	MGI_C57BL6J_5453447	Gm23670	ENSEMBL:ENSMUSG00000088094	MGI:5453447	snoRNA gene	predicted gene, 23670
3	gene	8.679438	8.693098	negative	MGI_C57BL6J_5591720	Gm32561	NCBI_Gene:102635149	MGI:5591720	lncRNA gene	predicted gene, 32561
3	gene	8.732188	8.736639	negative	MGI_C57BL6J_2686488	C230057A21Rik	NCBI_Gene:102635252,ENSEMBL:ENSMUSG00000103346	MGI:2686488	lncRNA gene	RIKEN cDNA C230057A21 gene
3	gene	8.743677	8.746824	positive	MGI_C57BL6J_1923855	1700042O13Rik	NA	NA	lncRNA gene	RIKEN cDNA 1700042O13 gene
3	gene	8.743682	8.746824	negative	MGI_C57BL6J_5610875	Gm37647	ENSEMBL:ENSMUSG00000103256	MGI:5610875	unclassified gene	predicted gene, 37647
3	gene	8.802146	8.923918	negative	MGI_C57BL6J_1913480	Mrps28	NCBI_Gene:66230,ENSEMBL:ENSMUSG00000040269	MGI:1913480	protein coding gene	mitochondrial ribosomal protein S28
3	gene	8.866119	8.881665	positive	MGI_C57BL6J_5624880	Gm41995	NCBI_Gene:105246753	MGI:5624880	lncRNA gene	predicted gene, 41995
3	pseudogene	8.881199	8.881643	positive	MGI_C57BL6J_3705388	Gm15467	ENSEMBL:ENSMUSG00000081594	MGI:3705388	pseudogene	predicted gene 15467
3	pseudogene	8.881990	8.882945	negative	MGI_C57BL6J_3705491	Gm15466	NCBI_Gene:100504173,ENSEMBL:ENSMUSG00000081657	MGI:3705491	pseudogene	predicted gene 15466
3	gene	8.925590	8.928038	positive	MGI_C57BL6J_1918835	9130403I23Rik	NA	NA	unclassified gene	RIKEN cDNA 9130403I23 gene
3	gene	8.925593	9.004771	negative	MGI_C57BL6J_107749	Tpd52	NCBI_Gene:21985,ENSEMBL:ENSMUSG00000027506	MGI:107749	protein coding gene	tumor protein D52
3	gene	9.027570	9.029901	positive	MGI_C57BL6J_5826469	Gm46832	NCBI_Gene:108168912	MGI:5826469	lncRNA gene	predicted gene, 46832
3	pseudogene	9.047171	9.047492	negative	MGI_C57BL6J_5610844	Gm37616	ENSEMBL:ENSMUSG00000103461	MGI:5610844	pseudogene	predicted gene, 37616
3	gene	9.061964	9.071076	positive	MGI_C57BL6J_1922399	4930539M17Rik	NCBI_Gene:75149,ENSEMBL:ENSMUSG00000103116	MGI:1922399	lncRNA gene	RIKEN cDNA 4930539M17 gene
3	pseudogene	9.072767	9.073211	positive	MGI_C57BL6J_3648010	Gm8860	ENSEMBL:ENSMUSG00000103011	MGI:3648010	pseudogene	predicted gene 8860
3	gene	9.157271	9.174711	negative	MGI_C57BL6J_5624881	Gm41996	NCBI_Gene:105246754	MGI:5624881	lncRNA gene	predicted gene, 41996
3	gene	9.177692	9.182437	negative	MGI_C57BL6J_5592177	Gm33018	NCBI_Gene:102635764	MGI:5592177	lncRNA gene	predicted gene, 33018
3	gene	9.250567	9.285333	positive	MGI_C57BL6J_2139883	Zbtb10	NCBI_Gene:229055,ENSEMBL:ENSMUSG00000069114	MGI:2139883	protein coding gene	zinc finger and BTB domain containing 10
3	gene	9.302688	9.343835	negative	MGI_C57BL6J_5624882	Gm41997	NCBI_Gene:105246755	MGI:5624882	lncRNA gene	predicted gene, 41997
3	gene	9.402175	9.402485	positive	MGI_C57BL6J_5452381	Gm22604	ENSEMBL:ENSMUSG00000088229	MGI:5452381	unclassified non-coding RNA gene	predicted gene, 22604
3	gene	9.403064	9.437233	positive	MGI_C57BL6J_2444519	C030034L19Rik	NCBI_Gene:320088,ENSEMBL:ENSMUSG00000097365	MGI:2444519	lncRNA gene	RIKEN cDNA C030034L19 gene
3	gene	9.427010	9.610085	negative	MGI_C57BL6J_2180715	Zfp704	NCBI_Gene:170753,ENSEMBL:ENSMUSG00000040209	MGI:2180715	protein coding gene	zinc finger protein 704
3	gene	9.496168	9.499928	positive	MGI_C57BL6J_5611229	Gm38001	ENSEMBL:ENSMUSG00000103485	MGI:5611229	unclassified gene	predicted gene, 38001
3	gene	9.646323	9.663118	negative	MGI_C57BL6J_5592328	Gm33169	NCBI_Gene:102635968	MGI:5592328	lncRNA gene	predicted gene, 33169
3	pseudogene	9.656520	9.656915	positive	MGI_C57BL6J_5009992	Gm17806	NCBI_Gene:100286840,ENSEMBL:ENSMUSG00000103876	MGI:5009992	pseudogene	predicted gene, 17806
3	gene	9.687479	9.833679	negative	MGI_C57BL6J_2443160	Pag1	NCBI_Gene:94212,ENSEMBL:ENSMUSG00000027508	MGI:2443160	protein coding gene	phosphoprotein associated with glycosphingolipid microdomains 1
3	gene	9.757607	9.786142	positive	MGI_C57BL6J_3840131	Gm16337	ENSEMBL:ENSMUSG00000089794	MGI:3840131	lncRNA gene	predicted gene 16337
3	gene	9.829620	9.829728	negative	MGI_C57BL6J_5454563	Gm24786	ENSEMBL:ENSMUSG00000088004	MGI:5454563	rRNA gene	predicted gene, 24786
3	gene	9.880628	9.885288	negative	MGI_C57BL6J_5592432	Gm33273	NCBI_Gene:102636109	MGI:5592432	lncRNA gene	predicted gene, 33273
3	pseudogene	9.899430	9.902377	positive	MGI_C57BL6J_3779577	Gm6236	NCBI_Gene:100534370,ENSEMBL:ENSMUSG00000102795	MGI:3779577	pseudogene	predicted gene 6236
3	pseudogene	9.970503	9.972010	negative	MGI_C57BL6J_5010062	Gm17877	NCBI_Gene:100416024,ENSEMBL:ENSMUSG00000103698	MGI:5010062	pseudogene	predicted gene, 17877
3	gene	10.012548	10.016610	positive	MGI_C57BL6J_101790	Fabp5	NCBI_Gene:16592,ENSEMBL:ENSMUSG00000027533	MGI:101790	protein coding gene	fatty acid binding protein 5, epidermal
3	gene	10.022311	10.025539	negative	MGI_C57BL6J_5611563	Gm38335	ENSEMBL:ENSMUSG00000104000	MGI:5611563	lncRNA gene	predicted gene, 38335
3	gene	10.043293	10.064335	negative	MGI_C57BL6J_5592524	Gm33365	NCBI_Gene:102636246	MGI:5592524	lncRNA gene	predicted gene, 33365
3	gene	10.088110	10.092565	positive	MGI_C57BL6J_3641855	Gm9833	NCBI_Gene:100041480,ENSEMBL:ENSMUSG00000049230	MGI:3641855	protein coding gene	predicted gene 9833
3	pseudogene	10.089856	10.089955	negative	MGI_C57BL6J_5610536	Gm37308	ENSEMBL:ENSMUSG00000103045	MGI:5610536	pseudogene	predicted gene, 37308
3	gene	10.179851	10.183929	negative	MGI_C57BL6J_102667	Pmp2	NCBI_Gene:18857,ENSEMBL:ENSMUSG00000052468	MGI:102667	protein coding gene	peripheral myelin protein 2
3	gene	10.179852	10.197262	negative	MGI_C57BL6J_5610617	Gm37389	ENSEMBL:ENSMUSG00000103124	MGI:5610617	protein coding gene	predicted gene, 37389
3	gene	10.193621	10.197283	negative	MGI_C57BL6J_1194881	Fabp9	NCBI_Gene:21884,ENSEMBL:ENSMUSG00000027528	MGI:1194881	protein coding gene	fatty acid binding protein 9, testis
3	gene	10.204088	10.208602	negative	MGI_C57BL6J_88038	Fabp4	NCBI_Gene:11770,ENSEMBL:ENSMUSG00000062515	MGI:88038	protein coding gene	fatty acid binding protein 4, adipocyte
3	gene	10.220995	10.223433	negative	MGI_C57BL6J_1921296	4632432E15Rik	ENSEMBL:ENSMUSG00000102705	MGI:1921296	unclassified gene	RIKEN cDNA 4632432E15 gene
3	pseudogene	10.232180	10.232311	positive	MGI_C57BL6J_5610649	Gm37421	ENSEMBL:ENSMUSG00000104434	MGI:5610649	pseudogene	predicted gene, 37421
3	gene	10.241812	10.242308	positive	MGI_C57BL6J_1919533	1700029B24Rik	ENSEMBL:ENSMUSG00000102834	MGI:1919533	unclassified gene	RIKEN cDNA 1700029B24 gene
3	gene	10.244209	10.301528	negative	MGI_C57BL6J_1922747	Fabp12	NCBI_Gene:75497,ENSEMBL:ENSMUSG00000027530	MGI:1922747	protein coding gene	fatty acid binding protein 12
3	gene	10.296945	10.305120	positive	MGI_C57BL6J_1925848	A930014E01Rik	NCBI_Gene:102636393,ENSEMBL:ENSMUSG00000104092	MGI:1925848	lncRNA gene	RIKEN cDNA A930014E01 gene
3	pseudogene	10.309048	10.309226	positive	MGI_C57BL6J_5611592	Gm38364	ENSEMBL:ENSMUSG00000103592	MGI:5611592	pseudogene	predicted gene, 38364
3	gene	10.311956	10.331439	negative	MGI_C57BL6J_1933158	Impa1	NCBI_Gene:55980,ENSEMBL:ENSMUSG00000027531	MGI:1933158	protein coding gene	inositol (myo)-1(or 4)-monophosphatase 1
3	gene	10.321712	10.335681	negative	MGI_C57BL6J_5611531	Gm38303	ENSEMBL:ENSMUSG00000103392	MGI:5611531	protein coding gene	predicted gene, 38303
3	gene	10.331734	10.335656	negative	MGI_C57BL6J_2685251	Slc10a5	NCBI_Gene:241877,ENSEMBL:ENSMUSG00000058921	MGI:2685251	protein coding gene	solute carrier family 10 (sodium/bile acid cotransporter family), member 5
3	gene	10.339953	10.351338	negative	MGI_C57BL6J_1913611	Zfand1	NCBI_Gene:66361,ENSEMBL:ENSMUSG00000039795	MGI:1913611	protein coding gene	zinc finger, AN1-type domain 1
3	gene	10.366907	10.428856	positive	MGI_C57BL6J_1913621	Chmp4c	NCBI_Gene:66371,ENSEMBL:ENSMUSG00000027536	MGI:1913621	protein coding gene	charged multivesicular body protein 4C
3	gene	10.417817	10.440130	negative	MGI_C57BL6J_1921968	Snx16	NCBI_Gene:74718,ENSEMBL:ENSMUSG00000027534	MGI:1921968	protein coding gene	sorting nexin 16
3	gene	10.426594	10.428866	positive	MGI_C57BL6J_2679522	5430403G19Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 5430403G19 gene
3	gene	10.430764	10.434207	negative	MGI_C57BL6J_2445184	A630040H13Rik	NA	NA	unclassified gene	RIKEN cDNA A630040H13 gene
3	gene	10.646316	10.648102	positive	MGI_C57BL6J_5611059	Gm37831	ENSEMBL:ENSMUSG00000104451	MGI:5611059	unclassified gene	predicted gene, 37831
3	pseudogene	10.753893	10.754428	negative	MGI_C57BL6J_5010877	Gm18692	NCBI_Gene:100417569,ENSEMBL:ENSMUSG00000104185	MGI:5010877	pseudogene	predicted gene, 18692
3	gene	10.772919	10.774899	negative	MGI_C57BL6J_5610472	Gm37244	ENSEMBL:ENSMUSG00000102470	MGI:5610472	unclassified gene	predicted gene, 37244
3	gene	10.848895	10.857537	positive	MGI_C57BL6J_5592710	Gm33551	NCBI_Gene:102636504	MGI:5592710	lncRNA gene	predicted gene, 33551
3	gene	10.975469	10.975586	negative	MGI_C57BL6J_5452572	Gm22795	ENSEMBL:ENSMUSG00000087858	MGI:5452572	snoRNA gene	predicted gene, 22795
3	pseudogene	11.008846	11.009603	negative	MGI_C57BL6J_5434986	Gm21631	NCBI_Gene:100862302,ENSEMBL:ENSMUSG00000103323	MGI:5434986	pseudogene	predicted gene, 21631
3	pseudogene	11.013514	11.015199	negative	MGI_C57BL6J_3643310	Gm8910	NCBI_Gene:667978	MGI:3643310	pseudogene	predicted gene 8910
3	pseudogene	11.044170	11.044358	negative	MGI_C57BL6J_5611060	Gm37832	ENSEMBL:ENSMUSG00000081537	MGI:5611060	pseudogene	predicted gene, 37832
3	gene	11.154337	11.154437	positive	MGI_C57BL6J_5452324	Gm22547	ENSEMBL:ENSMUSG00000095289	MGI:5452324	miRNA gene	predicted gene, 22547
3	pseudogene	11.658301	11.659519	negative	MGI_C57BL6J_3643562	Gm8919	NCBI_Gene:667999,ENSEMBL:ENSMUSG00000098085	MGI:3643562	pseudogene	predicted gene 8919
3	gene	11.823229	11.844359	negative	MGI_C57BL6J_3642274	Gm10745	NCBI_Gene:100038545,ENSEMBL:ENSMUSG00000104015	MGI:3642274	lncRNA gene	predicted gene 10745
3	pseudogene	12.384243	12.389663	negative	MGI_C57BL6J_5611224	Gm37996	NCBI_Gene:108168848,ENSEMBL:ENSMUSG00000103339	MGI:5611224	pseudogene	predicted gene, 37996
3	pseudogene	12.521465	12.522489	positive	MGI_C57BL6J_5010616	Gm18431	NCBI_Gene:100417159	MGI:5010616	pseudogene	predicted gene, 18431
3	pseudogene	12.631258	12.632025	positive	MGI_C57BL6J_3780596	Gm2429	NCBI_Gene:100039798,ENSEMBL:ENSMUSG00000104177	MGI:3780596	pseudogene	predicted gene 2429
3	pseudogene	12.829051	12.831568	positive	MGI_C57BL6J_5010417	Gm18232	NCBI_Gene:100416756	MGI:5010417	pseudogene	predicted gene, 18232
3	pseudogene	12.855810	12.858633	positive	MGI_C57BL6J_3643401	Gm8935	NCBI_Gene:668033,ENSEMBL:ENSMUSG00000095661	MGI:3643401	pseudogene	predicted pseudogene 8935
3	pseudogene	12.892450	12.893414	negative	MGI_C57BL6J_3643399	Gm8939	NCBI_Gene:668037,ENSEMBL:ENSMUSG00000103950	MGI:3643399	pseudogene	predicted gene 8939
3	pseudogene	12.975359	12.975701	positive	MGI_C57BL6J_5611545	Gm38317	ENSEMBL:ENSMUSG00000103735	MGI:5611545	pseudogene	predicted gene, 38317
3	gene	13.288197	13.291891	positive	MGI_C57BL6J_5611041	Gm37813	ENSEMBL:ENSMUSG00000102815	MGI:5611041	unclassified gene	predicted gene, 37813
3	pseudogene	13.429558	13.429958	positive	MGI_C57BL6J_5610425	Gm37197	ENSEMBL:ENSMUSG00000104065	MGI:5610425	pseudogene	predicted gene, 37197
3	gene	13.470439	13.474596	negative	MGI_C57BL6J_3780631	Gm2464	ENSEMBL:ENSMUSG00000097338,ENSEMBL:ENSMUSG00000102215	MGI:3780631	lncRNA gene	predicted gene 2464
3	gene	13.471655	14.182287	positive	MGI_C57BL6J_1924147	Ralyl	NCBI_Gene:76897,ENSEMBL:ENSMUSG00000039717	MGI:1924147	protein coding gene	RALY RNA binding protein-like
3	gene	13.597139	13.652865	negative	MGI_C57BL6J_1922453	4930539N22Rik	NCBI_Gene:75203	MGI:1922453	lncRNA gene	RIKEN cDNA 4930539N22 gene
3	pseudogene	13.669509	13.670145	negative	MGI_C57BL6J_5610392	Gm37164	ENSEMBL:ENSMUSG00000104514	MGI:5610392	pseudogene	predicted gene, 37164
3	pseudogene	13.749938	13.750512	positive	MGI_C57BL6J_3780641	Gm2474	NCBI_Gene:100039882,ENSEMBL:ENSMUSG00000103856	MGI:3780641	pseudogene	predicted gene 2474
3	pseudogene	13.838875	13.840343	negative	MGI_C57BL6J_5011299	Gm19114	NCBI_Gene:100418280,ENSEMBL:ENSMUSG00000102891	MGI:5011299	pseudogene	predicted gene, 19114
3	gene	13.845686	13.845980	positive	MGI_C57BL6J_5455758	Gm25981	ENSEMBL:ENSMUSG00000088546	MGI:5455758	unclassified non-coding RNA gene	predicted gene, 25981
3	gene	13.847735	13.850864	positive	MGI_C57BL6J_2444502	C230073O14Rik	NA	NA	unclassified gene	RIKEN cDNA C230073O14 gene
3	gene	13.914161	13.934435	negative	MGI_C57BL6J_5624883	Gm41998	NCBI_Gene:105246756	MGI:5624883	lncRNA gene	predicted gene, 41998
3	gene	14.029482	14.029762	negative	MGI_C57BL6J_5451803	Gm22026	ENSEMBL:ENSMUSG00000084684	MGI:5451803	unclassified non-coding RNA gene	predicted gene, 22026
3	pseudogene	14.098042	14.099016	positive	MGI_C57BL6J_5010846	Gm18661	NCBI_Gene:100417513	MGI:5010846	pseudogene	predicted gene, 18661
3	pseudogene	14.150147	14.150785	positive	MGI_C57BL6J_5011252	Gm19067	NCBI_Gene:100418194	MGI:5011252	pseudogene	predicted gene, 19067
3	pseudogene	14.163685	14.164632	negative	MGI_C57BL6J_5010844	Gm18659	NCBI_Gene:100417511	MGI:5010844	pseudogene	predicted gene, 18659
3	gene	14.267315	14.267439	negative	MGI_C57BL6J_5452889	Gm23112	ENSEMBL:ENSMUSG00000089231	MGI:5452889	snoRNA gene	predicted gene, 23112
3	pseudogene	14.330227	14.330391	positive	MGI_C57BL6J_5611539	Gm38311	ENSEMBL:ENSMUSG00000102707	MGI:5611539	pseudogene	predicted gene, 38311
3	pseudogene	14.363117	14.377587	positive	MGI_C57BL6J_3648364	Gm6300	NCBI_Gene:622229,ENSEMBL:ENSMUSG00000104375	MGI:3648364	pseudogene	predicted gene 6300
3	pseudogene	14.383901	14.393393	negative	MGI_C57BL6J_5610586	Gm37358	NCBI_Gene:108168849,ENSEMBL:ENSMUSG00000103626	MGI:5610586	pseudogene	predicted gene, 37358
3	pseudogene	14.428283	14.435027	negative	MGI_C57BL6J_3645918	Gm8955	NCBI_Gene:668062,ENSEMBL:ENSMUSG00000098036	MGI:3645918	pseudogene	predicted gene 8955
3	gene	14.480691	14.505830	positive	MGI_C57BL6J_2156159	Slc7a12	NCBI_Gene:140918,ENSEMBL:ENSMUSG00000039710	MGI:2156159	protein coding gene	solute carrier family 7 (cationic amino acid transporter, y+ system), member 12
3	pseudogene	14.510888	14.512113	negative	MGI_C57BL6J_3779827	Gm8957	NCBI_Gene:668068,ENSEMBL:ENSMUSG00000098083	MGI:3779827	pseudogene	predicted gene 8957
3	gene	14.533788	14.572658	positive	MGI_C57BL6J_1918960	Lrrcc1	NCBI_Gene:71710,ENSEMBL:ENSMUSG00000027550	MGI:1918960	protein coding gene	leucine rich repeat and coiled-coil domain containing 1
3	pseudogene	14.564402	14.564681	positive	MGI_C57BL6J_4937946	Gm17119	ENSEMBL:ENSMUSG00000090300	MGI:4937946	pseudogene	predicted gene 17119
3	gene	14.578602	14.606309	positive	MGI_C57BL6J_105091	E2f5	NCBI_Gene:13559,ENSEMBL:ENSMUSG00000027552	MGI:105091	protein coding gene	E2F transcription factor 5
3	gene	14.606284	14.611285	negative	MGI_C57BL6J_1916376	Rbis	NCBI_Gene:69126,ENSEMBL:ENSMUSG00000078784	MGI:1916376	protein coding gene	ribosomal biogenesis factor
3	pseudogene	14.628952	14.629240	negative	MGI_C57BL6J_5611379	Gm38151	ENSEMBL:ENSMUSG00000104249	MGI:5611379	pseudogene	predicted gene, 38151
3	gene	14.641727	14.663002	positive	MGI_C57BL6J_1931322	Car13	NCBI_Gene:71934,ENSEMBL:ENSMUSG00000027555	MGI:1931322	protein coding gene	carbonic anhydrase 13
3	pseudogene	14.722415	14.729626	positive	MGI_C57BL6J_3645250	Gm5843	NCBI_Gene:545507,ENSEMBL:ENSMUSG00000084092	MGI:3645250	pseudogene	predicted gene 5843
3	gene	14.766214	14.808368	negative	MGI_C57BL6J_88268	Car1	NCBI_Gene:12346,ENSEMBL:ENSMUSG00000027556	MGI:88268	protein coding gene	carbonic anhydrase 1
3	pseudogene	14.802215	14.802632	negative	MGI_C57BL6J_3645963	Gm16399	NCBI_Gene:100041785,ENSEMBL:ENSMUSG00000097790	MGI:3645963	pseudogene	predicted pseudogene 16399
3	gene	14.825509	14.864243	negative	MGI_C57BL6J_5624884	Gm41999	NCBI_Gene:105246757	MGI:5624884	lncRNA gene	predicted gene, 41999
3	gene	14.863512	14.872523	positive	MGI_C57BL6J_88270	Car3	NCBI_Gene:12350,ENSEMBL:ENSMUSG00000027559	MGI:88270	protein coding gene	carbonic anhydrase 3
3	gene	14.886273	14.900770	positive	MGI_C57BL6J_88269	Car2	NCBI_Gene:12349,ENSEMBL:ENSMUSG00000027562	MGI:88269	protein coding gene	carbonic anhydrase 2
3	gene	14.971201	15.002727	positive	MGI_C57BL6J_1924377	A930001A20Rik	NCBI_Gene:77127,ENSEMBL:ENSMUSG00000098008	MGI:1924377	lncRNA gene	RIKEN cDNA A930001A20 gene
3	pseudogene	14.973368	14.974570	negative	MGI_C57BL6J_3647002	Gm7132	NCBI_Gene:634323,ENSEMBL:ENSMUSG00000098186	MGI:3647002	pseudogene	predicted gene 7132
3	gene	15.055968	15.061831	positive	MGI_C57BL6J_5624885	Gm42000	NCBI_Gene:105246758	MGI:5624885	lncRNA gene	predicted gene, 42000
3	gene	15.153012	15.171442	negative	MGI_C57BL6J_5592978	Gm33819	NCBI_Gene:102636866,ENSEMBL:ENSMUSG00000103912	MGI:5592978	lncRNA gene	predicted gene, 33819
3	gene	15.295103	15.332310	negative	MGI_C57BL6J_3780136	Gm9733	NCBI_Gene:751864,ENSEMBL:ENSMUSG00000078783	MGI:3780136	protein coding gene	predicted gene 9733
3	gene	15.371653	15.426522	negative	MGI_C57BL6J_2444824	Sirpb1a	NCBI_Gene:320832,ENSEMBL:ENSMUSG00000095788	MGI:2444824	protein coding gene	signal-regulatory protein beta 1A
3	gene	15.495751	15.575067	negative	MGI_C57BL6J_3779828	Sirpb1b	NCBI_Gene:668101,ENSEMBL:ENSMUSG00000095028	MGI:3779828	protein coding gene	signal-regulatory protein beta 1B
3	pseudogene	15.514358	15.515637	positive	MGI_C57BL6J_5434369	Gm21014	NCBI_Gene:100534286	MGI:5434369	pseudogene	predicted gene, 21014
3	gene	15.547479	15.548599	positive	MGI_C57BL6J_5610696	Gm37468	ENSEMBL:ENSMUSG00000102155	MGI:5610696	lncRNA gene	predicted gene, 37468
3	gene	15.795145	15.848530	negative	MGI_C57BL6J_3807521	Sirpb1c	NCBI_Gene:100038947,ENSEMBL:ENSMUSG00000074677	MGI:3807521	protein coding gene	signal-regulatory protein beta 1C
3	pseudogene	15.891327	15.892583	negative	MGI_C57BL6J_3648569	Gm6321	NCBI_Gene:622425,ENSEMBL:ENSMUSG00000103688	MGI:3648569	pseudogene	predicted gene 6321
3	pseudogene	15.941772	15.942833	negative	MGI_C57BL6J_3648493	Gm7343	NCBI_Gene:664795,ENSEMBL:ENSMUSG00000103769	MGI:3648493	pseudogene	predicted gene 7343
3	gene	15.946870	16.006437	negative	MGI_C57BL6J_3779469	Gm5150	NCBI_Gene:381484,ENSEMBL:ENSMUSG00000078780	MGI:3779469	protein coding gene	predicted gene 5150
3	gene	16.013818	16.013927	positive	MGI_C57BL6J_5454471	Gm24694	ENSEMBL:ENSMUSG00000094598	MGI:5454471	miRNA gene	predicted gene, 24694
3	pseudogene	16.078150	16.078324	negative	MGI_C57BL6J_5611064	Gm37836	ENSEMBL:ENSMUSG00000103535	MGI:5611064	pseudogene	predicted gene, 37836
3	gene	16.115615	16.115943	negative	MGI_C57BL6J_5455640	Gm25863	ENSEMBL:ENSMUSG00000088874	MGI:5455640	ribozyme gene	predicted gene, 25863
3	gene	16.183141	16.217037	positive	MGI_C57BL6J_1918850	Ythdf3	NCBI_Gene:229096,ENSEMBL:ENSMUSG00000047213	MGI:1918850	protein coding gene	YTH N6-methyladenosine RNA binding protein 3
3	gene	16.210483	16.211928	positive	MGI_C57BL6J_1923346	5830468K08Rik	NA	NA	unclassified gene	RIKEN cDNA 5830468K08 gene
3	gene	16.817078	16.847955	positive	MGI_C57BL6J_5589382	Gm30223	NCBI_Gene:102632048	MGI:5589382	lncRNA gene	predicted gene, 30223
3	gene	16.823249	16.823312	negative	MGI_C57BL6J_5456262	Gm26485	ENSEMBL:ENSMUSG00000088644	MGI:5456262	snRNA gene	predicted gene, 26485
3	gene	16.862931	16.902974	positive	MGI_C57BL6J_5625069	Gm42184	NCBI_Gene:105246998	MGI:5625069	lncRNA gene	predicted gene, 42184
3	gene	17.002671	17.069484	negative	MGI_C57BL6J_5625070	Gm42185	NCBI_Gene:105246999	MGI:5625070	lncRNA gene	predicted gene, 42185
3	gene	17.117133	17.139762	negative	MGI_C57BL6J_5625071	Gm42186	NCBI_Gene:105247001	MGI:5625071	lncRNA gene	predicted gene, 42186
3	pseudogene	17.230436	17.231051	negative	MGI_C57BL6J_3643834	Gm5283	NCBI_Gene:383936,ENSEMBL:ENSMUSG00000095827	MGI:3643834	pseudogene	predicted gene 5283
3	gene	17.251301	17.251444	negative	MGI_C57BL6J_5454740	Gm24963	ENSEMBL:ENSMUSG00000088541	MGI:5454740	snoRNA gene	predicted gene, 24963
3	pseudogene	17.269422	17.271236	positive	MGI_C57BL6J_3643969	Gm6350	NCBI_Gene:622737,ENSEMBL:ENSMUSG00000103351	MGI:3643969	pseudogene	predicted gene 6350
3	pseudogene	17.283151	17.284141	positive	MGI_C57BL6J_5011122	Gm18937	NCBI_Gene:100417989	MGI:5011122	pseudogene	predicted gene, 18937
3	gene	17.321506	17.785980	negative	MGI_C57BL6J_5589499	Gm30340	NCBI_Gene:102632200,ENSEMBL:ENSMUSG00000104411	MGI:5589499	lncRNA gene	predicted gene, 30340
3	pseudogene	17.395820	17.397734	positive	MGI_C57BL6J_5011879	Gm19694	NCBI_Gene:108168858,ENSEMBL:ENSMUSG00000102646	MGI:5011879	pseudogene	predicted gene, 19694
3	pseudogene	17.670688	17.671027	positive	MGI_C57BL6J_5611382	Gm38154	ENSEMBL:ENSMUSG00000104242	MGI:5611382	pseudogene	predicted gene, 38154
3	gene	17.783514	17.786898	negative	MGI_C57BL6J_3642301	Gm10742	NA	NA	unclassified gene	predicted gene 10742
3	gene	17.789921	17.808970	positive	MGI_C57BL6J_1917691	Mir124-2hg	NCBI_Gene:70441,ENSEMBL:ENSMUSG00000100252	MGI:1917691	lncRNA gene	Mir124-2 host gene (non-protein coding)
3	gene	17.795662	17.795770	positive	MGI_C57BL6J_3618700	Mir124a-2	miRBase:MI0000717,NCBI_Gene:723950,ENSEMBL:ENSMUSG00000093073	MGI:3618700	miRNA gene	microRNA 124a-2
3	gene	17.803621	17.803747	negative	MGI_C57BL6J_5453218	Gm23441	ENSEMBL:ENSMUSG00000087893	MGI:5453218	snRNA gene	predicted gene, 23441
3	gene	17.818728	17.853402	positive	MGI_C57BL6J_5625072	Gm42187	NCBI_Gene:105247002	MGI:5625072	lncRNA gene	predicted gene, 42187
3	gene	17.829276	17.831396	positive	MGI_C57BL6J_1921828	4833408G04Rik	NA	NA	unclassified gene	RIKEN cDNA 4833408G04 gene
3	pseudogene	17.923706	17.924626	positive	MGI_C57BL6J_5011360	Gm19175	NCBI_Gene:100418385,ENSEMBL:ENSMUSG00000105262	MGI:5011360	pseudogene	predicted gene, 19175
3	gene	17.948410	17.948959	positive	MGI_C57BL6J_1922689	Cypt12	NCBI_Gene:75439,ENSEMBL:ENSMUSG00000027564	MGI:1922689	protein coding gene	cysteine-rich perinuclear theca 12
3	pseudogene	18.008748	18.011501	positive	MGI_C57BL6J_3645252	Gm5844	NCBI_Gene:545508,ENSEMBL:ENSMUSG00000082896	MGI:3645252	pseudogene	predicted gene 5844
3	gene	18.054174	18.057517	positive	MGI_C57BL6J_1930001	Bhlhe22	NCBI_Gene:59058,ENSEMBL:ENSMUSG00000025128	MGI:1930001	protein coding gene	basic helix-loop-helix family, member e22
3	gene	18.069326	18.069392	positive	MGI_C57BL6J_5453503	Gm23726	ENSEMBL:ENSMUSG00000094983	MGI:5453503	miRNA gene	predicted gene, 23726
3	gene	18.071944	18.243890	negative	MGI_C57BL6J_104978	Cyp7b1	NCBI_Gene:13123,ENSEMBL:ENSMUSG00000039519	MGI:104978	protein coding gene	cytochrome P450, family 7, subfamily b, polypeptide 1
3	gene	18.177462	18.177625	negative	MGI_C57BL6J_5453463	Gm23686	ENSEMBL:ENSMUSG00000096391	MGI:5453463	snRNA gene	predicted gene, 23686
3	gene	18.299310	18.304139	positive	MGI_C57BL6J_5663971	Gm43834	ENSEMBL:ENSMUSG00000104801	MGI:5663971	unclassified gene	predicted gene 43834
3	gene	18.341667	18.461341	negative	MGI_C57BL6J_5589826	Gm30667	NCBI_Gene:102632645,ENSEMBL:ENSMUSG00000102886	MGI:5589826	lncRNA gene	predicted gene, 30667
3	gene	18.468285	18.480477	negative	MGI_C57BL6J_1921209	4930433B08Rik	NCBI_Gene:73959,ENSEMBL:ENSMUSG00000102699	MGI:1921209	lncRNA gene	RIKEN cDNA 4930433B08 gene
3	pseudogene	18.494617	18.534289	positive	MGI_C57BL6J_3644758	Gm6369	NCBI_Gene:622921,ENSEMBL:ENSMUSG00000040217	MGI:3644758	pseudogene	predicted gene 6369
3	pseudogene	18.564493	18.566138	positive	MGI_C57BL6J_97558	Pgk1-ps3	NCBI_Gene:100416868,ENSEMBL:ENSMUSG00000105280	MGI:97558	pseudogene	phosphoglycerate kinase 1, pseudogene 3
3	gene	18.609475	18.617380	negative	MGI_C57BL6J_5589882	Gm30723	NCBI_Gene:102632727	MGI:5589882	lncRNA gene	predicted gene, 30723
3	pseudogene	18.609808	18.610831	negative	MGI_C57BL6J_5610545	Gm37317	ENSEMBL:ENSMUSG00000104091	MGI:5610545	pseudogene	predicted gene, 37317
3	gene	18.619549	18.643095	negative	MGI_C57BL6J_5589948	Gm30789	NCBI_Gene:102632812	MGI:5589948	lncRNA gene	predicted gene, 30789
3	gene	18.622162	18.626141	positive	MGI_C57BL6J_5663081	Gm42944	ENSEMBL:ENSMUSG00000104918	MGI:5663081	unclassified gene	predicted gene 42944
3	pseudogene	18.753076	18.753404	positive	MGI_C57BL6J_5589500	Gm30341	NCBI_Gene:102632201,ENSEMBL:ENSMUSG00000103264	MGI:5589500	pseudogene	predicted gene, 30341
3	gene	19.131402	19.163090	negative	MGI_C57BL6J_1921502	Armc1	NCBI_Gene:74252,ENSEMBL:ENSMUSG00000027599	MGI:1921502	protein coding gene	armadillo repeat containing 1
3	gene	19.143188	19.143899	negative	MGI_C57BL6J_5611207	Gm37979	ENSEMBL:ENSMUSG00000103135	MGI:5611207	unclassified gene	predicted gene, 37979
3	gene	19.187314	19.220817	positive	MGI_C57BL6J_1914722	Mtfr1	NCBI_Gene:67472,ENSEMBL:ENSMUSG00000027601	MGI:1914722	protein coding gene	mitochondrial fission regulator 1
3	gene	19.223108	19.311322	negative	MGI_C57BL6J_1202402	Pde7a	NCBI_Gene:18583,ENSEMBL:ENSMUSG00000069094	MGI:1202402	protein coding gene	phosphodiesterase 7A
3	gene	19.223115	19.223693	negative	MGI_C57BL6J_1921035	4930431H11Rik	NA	NA	unclassified gene	RIKEN cDNA 4930431H11 gene
3	gene	19.227780	19.240987	positive	MGI_C57BL6J_3801946	Gm16093	ENSEMBL:ENSMUSG00000087108	MGI:3801946	lncRNA gene	predicted gene 16093
3	gene	19.311660	19.313735	positive	MGI_C57BL6J_1920375	3110037C07Rik	NA	NA	unclassified gene	RIKEN cDNA 3110037C07 gene
3	gene	19.330773	19.331084	positive	MGI_C57BL6J_5452059	Gm22282	ENSEMBL:ENSMUSG00000089149	MGI:5452059	unclassified non-coding RNA gene	predicted gene, 22282
3	gene	19.374179	19.387634	positive	MGI_C57BL6J_5625073	Gm42188	NCBI_Gene:105247004	MGI:5625073	lncRNA gene	predicted gene, 42188
3	gene	19.508591	19.610862	positive	MGI_C57BL6J_1913576	Dnajc5b	NCBI_Gene:66326,ENSEMBL:ENSMUSG00000027606	MGI:1913576	protein coding gene	DnaJ heat shock protein family (Hsp40) member C5 beta
3	gene	19.560253	19.560416	positive	MGI_C57BL6J_5453107	Gm23330	ENSEMBL:ENSMUSG00000096211	MGI:5453107	snRNA gene	predicted gene, 23330
3	pseudogene	19.584791	19.585542	positive	MGI_C57BL6J_3646012	Gm6141	NCBI_Gene:620290,ENSEMBL:ENSMUSG00000084339	MGI:3646012	pseudogene	predicted pseudogene 6141
3	gene	19.610368	19.629477	negative	MGI_C57BL6J_1920674	1700064H15Rik	NCBI_Gene:102633032,ENSEMBL:ENSMUSG00000082766	MGI:1920674	protein coding gene	RIKEN cDNA 1700064H15 gene
3	gene	19.627959	19.628031	negative	MGI_C57BL6J_4413716	n-TRacg3	NCBI_Gene:102467637	MGI:4413716	tRNA gene	nuclear encoded tRNA arginine 3 (anticodon ACG)
3	gene	19.628355	19.628447	positive	MGI_C57BL6J_4414074	n-TYgta1	NCBI_Gene:102467442	MGI:4414074	tRNA gene	nuclear encoded tRNA tyrosine 1 (anticodon GTA)
3	gene	19.628782	19.628870	positive	MGI_C57BL6J_4414075	n-TYgta2	NCBI_Gene:102467395	MGI:4414075	tRNA gene	nuclear encoded tRNA tyrosine 2 (anticodon GTA)
3	gene	19.628995	19.629067	positive	MGI_C57BL6J_4413687	n-TAagc14	NCBI_Gene:102467233	MGI:4413687	tRNA gene	nuclear encoded tRNA alanine 14 (anticodon AGC)
3	gene	19.644343	19.692421	positive	MGI_C57BL6J_3036269	Trim55	NCBI_Gene:381485,ENSEMBL:ENSMUSG00000060913	MGI:3036269	protein coding gene	tripartite motif-containing 55
3	gene	19.685971	19.686568	positive	MGI_C57BL6J_3642300	BC002189	ENSEMBL:ENSMUSG00000104465	MGI:3642300	lncRNA gene	cDNA sequence BC002189
3	gene	19.693401	19.695396	negative	MGI_C57BL6J_88496	Crh	NCBI_Gene:12918,ENSEMBL:ENSMUSG00000049796	MGI:88496	protein coding gene	corticotropin releasing hormone
3	gene	19.694486	19.707354	positive	MGI_C57BL6J_5625074	Gm42189	NCBI_Gene:105247005	MGI:5625074	lncRNA gene	predicted gene, 42189
3	pseudogene	19.708253	19.709320	negative	MGI_C57BL6J_5011049	Gm18864	NCBI_Gene:100417853,ENSEMBL:ENSMUSG00000102261	MGI:5011049	pseudogene	predicted gene, 18864

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	20.30841	20.30992	positive	MGI_C57BL6J_5663662	Gm43525	ENSEMBL:ENSMUSG00000105208	MGI:5663662	lncRNA gene	predicted gene 43525
3	gene	20.31447	20.36718	negative	MGI_C57BL6J_87965	Agtr1b	NCBI_Gene:11608,ENSEMBL:ENSMUSG00000054988	MGI:87965	protein coding gene	angiotensin II receptor, type 1b
3	pseudogene	20.39101	20.39198	negative	MGI_C57BL6J_5010611	Gm18426	NCBI_Gene:100417153,ENSEMBL:ENSMUSG00000103573	MGI:5010611	pseudogene	predicted gene, 18426
3	gene	20.40250	20.50621	negative	MGI_C57BL6J_5590625	Gm31466	NCBI_Gene:108168860,ENSEMBL:ENSMUSG00000102636	MGI:5590625	lncRNA gene	predicted gene, 31466
3	gene	20.40467	20.40491	positive	MGI_C57BL6J_5662731	Gm42594	ENSEMBL:ENSMUSG00000106442	MGI:5662731	unclassified gene	predicted gene 42594
3	pseudogene	20.78247	20.78407	negative	MGI_C57BL6J_5010676	Gm18491	NCBI_Gene:100417265,ENSEMBL:ENSMUSG00000103460	MGI:5010676	pseudogene	predicted gene, 18491
3	pseudogene	20.78794	20.78815	positive	MGI_C57BL6J_5611551	Gm38323	ENSEMBL:ENSMUSG00000102986	MGI:5611551	pseudogene	predicted gene, 38323
3	pseudogene	20.80448	20.80609	positive	MGI_C57BL6J_5010678	Gm18493	NCBI_Gene:100417268,ENSEMBL:ENSMUSG00000103533	MGI:5010678	pseudogene	predicted gene, 18493
3	gene	20.81639	20.82236	negative	MGI_C57BL6J_5590711	Gm31552	NCBI_Gene:102633820	MGI:5590711	lncRNA gene	predicted gene, 31552
3	gene	20.81962	20.82369	positive	MGI_C57BL6J_5610708	Gm37480	ENSEMBL:ENSMUSG00000102807	MGI:5610708	unclassified gene	predicted gene, 37480
3	pseudogene	21.04945	21.05053	positive	MGI_C57BL6J_3647006	Gm7488	NCBI_Gene:665094,ENSEMBL:ENSMUSG00000039617	MGI:3647006	pseudogene	predicted gene 7488
3	pseudogene	21.11358	21.11400	negative	MGI_C57BL6J_5663297	Gm43160	ENSEMBL:ENSMUSG00000106051	MGI:5663297	pseudogene	predicted gene 43160
3	gene	21.26837	21.26909	negative	MGI_C57BL6J_5579843	Gm29137	ENSEMBL:ENSMUSG00000101897	MGI:5579843	lncRNA gene	predicted gene 29137
3	gene	21.42179	21.48966	negative	MGI_C57BL6J_5590769	Gm31610	NCBI_Gene:102633894	MGI:5590769	lncRNA gene	predicted gene, 31610
3	pseudogene	21.60381	21.60551	positive	MGI_C57BL6J_5663812	Gm43675	ENSEMBL:ENSMUSG00000106085	MGI:5663812	pseudogene	predicted gene 43675
3	pseudogene	21.64839	21.64918	positive	MGI_C57BL6J_5010120	Gm17935	NCBI_Gene:100416137,ENSEMBL:ENSMUSG00000106460	MGI:5010120	pseudogene	predicted gene, 17935
3	gene	21.70282	21.71246	positive	MGI_C57BL6J_5590852	Gm31693	NCBI_Gene:102634003,ENSEMBL:ENSMUSG00000105440	MGI:5590852	lncRNA gene	predicted gene, 31693
3	gene	21.75353	21.80080	negative	MGI_C57BL6J_2442162	7530428D23Rik	NCBI_Gene:319506,ENSEMBL:ENSMUSG00000103441	MGI:2442162	lncRNA gene	RIKEN cDNA 7530428D23 gene
3	gene	21.86417	21.96435	negative	MGI_C57BL6J_5590972	Gm31813	NCBI_Gene:102634161	MGI:5590972	lncRNA gene	predicted gene, 31813
3	gene	21.99768	21.99847	negative	MGI_C57BL6J_5663811	Gm43674	ENSEMBL:ENSMUSG00000106321	MGI:5663811	lncRNA gene	predicted gene 43674
3	pseudogene	22.02120	22.02163	positive	MGI_C57BL6J_5663808	Gm43671	ENSEMBL:ENSMUSG00000106527	MGI:5663808	pseudogene	predicted gene 43671

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	22.07659	22.21659	positive	MGI_C57BL6J_2441730	Tbl1xr1	NCBI_Gene:81004,ENSEMBL:ENSMUSG00000027630	MGI:2441730	protein coding gene	transducin (beta)-like 1X-linked receptor 1
3	gene	22.25137	22.25166	positive	MGI_C57BL6J_105104	Rprl2	NCBI_Gene:19784,ENSEMBL:ENSMUSG00000087775	MGI:105104	RNase P RNA gene	ribonuclease P RNA-like 2
3	gene	22.28508	22.29783	negative	MGI_C57BL6J_5611552	Gm38324	ENSEMBL:ENSMUSG00000102987	MGI:5611552	lncRNA gene	predicted gene, 38324
3	pseudogene	22.34885	22.34961	negative	MGI_C57BL6J_5610864	Gm37636	NCBI_Gene:108168850,ENSEMBL:ENSMUSG00000102866	MGI:5610864	pseudogene	predicted gene, 37636
3	gene	22.40992	22.41005	negative	MGI_C57BL6J_5456131	Gm26354	ENSEMBL:ENSMUSG00000088846	MGI:5456131	snoRNA gene	predicted gene, 26354
3	pseudogene	22.52501	22.52624	positive	MGI_C57BL6J_3780056	Spin3-ps	NCBI_Gene:675593,ENSEMBL:ENSMUSG00000103801	MGI:3780056	pseudogene	spindlin family, member 3, pseudogene
3	gene	22.81221	22.81246	positive	MGI_C57BL6J_5611117	Gm37889	ENSEMBL:ENSMUSG00000102233	MGI:5611117	unclassified gene	predicted gene, 37889
3	pseudogene	23.07242	23.07492	positive	MGI_C57BL6J_5610211	Gm36983	ENSEMBL:ENSMUSG00000103275	MGI:5610211	pseudogene	predicted gene, 36983
3	gene	23.08598	23.08895	positive	MGI_C57BL6J_5610249	Gm37021	ENSEMBL:ENSMUSG00000103607	MGI:5610249	lncRNA gene	predicted gene, 37021
3	pseudogene	23.37494	23.37532	negative	MGI_C57BL6J_5610720	Gm37492	ENSEMBL:ENSMUSG00000102214	MGI:5610720	pseudogene	predicted gene, 37492
3	gene	23.46105	23.52140	positive	MGI_C57BL6J_1924114	4930412E21Rik	NCBI_Gene:100039548,ENSEMBL:ENSMUSG00000102203	MGI:1924114	lncRNA gene	RIKEN cDNA 4930412E21 gene
3	gene	23.79810	25.14426	negative	MGI_C57BL6J_2685867	Naaladl2	NCBI_Gene:635702,ENSEMBL:ENSMUSG00000102758	MGI:2685867	protein coding gene	N-acetylated alpha-linked acidic dipeptidase-like 2
3	pseudogene	23.93096	23.93200	positive	MGI_C57BL6J_5011009	Gm18824	NCBI_Gene:100417784	MGI:5011009	pseudogene	predicted gene, 18824
3	gene	23.94002	23.94593	positive	MGI_C57BL6J_5625076	Gm42191	NCBI_Gene:105247007	MGI:5625076	lncRNA gene	predicted gene, 42191
3	gene	24.16303	24.16311	negative	MGI_C57BL6J_4413931	n-TLcag1	NCBI_Gene:102467553	MGI:4413931	tRNA gene	nuclear encoded tRNA leucine 1 (anticodon CAG)
3	pseudogene	24.33304	24.33355	positive	MGI_C57BL6J_3645137	Gm7536	NCBI_Gene:665189,ENSEMBL:ENSMUSG00000057036	MGI:3645137	pseudogene	predicted gene 7536
3	gene	24.48671	24.48749	positive	MGI_C57BL6J_1920306	2900080J11Rik	NA	NA	unclassified gene	RIKEN cDNA 2900080J11 gene
3	gene	24.56207	24.56218	positive	MGI_C57BL6J_5454481	Gm24704	ENSEMBL:ENSMUSG00000070227	MGI:5454481	snRNA gene	predicted gene, 24704
3	gene	24.71872	24.71898	positive	MGI_C57BL6J_5453839	Gm24062	ENSEMBL:ENSMUSG00000088115	MGI:5453839	unclassified non-coding RNA gene	predicted gene, 24062
3	pseudogene	25.00742	25.00771	negative	MGI_C57BL6J_5662911	Gm42774	ENSEMBL:ENSMUSG00000105009	MGI:5662911	pseudogene	predicted gene 42774
3	gene	25.14407	25.14426	positive	MGI_C57BL6J_5610364	Gm37136	ENSEMBL:ENSMUSG00000102876	MGI:5610364	unclassified gene	predicted gene, 37136
3	pseudogene	25.18480	25.18498	negative	MGI_C57BL6J_5611230	Gm38002	ENSEMBL:ENSMUSG00000102855	MGI:5611230	pseudogene	predicted gene, 38002
3	pseudogene	25.21076	25.21273	negative	MGI_C57BL6J_3704211	Gm10259	NCBI_Gene:100039592,ENSEMBL:ENSMUSG00000069083	MGI:3704211	pseudogene	predicted pseudogene 10259

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	25.42621	26.33286	negative	MGI_C57BL6J_2179435	Nlgn1	NCBI_Gene:192167,ENSEMBL:ENSMUSG00000063887	MGI:2179435	protein coding gene	neuroligin 1
3	gene	25.54602	25.54615	positive	MGI_C57BL6J_5454027	Gm24250	ENSEMBL:ENSMUSG00000087945	MGI:5454027	rRNA gene	predicted gene, 24250
3	gene	25.64956	25.65077	negative	MGI_C57BL6J_1920377	3110039C02Rik	NA	NA	unclassified gene	RIKEN cDNA 3110039C02 gene
3	gene	25.69519	25.70030	negative	MGI_C57BL6J_5610801	Gm37573	ENSEMBL:ENSMUSG00000102397	MGI:5610801	lncRNA gene	predicted gene, 37573
3	pseudogene	25.73123	25.73261	positive	MGI_C57BL6J_3647151	Gm6197	NCBI_Gene:621017,ENSEMBL:ENSMUSG00000104295	MGI:3647151	pseudogene	predicted gene 6197
3	gene	25.86566	25.86752	negative	MGI_C57BL6J_2443798	A830010M09Rik	NA	NA	unclassified gene	RIKEN cDNA A830010M09 gene
3	gene	26.33115	26.33688	positive	MGI_C57BL6J_3698881	A830092H15Rik	NCBI_Gene:100379095,ENSEMBL:ENSMUSG00000074664	MGI:3698881	lncRNA gene	RIKEN cDNA A830092H15 gene
3	pseudogene	26.38044	26.38256	positive	MGI_C57BL6J_3648363	Gm4855	NCBI_Gene:229152,ENSEMBL:ENSMUSG00000102274	MGI:3648363	pseudogene	predicted gene 4855
3	gene	26.62618	26.62631	negative	MGI_C57BL6J_5455550	Gm25773	ENSEMBL:ENSMUSG00000080368	MGI:5455550	miRNA gene	predicted gene, 25773
3	gene	26.63762	26.98321	positive	MGI_C57BL6J_1918112	Spata16	NCBI_Gene:70862,ENSEMBL:ENSMUSG00000039335	MGI:1918112	protein coding gene	spermatogenesis associated 16
3	gene	26.85020	26.87914	negative	MGI_C57BL6J_5591617	Gm32458	NCBI_Gene:102635017	MGI:5591617	lncRNA gene	predicted gene, 32458
3	pseudogene	27.01276	27.01287	positive	MGI_C57BL6J_5610887	Gm37659	ENSEMBL:ENSMUSG00000103712	MGI:5610887	pseudogene	predicted gene, 37659
3	gene	27.02642	27.02655	negative	MGI_C57BL6J_5690856	Gm44464	ENSEMBL:ENSMUSG00000105670	MGI:5690856	miRNA gene	predicted gene, 44464
3	pseudogene	27.04674	27.04798	negative	MGI_C57BL6J_3645515	Gm7558	NCBI_Gene:665258,ENSEMBL:ENSMUSG00000102908	MGI:3645515	pseudogene	predicted gene 7558
3	gene	27.09722	27.15391	negative	MGI_C57BL6J_95281	Ect2	NCBI_Gene:13605,ENSEMBL:ENSMUSG00000027699	MGI:95281	protein coding gene	ect2 oncogene
3	gene	27.10898	27.10909	positive	MGI_C57BL6J_5454929	Gm25152	ENSEMBL:ENSMUSG00000087742	MGI:5454929	snoRNA gene	predicted gene, 25152
3	gene	27.15403	27.15702	positive	MGI_C57BL6J_1923907	1700125G22Rik	NCBI_Gene:76657,ENSEMBL:ENSMUSG00000097584	MGI:1923907	lncRNA gene	RIKEN cDNA 1700125G22 gene
3	gene	27.18296	27.28461	positive	MGI_C57BL6J_2443191	Nceh1	NCBI_Gene:320024,ENSEMBL:ENSMUSG00000027698	MGI:2443191	protein coding gene	neutral cholesterol ester hydrolase 1
3	gene	27.26033	27.28446	positive	MGI_C57BL6J_5625077	Gm42192	NCBI_Gene:105247008	MGI:5625077	lncRNA gene	predicted gene, 42192
3	pseudogene	27.27806	27.27845	positive	MGI_C57BL6J_5610419	Gm37191	ENSEMBL:ENSMUSG00000102186	MGI:5610419	pseudogene	predicted gene, 37191
3	pseudogene	27.30841	27.30867	negative	MGI_C57BL6J_5663482	Gm43345	ENSEMBL:ENSMUSG00000105806	MGI:5663482	pseudogene	predicted gene 43345
3	gene	27.31703	27.34243	positive	MGI_C57BL6J_107414	Tnfsf10	NCBI_Gene:22035,ENSEMBL:ENSMUSG00000039304	MGI:107414	protein coding gene	tumor necrosis factor (ligand) superfamily, member 10
3	gene	27.37131	27.37923	positive	MGI_C57BL6J_2441906	Ghsr	NCBI_Gene:208188,ENSEMBL:ENSMUSG00000051136	MGI:2441906	protein coding gene	growth hormone secretagogue receptor
3	gene	27.41511	27.41615	negative	MGI_C57BL6J_1924904	C430049A07Rik	NA	NA	unclassified gene	RIKEN cDNA C430049A07 gene
3	gene	27.41616	27.71311	negative	MGI_C57BL6J_1919257	Fndc3b	NCBI_Gene:72007,ENSEMBL:ENSMUSG00000039286	MGI:1919257	protein coding gene	fibronectin type III domain containing 3B
3	gene	27.44166	27.44411	positive	MGI_C57BL6J_5625078	Gm42193	NCBI_Gene:105247009	MGI:5625078	lncRNA gene	predicted gene, 42193
3	gene	27.48228	27.48424	positive	MGI_C57BL6J_5591897	Gm32738	NCBI_Gene:102635381	MGI:5591897	lncRNA gene	predicted gene, 32738
3	gene	27.54664	27.54787	positive	MGI_C57BL6J_5663481	Gm43344	ENSEMBL:ENSMUSG00000106625	MGI:5663481	unclassified gene	predicted gene 43344

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	27.41616	27.71311	negative	MGI_C57BL6J_1919257	Fndc3b	NCBI_Gene:72007,ENSEMBL:ENSMUSG00000039286	MGI:1919257	protein coding gene	fibronectin type III domain containing 3B
3	gene	27.58490	27.58499	negative	MGI_C57BL6J_4834306	Mir3092	miRBase:MI0014085,NCBI_Gene:100526525,ENSEMBL:ENSMUSG00000092695	MGI:4834306	miRNA gene	microRNA 3092
3	gene	27.77786	27.84092	positive	MGI_C57BL6J_5625079	Gm42194	NCBI_Gene:105247010	MGI:5625079	lncRNA gene	predicted gene, 42194
3	gene	27.79788	27.81538	negative	MGI_C57BL6J_5591954	Gm32795	NCBI_Gene:102635463	MGI:5591954	lncRNA gene	predicted gene, 32795
3	gene	27.86606	27.89639	negative	MGI_C57BL6J_2685410	Tmem212	NCBI_Gene:208613,ENSEMBL:ENSMUSG00000043164	MGI:2685410	protein coding gene	transmembrane protein 212
3	gene	27.86811	27.86827	positive	MGI_C57BL6J_5455817	Gm26040	ENSEMBL:ENSMUSG00000088772	MGI:5455817	snoRNA gene	predicted gene, 26040
3	gene	27.89680	27.90023	negative	MGI_C57BL6J_5625080	Gm42195	NCBI_Gene:105247011	MGI:5625080	lncRNA gene	predicted gene, 42195
3	gene	27.93841	28.13336	positive	MGI_C57BL6J_109585	Pld1	NCBI_Gene:18805,ENSEMBL:ENSMUSG00000027695	MGI:109585	protein coding gene	phospholipase D1
3	gene	28.17651	28.21221	positive	MGI_C57BL6J_5625081	Gm42196	NCBI_Gene:105247012,ENSEMBL:ENSMUSG00000109716	MGI:5625081	lncRNA gene	predicted gene, 42196
3	pseudogene	28.24552	28.24577	positive	MGI_C57BL6J_5610326	Gm37098	ENSEMBL:ENSMUSG00000103729	MGI:5610326	pseudogene	predicted gene, 37098
3	gene	28.26321	28.67586	positive	MGI_C57BL6J_1916264	Tnik	NCBI_Gene:665113,ENSEMBL:ENSMUSG00000027692	MGI:1916264	protein coding gene	TRAF2 and NCK interacting kinase
3	gene	28.26928	28.26983	positive	MGI_C57BL6J_2139599	AA589472	NA	NA	unclassified gene	expressed sequence AA589472
3	gene	28.32436	28.32609	positive	MGI_C57BL6J_5610765	Gm37537	ENSEMBL:ENSMUSG00000103420	MGI:5610765	unclassified gene	predicted gene, 37537

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	28.26321	28.67586	positive	MGI_C57BL6J_1916264	Tnik	NCBI_Gene:665113,ENSEMBL:ENSMUSG00000027692	MGI:1916264	protein coding gene	TRAF2 and NCK interacting kinase
3	gene	28.69790	28.73136	positive	MGI_C57BL6J_1095438	Slc2a2	NCBI_Gene:20526,ENSEMBL:ENSMUSG00000027690	MGI:1095438	protein coding gene	solute carrier family 2 (facilitated glucose transporter), member 2
3	gene	28.70267	28.78111	negative	MGI_C57BL6J_1920861	1700112D23Rik	NCBI_Gene:73611,ENSEMBL:ENSMUSG00000091329	MGI:1920861	lncRNA gene	RIKEN cDNA 1700112D23 gene
3	pseudogene	28.76353	28.76539	negative	MGI_C57BL6J_3648080	Gm6505	NCBI_Gene:624446,ENSEMBL:ENSMUSG00000070522	MGI:3648080	pseudogene	predicted pseudogene 6505
3	gene	28.78127	28.79885	positive	MGI_C57BL6J_1933735	Eif5a2	NCBI_Gene:208691,ENSEMBL:ENSMUSG00000050192	MGI:1933735	protein coding gene	eukaryotic translation initiation factor 5A2
3	gene	28.79064	28.80542	negative	MGI_C57BL6J_5592109	Gm32950	NCBI_Gene:102635671,ENSEMBL:ENSMUSG00000103827	MGI:5592109	lncRNA gene	predicted gene, 32950
3	gene	28.80544	28.80742	positive	MGI_C57BL6J_1915278	Rpl22l1	NCBI_Gene:68028,ENSEMBL:ENSMUSG00000039221	MGI:1915278	protein coding gene	ribosomal protein L22 like 1
3	gene	28.80720	28.81618	negative	MGI_C57BL6J_5592210	Gm33051	NCBI_Gene:102635804,ENSEMBL:ENSMUSG00000104444	MGI:5592210	lncRNA gene	predicted gene, 33051
3	gene	28.85203	28.85426	negative	MGI_C57BL6J_5611095	Gm37867	ENSEMBL:ENSMUSG00000104275	MGI:5611095	lncRNA gene	predicted gene, 37867
3	gene	28.87981	28.88346	positive	MGI_C57BL6J_5611152	Gm37924	ENSEMBL:ENSMUSG00000102482	MGI:5611152	unclassified gene	predicted gene, 37924
3	gene	28.88346	28.89728	negative	MGI_C57BL6J_5592261	Gm33102	NCBI_Gene:102635876	MGI:5592261	lncRNA gene	predicted gene, 33102
3	gene	28.89262	28.92672	positive	MGI_C57BL6J_2686373	Gm1527	NCBI_Gene:385263,ENSEMBL:ENSMUSG00000074655	MGI:2686373	protein coding gene	predicted gene 1527
3	gene	29.04377	29.04555	negative	MGI_C57BL6J_5592313	Gm33154	NCBI_Gene:102635945	MGI:5592313	lncRNA gene	predicted gene, 33154
3	gene	29.08072	29.69121	positive	MGI_C57BL6J_1922990	Egfem1	NCBI_Gene:75740,ENSEMBL:ENSMUSG00000063600	MGI:1922990	protein coding gene	EGF-like and EMI domain containing 1
3	gene	29.17484	29.17693	positive	MGI_C57BL6J_5611257	Gm38029	ENSEMBL:ENSMUSG00000103992	MGI:5611257	unclassified gene	predicted gene, 38029
3	gene	29.20934	29.21198	positive	MGI_C57BL6J_2442122	D230021J17Rik	NA	NA	unclassified gene	RIKEN cDNA D230021J17 gene
3	gene	29.21989	29.22125	positive	MGI_C57BL6J_5611193	Gm37965	ENSEMBL:ENSMUSG00000102579	MGI:5611193	unclassified gene	predicted gene, 37965
3	gene	29.26628	29.26684	negative	MGI_C57BL6J_2139582	AA516838	NA	NA	unclassified gene	expressed sequence AA516838
3	gene	29.41682	29.41692	positive	MGI_C57BL6J_3691605	Mir551b	miRBase:MI0004131,NCBI_Gene:791072,ENSEMBL:ENSMUSG00000076120	MGI:3691605	miRNA gene	microRNA 551b
3	gene	29.63674	29.63685	positive	MGI_C57BL6J_5531333	Mir21b	miRBase:MI0021906,NCBI_Gene:102466637,ENSEMBL:ENSMUSG00000098315	MGI:5531333	miRNA gene	microRNA 21b
3	gene	29.66251	29.69656	negative	MGI_C57BL6J_5625082	Gm42197	NCBI_Gene:105247013	MGI:5625082	lncRNA gene	predicted gene, 42197
3	gene	29.76404	29.89323	negative	MGI_C57BL6J_5592365	Gm33206	NCBI_Gene:102636014,ENSEMBL:ENSMUSG00000102574	MGI:5592365	lncRNA gene	predicted gene, 33206
3	pseudogene	29.77128	29.77142	positive	MGI_C57BL6J_5610785	Gm37557	ENSEMBL:ENSMUSG00000103095	MGI:5610785	pseudogene	predicted gene, 37557
3	gene	29.89101	29.92419	positive	MGI_C57BL6J_5564803	Mannr	NCBI_Gene:102636083,ENSEMBL:ENSMUSG00000102590	MGI:5564803	lncRNA gene	Mecom adjacent non-protein coding RNA
3	pseudogene	29.92654	29.92697	positive	MGI_C57BL6J_5610509	Gm37281	ENSEMBL:ENSMUSG00000102884	MGI:5610509	pseudogene	predicted gene, 37281
3	gene	29.95130	30.54801	negative	MGI_C57BL6J_95457	Mecom	NCBI_Gene:14013,ENSEMBL:ENSMUSG00000027684	MGI:95457	protein coding gene	MDS1 and EVI1 complex locus
3	gene	30.01238	30.05481	positive	MGI_C57BL6J_4439646	Mecomos	ENSEMBL:ENSMUSG00000085702	MGI:4439646	antisense lncRNA gene	MDS1 and EVI1 complex locus, opposite strand
3	gene	30.16025	30.16189	negative	MGI_C57BL6J_5611294	Gm38066	ENSEMBL:ENSMUSG00000104486	MGI:5611294	unclassified gene	predicted gene, 38066

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	29.95130	30.54801	negative	MGI_C57BL6J_95457	Mecom	NCBI_Gene:14013,ENSEMBL:ENSMUSG00000027684	MGI:95457	protein coding gene	MDS1 and EVI1 complex locus
3	gene	30.22557	30.22769	negative	MGI_C57BL6J_5611425	Gm38197	ENSEMBL:ENSMUSG00000102460	MGI:5611425	unclassified gene	predicted gene, 38197
3	gene	30.26684	30.28019	negative	MGI_C57BL6J_3648282	Gm10258	NCBI_Gene:545510,ENSEMBL:ENSMUSG00000069074	MGI:3648282	unclassified non-coding RNA gene	predicted gene 10258
3	gene	30.27232	30.27438	negative	MGI_C57BL6J_5611590	Gm38362	ENSEMBL:ENSMUSG00000103870	MGI:5611590	unclassified gene	predicted gene, 38362
3	gene	30.34998	30.35132	negative	MGI_C57BL6J_1924752	9530010C24Rik	NA	NA	unclassified gene	RIKEN cDNA 9530010C24 gene
3	gene	30.48843	30.48929	positive	MGI_C57BL6J_5610252	Gm37024	ENSEMBL:ENSMUSG00000104079	MGI:5610252	unclassified gene	predicted gene, 37024
3	gene	30.50172	30.50381	negative	MGI_C57BL6J_5610880	Gm37652	ENSEMBL:ENSMUSG00000103738	MGI:5610880	unclassified gene	predicted gene, 37652
3	gene	30.55270	30.56424	negative	MGI_C57BL6J_5611486	Gm38258	ENSEMBL:ENSMUSG00000102256	MGI:5611486	lncRNA gene	predicted gene, 38258
3	pseudogene	30.56166	30.56213	negative	MGI_C57BL6J_5611381	Gm38153	ENSEMBL:ENSMUSG00000104243	MGI:5611381	pseudogene	predicted gene, 38153
3	gene	30.59484	30.59576	negative	MGI_C57BL6J_1920499	1600017P15Rik	ENSEMBL:ENSMUSG00000102505,ENSEMBL:ENSMUSG00000065361	MGI:1920499	unclassified gene	RIKEN cDNA 1600017P15 gene
3	gene	30.59707	30.59994	negative	MGI_C57BL6J_1923902	Actrt3	NCBI_Gene:76652,ENSEMBL:ENSMUSG00000037737	MGI:1923902	protein coding gene	actin related protein T3
3	gene	30.60127	30.60134	positive	MGI_C57BL6J_4414091	n-TVaac8	NCBI_Gene:102467402	MGI:4414091	tRNA gene	nuclear encoded tRNA valine 8 (anticodon AAC)
3	gene	30.60206	30.61987	positive	MGI_C57BL6J_1931415	Mynn	NCBI_Gene:80732,ENSEMBL:ENSMUSG00000037730	MGI:1931415	protein coding gene	myoneurin
3	gene	30.62427	30.64787	negative	MGI_C57BL6J_1919077	Lrrc34	NCBI_Gene:71827,ENSEMBL:ENSMUSG00000027702	MGI:1919077	protein coding gene	leucine rich repeat containing 34
3	gene	30.64451	30.67243	positive	MGI_C57BL6J_1915557	Lrriq4	NCBI_Gene:68307,ENSEMBL:ENSMUSG00000027703	MGI:1915557	protein coding gene	leucine-rich repeats and IQ motif containing 4
3	gene	30.67855	30.69984	negative	MGI_C57BL6J_2443864	Lrrc31	NCBI_Gene:320352,ENSEMBL:ENSMUSG00000074653	MGI:2443864	protein coding gene	leucine rich repeat containing 31
3	gene	30.68594	30.69301	positive	MGI_C57BL6J_3705271	Gm15462	NCBI_Gene:108168861,ENSEMBL:ENSMUSG00000086189	MGI:3705271	lncRNA gene	predicted gene 15462
3	gene	30.74629	30.76717	positive	MGI_C57BL6J_1923203	Samd7	NCBI_Gene:75953,ENSEMBL:ENSMUSG00000051860	MGI:1923203	protein coding gene	sterile alpha motif domain containing 7
3	gene	30.75231	30.75665	negative	MGI_C57BL6J_5592749	Gm33590	NCBI_Gene:102636556	MGI:5592749	lncRNA gene	predicted gene, 33590
3	gene	30.79257	30.79356	negative	MGI_C57BL6J_1918530	4933429H19Rik	ENSEMBL:ENSMUSG00000097786	MGI:1918530	lncRNA gene	RIKEN cDNA 4933429H19 gene
3	gene	30.79276	30.82126	positive	MGI_C57BL6J_1916526	Sec62	NCBI_Gene:69276,ENSEMBL:ENSMUSG00000027706	MGI:1916526	protein coding gene	SEC62 homolog (S. cerevisiae)
3	pseudogene	30.82857	30.82883	negative	MGI_C57BL6J_5611308	Gm38080	ENSEMBL:ENSMUSG00000104361	MGI:5611308	pseudogene	predicted gene, 38080
3	gene	30.84154	30.85199	negative	MGI_C57BL6J_5625083	Gm42198	NCBI_Gene:105247015	MGI:5625083	lncRNA gene	predicted gene, 42198
3	gene	30.85248	30.85586	negative	MGI_C57BL6J_5625084	Gm42199	NCBI_Gene:105247016	MGI:5625084	lncRNA gene	predicted gene, 42199
3	gene	30.85587	30.89719	positive	MGI_C57BL6J_1919112	Gpr160	NCBI_Gene:71862,ENSEMBL:ENSMUSG00000037661	MGI:1919112	protein coding gene	G protein-coupled receptor 160
3	gene	30.89929	30.96948	negative	MGI_C57BL6J_2181434	Phc3	NCBI_Gene:241915,ENSEMBL:ENSMUSG00000037652	MGI:2181434	protein coding gene	polyhomeotic 3
3	gene	30.95733	30.95764	negative	MGI_C57BL6J_1924590	9530022L04Rik	ENSEMBL:ENSMUSG00000102369	MGI:1924590	unclassified gene	RIKEN cDNA 9530022L04 gene
3	pseudogene	30.97291	30.97511	positive	MGI_C57BL6J_3781157	Gm2979	NCBI_Gene:100040809,ENSEMBL:ENSMUSG00000102741	MGI:3781157	pseudogene	predicted gene 2979
3	gene	30.99574	31.05296	positive	MGI_C57BL6J_99260	Prkci	NCBI_Gene:18759,ENSEMBL:ENSMUSG00000037643	MGI:99260	protein coding gene	protein kinase C, iota
3	gene	31.03897	31.03903	positive	MGI_C57BL6J_5531134	Mir7008	miRBase:MI0022857,NCBI_Gene:102465610,ENSEMBL:ENSMUSG00000098890	MGI:5531134	miRNA gene	microRNA 7008
3	gene	31.06130	31.06669	positive	MGI_C57BL6J_5592800	Gm33641	NCBI_Gene:102636630	MGI:5592800	lncRNA gene	predicted gene, 33641
3	gene	31.06243	31.07994	negative	MGI_C57BL6J_5592853	Gm33694	NCBI_Gene:102636694	MGI:5592853	lncRNA gene	predicted gene, 33694

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	pseudogene	31.64480	31.69058	negative	MGI_C57BL6J_3779607	Gm6558	NCBI_Gene:625125,ENSEMBL:ENSMUSG00000103499	MGI:3779607	pseudogene	predicted gene 6558
3	gene	31.68642	31.69214	positive	MGI_C57BL6J_5593045	Gm33886	NCBI_Gene:102636961	MGI:5593045	lncRNA gene	predicted gene, 33886
3	gene	31.89883	31.90212	negative	MGI_C57BL6J_5593190	Gm34031	NCBI_Gene:102637147	MGI:5593190	lncRNA gene	predicted gene, 34031
3	gene	31.90213	32.20018	positive	MGI_C57BL6J_1919663	Kcnmb2	NCBI_Gene:72413,ENSEMBL:ENSMUSG00000037610	MGI:1919663	protein coding gene	potassium large conductance calcium-activated channel, subfamily M, beta member 2
3	gene	31.95476	31.95780	positive	MGI_C57BL6J_5611062	Gm37834	ENSEMBL:ENSMUSG00000103539	MGI:5611062	unclassified gene	predicted gene, 37834
3	gene	32.23753	32.32631	negative	MGI_C57BL6J_5625086	Gm42201	NCBI_Gene:105247019	MGI:5625086	lncRNA gene	predicted gene, 42201
3	pseudogene	32.26033	32.26111	positive	MGI_C57BL6J_5610998	Gm37770	NCBI_Gene:108168862,ENSEMBL:ENSMUSG00000103643	MGI:5610998	pseudogene	predicted gene, 37770
3	gene	32.33479	32.36601	negative	MGI_C57BL6J_1195270	Zmat3	NCBI_Gene:22401,ENSEMBL:ENSMUSG00000027663	MGI:1195270	protein coding gene	zinc finger matrin type 3
3	gene	32.36549	32.36744	positive	MGI_C57BL6J_1914826	4930429B21Rik	NCBI_Gene:67576	MGI:1914826	lncRNA gene	RIKEN cDNA 4930429B21 gene
3	gene	32.37158	32.37299	negative	MGI_C57BL6J_5610218	Gm36990	ENSEMBL:ENSMUSG00000102825	MGI:5610218	unclassified gene	predicted gene, 36990
3	gene	32.37898	32.38470	negative	MGI_C57BL6J_5625087	Gm42202	NCBI_Gene:105247020	MGI:5625087	lncRNA gene	predicted gene, 42202
3	gene	32.39707	32.46849	positive	MGI_C57BL6J_1206581	Pik3ca	NCBI_Gene:18706,ENSEMBL:ENSMUSG00000027665	MGI:1206581	protein coding gene	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
3	gene	32.45459	32.45576	positive	MGI_C57BL6J_5610351	Gm37123	ENSEMBL:ENSMUSG00000103039	MGI:5610351	unclassified gene	predicted gene, 37123
3	gene	32.46778	32.50290	negative	MGI_C57BL6J_3612244	Kcnmb3	NCBI_Gene:100502876,ENSEMBL:ENSMUSG00000091091	MGI:3612244	protein coding gene	potassium large conductance calcium-activated channel, subfamily M, beta member 3
3	gene	32.51026	32.52083	positive	MGI_C57BL6J_1915028	Zfp639	NCBI_Gene:67778,ENSEMBL:ENSMUSG00000027667	MGI:1915028	protein coding gene	zinc finger protein 639
3	gene	32.51180	32.51234	negative	MGI_C57BL6J_5610820	Gm37592	ENSEMBL:ENSMUSG00000104231	MGI:5610820	lncRNA gene	predicted gene, 37592
3	gene	32.52946	32.57924	positive	MGI_C57BL6J_1914664	Mfn1	NCBI_Gene:67414,ENSEMBL:ENSMUSG00000027668	MGI:1914664	protein coding gene	mitofusin 1
3	gene	32.58033	32.61659	negative	MGI_C57BL6J_104581	Gnb4	NCBI_Gene:14696,ENSEMBL:ENSMUSG00000027669	MGI:104581	protein coding gene	guanine nucleotide binding protein (G protein), beta 4
3	gene	32.61086	32.61351	positive	MGI_C57BL6J_5610868	Gm37640	ENSEMBL:ENSMUSG00000102862	MGI:5610868	lncRNA gene	predicted gene, 37640
3	gene	32.70630	32.72697	positive	MGI_C57BL6J_1861453	Actl6a	NCBI_Gene:56456,ENSEMBL:ENSMUSG00000027671	MGI:1861453	protein coding gene	actin-like 6A
3	gene	32.72178	32.72209	negative	MGI_C57BL6J_5610581	Gm37353	ENSEMBL:ENSMUSG00000103590	MGI:5610581	unclassified gene	predicted gene, 37353
3	gene	32.72540	32.73761	negative	MGI_C57BL6J_1921850	Mrpl47	NCBI_Gene:74600,ENSEMBL:ENSMUSG00000037531	MGI:1921850	protein coding gene	mitochondrial ribosomal protein L47
3	gene	32.73610	32.73761	negative	MGI_C57BL6J_3704212	Gm9859	NA	NA	unclassified gene	predicted gene 9859
3	gene	32.73699	32.75157	positive	MGI_C57BL6J_1913296	Ndufb5	NCBI_Gene:66046,ENSEMBL:ENSMUSG00000027673	MGI:1913296	protein coding gene	NADH:ubiquinone oxidoreductase subunit B5
3	gene	32.81702	32.93807	positive	MGI_C57BL6J_1919857	Usp13	NCBI_Gene:72607,ENSEMBL:ENSMUSG00000056900	MGI:1919857	protein coding gene	ubiquitin specific peptidase 13 (isopeptidase T-3)
3	pseudogene	32.88001	32.88061	negative	MGI_C57BL6J_3783022	Gm15574	ENSEMBL:ENSMUSG00000081883	MGI:3783022	pseudogene	predicted gene 15574
3	gene	32.93931	32.98330	positive	MGI_C57BL6J_5610687	Gm37459	ENSEMBL:ENSMUSG00000104283	MGI:5610687	lncRNA gene	predicted gene, 37459
3	gene	32.94793	33.14327	negative	MGI_C57BL6J_1916672	Pex5l	NCBI_Gene:58869,ENSEMBL:ENSMUSG00000027674	MGI:1916672	protein coding gene	peroxisomal biogenesis factor 5-like
3	gene	33.01196	33.01211	positive	MGI_C57BL6J_5452991	Gm23214	ENSEMBL:ENSMUSG00000084665	MGI:5452991	snRNA gene	predicted gene, 23214
3	gene	33.02478	33.08861	positive	MGI_C57BL6J_1921124	4930419G24Rik	NCBI_Gene:73874,ENSEMBL:ENSMUSG00000087625	MGI:1921124	lncRNA gene	RIKEN cDNA 4930419G24 gene
3	gene	33.03423	33.03705	negative	MGI_C57BL6J_5610671	Gm37443	ENSEMBL:ENSMUSG00000102581	MGI:5610671	unclassified gene	predicted gene, 37443
3	gene	33.07392	33.07636	negative	MGI_C57BL6J_5011630	Gm19445	ENSEMBL:ENSMUSG00000102498	MGI:5011630	unclassified gene	predicted gene, 19445
3	pseudogene	33.19080	33.19104	positive	MGI_C57BL6J_5610356	Gm37128	ENSEMBL:ENSMUSG00000103896	MGI:5610356	pseudogene	predicted gene, 37128
3	gene	33.26072	33.26082	negative	MGI_C57BL6J_5531356	Gm27974	ENSEMBL:ENSMUSG00000098622	MGI:5531356	miRNA gene	predicted gene, 27974
3	gene	33.28312	33.28565	positive	MGI_C57BL6J_5610259	Gm37031	ENSEMBL:ENSMUSG00000104384	MGI:5610259	unclassified gene	predicted gene, 37031
3	gene	33.39306	33.39320	negative	MGI_C57BL6J_5454557	Gm24780	ENSEMBL:ENSMUSG00000088260	MGI:5454557	snoRNA gene	predicted gene, 24780
3	gene	33.39338	33.39485	negative	MGI_C57BL6J_5610626	Gm37398	ENSEMBL:ENSMUSG00000104203	MGI:5610626	unclassified gene	predicted gene, 37398
3	gene	33.54027	33.54342	positive	MGI_C57BL6J_5593364	Gm34205	NCBI_Gene:102637377	MGI:5593364	lncRNA gene	predicted gene, 34205
3	pseudogene	33.62159	33.62245	positive	MGI_C57BL6J_3649050	Gm5845	NCBI_Gene:545512,ENSEMBL:ENSMUSG00000103423	MGI:3649050	pseudogene	predicted gene 5845
3	pseudogene	33.68451	33.68487	negative	MGI_C57BL6J_5662831	Gm42694	ENSEMBL:ENSMUSG00000104954	MGI:5662831	pseudogene	predicted gene 42694
3	gene	33.68696	33.69200	negative	MGI_C57BL6J_5625088	Gm42203	NCBI_Gene:105247021	MGI:5625088	lncRNA gene	predicted gene, 42203
3	gene	33.70336	33.75962	negative	MGI_C57BL6J_5663803	Gm43666	ENSEMBL:ENSMUSG00000104588	MGI:5663803	lncRNA gene	predicted gene 43666
3	pseudogene	33.73060	33.73353	positive	MGI_C57BL6J_5010796	Gm18611	NCBI_Gene:100417436,ENSEMBL:ENSMUSG00000106231	MGI:5010796	pseudogene	predicted gene, 18611
3	gene	33.79983	33.81486	positive	MGI_C57BL6J_1914370	Ttc14	NCBI_Gene:67120,ENSEMBL:ENSMUSG00000027677	MGI:1914370	protein coding gene	tetratricopeptide repeat domain 14
3	gene	33.81076	33.84432	negative	MGI_C57BL6J_1289263	Ccdc39	NCBI_Gene:51938,ENSEMBL:ENSMUSG00000027676	MGI:1289263	protein coding gene	coiled-coil domain containing 39
3	gene	33.81726	33.81795	positive	MGI_C57BL6J_5663277	Gm43140	ENSEMBL:ENSMUSG00000105286	MGI:5663277	lncRNA gene	predicted gene 43140
3	gene	33.86681	33.89758	negative	MGI_C57BL6J_1921204	4930431L21Rik	ENSEMBL:ENSMUSG00000105475	MGI:1921204	lncRNA gene	RIKEN cDNA 4930431L21 gene
3	gene	33.90684	33.90823	positive	MGI_C57BL6J_5625089	Gm42204	NCBI_Gene:105247022	MGI:5625089	lncRNA gene	predicted gene, 42204
3	gene	33.95620	33.95715	positive	MGI_C57BL6J_1922225	4930502C17Rik	ENSEMBL:ENSMUSG00000106584	MGI:1922225	unclassified gene	RIKEN cDNA 4930502C17 gene
3	gene	33.95907	33.95920	negative	MGI_C57BL6J_5452952	Gm23175	ENSEMBL:ENSMUSG00000077559	MGI:5452952	snoRNA gene	predicted gene, 23175
3	gene	33.97218	33.97545	negative	MGI_C57BL6J_5826470	Gm46833	NCBI_Gene:108168913	MGI:5826470	lncRNA gene	predicted gene, 46833
3	pseudogene	34.00477	34.00551	negative	MGI_C57BL6J_3642317	Gm9791	NCBI_Gene:100040232,ENSEMBL:ENSMUSG00000044434	MGI:3642317	pseudogene	predicted pseudogene 9791
3	gene	34.00880	34.01188	negative	MGI_C57BL6J_5826435	Gm46798	NCBI_Gene:108168863	MGI:5826435	lncRNA gene	predicted gene, 46798
3	gene	34.01771	34.01988	negative	MGI_C57BL6J_5663214	Gm43077	ENSEMBL:ENSMUSG00000105535	MGI:5663214	lncRNA gene	predicted gene 43077
3	gene	34.01994	34.07032	positive	MGI_C57BL6J_104860	Fxr1	NCBI_Gene:14359,ENSEMBL:ENSMUSG00000027680	MGI:104860	protein coding gene	fragile X mental retardation gene 1, autosomal homolog
3	gene	34.05434	34.05543	negative	MGI_C57BL6J_5663804	Gm43667	ENSEMBL:ENSMUSG00000105135	MGI:5663804	unclassified gene	predicted gene 43667
3	gene	34.05602	34.08135	negative	MGI_C57BL6J_1914963	Dnajc19	NCBI_Gene:67713,ENSEMBL:ENSMUSG00000027679	MGI:1914963	protein coding gene	DnaJ heat shock protein family (Hsp40) member C19
3	gene	34.07066	34.07600	positive	MGI_C57BL6J_5663805	Gm43668	ENSEMBL:ENSMUSG00000105176	MGI:5663805	unclassified gene	predicted gene 43668
3	gene	34.10427	34.68262	positive	MGI_C57BL6J_2444112	Sox2ot	NCBI_Gene:320478,ENSEMBL:ENSMUSG00000105265	MGI:2444112	lncRNA gene	SOX2 overlapping transcript (non-protein coding)
3	pseudogene	34.18331	34.18419	positive	MGI_C57BL6J_3647478	Gm5708	NCBI_Gene:435727,ENSEMBL:ENSMUSG00000105739	MGI:3647478	pseudogene	predicted gene 5708
3	gene	34.28133	34.35199	negative	MGI_C57BL6J_5621390	Gm38505	NCBI_Gene:102638008,ENSEMBL:ENSMUSG00000092196	MGI:5621390	lncRNA gene	predicted gene, 38505
3	gene	34.41544	34.41816	positive	MGI_C57BL6J_5593758	Gm34599	NCBI_Gene:102637903,ENSEMBL:ENSMUSG00000105577	MGI:5593758	lncRNA gene	predicted gene, 34599
3	gene	34.42737	34.43510	negative	MGI_C57BL6J_5141980	Gm20515	ENSEMBL:ENSMUSG00000092242	MGI:5141980	lncRNA gene	predicted gene 20515
3	gene	34.48143	34.48221	negative	MGI_C57BL6J_5579841	Gm29135	ENSEMBL:ENSMUSG00000099437	MGI:5579841	lncRNA gene	predicted gene 29135
3	gene	34.56034	34.56055	positive	MGI_C57BL6J_5530785	Gm27403	ENSEMBL:ENSMUSG00000098795	MGI:5530785	unclassified non-coding RNA gene	predicted gene, 27403
3	gene	34.56526	34.57220	negative	MGI_C57BL6J_5662832	Gm42695	ENSEMBL:ENSMUSG00000106525	MGI:5662832	lncRNA gene	predicted gene 42695
3	gene	34.59782	34.60488	negative	MGI_C57BL6J_5625090	Gm42205	NCBI_Gene:105247023,ENSEMBL:ENSMUSG00000105222	MGI:5625090	lncRNA gene	predicted gene, 42205
3	gene	34.63846	34.63854	positive	MGI_C57BL6J_3811407	Mir1897	miRBase:MI0008314,NCBI_Gene:100316679,ENSEMBL:ENSMUSG00000104797	MGI:3811407	miRNA gene	microRNA 1897
3	gene	34.64326	34.64610	positive	MGI_C57BL6J_5662829	Gm42692	ENSEMBL:ENSMUSG00000104901	MGI:5662829	unclassified gene	predicted gene 42692
3	gene	34.64999	34.65246	positive	MGI_C57BL6J_98364	Sox2	NCBI_Gene:20674,ENSEMBL:ENSMUSG00000074637	MGI:98364	protein coding gene	SRY (sex determining region Y)-box 2
3	gene	34.65318	34.65328	positive	MGI_C57BL6J_5530993	Gm27611	ENSEMBL:ENSMUSG00000098254	MGI:5530993	unclassified non-coding RNA gene	predicted gene, 27611
3	gene	34.66366	34.66429	negative	MGI_C57BL6J_5662830	Gm42693	ENSEMBL:ENSMUSG00000105284	MGI:5662830	unclassified gene	predicted gene 42693
3	gene	34.68263	34.68275	positive	MGI_C57BL6J_5663343	Gm43206	ENSEMBL:ENSMUSG00000105101	MGI:5663343	unclassified gene	predicted gene 43206
3	gene	34.68938	34.69292	positive	MGI_C57BL6J_5594100	Gm34941	NCBI_Gene:102638356	MGI:5594100	lncRNA gene	predicted gene, 34941
3	gene	34.69964	34.71666	negative	MGI_C57BL6J_3781322	Gm3143	NCBI_Gene:100041108,ENSEMBL:ENSMUSG00000105153	MGI:3781322	lncRNA gene	predicted gene 3143
3	gene	34.77208	34.78235	positive	MGI_C57BL6J_5621394	Gm38509	NCBI_Gene:102638436,ENSEMBL:ENSMUSG00000106519	MGI:5621394	lncRNA gene	predicted gene, 38509
3	gene	34.82656	34.87928	positive	MGI_C57BL6J_5434743	Gm21388	NCBI_Gene:100861998,ENSEMBL:ENSMUSG00000114832	MGI:5434743	lncRNA gene	predicted gene, 21388
3	gene	34.92254	34.92265	negative	MGI_C57BL6J_5531088	Mir6378	miRBase:MI0021909,NCBI_Gene:102466155,ENSEMBL:ENSMUSG00000098862	MGI:5531088	miRNA gene	microRNA 6378
3	gene	34.95023	34.95953	positive	MGI_C57BL6J_5594414	Gm35255	NCBI_Gene:102638771	MGI:5594414	lncRNA gene	predicted gene, 35255

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	36.52922	36.53233	negative	MGI_C57BL6J_5663674	Gm43537	ENSEMBL:ENSMUSG00000105022	MGI:5663674	unclassified gene	predicted gene 43537
3	pseudogene	36.53917	36.54010	negative	MGI_C57BL6J_3650891	Gm11550	NCBI_Gene:665709,ENSEMBL:ENSMUSG00000083388	MGI:3650891	pseudogene	predicted gene 11550
3	gene	36.55261	36.56573	positive	MGI_C57BL6J_1355319	Exosc9	NCBI_Gene:50911,ENSEMBL:ENSMUSG00000027714	MGI:1355319	protein coding gene	exosome component 9
3	gene	36.56486	36.57303	negative	MGI_C57BL6J_108069	Ccna2	NCBI_Gene:12428,ENSEMBL:ENSMUSG00000027715	MGI:108069	protein coding gene	cyclin A2
3	gene	36.57314	36.61349	negative	MGI_C57BL6J_1918742	Bbs7	NCBI_Gene:71492,ENSEMBL:ENSMUSG00000037325	MGI:1918742	protein coding gene	Bardet-Biedl syndrome 7 (human)
3	gene	36.62048	36.69022	negative	MGI_C57BL6J_109526	Trpc3	NCBI_Gene:22065,ENSEMBL:ENSMUSG00000027716	MGI:109526	protein coding gene	transient receptor potential cation channel, subfamily C, member 3
3	gene	36.65407	36.65501	negative	MGI_C57BL6J_5595015	Gm35856	NCBI_Gene:102639576	MGI:5595015	lncRNA gene	predicted gene, 35856
3	pseudogene	36.69480	36.69505	negative	MGI_C57BL6J_3651607	Gm12377	ENSEMBL:ENSMUSG00000082548	MGI:3651607	pseudogene	predicted gene 12377
3	pseudogene	36.82435	36.82506	negative	MGI_C57BL6J_3651608	Gm12376	NCBI_Gene:100417988,ENSEMBL:ENSMUSG00000084027	MGI:3651608	pseudogene	predicted gene 12376
3	gene	36.86306	37.05303	positive	MGI_C57BL6J_2444631	4932438A13Rik	NCBI_Gene:229227,ENSEMBL:ENSMUSG00000037270	MGI:2444631	protein coding gene	RIKEN cDNA 4932438A13 gene
3	gene	37.05221	37.06003	negative	MGI_C57BL6J_3650531	Gm12531	ENSEMBL:ENSMUSG00000086090	MGI:3650531	lncRNA gene	predicted gene 12531
3	gene	37.06309	37.12193	positive	MGI_C57BL6J_103258	Adad1	NCBI_Gene:21744,ENSEMBL:ENSMUSG00000027719	MGI:103258	protein coding gene	adenosine deaminase domain containing 1 (testis specific)
3	pseudogene	37.07756	37.07891	positive	MGI_C57BL6J_3651489	Gm12582	NCBI_Gene:652987,ENSEMBL:ENSMUSG00000081705	MGI:3651489	pseudogene	predicted gene 12582
3	pseudogene	37.10808	37.10933	positive	MGI_C57BL6J_3651485	Gm12583	NCBI_Gene:100416060,ENSEMBL:ENSMUSG00000082878	MGI:3651485	pseudogene	predicted gene 12583
3	pseudogene	37.11673	37.11784	positive	MGI_C57BL6J_3651486	Gm12584	ENSEMBL:ENSMUSG00000083857	MGI:3651486	pseudogene	predicted gene 12584
3	gene	37.12052	37.12596	negative	MGI_C57BL6J_96548	Il2	NCBI_Gene:16183,ENSEMBL:ENSMUSG00000027720	MGI:96548	protein coding gene	interleukin 2
3	gene	37.16972	37.17665	negative	MGI_C57BL6J_5595159	Gm36000	NCBI_Gene:102639768	MGI:5595159	lncRNA gene	predicted gene, 36000
3	gene	37.18218	37.18860	positive	MGI_C57BL6J_3650618	Gm12532	NCBI_Gene:102639848,ENSEMBL:ENSMUSG00000084754	MGI:3650618	lncRNA gene	predicted gene 12532
3	gene	37.22276	37.23264	negative	MGI_C57BL6J_1890474	Il21	NCBI_Gene:60505,ENSEMBL:ENSMUSG00000027718	MGI:1890474	protein coding gene	interleukin 21
3	gene	37.22538	37.22711	positive	MGI_C57BL6J_5595327	Gm36168	NCBI_Gene:102639985	MGI:5595327	lncRNA gene	predicted gene, 36168
3	gene	37.23133	37.23247	positive	MGI_C57BL6J_3650303	Gm12534	ENSEMBL:ENSMUSG00000086517	MGI:3650303	lncRNA gene	predicted gene 12534
3	gene	37.23287	37.23334	positive	MGI_C57BL6J_5663959	Gm43822	ENSEMBL:ENSMUSG00000104998	MGI:5663959	unclassified gene	predicted gene 43822
3	gene	37.25678	37.25689	negative	MGI_C57BL6J_5453946	Gm24169	ENSEMBL:ENSMUSG00000094007	MGI:5453946	miRNA gene	predicted gene, 24169
3	gene	37.30775	37.31271	negative	MGI_C57BL6J_2677454	Cetn4	NCBI_Gene:207175,ENSEMBL:ENSMUSG00000045031	MGI:2677454	protein coding gene	centrin 4
3	gene	37.31249	37.32145	positive	MGI_C57BL6J_2686651	Bbs12	NCBI_Gene:241950,ENSEMBL:ENSMUSG00000051444	MGI:2686651	protein coding gene	Bardet-Biedl syndrome 12 (human)
3	gene	37.31252	37.40487	positive	MGI_C57BL6J_5663576	Gm43439	ENSEMBL:ENSMUSG00000106407	MGI:5663576	lncRNA gene	predicted gene 43439
3	pseudogene	37.31253	37.32919	positive	MGI_C57BL6J_3651849	Gm12540	NCBI_Gene:102640067,ENSEMBL:ENSMUSG00000083353	MGI:3651849	pseudogene	predicted gene 12540
3	gene	37.33329	37.35103	negative	MGI_C57BL6J_3649376	Fgf2os	NCBI_Gene:329626,ENSEMBL:ENSMUSG00000054779	MGI:3649376	antisense lncRNA gene	fibroblast growth factor 2, opposite strand
3	gene	37.33902	37.34152	positive	MGI_C57BL6J_5663625	Gm43488	ENSEMBL:ENSMUSG00000105063	MGI:5663625	unclassified gene	predicted gene 43488
3	gene	37.34835	37.41011	positive	MGI_C57BL6J_95516	Fgf2	NCBI_Gene:14173,ENSEMBL:ENSMUSG00000037225	MGI:95516	protein coding gene	fibroblast growth factor 2
3	gene	37.39221	37.39510	negative	MGI_C57BL6J_5663060	Gm42923	ENSEMBL:ENSMUSG00000105134	MGI:5663060	unclassified gene	predicted gene 42923
3	gene	37.40491	37.42021	negative	MGI_C57BL6J_2387618	Nudt6	NCBI_Gene:229228,ENSEMBL:ENSMUSG00000050174	MGI:2387618	protein coding gene	nudix (nucleoside diphosphate linked moiety X)-type motif 6
3	gene	37.41990	37.57910	positive	MGI_C57BL6J_1927170	Spata5	NCBI_Gene:57815,ENSEMBL:ENSMUSG00000027722	MGI:1927170	protein coding gene	spermatogenesis associated 5
3	gene	37.48883	37.49479	positive	MGI_C57BL6J_5663621	Gm43484	ENSEMBL:ENSMUSG00000106166	MGI:5663621	unclassified gene	predicted gene 43484
3	gene	37.54188	37.60239	negative	MGI_C57BL6J_5595571	Gm36412	NCBI_Gene:102640314	MGI:5595571	lncRNA gene	predicted gene, 36412
3	pseudogene	37.55618	37.55650	negative	MGI_C57BL6J_3652207	Gm12564	ENSEMBL:ENSMUSG00000080723	MGI:3652207	pseudogene	predicted gene 12564
3	pseudogene	37.59942	37.60007	negative	MGI_C57BL6J_3652206	Gm12565	NCBI_Gene:665778,ENSEMBL:ENSMUSG00000081093	MGI:3652206	pseudogene	predicted gene 12565
3	gene	37.60989	37.61528	positive	MGI_C57BL6J_1923197	4930594O21Rik	NCBI_Gene:75947,ENSEMBL:ENSMUSG00000085677	MGI:1923197	lncRNA gene	RIKEN cDNA 4930594O21 gene
3	gene	37.63858	37.64066	negative	MGI_C57BL6J_5663059	Gm42922	ENSEMBL:ENSMUSG00000104605	MGI:5663059	unclassified gene	predicted gene 42922
3	gene	37.63995	37.64460	positive	MGI_C57BL6J_1345139	Spry1	NCBI_Gene:24063,ENSEMBL:ENSMUSG00000037211	MGI:1345139	protein coding gene	sprouty RTK signaling antagonist 1
3	gene	37.64461	37.64795	positive	MGI_C57BL6J_5663957	Gm43820	ENSEMBL:ENSMUSG00000106062	MGI:5663957	unclassified gene	predicted gene 43820
3	gene	37.65268	37.65652	negative	MGI_C57BL6J_5826436	Gm46799	NCBI_Gene:108168864	MGI:5826436	lncRNA gene	predicted gene, 46799
3	gene	37.69046	37.69486	negative	MGI_C57BL6J_5625096	Gm42211	NCBI_Gene:105247029	MGI:5625096	lncRNA gene	predicted gene, 42211
3	gene	37.70802	37.71121	positive	MGI_C57BL6J_5663551	Gm43414	ENSEMBL:ENSMUSG00000104935	MGI:5663551	unclassified gene	predicted gene 43414
3	gene	37.71419	37.72449	negative	MGI_C57BL6J_3646006	Gm5148	NCBI_Gene:381438,ENSEMBL:ENSMUSG00000058174	MGI:3646006	protein coding gene	predicted gene 5148
3	pseudogene	37.71471	37.71522	positive	MGI_C57BL6J_3705429	Rps23-ps1	NCBI_Gene:100038875,ENSEMBL:ENSMUSG00000100755	MGI:3705429	pseudogene	ribosomal protein S23, pseudogene 1
3	gene	37.72423	37.74132	positive	MGI_C57BL6J_5595779	Gm36620	NCBI_Gene:102640592	MGI:5595779	lncRNA gene	predicted gene, 36620
3	pseudogene	37.73468	37.73514	positive	MGI_C57BL6J_3643738	Rpl31-ps15	NCBI_Gene:626367,ENSEMBL:ENSMUSG00000097304	MGI:3643738	pseudogene	ribosomal protein L31, pseudogene 15
3	gene	37.75320	37.77440	positive	MGI_C57BL6J_5625095	Gm42210	NCBI_Gene:105247028	MGI:5625095	lncRNA gene	predicted gene, 42210
3	gene	37.76104	37.76730	positive	MGI_C57BL6J_5663058	Gm42921	ENSEMBL:ENSMUSG00000106441	MGI:5663058	lncRNA gene	predicted gene 42921
3	gene	37.80254	37.80265	negative	MGI_C57BL6J_5456181	Gm26404	ENSEMBL:ENSMUSG00000089123	MGI:5456181	snoRNA gene	predicted gene, 26404
3	gene	37.82822	37.84829	positive	MGI_C57BL6J_1925294	4930556A17Rik	NCBI_Gene:102640520	MGI:1925294	lncRNA gene	RIKEN cDNA 4930556A17 gene
3	gene	37.83847	37.83957	positive	MGI_C57BL6J_5662889	Gm42752	ENSEMBL:ENSMUSG00000106621	MGI:5662889	unclassified gene	predicted gene 42752
3	gene	37.84180	37.84307	positive	MGI_C57BL6J_5662890	Gm42753	ENSEMBL:ENSMUSG00000105252	MGI:5662890	unclassified gene	predicted gene 42753
3	gene	37.89881	37.99273	positive	MGI_C57BL6J_5434111	Gm20755	NCBI_Gene:626410,ENSEMBL:ENSMUSG00000106461	MGI:5434111	lncRNA gene	predicted gene, 20755
3	pseudogene	37.95961	37.96009	negative	MGI_C57BL6J_3643378	Gm7799	ENSEMBL:ENSMUSG00000087457	MGI:3643378	pseudogene	predicted gene 7799
3	gene	37.98279	37.98335	positive	MGI_C57BL6J_5662888	Gm42751	ENSEMBL:ENSMUSG00000105099	MGI:5662888	unclassified gene	predicted gene 42751
3	gene	37.99511	37.99524	negative	MGI_C57BL6J_5452676	Gm22899	ENSEMBL:ENSMUSG00000077728	MGI:5452676	snoRNA gene	predicted gene, 22899
3	gene	38.09463	38.13019	negative	MGI_C57BL6J_5663958	Gm43821	ENSEMBL:ENSMUSG00000105219	MGI:5663958	lncRNA gene	predicted gene 43821
3	pseudogene	38.10123	38.10798	negative	MGI_C57BL6J_3643358	Rpl21-ps10	NCBI_Gene:665821,ENSEMBL:ENSMUSG00000105359	MGI:3643358	pseudogene	ribosomal protein L21, pseudogene 10
3	gene	38.15191	38.15915	positive	MGI_C57BL6J_5595839	Gm36680	NCBI_Gene:102640666	MGI:5595839	lncRNA gene	predicted gene, 36680
3	gene	38.20315	38.20812	negative	MGI_C57BL6J_1918592	5430434I15Rik	NCBI_Gene:71342,ENSEMBL:ENSMUSG00000106002	MGI:1918592	lncRNA gene	RIKEN cDNA 5430434I15 gene
3	pseudogene	38.22345	38.22382	positive	MGI_C57BL6J_3781143	Gm2965	NCBI_Gene:100040785,ENSEMBL:ENSMUSG00000105943	MGI:3781143	pseudogene	predicted gene 2965
3	pseudogene	38.25402	38.25480	positive	MGI_C57BL6J_5010140	Gm17955	NCBI_Gene:100416169	MGI:5010140	pseudogene	predicted gene, 17955
3	gene	38.26784	38.26808	negative	MGI_C57BL6J_5455351	Gm25574	ENSEMBL:ENSMUSG00000092986	MGI:5455351	unclassified non-coding RNA gene	predicted gene, 25574
3	gene	38.36615	38.36888	negative	MGI_C57BL6J_5625098	Gm42213	NCBI_Gene:105247031	MGI:5625098	lncRNA gene	predicted gene, 42213
3	gene	38.36940	38.37364	positive	MGI_C57BL6J_5663057	Gm42920	ENSEMBL:ENSMUSG00000106008	MGI:5663057	lncRNA gene	predicted gene 42920
3	gene	38.41897	38.42015	negative	MGI_C57BL6J_1917958	3830422I06Rik	ENSEMBL:ENSMUSG00000106485	MGI:1917958	unclassified gene	RIKEN cDNA 3830422I06 gene
3	gene	38.42655	38.44387	negative	MGI_C57BL6J_5595982	Gm36823	NCBI_Gene:102640855,ENSEMBL:ENSMUSG00000105516	MGI:5595982	lncRNA gene	predicted gene, 36823
3	pseudogene	38.43895	38.43984	negative	MGI_C57BL6J_3646285	Gm7815	NCBI_Gene:665838,ENSEMBL:ENSMUSG00000106201	MGI:3646285	pseudogene	predicted gene 7815
3	gene	38.44926	38.48486	negative	MGI_C57BL6J_2139777	Ankrd50	NCBI_Gene:99696,ENSEMBL:ENSMUSG00000044864	MGI:2139777	protein coding gene	ankyrin repeat domain 50
3	pseudogene	38.55797	38.55886	negative	MGI_C57BL6J_3779766	Gm7824	NCBI_Gene:665855,ENSEMBL:ENSMUSG00000105360	MGI:3779766	pseudogene	predicted gene 7824
3	gene	38.55811	38.55821	negative	MGI_C57BL6J_5454239	Gm24462	ENSEMBL:ENSMUSG00000076385	MGI:5454239	miRNA gene	predicted gene, 24462
3	gene	38.61425	38.61556	positive	MGI_C57BL6J_5663675	Gm43538	ENSEMBL:ENSMUSG00000106168	MGI:5663675	lncRNA gene	predicted gene 43538
3	gene	38.66361	38.70922	positive	MGI_C57BL6J_5589038	Gm29879	NCBI_Gene:102631576	MGI:5589038	lncRNA gene	predicted gene, 29879
3	gene	38.76048	38.76195	negative	MGI_C57BL6J_5589118	Gm29959	NCBI_Gene:102631683	MGI:5589118	lncRNA gene	predicted gene, 29959
3	gene	38.87457	38.88826	negative	MGI_C57BL6J_2441892	C230034O21Rik	NCBI_Gene:102632538,ENSEMBL:ENSMUSG00000086181	MGI:2441892	lncRNA gene	RIKEN cDNA C230034O21 gene
3	gene	38.88563	39.01199	positive	MGI_C57BL6J_3045256	Fat4	NCBI_Gene:329628,ENSEMBL:ENSMUSG00000046743	MGI:3045256	protein coding gene	FAT atypical cadherin 4
3	gene	39.00860	39.00968	negative	MGI_C57BL6J_5663676	Gm43539	ENSEMBL:ENSMUSG00000105910	MGI:5663676	lncRNA gene	predicted gene 43539
3	pseudogene	39.12853	39.12891	negative	MGI_C57BL6J_5663445	Gm43308	ENSEMBL:ENSMUSG00000104792	MGI:5663445	pseudogene	predicted gene 43308
3	gene	39.15083	39.15967	negative	MGI_C57BL6J_5589170	Gm30011	NCBI_Gene:102631750	MGI:5589170	lncRNA gene	predicted gene, 30011
3	pseudogene	39.21756	39.21785	negative	MGI_C57BL6J_5663145	Gm43008	ENSEMBL:ENSMUSG00000107333	MGI:5663145	pseudogene	predicted gene 43008
3	gene	39.27713	39.30593	positive	MGI_C57BL6J_5625099	Gm42214	NCBI_Gene:105247032	MGI:5625099	lncRNA gene	predicted gene, 42214
3	pseudogene	39.35737	39.35913	negative	MGI_C57BL6J_3704215	Gm9845	NCBI_Gene:100040853,ENSEMBL:ENSMUSG00000050533	MGI:3704215	pseudogene	predicted pseudogene 9845
3	pseudogene	39.44389	39.44435	positive	MGI_C57BL6J_5295673	Gm20566	NCBI_Gene:100047050	MGI:5295673	pseudogene	predicted gene, 20566
3	gene	39.46078	39.59865	positive	MGI_C57BL6J_5589222	Gm30063	NCBI_Gene:102631823	MGI:5589222	lncRNA gene	predicted gene, 30063
3	gene	39.52552	39.53415	negative	MGI_C57BL6J_5625100	Gm42215	NCBI_Gene:105247033	MGI:5625100	lncRNA gene	predicted gene, 42215
3	gene	39.63596	39.63608	negative	MGI_C57BL6J_4422060	n-R5s195	ENSEMBL:ENSMUSG00000093952	MGI:4422060	rRNA gene	nuclear encoded rRNA 5S 195
3	gene	39.63606	39.63878	positive	MGI_C57BL6J_5662918	Gm42781	ENSEMBL:ENSMUSG00000106786	MGI:5662918	unclassified gene	predicted gene 42781
3	gene	39.66629	39.66645	positive	MGI_C57BL6J_5453573	Gm23796	ENSEMBL:ENSMUSG00000065945	MGI:5453573	snRNA gene	predicted gene, 23796
3	gene	39.71315	39.72565	positive	MGI_C57BL6J_5826471	Gm46834	NCBI_Gene:108168914	MGI:5826471	lncRNA gene	predicted gene, 46834

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	46.28983	46.28996	positive	MGI_C57BL6J_5455858	Gm26081	ENSEMBL:ENSMUSG00000077256	MGI:5455858	snoRNA gene	predicted gene, 26081
3	pseudogene	46.41340	46.41412	positive	MGI_C57BL6J_5011028	Gm18843	NCBI_Gene:100417811,ENSEMBL:ENSMUSG00000104511	MGI:5011028	pseudogene	predicted gene, 18843
3	gene	46.44085	46.44822	negative	MGI_C57BL6J_3643087	Pabpc4l	NCBI_Gene:241989,ENSEMBL:ENSMUSG00000090919	MGI:3643087	protein coding gene	poly(A) binding protein, cytoplasmic 4-like
3	pseudogene	46.62112	46.62136	positive	MGI_C57BL6J_5610673	Gm37445	ENSEMBL:ENSMUSG00000102589	MGI:5610673	pseudogene	predicted gene, 37445

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	pseudogene	47.45961	47.46034	negative	MGI_C57BL6J_3780399	Gm2229	NCBI_Gene:100039426,ENSEMBL:ENSMUSG00000103798	MGI:3780399	pseudogene	predicted gene 2229
3	pseudogene	48.02601	48.02676	negative	MGI_C57BL6J_3648898	Gm7977	NCBI_Gene:666202,ENSEMBL:ENSMUSG00000103257	MGI:3648898	pseudogene	predicted gene 7977
3	gene	48.07834	48.07845	positive	MGI_C57BL6J_5610523	Gm37295	ENSEMBL:ENSMUSG00000104110	MGI:5610523	unclassified gene	predicted gene, 37295
3	gene	48.54642	48.57947	positive	MGI_C57BL6J_5826472	Gm46835	NCBI_Gene:108168915	MGI:5826472	lncRNA gene	predicted gene, 46835
3	gene	48.60573	48.60910	negative	MGI_C57BL6J_1913582	1700018B24Rik	NCBI_Gene:66332,ENSEMBL:ENSMUSG00000037910	MGI:1913582	lncRNA gene	RIKEN cDNA 1700018B24 gene
3	gene	48.74851	48.76095	negative	MGI_C57BL6J_5610418	Gm37190	ENSEMBL:ENSMUSG00000102181	MGI:5610418	lncRNA gene	predicted gene, 37190

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	48.95472	48.95488	positive	MGI_C57BL6J_5453288	Gm23511	ENSEMBL:ENSMUSG00000065018	MGI:5453288	snRNA gene	predicted gene, 23511
3	gene	49.06237	49.09636	positive	MGI_C57BL6J_5590574	Gm31415	NCBI_Gene:102633632,ENSEMBL:ENSMUSG00000102263	MGI:5590574	lncRNA gene	predicted gene, 31415
3	gene	49.13746	49.13853	positive	MGI_C57BL6J_5611047	Gm37819	ENSEMBL:ENSMUSG00000104186	MGI:5611047	unclassified gene	predicted gene, 37819
3	pseudogene	49.20771	49.20807	negative	MGI_C57BL6J_5610912	Gm37684	ENSEMBL:ENSMUSG00000103027	MGI:5610912	pseudogene	predicted gene, 37684
3	gene	49.32568	49.36736	positive	MGI_C57BL6J_5295664	Gm20557	NCBI_Gene:329633,ENSEMBL:ENSMUSG00000102679	MGI:5295664	lncRNA gene	predicted gene, 20557
3	pseudogene	49.38115	49.38285	negative	MGI_C57BL6J_3643624	Gm5846	NCBI_Gene:545519,ENSEMBL:ENSMUSG00000104309	MGI:3643624	pseudogene	predicted gene 5846
3	pseudogene	49.40082	49.46744	negative	MGI_C57BL6J_3780091	Gm9683	NCBI_Gene:676568	MGI:3780091	pseudogene	predicted gene 9683
3	gene	49.49135	49.49148	positive	MGI_C57BL6J_5452257	Gm22480	ENSEMBL:ENSMUSG00000084517	MGI:5452257	snoRNA gene	predicted gene, 22480
3	pseudogene	49.53075	49.53131	positive	MGI_C57BL6J_5610652	Gm37424	ENSEMBL:ENSMUSG00000104437	MGI:5610652	pseudogene	predicted gene, 37424
3	pseudogene	49.60356	49.60388	positive	MGI_C57BL6J_5611489	Gm38261	ENSEMBL:ENSMUSG00000102731	MGI:5611489	pseudogene	predicted gene, 38261
3	pseudogene	49.60423	49.60447	positive	MGI_C57BL6J_5611316	Gm38088	ENSEMBL:ENSMUSG00000103249	MGI:5611316	pseudogene	predicted gene, 38088
3	pseudogene	49.63244	49.63297	negative	MGI_C57BL6J_3780498	Gm2328	NCBI_Gene:100039587,ENSEMBL:ENSMUSG00000104134	MGI:3780498	pseudogene	predicted gene 2328
3	pseudogene	49.64348	49.64413	positive	MGI_C57BL6J_5588900	Gm29741	NCBI_Gene:101055903,ENSEMBL:ENSMUSG00000103568	MGI:5588900	pseudogene	predicted gene, 29741
3	gene	49.65876	49.65887	positive	MGI_C57BL6J_5452873	Gm23096	ENSEMBL:ENSMUSG00000065381	MGI:5452873	snRNA gene	predicted gene, 23096
3	gene	49.74329	49.75738	negative	MGI_C57BL6J_1920423	Pcdh18	NCBI_Gene:73173,ENSEMBL:ENSMUSG00000037892	MGI:1920423	protein coding gene	protocadherin 18
3	pseudogene	49.78043	49.78089	negative	MGI_C57BL6J_5610778	Gm37550	ENSEMBL:ENSMUSG00000102943	MGI:5610778	pseudogene	predicted gene, 37550
3	gene	49.89253	50.49909	negative	MGI_C57BL6J_1347355	Slc7a11	NCBI_Gene:26570,ENSEMBL:ENSMUSG00000027737	MGI:1347355	protein coding gene	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
3	gene	50.00197	50.01078	positive	MGI_C57BL6J_5611082	Gm37854	ENSEMBL:ENSMUSG00000102892	MGI:5611082	lncRNA gene	predicted gene, 37854
3	gene	50.01177	50.02624	negative	MGI_C57BL6J_5622927	Gm40042	NCBI_Gene:105244434	MGI:5622927	lncRNA gene	predicted gene, 40042
3	pseudogene	50.02967	50.02999	positive	MGI_C57BL6J_5611054	Gm37826	ENSEMBL:ENSMUSG00000104457	MGI:5611054	pseudogene	predicted gene, 37826
3	pseudogene	50.16666	50.16689	negative	MGI_C57BL6J_5610920	Gm37692	ENSEMBL:ENSMUSG00000104349	MGI:5610920	pseudogene	predicted gene, 37692
3	pseudogene	50.25485	50.25544	positive	MGI_C57BL6J_3780515	Gm2345	NCBI_Gene:100039628,ENSEMBL:ENSMUSG00000102167	MGI:3780515	pseudogene	predicted gene 2345
3	gene	50.40028	50.40428	negative	MGI_C57BL6J_5610726	Gm37498	ENSEMBL:ENSMUSG00000103907	MGI:5610726	unclassified gene	predicted gene, 37498
3	gene	50.51640	50.60731	negative	MGI_C57BL6J_3643374	Gm6209	NCBI_Gene:621304,ENSEMBL:ENSMUSG00000102715	MGI:3643374	lncRNA gene	predicted gene 6209
3	gene	50.57519	50.57652	negative	MGI_C57BL6J_1923259	5830415G21Rik	ENSEMBL:ENSMUSG00000102895	MGI:1923259	unclassified gene	RIKEN cDNA 5830415G21 gene
3	pseudogene	50.59799	50.59850	negative	MGI_C57BL6J_5611465	Gm38237	NCBI_Gene:108168851,ENSEMBL:ENSMUSG00000103745	MGI:5611465	pseudogene	predicted gene, 38237
3	gene	50.62435	50.62841	negative	MGI_C57BL6J_5610427	Gm37199	ENSEMBL:ENSMUSG00000104068	MGI:5610427	unclassified gene	predicted gene, 37199
3	gene	50.67970	50.68340	negative	MGI_C57BL6J_5610689	Gm37461	ENSEMBL:ENSMUSG00000104281	MGI:5610689	unclassified gene	predicted gene, 37461
3	gene	50.70690	50.71189	negative	MGI_C57BL6J_5622928	Gm40043	NCBI_Gene:105244435	MGI:5622928	lncRNA gene	predicted gene, 40043
3	gene	50.83858	50.83872	negative	MGI_C57BL6J_5454280	Gm24503	ENSEMBL:ENSMUSG00000089079	MGI:5454280	snoRNA gene	predicted gene, 24503
3	gene	50.88324	50.88889	negative	MGI_C57BL6J_5610776	Gm37548	NCBI_Gene:105244436,ENSEMBL:ENSMUSG00000103012	MGI:5610776	lncRNA gene	predicted gene, 37548
3	gene	50.91889	50.92153	negative	MGI_C57BL6J_5611071	Gm37843	ENSEMBL:ENSMUSG00000102614	MGI:5611071	unclassified gene	predicted gene, 37843
3	gene	50.96656	50.96677	positive	MGI_C57BL6J_2139603	AA672641	NA	NA	unclassified gene	expressed sequence AA672641
3	gene	50.97754	50.97881	negative	MGI_C57BL6J_5610437	Gm37209	ENSEMBL:ENSMUSG00000103652	MGI:5610437	unclassified gene	predicted gene, 37209
3	gene	51.03335	51.04284	negative	MGI_C57BL6J_5594915	Gm35756	NCBI_Gene:102639442	MGI:5594915	lncRNA gene	predicted gene, 35756
3	gene	51.05891	51.08934	negative	MGI_C57BL6J_5579936	Gm29230	NCBI_Gene:102639521,ENSEMBL:ENSMUSG00000102067	MGI:5579936	lncRNA gene	predicted gene 29230
3	gene	51.10366	51.10517	positive	MGI_C57BL6J_5611474	Gm38246	ENSEMBL:ENSMUSG00000103464	MGI:5611474	lncRNA gene	predicted gene, 38246
3	gene	51.12669	51.12894	negative	MGI_C57BL6J_5595050	Gm35891	NCBI_Gene:102639626	MGI:5595050	lncRNA gene	predicted gene, 35891
3	gene	51.21847	51.22033	negative	MGI_C57BL6J_5622929	Gm40044	NCBI_Gene:105244437	MGI:5622929	lncRNA gene	predicted gene, 40044
3	gene	51.22445	51.25165	positive	MGI_C57BL6J_109382	Noct	NCBI_Gene:12457,ENSEMBL:ENSMUSG00000023087	MGI:109382	protein coding gene	nocturnin
3	gene	51.23192	51.23438	positive	MGI_C57BL6J_5611585	Gm38357	ENSEMBL:ENSMUSG00000103313	MGI:5611585	unclassified gene	predicted gene, 38357

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	51.51099	51.51430	positive	MGI_C57BL6J_5595167	Gm36008	NCBI_Gene:102639777	MGI:5595167	lncRNA gene	predicted gene, 36008
3	gene	51.51532	51.56088	negative	MGI_C57BL6J_1920501	Setd7	NCBI_Gene:73251,ENSEMBL:ENSMUSG00000037111	MGI:1920501	protein coding gene	SET domain containing (lysine methyltransferase) 7
3	gene	51.55754	51.55965	negative	MGI_C57BL6J_5611428	Gm38200	ENSEMBL:ENSMUSG00000102466	MGI:5611428	unclassified gene	predicted gene, 38200
3	gene	51.55976	51.56712	positive	MGI_C57BL6J_1923230	5031434O11Rik	NCBI_Gene:100039684,ENSEMBL:ENSMUSG00000097885	MGI:1923230	lncRNA gene	RIKEN cDNA 5031434O11 gene
3	pseudogene	51.57111	51.57142	negative	MGI_C57BL6J_5611562	Gm38334	ENSEMBL:ENSMUSG00000104001	MGI:5611562	pseudogene	predicted gene, 38334
3	gene	51.58231	51.58285	positive	MGI_C57BL6J_1918620	5430433H01Rik	ENSEMBL:ENSMUSG00000104075	MGI:1918620	unclassified gene	RIKEN cDNA 5430433H01 gene
3	pseudogene	51.63649	51.63705	negative	MGI_C57BL6J_5611475	Gm38247	NCBI_Gene:108168852,ENSEMBL:ENSMUSG00000104166	MGI:5611475	pseudogene	predicted gene, 38247
3	gene	51.66036	51.68268	positive	MGI_C57BL6J_2448481	Mgst2	NCBI_Gene:211666,ENSEMBL:ENSMUSG00000074604	MGI:2448481	protein coding gene	microsomal glutathione S-transferase 2
3	gene	51.67280	51.67390	positive	MGI_C57BL6J_5610489	Gm37261	ENSEMBL:ENSMUSG00000103527	MGI:5610489	unclassified gene	predicted gene, 37261
3	gene	51.68591	52.10509	negative	MGI_C57BL6J_2389461	Maml3	NCBI_Gene:433586,ENSEMBL:ENSMUSG00000061143	MGI:2389461	protein coding gene	mastermind like transcriptional coactivator 3
3	gene	51.69372	51.69509	positive	MGI_C57BL6J_3642905	Gm10729	ENSEMBL:ENSMUSG00000074603	MGI:3642905	protein coding gene	predicted gene 10729
3	gene	51.70772	51.71225	positive	MGI_C57BL6J_5826440	Gm46803	NCBI_Gene:108168869	MGI:5826440	lncRNA gene	predicted gene, 46803
3	gene	51.75712	51.76209	negative	MGI_C57BL6J_5610570	Gm37342	ENSEMBL:ENSMUSG00000102732	MGI:5610570	unclassified gene	predicted gene, 37342
3	gene	51.81295	51.81931	positive	MGI_C57BL6J_5610457	Gm37229	ENSEMBL:ENSMUSG00000102539	MGI:5610457	lncRNA gene	predicted gene, 37229
3	gene	51.82891	51.82903	positive	MGI_C57BL6J_4422061	n-R5s196	ENSEMBL:ENSMUSG00000065070	MGI:4422061	rRNA gene	nuclear encoded rRNA 5S 196
3	gene	51.82939	51.83040	negative	MGI_C57BL6J_1920491	3110080O07Rik	ENSEMBL:ENSMUSG00000103284	MGI:1920491	unclassified gene	RIKEN cDNA 3110080O07 gene
3	gene	51.86735	51.86856	negative	MGI_C57BL6J_5611228	Gm38000	ENSEMBL:ENSMUSG00000103484	MGI:5611228	unclassified gene	predicted gene, 38000
3	gene	51.87299	51.87584	negative	MGI_C57BL6J_5610903	Gm37675	ENSEMBL:ENSMUSG00000102620	MGI:5610903	unclassified gene	predicted gene, 37675
3	gene	51.88428	51.88689	negative	MGI_C57BL6J_5611480	Gm38252	ENSEMBL:ENSMUSG00000102786	MGI:5611480	unclassified gene	predicted gene, 38252
3	pseudogene	51.90699	51.90882	negative	MGI_C57BL6J_3708672	Gm10728	ENSEMBL:ENSMUSG00000103701	MGI:3708672	pseudogene	predicted gene 10728
3	gene	51.98094	51.99007	positive	MGI_C57BL6J_5012274	Gm20089	ENSEMBL:ENSMUSG00000104161	MGI:5012274	lncRNA gene	predicted gene, 20089
3	gene	51.98763	51.98985	negative	MGI_C57BL6J_5611283	Gm38055	ENSEMBL:ENSMUSG00000102147	MGI:5611283	unclassified gene	predicted gene, 38055
3	gene	51.99134	51.99196	negative	MGI_C57BL6J_5610754	Gm37526	ENSEMBL:ENSMUSG00000103784	MGI:5610754	unclassified gene	predicted gene, 37526
3	gene	52.00074	52.00402	negative	MGI_C57BL6J_5610693	Gm37465	ENSEMBL:ENSMUSG00000102423	MGI:5610693	unclassified gene	predicted gene, 37465
3	gene	52.05729	52.06424	negative	MGI_C57BL6J_2444420	C130089K02Rik	ENSEMBL:ENSMUSG00000104339	MGI:2444420	unclassified gene	RIKEN cDNA C130089K02 gene
3	gene	52.07159	52.07339	negative	MGI_C57BL6J_1921741	5430420F09Rik	ENSEMBL:ENSMUSG00000102808	MGI:1921741	unclassified gene	RIKEN cDNA 5430420F09 gene
3	gene	52.13405	52.22200	negative	MGI_C57BL6J_5610430	Gm37202	ENSEMBL:ENSMUSG00000103655	MGI:5610430	lncRNA gene	predicted gene, 37202
3	gene	52.17108	52.18013	negative	MGI_C57BL6J_5589233	Gm30074	NCBI_Gene:102631843,ENSEMBL:ENSMUSG00000103726	MGI:5589233	lncRNA gene	predicted gene, 30074
3	gene	52.18657	52.18796	positive	MGI_C57BL6J_5611360	Gm38132	ENSEMBL:ENSMUSG00000104055	MGI:5611360	lncRNA gene	predicted gene, 38132
3	gene	52.19825	52.20049	positive	MGI_C57BL6J_5610398	Gm37170	ENSEMBL:ENSMUSG00000103170	MGI:5610398	lncRNA gene	predicted gene, 37170
3	pseudogene	52.23684	52.24694	negative	MGI_C57BL6J_3031232	Olfr1398-ps1	NCBI_Gene:404507,ENSEMBL:ENSMUSG00000102510	MGI:3031232	pseudogene	olfactory receptor 1398, pseudogene 1
3	gene	52.23745	52.25650	positive	MGI_C57BL6J_5589284	Gm30125	NCBI_Gene:102631910	MGI:5589284	lncRNA gene	predicted gene, 30125
3	gene	52.26834	52.35322	positive	MGI_C57BL6J_1890077	Foxo1	NCBI_Gene:56458,ENSEMBL:ENSMUSG00000044167	MGI:1890077	protein coding gene	forkhead box O1
3	gene	52.26843	52.26944	negative	MGI_C57BL6J_5141867	Gm20402	ENSEMBL:ENSMUSG00000092405	MGI:5141867	lncRNA gene	predicted gene 20402
3	gene	52.28224	52.28431	positive	MGI_C57BL6J_5611262	Gm38034	ENSEMBL:ENSMUSG00000102844	MGI:5611262	unclassified gene	predicted gene, 38034

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	52.46717	52.49327	positive	MGI_C57BL6J_5621422	Gm38537	NCBI_Gene:102641152	MGI:5621422	lncRNA gene	predicted gene, 38537
3	gene	52.50277	52.55022	positive	MGI_C57BL6J_5589332	Gm30173	NCBI_Gene:102631981,ENSEMBL:ENSMUSG00000103965	MGI:5589332	lncRNA gene	predicted gene, 30173
3	gene	52.58013	52.58907	positive	MGI_C57BL6J_5622932	Gm40047	NCBI_Gene:105244440	MGI:5622932	lncRNA gene	predicted gene, 40047
3	pseudogene	52.61282	52.61402	positive	MGI_C57BL6J_3704216	Gm10293	NCBI_Gene:100039762,ENSEMBL:ENSMUSG00000070490	MGI:3704216	pseudogene	predicted pseudogene 10293
3	gene	52.64989	52.70971	positive	MGI_C57BL6J_5589394	Gm30235	NCBI_Gene:102632062	MGI:5589394	lncRNA gene	predicted gene, 30235
3	gene	52.72265	52.72275	negative	MGI_C57BL6J_5452575	Gm22798	ENSEMBL:ENSMUSG00000065926	MGI:5452575	snRNA gene	predicted gene, 22798
3	gene	52.73972	52.77666	positive	MGI_C57BL6J_3780614	Gm2447	NCBI_Gene:329639,ENSEMBL:ENSMUSG00000102785	MGI:3780614	lncRNA gene	predicted gene 2447
3	gene	52.78900	52.79781	negative	MGI_C57BL6J_5589451	Gm30292	NCBI_Gene:102632139,ENSEMBL:ENSMUSG00000104109	MGI:5589451	lncRNA gene	predicted gene, 30292
3	gene	52.90676	52.92767	negative	MGI_C57BL6J_5434106	Gm20750	NCBI_Gene:622124,ENSEMBL:ENSMUSG00000104401	MGI:5434106	lncRNA gene	predicted gene, 20750
3	gene	52.93325	52.95628	positive	MGI_C57BL6J_5589510	Gm30351	NCBI_Gene:102632211	MGI:5589510	lncRNA gene	predicted gene, 30351
3	gene	52.95618	52.95789	negative	MGI_C57BL6J_5589561	Gm30402	NCBI_Gene:102632287	MGI:5589561	lncRNA gene	predicted gene, 30402
3	pseudogene	52.96005	52.96037	negative	MGI_C57BL6J_5610235	Gm37007	ENSEMBL:ENSMUSG00000103886	MGI:5610235	pseudogene	predicted gene, 37007
3	gene	52.98188	53.01724	negative	MGI_C57BL6J_1914792	Cog6	NCBI_Gene:67542,ENSEMBL:ENSMUSG00000027742	MGI:1914792	protein coding gene	component of oligomeric golgi complex 6
3	gene	53.03858	53.04176	negative	MGI_C57BL6J_5663038	Gm42901	ENSEMBL:ENSMUSG00000104850	MGI:5663038	lncRNA gene	predicted gene 42901
3	gene	53.04153	53.26168	positive	MGI_C57BL6J_1920048	Lhfp	NCBI_Gene:108927,ENSEMBL:ENSMUSG00000048332	MGI:1920048	protein coding gene	lipoma HMGIC fusion partner
3	gene	53.07216	53.07524	negative	MGI_C57BL6J_5663035	Gm42898	ENSEMBL:ENSMUSG00000104828	MGI:5663035	unclassified gene	predicted gene 42898
3	gene	53.08322	53.08588	positive	MGI_C57BL6J_5663036	Gm42899	ENSEMBL:ENSMUSG00000104687	MGI:5663036	unclassified gene	predicted gene 42899
3	gene	53.09900	53.10318	positive	MGI_C57BL6J_2443940	C130075A20Rik	ENSEMBL:ENSMUSG00000104735	MGI:2443940	unclassified gene	RIKEN cDNA C130075A20 gene
3	gene	53.10967	53.11012	positive	MGI_C57BL6J_5663941	Gm43804	ENSEMBL:ENSMUSG00000104615	MGI:5663941	unclassified gene	predicted gene 43804
3	gene	53.11040	53.11341	negative	MGI_C57BL6J_5663940	Gm43803	ENSEMBL:ENSMUSG00000104968	MGI:5663940	lncRNA gene	predicted gene 43803
3	gene	53.11217	53.11299	positive	MGI_C57BL6J_5663942	Gm43805	ENSEMBL:ENSMUSG00000105971	MGI:5663942	unclassified gene	predicted gene 43805
3	pseudogene	53.34649	53.34723	negative	MGI_C57BL6J_5663609	Gm43472	ENSEMBL:ENSMUSG00000106660	MGI:5663609	pseudogene	predicted gene 43472
3	gene	53.39575	53.39850	positive	MGI_C57BL6J_5622933	Gm40048	NCBI_Gene:105244441	MGI:5622933	lncRNA gene	predicted gene, 40048
3	pseudogene	53.40161	53.42457	negative	MGI_C57BL6J_5663608	Gm43471	NCBI_Gene:108168853,ENSEMBL:ENSMUSG00000105397	MGI:5663608	pseudogene	predicted gene 43471
3	gene	53.44858	53.46333	negative	MGI_C57BL6J_2444520	Nhlrc3	NCBI_Gene:212114,ENSEMBL:ENSMUSG00000042997	MGI:2444520	protein coding gene	NHL repeat containing 3
3	gene	53.45262	53.45805	positive	MGI_C57BL6J_3801870	Gm16206	NCBI_Gene:102632669,ENSEMBL:ENSMUSG00000085174	MGI:3801870	lncRNA gene	predicted gene 16206
3	gene	53.46367	53.48175	positive	MGI_C57BL6J_1919933	Proser1	NCBI_Gene:212127,ENSEMBL:ENSMUSG00000049504	MGI:1919933	protein coding gene	proline and serine rich 1
3	gene	53.48865	53.50850	positive	MGI_C57BL6J_2388072	Stoml3	NCBI_Gene:229277,ENSEMBL:ENSMUSG00000027744	MGI:2388072	protein coding gene	stomatin (Epb7.2)-like 3
3	gene	53.50893	53.51010	positive	MGI_C57BL6J_1924132	6430500D05Rik	ENSEMBL:ENSMUSG00000105481	MGI:1924132	unclassified gene	RIKEN cDNA 6430500D05 gene
3	gene	53.51200	53.51213	positive	MGI_C57BL6J_5453452	Gm23675	ENSEMBL:ENSMUSG00000087936	MGI:5453452	snoRNA gene	predicted gene, 23675
3	gene	53.51394	53.65736	negative	MGI_C57BL6J_2444465	Frem2	NCBI_Gene:242022,ENSEMBL:ENSMUSG00000037016	MGI:2444465	protein coding gene	Fras1 related extracellular matrix protein 2
3	pseudogene	53.66666	53.66739	negative	MGI_C57BL6J_3648425	Gm6073	NCBI_Gene:606547,ENSEMBL:ENSMUSG00000105840	MGI:3648425	pseudogene	predicted gene 6073
3	pseudogene	53.69237	53.69292	negative	MGI_C57BL6J_3649038	Gm6204	NCBI_Gene:621155,ENSEMBL:ENSMUSG00000105879	MGI:3649038	pseudogene	predicted gene 6204
3	gene	53.70304	53.73576	positive	MGI_C57BL6J_5589894	Gm30735	NCBI_Gene:102632743,ENSEMBL:ENSMUSG00000105168	MGI:5589894	lncRNA gene	predicted gene, 30735
3	gene	53.73622	53.73783	positive	MGI_C57BL6J_3642187	Gm10727	ENSEMBL:ENSMUSG00000105444	MGI:3642187	unclassified gene	predicted gene 10727
3	gene	53.75673	53.77295	positive	MGI_C57BL6J_2443105	C820005J03Rik	ENSEMBL:ENSMUSG00000106270	MGI:2443105	lncRNA gene	RIKEN cDNA C820005J03 gene
3	gene	53.84341	53.84351	positive	MGI_C57BL6J_5454628	Gm24851	ENSEMBL:ENSMUSG00000088653	MGI:5454628	snRNA gene	predicted gene, 24851
3	gene	53.84509	53.84528	positive	MGI_C57BL6J_3779200	Gm10985	ENSEMBL:ENSMUSG00000078742	MGI:3779200	protein coding gene	predicted gene 10985
3	gene	53.85338	53.86383	negative	MGI_C57BL6J_1915140	Ufm1	NCBI_Gene:67890,ENSEMBL:ENSMUSG00000027746	MGI:1915140	protein coding gene	ubiquitin-fold modifier 1
3	gene	53.92484	53.94353	positive	MGI_C57BL6J_5590185	Gm31026	NCBI_Gene:102633119,ENSEMBL:ENSMUSG00000106577	MGI:5590185	lncRNA gene	predicted gene, 31026
3	pseudogene	54.02115	54.02195	positive	MGI_C57BL6J_3645533	Gm8109	NCBI_Gene:666444,ENSEMBL:ENSMUSG00000103155	MGI:3645533	pseudogene	predicted gene 8109
3	pseudogene	54.02988	54.03041	positive	MGI_C57BL6J_5010203	Gm18018	NCBI_Gene:100416282,ENSEMBL:ENSMUSG00000105067	MGI:5010203	pseudogene	predicted gene, 18018
3	gene	54.15604	54.31847	positive	MGI_C57BL6J_109525	Trpc4	NCBI_Gene:22066,ENSEMBL:ENSMUSG00000027748	MGI:109525	protein coding gene	transient receptor potential cation channel, subfamily C, member 4
3	gene	54.35927	54.39104	positive	MGI_C57BL6J_1926321	Postn	NCBI_Gene:50706,ENSEMBL:ENSMUSG00000027750	MGI:1926321	protein coding gene	periostin, osteoblast specific factor
3	gene	54.35966	54.36101	negative	MGI_C57BL6J_5590254	Gm31095	NCBI_Gene:102633208	MGI:5590254	lncRNA gene	predicted gene, 31095
3	pseudogene	54.48141	54.48293	positive	MGI_C57BL6J_3645731	Gm5641	NCBI_Gene:434807,ENSEMBL:ENSMUSG00000069014	MGI:3645731	pseudogene	predicted gene 5641
3	gene	54.48856	54.53489	negative	MGI_C57BL6J_5590313	Gm31154	NCBI_Gene:102633293	MGI:5590313	lncRNA gene	predicted gene, 31154
3	gene	54.59055	54.60139	negative	MGI_C57BL6J_5622935	Gm40050	NCBI_Gene:105244443	MGI:5622935	lncRNA gene	predicted gene, 40050
3	gene	54.63144	54.63463	positive	MGI_C57BL6J_5477172	Gm26678	ENSEMBL:ENSMUSG00000097599	MGI:5477172	lncRNA gene	predicted gene, 26678
3	pseudogene	54.63288	54.63457	negative	MGI_C57BL6J_3588285	B020017C02Rik	NCBI_Gene:100503708,ENSEMBL:ENSMUSG00000104831	MGI:3588285	pseudogene	RIKEN cDNA B020017C02 gene
3	gene	54.69276	54.72877	positive	MGI_C57BL6J_1929651	Supt20	NCBI_Gene:56790,ENSEMBL:ENSMUSG00000027751	MGI:1929651	protein coding gene	SPT20 SAGA complex component
3	gene	54.71318	54.71435	negative	MGI_C57BL6J_5439427	Gm21958	ENSEMBL:ENSMUSG00000094487	MGI:5439427	protein coding gene	predicted gene, 21958
3	gene	54.72868	54.73539	negative	MGI_C57BL6J_1916889	Exosc8	NCBI_Gene:69639,ENSEMBL:ENSMUSG00000027752	MGI:1916889	protein coding gene	exosome component 8
3	gene	54.73554	54.75132	positive	MGI_C57BL6J_1913498	Alg5	NCBI_Gene:66248,ENSEMBL:ENSMUSG00000036632	MGI:1913498	protein coding gene	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)
3	gene	54.75545	54.80166	positive	MGI_C57BL6J_1859993	Smad9	NCBI_Gene:55994,ENSEMBL:ENSMUSG00000027796	MGI:1859993	protein coding gene	SMAD family member 9
3	gene	54.80311	54.80779	negative	MGI_C57BL6J_2180854	Rfxap	NCBI_Gene:170767,ENSEMBL:ENSMUSG00000036615	MGI:2180854	protein coding gene	regulatory factor X-associated protein
3	pseudogene	54.80997	54.81140	negative	MGI_C57BL6J_3708673	Gm10254	NCBI_Gene:545524,ENSEMBL:ENSMUSG00000069011	MGI:3708673	pseudogene	predicted gene 10254
3	gene	54.89707	54.91589	negative	MGI_C57BL6J_3607715	Sertm1	NCBI_Gene:329641,ENSEMBL:ENSMUSG00000056306	MGI:3607715	protein coding gene	serine rich and transmembrane domain containing 1
3	gene	54.91602	54.95326	positive	MGI_C57BL6J_5590517	Gm31358	NCBI_Gene:102633562	MGI:5590517	lncRNA gene	predicted gene, 31358
3	gene	55.04547	55.05550	negative	MGI_C57BL6J_108042	Ccna1	NCBI_Gene:12427,ENSEMBL:ENSMUSG00000027793	MGI:108042	protein coding gene	cyclin A1
3	gene	55.05524	55.08400	positive	MGI_C57BL6J_1918220	4931419H13Rik	NCBI_Gene:70970,ENSEMBL:ENSMUSG00000106589	MGI:1918220	lncRNA gene	RIKEN cDNA 4931419H13 gene
3	pseudogene	55.05735	55.05766	negative	MGI_C57BL6J_5663692	Gm43555	ENSEMBL:ENSMUSG00000105977	MGI:5663692	pseudogene	predicted gene 43555
3	gene	55.11207	55.13733	positive	MGI_C57BL6J_2139806	Spg20	NCBI_Gene:229285,ENSEMBL:ENSMUSG00000036580	MGI:2139806	protein coding gene	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
3	gene	55.13734	55.17525	positive	MGI_C57BL6J_2444356	Ccdc169	NCBI_Gene:320604,ENSEMBL:ENSMUSG00000048655	MGI:2444356	protein coding gene	coiled-coil domain containing 169
3	gene	55.16231	55.16243	negative	MGI_C57BL6J_5451806	Gm22029	ENSEMBL:ENSMUSG00000080590	MGI:5451806	miRNA gene	predicted gene, 22029
3	gene	55.18203	55.20996	positive	MGI_C57BL6J_1921684	Sohlh2	NCBI_Gene:74434,ENSEMBL:ENSMUSG00000027794	MGI:1921684	protein coding gene	spermatogenesis and oogenesis specific basic helix-loop-helix 2
3	gene	55.24236	55.53907	positive	MGI_C57BL6J_1330861	Dclk1	NCBI_Gene:13175,ENSEMBL:ENSMUSG00000027797	MGI:1330861	protein coding gene	doublecortin-like kinase 1
3	gene	55.29094	55.29194	positive	MGI_C57BL6J_1924494	9430012M22Rik	NA	NA	unclassified gene	RIKEN cDNA 9430012M22 gene
3	gene	55.30532	55.30542	positive	MGI_C57BL6J_5454909	Gm25132	ENSEMBL:ENSMUSG00000064586	MGI:5454909	snRNA gene	predicted gene, 25132
3	gene	55.33084	55.33297	positive	MGI_C57BL6J_5012002	Gm19817	ENSEMBL:ENSMUSG00000105302	MGI:5012002	unclassified gene	predicted gene, 19817
3	gene	55.35240	55.38079	negative	MGI_C57BL6J_5622936	Gm40051	NCBI_Gene:105244444	MGI:5622936	lncRNA gene	predicted gene, 40051
3	gene	55.37746	55.40312	negative	MGI_C57BL6J_5662746	Gm42609	ENSEMBL:ENSMUSG00000105975	MGI:5662746	lncRNA gene	predicted gene 42609
3	gene	55.39181	55.40420	negative	MGI_C57BL6J_3642047	Gm9831	NCBI_Gene:101056032	MGI:3642047	protein coding gene	predicted gene 9831
3	gene	55.46198	55.47221	negative	MGI_C57BL6J_5439423	Gm21954	ENSEMBL:ENSMUSG00000094962	MGI:5439423	protein coding gene	predicted gene, 21954
3	gene	55.47609	55.48162	negative	MGI_C57BL6J_5590602	Gm31443	NCBI_Gene:102633676	MGI:5590602	lncRNA gene	predicted gene, 31443
3	gene	55.48379	55.48718	positive	MGI_C57BL6J_5662744	Gm42607	ENSEMBL:ENSMUSG00000106354	MGI:5662744	unclassified gene	predicted gene 42607
3	gene	55.51757	55.51959	positive	MGI_C57BL6J_5662745	Gm42608	ENSEMBL:ENSMUSG00000106651	MGI:5662745	unclassified gene	predicted gene 42608
3	gene	55.54045	55.54338	negative	MGI_C57BL6J_5590955	Gm31796	NCBI_Gene:102634140	MGI:5590955	lncRNA gene	predicted gene, 31796
3	gene	55.54354	55.54855	positive	MGI_C57BL6J_5455181	Gm25404	NCBI_Gene:102634218,ENSEMBL:ENSMUSG00000064904	MGI:5455181	snRNA gene	predicted gene, 25404
3	gene	55.57492	55.57727	positive	MGI_C57BL6J_5663685	Gm43548	ENSEMBL:ENSMUSG00000105627	MGI:5663685	unclassified gene	predicted gene 43548
3	gene	55.57811	55.58273	negative	MGI_C57BL6J_5663686	Gm43549	NCBI_Gene:108168870,ENSEMBL:ENSMUSG00000106334	MGI:5663686	lncRNA gene	predicted gene 43549
3	gene	55.62519	56.18427	negative	MGI_C57BL6J_1347075	Nbea	NCBI_Gene:26422,ENSEMBL:ENSMUSG00000027799	MGI:1347075	protein coding gene	neurobeachin
3	gene	55.70589	55.71565	positive	MGI_C57BL6J_5826441	Gm46804	NCBI_Gene:108168871	MGI:5826441	lncRNA gene	predicted gene, 46804
3	gene	55.72593	55.72844	negative	MGI_C57BL6J_3609650	D430004P15Rik	NA	NA	unclassified gene	Riken cDNA D430004P15 gene
3	gene	55.77534	55.78795	negative	MGI_C57BL6J_3698047	9630024C22Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 9630024C22 gene
3	gene	55.78251	55.78529	positive	MGI_C57BL6J_1333773	Mab21l1	NCBI_Gene:17116,ENSEMBL:ENSMUSG00000056947	MGI:1333773	protein coding gene	mab-21-like 1
3	gene	55.83367	55.83446	negative	MGI_C57BL6J_1924979	6720451E02Rik	NA	NA	unclassified gene	RIKEN cDNA 6720451E02 gene
3	pseudogene	55.84710	55.84840	positive	MGI_C57BL6J_1918432	4933417G07Rik	NCBI_Gene:71182,ENSEMBL:ENSMUSG00000106572	MGI:1918432	pseudogene	RIKEN cDNA 4933417G07 gene
3	gene	55.85525	55.85615	negative	MGI_C57BL6J_1926125	B230206L23Rik	NA	NA	unclassified gene	RIKEN cDNA B230206L23 gene
3	gene	55.88327	56.00032	positive	MGI_C57BL6J_5591073	Gm31914	NCBI_Gene:102634293	MGI:5591073	lncRNA gene	predicted gene, 31914
3	gene	55.89031	55.93670	positive	MGI_C57BL6J_5663513	Gm43376	ENSEMBL:ENSMUSG00000104677	MGI:5663513	lncRNA gene	predicted gene 43376
3	gene	55.95678	55.95691	negative	MGI_C57BL6J_5452561	Gm22784	ENSEMBL:ENSMUSG00000077276	MGI:5452561	snoRNA gene	predicted gene, 22784
3	gene	56.01492	56.01717	negative	MGI_C57BL6J_5662977	Gm42840	ENSEMBL:ENSMUSG00000104938	MGI:5662977	unclassified gene	predicted gene 42840
3	gene	56.12316	56.12616	negative	MGI_C57BL6J_5662979	Gm42842	ENSEMBL:ENSMUSG00000106211	MGI:5662979	unclassified gene	predicted gene 42842
3	gene	56.12860	56.13053	negative	MGI_C57BL6J_5662978	Gm42841	ENSEMBL:ENSMUSG00000106528	MGI:5662978	unclassified gene	predicted gene 42841
3	gene	56.16395	56.16757	negative	MGI_C57BL6J_5662980	Gm42843	ENSEMBL:ENSMUSG00000105293	MGI:5662980	unclassified gene	predicted gene 42843
3	gene	56.21791	56.22124	negative	MGI_C57BL6J_5622937	Gm40052	NCBI_Gene:105244445	MGI:5622937	lncRNA gene	predicted gene, 40052
3	gene	56.25590	56.26994	negative	MGI_C57BL6J_5622938	Gm40053	NCBI_Gene:105244446	MGI:5622938	lncRNA gene	predicted gene, 40053
3	gene	56.34703	56.35755	negative	MGI_C57BL6J_5622939	Gm40054	NCBI_Gene:105244447	MGI:5622939	lncRNA gene	predicted gene, 40054
3	gene	56.35224	56.35230	positive	MGI_C57BL6J_102792	Mcptl	NA	NA	protein coding gene	mast cell protease-like
3	gene	56.43600	56.43875	negative	MGI_C57BL6J_5591336	Gm32177	NCBI_Gene:102634641	MGI:5591336	lncRNA gene	predicted gene, 32177
3	gene	56.44528	56.44541	negative	MGI_C57BL6J_5455504	Gm25727	ENSEMBL:ENSMUSG00000077710	MGI:5455504	snoRNA gene	predicted gene, 25727
3	gene	56.69842	56.70506	positive	MGI_C57BL6J_5591396	Gm32237	NCBI_Gene:102634719	MGI:5591396	lncRNA gene	predicted gene, 32237
3	pseudogene	56.82832	56.82884	negative	MGI_C57BL6J_3780790	Gm2622	NCBI_Gene:100040139,ENSEMBL:ENSMUSG00000105113	MGI:3780790	pseudogene	predicted gene 2622
3	gene	56.88806	56.89133	negative	MGI_C57BL6J_3588185	F830104G03Rik	NA	NA	unclassified gene	RIKEN cDNA F830104G03 gene
3	gene	57.05415	57.05428	positive	MGI_C57BL6J_5452046	Gm22269	ENSEMBL:ENSMUSG00000077190	MGI:5452046	snoRNA gene	predicted gene, 22269
3	pseudogene	57.13549	57.13683	negative	MGI_C57BL6J_3805962	Gm8177	NCBI_Gene:666585,ENSEMBL:ENSMUSG00000097366	MGI:3805962	pseudogene	predicted gene 8177
3	gene	57.22772	57.22918	negative	MGI_C57BL6J_1918389	4933408K01Rik	NA	NA	unclassified gene	RIKEN cDNA 4933408K01 gene
3	pseudogene	57.24925	57.24950	positive	MGI_C57BL6J_5663561	Gm43424	ENSEMBL:ENSMUSG00000106286	MGI:5663561	pseudogene	predicted gene 43424
3	pseudogene	57.27174	57.27237	negative	MGI_C57BL6J_5010845	Gm18660	NCBI_Gene:100417512,ENSEMBL:ENSMUSG00000104534	MGI:5010845	pseudogene	predicted gene, 18660
3	gene	57.28561	57.30199	negative	MGI_C57BL6J_104678	Tm4sf1	NCBI_Gene:17112,ENSEMBL:ENSMUSG00000027800	MGI:104678	protein coding gene	transmembrane 4 superfamily member 1
3	pseudogene	57.36225	57.36361	positive	MGI_C57BL6J_3646382	Gm5276	NCBI_Gene:383862,ENSEMBL:ENSMUSG00000105452	MGI:3646382	pseudogene	predicted gene 5276
3	gene	57.37929	57.39455	negative	MGI_C57BL6J_5591526	Gm32367	NCBI_Gene:102634892	MGI:5591526	lncRNA gene	predicted gene, 32367
3	gene	57.42531	57.44168	positive	MGI_C57BL6J_2385173	Tm4sf4	NCBI_Gene:229302,ENSEMBL:ENSMUSG00000027801	MGI:2385173	protein coding gene	transmembrane 4 superfamily member 4
3	gene	57.45564	57.57591	negative	MGI_C57BL6J_1917649	Wwtr1	NCBI_Gene:97064,ENSEMBL:ENSMUSG00000027803	MGI:1917649	protein coding gene	WW domain containing transcription regulator 1
3	pseudogene	57.52655	57.53048	positive	MGI_C57BL6J_3802068	Gm16016	NCBI_Gene:105244448,ENSEMBL:ENSMUSG00000083538	MGI:3802068	pseudogene	predicted gene 16016

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	57.95198	58.03171	negative	MGI_C57BL6J_5622940	Gm40055	NCBI_Gene:105244449,ENSEMBL:ENSMUSG00000105003	MGI:5622940	lncRNA gene	predicted gene, 40055
3	gene	58.07972	58.08183	positive	MGI_C57BL6J_5662650	Gm42513	ENSEMBL:ENSMUSG00000105065	MGI:5662650	unclassified gene	predicted gene 42513
3	gene	58.08960	58.16235	positive	MGI_C57BL6J_5622941	Gm40056	NCBI_Gene:105244450	MGI:5622941	lncRNA gene	predicted gene, 40056
3	pseudogene	58.10256	58.10430	negative	MGI_C57BL6J_3643179	Gm5537	NCBI_Gene:433594,ENSEMBL:ENSMUSG00000069008	MGI:3643179	pseudogene	predicted gene 5537
3	gene	58.11705	58.16762	positive	MGI_C57BL6J_1925506	4921539H07Rik	ENSEMBL:ENSMUSG00000104586	MGI:1925506	lncRNA gene	RIKEN cDNA 4921539H07 gene
3	gene	58.14171	58.16381	negative	MGI_C57BL6J_1915100	1700007F19Rik	NCBI_Gene:67850,ENSEMBL:ENSMUSG00000100666	MGI:1915100	lncRNA gene	RIKEN cDNA 1700007F19 gene
3	gene	58.21192	58.21337	positive	MGI_C57BL6J_5622942	Gm40057	NCBI_Gene:105244451	MGI:5622942	lncRNA gene	predicted gene, 40057
3	gene	58.29025	58.29036	negative	MGI_C57BL6J_5455943	Gm26166	ENSEMBL:ENSMUSG00000065722	MGI:5455943	snRNA gene	predicted gene, 26166
3	gene	58.30186	58.31762	positive	MGI_C57BL6J_5592006	Gm32847	NCBI_Gene:102635539	MGI:5592006	lncRNA gene	predicted gene, 32847
3	pseudogene	58.31494	58.31531	negative	MGI_C57BL6J_5663867	Gm43730	ENSEMBL:ENSMUSG00000106176	MGI:5663867	pseudogene	predicted gene 43730
3	pseudogene	58.40465	58.40512	positive	MGI_C57BL6J_5012313	Gm20128	NCBI_Gene:100504238,ENSEMBL:ENSMUSG00000105154	MGI:5012313	pseudogene	predicted gene, 20128
3	gene	58.41472	58.46679	positive	MGI_C57BL6J_1919283	Tsc22d2	NCBI_Gene:72033,ENSEMBL:ENSMUSG00000027806	MGI:1919283	protein coding gene	TSC22 domain family, member 2
3	gene	58.43268	58.43301	positive	MGI_C57BL6J_1338064	Gdap9	NA	NA	unclassified gene	ganglioside-induced differentiation-associated-protein 9
3	gene	58.51982	58.52589	negative	MGI_C57BL6J_92638	Serp1	NCBI_Gene:28146,ENSEMBL:ENSMUSG00000027808	MGI:92638	protein coding gene	stress-associated endoplasmic reticulum protein 1
3	gene	58.52582	58.55750	positive	MGI_C57BL6J_1098684	Eif2a	NCBI_Gene:229317,ENSEMBL:ENSMUSG00000027810	MGI:1098684	protein coding gene	eukaryotic translation initiation factor 2A
3	gene	58.52693	58.52812	positive	MGI_C57BL6J_1925148	6720482G16Rik	ENSEMBL:ENSMUSG00000106553	MGI:1925148	unclassified gene	RIKEN cDNA 6720482G16 gene
3	gene	58.57664	58.59354	positive	MGI_C57BL6J_1916477	Selenot	NCBI_Gene:69227,ENSEMBL:ENSMUSG00000075700	MGI:1916477	protein coding gene	selenoprotein T
3	gene	58.61630	58.63721	negative	MGI_C57BL6J_3588212	Erich6	NCBI_Gene:545527,ENSEMBL:ENSMUSG00000070471	MGI:3588212	protein coding gene	glutamate rich 6
3	gene	58.63671	58.63749	positive	MGI_C57BL6J_5826443	Gm46806	NCBI_Gene:108168873	MGI:5826443	lncRNA gene	predicted gene, 46806
3	pseudogene	58.65204	58.65404	positive	MGI_C57BL6J_3779790	Gm8234	NCBI_Gene:666680,ENSEMBL:ENSMUSG00000105021	MGI:3779790	pseudogene	predicted gene 8234
3	pseudogene	58.66547	58.66664	negative	MGI_C57BL6J_2139888	AU022133	NCBI_Gene:100417266,ENSEMBL:ENSMUSG00000105336	MGI:2139888	pseudogene	expressed sequence AU022133
3	gene	58.67494	58.69244	negative	MGI_C57BL6J_108062	Siah2	NCBI_Gene:20439,ENSEMBL:ENSMUSG00000036432	MGI:108062	protein coding gene	siah E3 ubiquitin protein ligase 2
3	gene	58.69259	58.79733	positive	MGI_C57BL6J_1923132	4930593A02Rik	NCBI_Gene:71301,ENSEMBL:ENSMUSG00000097725	MGI:1923132	lncRNA gene	RIKEN cDNA 4930593A02 gene
3	gene	58.69756	58.69867	positive	MGI_C57BL6J_1925070	A930028O11Rik	ENSEMBL:ENSMUSG00000105226	MGI:1925070	unclassified gene	RIKEN cDNA A930028O11 gene
3	pseudogene	58.76149	58.76275	negative	MGI_C57BL6J_5592251	Gm33092	NCBI_Gene:102635856	MGI:5592251	pseudogene	predicted gene, 33092
3	pseudogene	58.78841	58.82231	negative	MGI_C57BL6J_2140018	Mindy4b-ps	NCBI_Gene:100040293,ENSEMBL:ENSMUSG00000101860	MGI:2140018	pseudogene	MINDY lysine 48 deubiquitinase 4B, pseudogene
3	gene	58.82499	58.83590	positive	MGI_C57BL6J_5622944	Gm40059	NCBI_Gene:105244453	MGI:5622944	lncRNA gene	predicted gene, 40059
3	gene	58.84210	58.86675	positive	MGI_C57BL6J_5622945	Gm40060	NCBI_Gene:105244454	MGI:5622945	lncRNA gene	predicted gene, 40060
3	gene	58.84403	58.88534	negative	MGI_C57BL6J_2388124	Clrn1	NCBI_Gene:229320,ENSEMBL:ENSMUSG00000043850	MGI:2388124	protein coding gene	clarin 1
3	gene	58.97563	58.97573	positive	MGI_C57BL6J_5452268	Gm22491	ENSEMBL:ENSMUSG00000087815	MGI:5452268	snRNA gene	predicted gene, 22491
3	gene	58.97886	58.97903	negative	MGI_C57BL6J_5455349	Gm25572	ENSEMBL:ENSMUSG00000088152	MGI:5455349	snRNA gene	predicted gene, 25572
3	pseudogene	58.98713	58.98786	positive	MGI_C57BL6J_3642685	Rpl13-ps6	NCBI_Gene:100040416,ENSEMBL:ENSMUSG00000059776	MGI:3642685	pseudogene	ribosomal protein L13, pseudogene 6
3	gene	59.00162	59.00169	positive	MGI_C57BL6J_5531175	Gm27793	ENSEMBL:ENSMUSG00000099052	MGI:5531175	unclassified non-coding RNA gene	predicted gene, 27793
3	gene	59.00247	59.00616	negative	MGI_C57BL6J_5663707	Gm43570	ENSEMBL:ENSMUSG00000105945	MGI:5663707	lncRNA gene	predicted gene 43570
3	gene	59.00559	59.31868	positive	MGI_C57BL6J_2139916	Med12l	NCBI_Gene:329650,ENSEMBL:ENSMUSG00000056476	MGI:2139916	protein coding gene	mediator complex subunit 12-like
3	gene	59.09645	59.10182	negative	MGI_C57BL6J_2442043	Gpr171	NCBI_Gene:229323,ENSEMBL:ENSMUSG00000050075	MGI:2442043	protein coding gene	G protein-coupled receptor 171
3	gene	59.11386	59.15362	negative	MGI_C57BL6J_2155705	P2ry14	NCBI_Gene:140795,ENSEMBL:ENSMUSG00000036381	MGI:2155705	protein coding gene	purinergic receptor P2Y, G-protein coupled, 14
3	gene	59.14630	59.15363	negative	MGI_C57BL6J_2444074	F630111L10Rik	NCBI_Gene:320463	MGI:2444074	lncRNA gene	RIKEN cDNA F630111L10 gene
3	gene	59.17890	59.19547	negative	MGI_C57BL6J_1934133	Gpr87	NCBI_Gene:84111,ENSEMBL:ENSMUSG00000051431	MGI:1934133	protein coding gene	G protein-coupled receptor 87
3	gene	59.20789	59.21088	negative	MGI_C57BL6J_1921441	P2ry13	NCBI_Gene:74191,ENSEMBL:ENSMUSG00000036362	MGI:1921441	protein coding gene	purinergic receptor P2Y, G-protein coupled 13
3	gene	59.21627	59.26301	negative	MGI_C57BL6J_1918089	P2ry12	NCBI_Gene:70839,ENSEMBL:ENSMUSG00000036353	MGI:1918089	protein coding gene	purinergic receptor P2Y, G-protein coupled 12
3	gene	59.26979	59.27131	positive	MGI_C57BL6J_5663726	Gm43589	ENSEMBL:ENSMUSG00000104550	MGI:5663726	unclassified gene	predicted gene 43589
3	gene	59.31674	59.34444	negative	MGI_C57BL6J_1923481	Igsf10	NCBI_Gene:242050,ENSEMBL:ENSMUSG00000036334	MGI:1923481	protein coding gene	immunoglobulin superfamily, member 10
3	gene	59.34427	59.35117	positive	MGI_C57BL6J_5611414	Gm38186	ENSEMBL:ENSMUSG00000103668	MGI:5611414	lncRNA gene	predicted gene, 38186
3	pseudogene	59.42453	59.42476	positive	MGI_C57BL6J_5610943	Gm37715	ENSEMBL:ENSMUSG00000102247	MGI:5610943	pseudogene	predicted gene, 37715
3	pseudogene	59.43154	59.43335	positive	MGI_C57BL6J_3648019	Gm8276	NCBI_Gene:666756,ENSEMBL:ENSMUSG00000102550	MGI:3648019	pseudogene	predicted gene 8276
3	pseudogene	59.46967	59.47409	negative	MGI_C57BL6J_5611516	Gm38288	ENSEMBL:ENSMUSG00000103211	MGI:5611516	pseudogene	predicted gene, 38288
3	gene	59.47493	59.47500	negative	MGI_C57BL6J_4414092	n-TVcac1	NCBI_Gene:102467620	MGI:4414092	tRNA gene	nuclear encoded tRNA valine 1 (anticodon CAC)
3	pseudogene	59.48302	59.48329	positive	MGI_C57BL6J_5610999	Gm37771	ENSEMBL:ENSMUSG00000104038	MGI:5610999	pseudogene	predicted gene, 37771
3	pseudogene	59.50558	59.53523	negative	MGI_C57BL6J_3644725	Gm4856	NCBI_Gene:229330,ENSEMBL:ENSMUSG00000103598	MGI:3644725	pseudogene	predicted gene 4856
3	pseudogene	59.60245	59.63576	negative	MGI_C57BL6J_3644280	Gm5709	NCBI_Gene:435732,ENSEMBL:ENSMUSG00000095128	MGI:3644280	pseudogene	predicted gene 5709
3	gene	59.66286	59.66528	positive	MGI_C57BL6J_5611154	Gm37926	ENSEMBL:ENSMUSG00000102480	MGI:5611154	unclassified gene	predicted gene, 37926
3	gene	59.72979	59.75240	positive	MGI_C57BL6J_3779495	Aadacl2fm2	NCBI_Gene:433597,ENSEMBL:ENSMUSG00000090527	MGI:3779495	protein coding gene	AADACL2 family member 2
3	pseudogene	59.73675	59.73686	negative	MGI_C57BL6J_5611436	Gm38208	ENSEMBL:ENSMUSG00000104471	MGI:5611436	pseudogene	predicted gene, 38208
3	pseudogene	59.73718	59.73732	negative	MGI_C57BL6J_5610807	Gm37579	ENSEMBL:ENSMUSG00000102390	MGI:5610807	pseudogene	predicted gene, 37579
3	pseudogene	59.76721	59.76891	positive	MGI_C57BL6J_3644451	Gm5539	NCBI_Gene:433598,ENSEMBL:ENSMUSG00000103986	MGI:3644451	pseudogene	predicted gene 5539
3	gene	59.77781	59.84682	positive	MGI_C57BL6J_1921922	4930449A18Rik	ENSEMBL:ENSMUSG00000074589	MGI:1921922	protein coding gene	RIKEN cDNA 4930449A18 gene
3	pseudogene	59.78322	59.78863	negative	MGI_C57BL6J_3780925	Gm2756	NCBI_Gene:100040407,ENSEMBL:ENSMUSG00000102757	MGI:3780925	pseudogene	predicted gene 2756
3	gene	59.83837	59.84682	positive	MGI_C57BL6J_4361133	Gm16527	NCBI_Gene:669780	MGI:4361133	protein coding gene	predicted gene, 16527
3	gene	59.86105	59.87731	positive	MGI_C57BL6J_3643798	Aadacl2fm3	NCBI_Gene:666803,ENSEMBL:ENSMUSG00000095522	MGI:3643798	protein coding gene	AADACL2 family member 3
3	gene	59.92521	59.93795	positive	MGI_C57BL6J_3028051	Aadacl2fm1	NCBI_Gene:229333,ENSEMBL:ENSMUSG00000036951	MGI:3028051	protein coding gene	AADACL2 family member 1
3	pseudogene	59.95231	59.97359	positive	MGI_C57BL6J_3819177	Gm9696	NCBI_Gene:676914,ENSEMBL:ENSMUSG00000070465	MGI:3819177	pseudogene	predicted gene 9696
3	gene	60.00674	60.02542	positive	MGI_C57BL6J_3646333	Aadacl2	NCBI_Gene:639634,ENSEMBL:ENSMUSG00000091376	MGI:3646333	protein coding gene	arylacetamide deacetylase like 2
3	pseudogene	60.02036	60.02087	negative	MGI_C57BL6J_5010612	Gm18427	NCBI_Gene:100417154,ENSEMBL:ENSMUSG00000103177	MGI:5010612	pseudogene	predicted gene, 18427
3	gene	60.02572	60.04016	positive	MGI_C57BL6J_1915008	Aadac	NCBI_Gene:67758,ENSEMBL:ENSMUSG00000027761	MGI:1915008	protein coding gene	arylacetamide deacetylase
3	gene	60.08187	60.08757	positive	MGI_C57BL6J_1934135	Sucnr1	NCBI_Gene:84112,ENSEMBL:ENSMUSG00000027762	MGI:1934135	protein coding gene	succinate receptor 1
3	gene	60.12764	60.12775	negative	MGI_C57BL6J_5454159	Gm24382	ENSEMBL:ENSMUSG00000084647	MGI:5454159	snRNA gene	predicted gene, 24382
3	gene	60.29342	60.30941	negative	MGI_C57BL6J_5592809	Gm33650	NCBI_Gene:102636642	MGI:5592809	lncRNA gene	predicted gene, 33650
3	pseudogene	60.34219	60.34309	negative	MGI_C57BL6J_3779880	Tgif1-ps	NCBI_Gene:669823,ENSEMBL:ENSMUSG00000107270	MGI:3779880	pseudogene	TGFB-induced factor homeobox 1, pseudogene
3	gene	60.47279	60.62975	positive	MGI_C57BL6J_1928482	Mbnl1	NCBI_Gene:56758,ENSEMBL:ENSMUSG00000027763	MGI:1928482	protein coding gene	muscleblind like splicing factor 1
3	gene	60.53575	60.53974	positive	MGI_C57BL6J_5610817	Gm37589	ENSEMBL:ENSMUSG00000104235	MGI:5610817	unclassified gene	predicted gene, 37589
3	gene	60.57770	60.58136	positive	MGI_C57BL6J_5012001	Gm19816	NA	NA	unclassified gene	predicted gene%2c 19816
3	gene	60.60438	60.60776	positive	MGI_C57BL6J_5610716	Gm37488	ENSEMBL:ENSMUSG00000104125	MGI:5610716	unclassified gene	predicted gene, 37488
3	pseudogene	60.73763	60.73779	negative	MGI_C57BL6J_5611508	Gm38280	ENSEMBL:ENSMUSG00000104337	MGI:5611508	pseudogene	predicted gene, 38280
3	pseudogene	60.76958	60.77164	negative	MGI_C57BL6J_5592866	Gm33707	NCBI_Gene:102636711,ENSEMBL:ENSMUSG00000102298	MGI:5592866	pseudogene	predicted gene, 33707
3	gene	60.78148	61.00379	negative	MGI_C57BL6J_5610263	Gm37035	NCBI_Gene:105244455,ENSEMBL:ENSMUSG00000102564	MGI:5610263	lncRNA gene	predicted gene, 37035
3	gene	60.78836	60.79473	positive	MGI_C57BL6J_5611554	Gm38326	NCBI_Gene:102642162,ENSEMBL:ENSMUSG00000103587	MGI:5611554	lncRNA gene	predicted gene, 38326
3	pseudogene	60.86071	60.86109	positive	MGI_C57BL6J_5610213	Gm36985	ENSEMBL:ENSMUSG00000102490	MGI:5610213	pseudogene	predicted gene, 36985
3	pseudogene	60.87700	60.87884	positive	MGI_C57BL6J_3644852	Gm8325	NCBI_Gene:666853,ENSEMBL:ENSMUSG00000027694	MGI:3644852	pseudogene	predicted pseudogene 8325
3	gene	61.00279	61.00898	positive	MGI_C57BL6J_105049	P2ry1	NCBI_Gene:18441,ENSEMBL:ENSMUSG00000027765	MGI:105049	protein coding gene	purinergic receptor P2Y, G-protein coupled 1
3	pseudogene	61.29116	61.29145	negative	MGI_C57BL6J_5610947	Gm37719	ENSEMBL:ENSMUSG00000102242	MGI:5610947	pseudogene	predicted gene, 37719
3	pseudogene	61.32849	61.32923	negative	MGI_C57BL6J_5012086	Gm19901	NCBI_Gene:100503798,ENSEMBL:ENSMUSG00000102667	MGI:5012086	pseudogene	predicted gene, 19901
3	gene	61.35855	61.36190	negative	MGI_C57BL6J_5610924	Gm37696	ENSEMBL:ENSMUSG00000103473	MGI:5610924	lncRNA gene	predicted gene, 37696
3	gene	61.36164	61.36870	positive	MGI_C57BL6J_1921262	Rap2b	NCBI_Gene:74012,ENSEMBL:ENSMUSG00000036894	MGI:1921262	protein coding gene	RAP2B, member of RAS oncogene family
3	gene	61.36225	61.36595	negative	MGI_C57BL6J_3697707	B430305J03Rik	ENSEMBL:ENSMUSG00000053706	MGI:3697707	protein coding gene	RIKEN cDNA B430305J03 gene
3	gene	61.39215	61.41303	positive	MGI_C57BL6J_5622946	Gm40061	NCBI_Gene:105244456	MGI:5622946	lncRNA gene	predicted gene, 40061
3	pseudogene	61.46166	61.46288	negative	MGI_C57BL6J_3643135	Gm8349	NCBI_Gene:666891,ENSEMBL:ENSMUSG00000098208	MGI:3643135	pseudogene	predicted gene 8349
3	pseudogene	62.06754	62.06979	negative	MGI_C57BL6J_3780107	Gm9700	NCBI_Gene:676965,ENSEMBL:ENSMUSG00000104489	MGI:3780107	pseudogene	predicted gene 9700
3	gene	62.12321	62.12356	positive	MGI_C57BL6J_5610632	Gm37404	ENSEMBL:ENSMUSG00000103322	MGI:5610632	unclassified gene	predicted gene, 37404
3	gene	62.33752	62.34053	negative	MGI_C57BL6J_3704218	9330121J05Rik	ENSEMBL:ENSMUSG00000103502	MGI:3704218	lncRNA gene	RIKEN cDNA 9330121J05 gene
3	gene	62.33834	62.46222	positive	MGI_C57BL6J_1918053	Arhgef26	NCBI_Gene:622434,ENSEMBL:ENSMUSG00000036885	MGI:1918053	protein coding gene	Rho guanine nucleotide exchange factor (GEF) 26
3	gene	62.34139	62.35052	negative	MGI_C57BL6J_5593082	Gm33923	NCBI_Gene:102637008	MGI:5593082	lncRNA gene	predicted gene, 33923
3	gene	62.46801	62.50703	negative	MGI_C57BL6J_1919412	Dhx36	NCBI_Gene:72162,ENSEMBL:ENSMUSG00000027770	MGI:1919412	protein coding gene	DEAH (Asp-Glu-Ala-His) box polypeptide 36
3	gene	62.52908	62.60544	negative	MGI_C57BL6J_2443628	Gpr149	NCBI_Gene:229357,ENSEMBL:ENSMUSG00000043441	MGI:2443628	protein coding gene	G protein-coupled receptor 149
3	gene	62.60493	62.76393	positive	MGI_C57BL6J_5593207	Gm34048	NCBI_Gene:102637165	MGI:5593207	lncRNA gene	predicted gene, 34048
3	pseudogene	62.76144	62.76202	positive	MGI_C57BL6J_5010567	Gm18382	NCBI_Gene:100417044,ENSEMBL:ENSMUSG00000103764	MGI:5010567	pseudogene	predicted gene, 18382
3	gene	62.77198	62.86064	positive	MGI_C57BL6J_5622947	Gm40062	NCBI_Gene:105244457	MGI:5622947	lncRNA gene	predicted gene, 40062
3	gene	62.86768	62.88900	positive	MGI_C57BL6J_5622948	Gm40063	NCBI_Gene:105244458	MGI:5622948	lncRNA gene	predicted gene, 40063
3	pseudogene	62.92376	62.92426	negative	MGI_C57BL6J_3780108	Gm9701	NCBI_Gene:676984,ENSEMBL:ENSMUSG00000063001	MGI:3780108	pseudogene	predicted gene 9701
3	gene	63.15222	63.15236	positive	MGI_C57BL6J_5452210	Gm22433	ENSEMBL:ENSMUSG00000089175	MGI:5452210	snoRNA gene	predicted gene, 22433
3	pseudogene	63.17311	63.17386	negative	MGI_C57BL6J_3645001	Gm8388	NCBI_Gene:666967,ENSEMBL:ENSMUSG00000102270	MGI:3645001	pseudogene	predicted gene 8388
3	gene	63.23282	63.24545	negative	MGI_C57BL6J_5622949	Gm40064	NCBI_Gene:105244459	MGI:5622949	lncRNA gene	predicted gene, 40064
3	gene	63.24154	63.38603	positive	MGI_C57BL6J_97004	Mme	NCBI_Gene:17380,ENSEMBL:ENSMUSG00000027820	MGI:97004	protein coding gene	membrane metallo endopeptidase
3	gene	63.43925	63.45790	positive	MGI_C57BL6J_5593399	Gm34240	NCBI_Gene:102637430,ENSEMBL:ENSMUSG00000104336	MGI:5593399	lncRNA gene	predicted gene, 34240
3	gene	63.48110	63.48391	negative	MGI_C57BL6J_5593461	Strit1	NCBI_Gene:102637511,ENSEMBL:ENSMUSG00000103476	MGI:5593461	protein coding gene	small transmembrane regulator of ion transport 1
3	gene	63.48388	63.48437	positive	MGI_C57BL6J_5610507	Gm37279	ENSEMBL:ENSMUSG00000102883	MGI:5610507	unclassified gene	predicted gene, 37279
3	gene	63.48899	63.48910	positive	MGI_C57BL6J_5454723	Gm24946	ENSEMBL:ENSMUSG00000088957	MGI:5454723	snRNA gene	predicted gene, 24946
3	gene	63.69620	63.89972	negative	MGI_C57BL6J_2683547	Plch1	NCBI_Gene:269437,ENSEMBL:ENSMUSG00000036834	MGI:2683547	protein coding gene	phospholipase C, eta 1
3	gene	63.77021	63.77031	positive	MGI_C57BL6J_5453277	Gm23500	ENSEMBL:ENSMUSG00000088360	MGI:5453277	snRNA gene	predicted gene, 23500
3	gene	63.79610	63.83685	positive	MGI_C57BL6J_5826444	Gm46807	NCBI_Gene:108168874	MGI:5826444	lncRNA gene	predicted gene, 46807
3	pseudogene	63.82579	63.82644	positive	MGI_C57BL6J_3802047	Gm16162	ENSEMBL:ENSMUSG00000090131	MGI:3802047	pseudogene	predicted gene 16162
3	pseudogene	63.84312	63.84407	positive	MGI_C57BL6J_3801947	Gm16129	ENSEMBL:ENSMUSG00000085290	MGI:3801947	pseudogene	predicted gene 16129
3	pseudogene	63.90543	63.90573	positive	MGI_C57BL6J_5593538	Gm34379	NCBI_Gene:102637617,ENSEMBL:ENSMUSG00000103905	MGI:5593538	pseudogene	predicted gene, 34379
3	gene	63.91468	63.92947	negative	MGI_C57BL6J_3607716	E130311K13Rik	NCBI_Gene:329659,ENSEMBL:ENSMUSG00000048581	MGI:3607716	protein coding gene	RIKEN cDNA E130311K13 gene
3	gene	63.93351	63.96477	negative	MGI_C57BL6J_1332247	Slc33a1	NCBI_Gene:11416,ENSEMBL:ENSMUSG00000027822	MGI:1332247	protein coding gene	solute carrier family 33 (acetyl-CoA transporter), member 1
3	gene	63.96363	63.96866	positive	MGI_C57BL6J_5477344	Gm26850	ENSEMBL:ENSMUSG00000097724	MGI:5477344	lncRNA gene	predicted gene, 26850
3	gene	63.96482	64.02258	positive	MGI_C57BL6J_2448526	Gmps	NCBI_Gene:229363,ENSEMBL:ENSMUSG00000027823	MGI:2448526	protein coding gene	guanine monophosphate synthetase
3	pseudogene	64.05303	64.05561	negative	MGI_C57BL6J_3757653	Vmn2r-ps3	NCBI_Gene:100124546,ENSEMBL:ENSMUSG00000090303	MGI:3757653	pseudogene	vomeronasal 2, receptor, pseudogene 3
3	gene	64.07977	64.22085	positive	MGI_C57BL6J_3645892	Vmn2r1	NCBI_Gene:56544,ENSEMBL:ENSMUSG00000027824	MGI:3645892	protein coding gene	vomeronasal 2, receptor 1
3	gene	64.10963	64.10974	positive	MGI_C57BL6J_5451942	Gm22165	ENSEMBL:ENSMUSG00000089039	MGI:5451942	snRNA gene	predicted gene, 22165
3	gene	64.11528	64.17092	negative	MGI_C57BL6J_3757666	Vmn2r2	NCBI_Gene:100125586,ENSEMBL:ENSMUSG00000043897	MGI:3757666	protein coding gene	vomeronasal 2, receptor 2
3	pseudogene	64.16339	64.16385	positive	MGI_C57BL6J_3779465	Gm5139	NCBI_Gene:380739,ENSEMBL:ENSMUSG00000093447	MGI:3779465	pseudogene	predicted gene 5139
3	pseudogene	64.19557	64.21368	negative	MGI_C57BL6J_5010479	Gm18294	NCBI_Gene:100416861,ENSEMBL:ENSMUSG00000093416	MGI:5010479	pseudogene	predicted gene, 18294
3	gene	64.23373	64.23546	positive	MGI_C57BL6J_5593621	Gm34462	NCBI_Gene:102637724	MGI:5593621	lncRNA gene	predicted gene, 34462
3	gene	64.25722	64.28971	negative	MGI_C57BL6J_3643995	Vmn2r3	NCBI_Gene:637004,ENSEMBL:ENSMUSG00000091572	MGI:3643995	protein coding gene	vomeronasal 2, receptor 3
3	gene	64.27582	64.27619	negative	MGI_C57BL6J_1345615	Ifld3	NA	NA	unclassified gene	induced in fatty liver dystrophy 3
3	gene	64.31841	64.31856	negative	MGI_C57BL6J_5453674	Gm23897	ENSEMBL:ENSMUSG00000088735	MGI:5453674	snoRNA gene	predicted gene, 23897
3	pseudogene	64.32866	64.33285	positive	MGI_C57BL6J_3757669	Vmn2r-ps4	NCBI_Gene:100124547,ENSEMBL:ENSMUSG00000093503	MGI:3757669	pseudogene	vomeronasal 2, receptor, pseudogene 4
3	pseudogene	64.33956	64.35772	negative	MGI_C57BL6J_3645404	Vmn2r-ps5	NCBI_Gene:667031,ENSEMBL:ENSMUSG00000091967	MGI:3645404	polymorphic pseudogene	vomeronasal 2, receptor, pseudogene 5
3	gene	64.38304	64.41537	negative	MGI_C57BL6J_3648229	Vmn2r4	NCBI_Gene:637053,ENSEMBL:ENSMUSG00000092049	MGI:3648229	protein coding gene	vomeronasal 2, receptor 4
3	pseudogene	64.43688	64.43829	negative	MGI_C57BL6J_3757678	Vmn2r-ps6	NCBI_Gene:100124548,ENSEMBL:ENSMUSG00000093395	MGI:3757678	pseudogene	vomeronasal 2, receptor, pseudogene 6
3	pseudogene	64.44260	64.44397	negative	MGI_C57BL6J_3757679	Vmn2r-ps7	NCBI_Gene:672951,ENSEMBL:ENSMUSG00000093546	MGI:3757679	pseudogene	vomeronasal 2, receptor, pseudogene 7
3	pseudogene	64.44797	64.46009	positive	MGI_C57BL6J_5313103	Gm20656	ENSEMBL:ENSMUSG00000093671	MGI:5313103	pseudogene	predicted gene 20656
3	pseudogene	64.47702	64.47932	positive	MGI_C57BL6J_3757680	Vmn2r-ps8	NCBI_Gene:100124549,ENSEMBL:ENSMUSG00000094482	MGI:3757680	pseudogene	vomeronasal 2, receptor, pseudogene 8
3	gene	64.48861	64.50984	negative	MGI_C57BL6J_3649074	Vmn2r5	NCBI_Gene:667060,ENSEMBL:ENSMUSG00000068999	MGI:3649074	protein coding gene	vomeronasal 2, receptor 5
3	gene	64.53131	64.56583	negative	MGI_C57BL6J_3649068	Vmn2r6	NCBI_Gene:667069,ENSEMBL:ENSMUSG00000090581	MGI:3649068	protein coding gene	vomeronasal 2, receptor 6
3	pseudogene	64.59152	64.59290	negative	MGI_C57BL6J_3757686	Vmn2r-ps9	NCBI_Gene:100124550,ENSEMBL:ENSMUSG00000093699	MGI:3757686	pseudogene	vomeronasal 2, receptor, pseudogene 9
3	pseudogene	64.59691	64.60577	positive	MGI_C57BL6J_5313104	Gm20657	ENSEMBL:ENSMUSG00000093484	MGI:5313104	pseudogene	predicted gene 20657
3	pseudogene	64.60043	64.60114	positive	MGI_C57BL6J_3781218	Gm3040	NCBI_Gene:100416170	MGI:3781218	pseudogene	predicted gene 3040
3	pseudogene	64.62169	64.62399	positive	MGI_C57BL6J_3757943	Vmn2r-ps10	NCBI_Gene:100124554,ENSEMBL:ENSMUSG00000095107	MGI:3757943	pseudogene	vomeronasal 2, receptor, pseudogene 10
3	pseudogene	64.63257	64.84474	negative	MGI_C57BL6J_2441682	Vmn2r-ps11	NCBI_Gene:319210,ENSEMBL:ENSMUSG00000093434	MGI:2441682	pseudogene	vomeronasal 2, receptor, pseudogene 11
3	gene	64.63286	64.84474	negative	MGI_C57BL6J_5504054	Gm26939	ENSEMBL:ENSMUSG00000097538	MGI:5504054	lncRNA gene	predicted gene, 26939
3	gene	64.68504	64.84476	negative	MGI_C57BL6J_2441693	Vmn2r7	NCBI_Gene:319217,ENSEMBL:ENSMUSG00000062200	MGI:2441693	protein coding gene	vomeronasal 2, receptor 7
3	pseudogene	64.74475	64.74564	negative	MGI_C57BL6J_3757944	Vmn2r-ps12	NCBI_Gene:100125273,ENSEMBL:ENSMUSG00000093474	MGI:3757944	pseudogene	vomeronasal 2, receptor, pseudogene 12
3	gene	64.89447	64.89460	negative	MGI_C57BL6J_5454999	Gm25222	ENSEMBL:ENSMUSG00000088824	MGI:5454999	snoRNA gene	predicted gene, 25222
3	pseudogene	64.89885	64.89976	positive	MGI_C57BL6J_3757946	Vmn2r-ps13	NCBI_Gene:670110,ENSEMBL:ENSMUSG00000093767	MGI:3757946	pseudogene	vomeronasal 2, receptor, pseudogene 13
3	gene	64.94905	65.37823	positive	MGI_C57BL6J_109155	Kcnab1	NCBI_Gene:16497,ENSEMBL:ENSMUSG00000027827	MGI:109155	protein coding gene	potassium voltage-gated channel, shaker-related subfamily, beta member 1
3	gene	64.94922	65.22370	positive	MGI_C57BL6J_5611276	Gm38048	ENSEMBL:ENSMUSG00000102437	MGI:5611276	lncRNA gene	predicted gene, 38048

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	65.49409	65.49563	negative	MGI_C57BL6J_5593939	Gm34780	NCBI_Gene:102638146,ENSEMBL:ENSMUSG00000103513	MGI:5593939	lncRNA gene	predicted gene, 34780
3	gene	65.49517	65.51729	positive	MGI_C57BL6J_5622951	Gm40066	NCBI_Gene:105244461	MGI:5622951	lncRNA gene	predicted gene, 40066
3	pseudogene	65.50628	65.50664	negative	MGI_C57BL6J_5610237	Gm37009	ENSEMBL:ENSMUSG00000103880	MGI:5610237	pseudogene	predicted gene, 37009
3	gene	65.50646	65.52004	negative	MGI_C57BL6J_5621388	Gm38503	NCBI_Gene:102637953	MGI:5621388	lncRNA gene	predicted gene, 38503
3	gene	65.50726	65.52941	negative	MGI_C57BL6J_1918254	4931440P22Rik	NCBI_Gene:71004,ENSEMBL:ENSMUSG00000074580	MGI:1918254	lncRNA gene	RIKEN cDNA 4931440P22 gene
3	gene	65.52570	65.52579	positive	MGI_C57BL6J_5452056	Gm22279	ENSEMBL:ENSMUSG00000087825	MGI:5452056	snRNA gene	predicted gene, 22279
3	gene	65.52841	65.55552	positive	MGI_C57BL6J_2159210	Tiparp	NCBI_Gene:99929,ENSEMBL:ENSMUSG00000034640	MGI:2159210	protein coding gene	TCDD-inducible poly(ADP-ribose) polymerase
3	gene	65.57522	65.58085	negative	MGI_C57BL6J_5594083	Gm34924	NCBI_Gene:102638334	MGI:5594083	lncRNA gene	predicted gene, 34924
3	pseudogene	65.61350	65.61532	positive	MGI_C57BL6J_3648046	Gm5847	NCBI_Gene:545530,ENSEMBL:ENSMUSG00000082280	MGI:3648046	pseudogene	predicted gene 5847
3	pseudogene	65.61537	65.61617	negative	MGI_C57BL6J_5611461	Gm38233	ENSEMBL:ENSMUSG00000103294	MGI:5611461	pseudogene	predicted gene, 38233
3	gene	65.65929	65.65943	positive	MGI_C57BL6J_5531019	Mir8120	miRBase:MI0026052,NCBI_Gene:102465905,ENSEMBL:ENSMUSG00000098944	MGI:5531019	miRNA gene	microRNA 8120
3	gene	65.65954	65.83248	positive	MGI_C57BL6J_3645902	Lekr1	NCBI_Gene:624866,ENSEMBL:ENSMUSG00000074579	MGI:3645902	protein coding gene	leucine, glutamate and lysine rich 1
3	gene	65.67839	65.68088	positive	MGI_C57BL6J_5611004	Gm37776	ENSEMBL:ENSMUSG00000104037	MGI:5611004	unclassified gene	predicted gene, 37776
3	gene	65.77151	65.77162	negative	MGI_C57BL6J_5455532	Gm25755	ENSEMBL:ENSMUSG00000065330	MGI:5455532	snRNA gene	predicted gene, 25755
3	gene	65.82912	65.87228	negative	MGI_C57BL6J_5610587	Gm37359	ENSEMBL:ENSMUSG00000103620	MGI:5610587	lncRNA gene	predicted gene, 37359
3	gene	65.86327	65.86483	negative	MGI_C57BL6J_5610359	Gm37131	ENSEMBL:ENSMUSG00000103440	MGI:5610359	unclassified gene	predicted gene, 37131
3	gene	65.92610	65.92828	negative	MGI_C57BL6J_5594198	Gm35039	NCBI_Gene:102638487	MGI:5594198	lncRNA gene	predicted gene, 35039
3	pseudogene	65.93349	65.93391	negative	MGI_C57BL6J_5610265	Gm37037	ENSEMBL:ENSMUSG00000102566	MGI:5610265	pseudogene	predicted gene, 37037
3	gene	65.94591	65.95839	negative	MGI_C57BL6J_1922664	Ccnl1	NCBI_Gene:56706,ENSEMBL:ENSMUSG00000027829	MGI:1922664	protein coding gene	cyclin L1
3	gene	65.95776	65.96204	positive	MGI_C57BL6J_5610533	Gm37305	ENSEMBL:ENSMUSG00000103041	MGI:5610533	lncRNA gene	predicted gene, 37305
3	pseudogene	65.96873	65.97028	negative	MGI_C57BL6J_5594265	Gm35106	NCBI_Gene:105244463,ENSEMBL:ENSMUSG00000102914	MGI:5594265	pseudogene	predicted gene, 35106
3	gene	65.96991	65.97192	positive	MGI_C57BL6J_5610306	Gm37078	ENSEMBL:ENSMUSG00000102652	MGI:5610306	unclassified gene	predicted gene, 37078
3	pseudogene	65.98716	65.98975	negative	MGI_C57BL6J_5011209	Gm19024	NCBI_Gene:100418133,ENSEMBL:ENSMUSG00000103641	MGI:5011209	pseudogene	predicted gene, 19024
3	pseudogene	66.02950	66.03152	negative	MGI_C57BL6J_3643872	Gm6546	NCBI_Gene:625048,ENSEMBL:ENSMUSG00000103369	MGI:3643872	pseudogene	predicted gene 6546
3	gene	66.05356	66.29707	negative	MGI_C57BL6J_1920039	Veph1	NCBI_Gene:72789,ENSEMBL:ENSMUSG00000027831	MGI:1920039	protein coding gene	ventricular zone expressed PH domain-containing 1
3	gene	66.08668	66.08779	positive	MGI_C57BL6J_5611050	Gm37822	ENSEMBL:ENSMUSG00000104189	MGI:5611050	unclassified gene	predicted gene, 37822
3	gene	66.08811	66.08826	negative	MGI_C57BL6J_5456219	Gm26442	ENSEMBL:ENSMUSG00000064522	MGI:5456219	snRNA gene	predicted gene, 26442
3	pseudogene	66.09981	66.10006	positive	MGI_C57BL6J_5610201	Gm36973	ENSEMBL:ENSMUSG00000104307	MGI:5610201	pseudogene	predicted gene, 36973
3	pseudogene	66.12840	66.12975	negative	MGI_C57BL6J_98800	Tpi-rs2	NCBI_Gene:111205,ENSEMBL:ENSMUSG00000097968	MGI:98800	pseudogene	triosephosphate isomerase related sequence 2
3	pseudogene	66.19109	66.19124	negative	MGI_C57BL6J_5610558	Gm37330	ENSEMBL:ENSMUSG00000103208	MGI:5610558	pseudogene	predicted gene, 37330
3	gene	66.21989	66.22581	positive	MGI_C57BL6J_104641	Ptx3	NCBI_Gene:19288,ENSEMBL:ENSMUSG00000027832	MGI:104641	protein coding gene	pentraxin related gene
3	pseudogene	66.36454	66.36463	positive	MGI_C57BL6J_6275305	Gm50014	ENSEMBL:ENSMUSG00000117623	MGI:6275305	pseudogene	predicted gene, 50014
3	gene	66.37430	66.38810	positive	MGI_C57BL6J_5594343	Gm35184	NCBI_Gene:102638679	MGI:5594343	lncRNA gene	predicted gene, 35184
3	gene	66.40041	66.40607	positive	MGI_C57BL6J_5594395	Gm35236	NCBI_Gene:102638746	MGI:5594395	lncRNA gene	predicted gene, 35236
3	pseudogene	66.56278	66.56355	negative	MGI_C57BL6J_5010137	Gm17952	NCBI_Gene:100416166,ENSEMBL:ENSMUSG00000103600	MGI:5010137	pseudogene	predicted gene, 17952
3	pseudogene	66.88235	66.88314	positive	MGI_C57BL6J_3646021	Gm6555	NCBI_Gene:625115,ENSEMBL:ENSMUSG00000103700	MGI:3646021	pseudogene	predicted gene 6555
3	pseudogene	66.90736	66.90777	negative	MGI_C57BL6J_5611584	Gm38356	ENSEMBL:ENSMUSG00000103318	MGI:5611584	pseudogene	predicted gene, 38356
3	pseudogene	66.95354	66.95386	positive	MGI_C57BL6J_5663653	Gm43516	ENSEMBL:ENSMUSG00000105794	MGI:5663653	pseudogene	predicted gene 43516
3	gene	66.97172	66.98177	negative	MGI_C57BL6J_1201673	Shox2	NCBI_Gene:20429,ENSEMBL:ENSMUSG00000027833	MGI:1201673	protein coding gene	short stature homeobox 2
3	gene	66.98139	67.35840	positive	MGI_C57BL6J_1914130	Rsrc1	NCBI_Gene:66880,ENSEMBL:ENSMUSG00000034544	MGI:1914130	protein coding gene	arginine/serine-rich coiled-coil 1
3	gene	67.05596	67.05606	positive	MGI_C57BL6J_5452072	Gm22295	ENSEMBL:ENSMUSG00000065245	MGI:5452072	snRNA gene	predicted gene, 22295
3	gene	67.36546	67.37516	negative	MGI_C57BL6J_4937036	Gm17402	ENSEMBL:ENSMUSG00000090408	MGI:4937036	protein coding gene	predicted gene, 17402
3	gene	67.37410	67.40000	positive	MGI_C57BL6J_1341819	Mlf1	NCBI_Gene:17349,ENSEMBL:ENSMUSG00000048416	MGI:1341819	protein coding gene	myeloid leukemia factor 1
3	gene	67.43010	67.47653	positive	MGI_C57BL6J_107339	Gfm1	NCBI_Gene:28030,ENSEMBL:ENSMUSG00000027774	MGI:107339	protein coding gene	G elongation factor, mitochondrial 1
3	gene	67.45800	67.46393	negative	MGI_C57BL6J_107633	Lxn	NCBI_Gene:17035,ENSEMBL:ENSMUSG00000047557	MGI:107633	protein coding gene	latexin
3	gene	67.47698	67.47882	positive	MGI_C57BL6J_5662705	Gm42568	ENSEMBL:ENSMUSG00000103703	MGI:5662705	unclassified gene	predicted gene 42568
3	gene	67.47889	67.51552	negative	MGI_C57BL6J_1924461	Rarres1	NCBI_Gene:109222,ENSEMBL:ENSMUSG00000049404	MGI:1924461	protein coding gene	retinoic acid receptor responder (tazarotene induced) 1
3	gene	67.51567	67.51966	positive	MGI_C57BL6J_5622952	Gm40067	NCBI_Gene:105244464	MGI:5622952	lncRNA gene	predicted gene, 40067
3	gene	67.52266	67.55343	negative	MGI_C57BL6J_5594458	Gm35299	NCBI_Gene:102638825,ENSEMBL:ENSMUSG00000103718	MGI:5594458	lncRNA gene	predicted gene, 35299
3	gene	67.57057	67.57282	negative	MGI_C57BL6J_1921179	4930402C01Rik	ENSEMBL:ENSMUSG00000104382	MGI:1921179	lncRNA gene	RIKEN cDNA 4930402C01 gene
3	gene	67.57316	67.57329	negative	MGI_C57BL6J_5455696	Gm25919	ENSEMBL:ENSMUSG00000077459	MGI:5455696	snoRNA gene	predicted gene, 25919
3	gene	67.58274	67.60424	positive	MGI_C57BL6J_1914118	Mfsd1	NCBI_Gene:66868,ENSEMBL:ENSMUSG00000027775	MGI:1914118	protein coding gene	major facilitator superfamily domain containing 1
3	pseudogene	67.60575	67.60785	negative	MGI_C57BL6J_3648243	Gm8515	NCBI_Gene:667207,ENSEMBL:ENSMUSG00000103206	MGI:3648243	pseudogene	predicted gene 8515
3	pseudogene	67.61978	67.62073	negative	MGI_C57BL6J_2685258	Gm412	NCBI_Gene:208424,ENSEMBL:ENSMUSG00000103606	MGI:2685258	pseudogene	predicted gene 412
3	pseudogene	67.68436	67.68475	negative	MGI_C57BL6J_5610829	Gm37601	ENSEMBL:ENSMUSG00000102746	MGI:5610829	pseudogene	predicted gene, 37601
3	pseudogene	67.74197	67.74330	negative	MGI_C57BL6J_5010902	Gm18717	NCBI_Gene:100417618,ENSEMBL:ENSMUSG00000104477	MGI:5010902	pseudogene	predicted gene, 18717
3	gene	67.75360	67.75565	positive	MGI_C57BL6J_5594566	Gm35407	NCBI_Gene:102638975	MGI:5594566	lncRNA gene	predicted gene, 35407
3	gene	67.75566	67.76628	positive	MGI_C57BL6J_5622953	Gm40068	NCBI_Gene:105244465	MGI:5622953	lncRNA gene	predicted gene, 40068
3	gene	67.89222	68.05659	positive	MGI_C57BL6J_3644166	Iqcj	NCBI_Gene:208426,ENSEMBL:ENSMUSG00000051777	MGI:3644166	protein coding gene	IQ motif containing J
3	gene	67.89222	68.62648	positive	MGI_C57BL6J_5439400	Iqschfp	NCBI_Gene:100505386,ENSEMBL:ENSMUSG00000102422	MGI:5439400	protein coding gene	Iqcj and Schip1 fusion protein
3	gene	68.06480	68.62648	positive	MGI_C57BL6J_1353557	Schip1	NCBI_Gene:30953,ENSEMBL:ENSMUSG00000027777	MGI:1353557	protein coding gene	schwannomin interacting protein 1
3	pseudogene	68.30377	68.31036	negative	MGI_C57BL6J_3648047	Gm5848	NCBI_Gene:545531	MGI:3648047	pseudogene	predicted pseudogene 5848
3	pseudogene	68.33319	68.33378	positive	MGI_C57BL6J_3642851	Gm10292	NCBI_Gene:631379,ENSEMBL:ENSMUSG00000102846	MGI:3642851	pseudogene	predicted gene 10292
3	gene	68.40778	68.41470	positive	MGI_C57BL6J_3641783	Gm10723	ENSEMBL:ENSMUSG00000103345	MGI:3641783	unclassified gene	predicted gene 10723
3	gene	68.54752	68.54771	negative	MGI_C57BL6J_5451850	Gm22073	ENSEMBL:ENSMUSG00000084617	MGI:5451850	snRNA gene	predicted gene, 22073
3	gene	68.69064	68.69855	positive	MGI_C57BL6J_96539	Il12a	NCBI_Gene:16159,ENSEMBL:ENSMUSG00000027776	MGI:96539	protein coding gene	interleukin 12a
3	pseudogene	68.73314	68.73808	positive	MGI_C57BL6J_3708676	Gm10040	ENSEMBL:ENSMUSG00000058360	MGI:3708676	pseudogene	predicted gene 10040
3	gene	68.75991	68.76143	negative	MGI_C57BL6J_1922468	4930535E02Rik	ENSEMBL:ENSMUSG00000102677	MGI:1922468	lncRNA gene	RIKEN cDNA 4930535E02 gene
3	gene	68.76136	68.76267	positive	MGI_C57BL6J_5594743	Gm35584	NCBI_Gene:102639225,ENSEMBL:ENSMUSG00000102936	MGI:5594743	lncRNA gene	predicted gene, 35584
3	pseudogene	68.84608	68.84741	positive	MGI_C57BL6J_3644317	Gm7270	NCBI_Gene:639530,ENSEMBL:ENSMUSG00000103218,ENSEMBL:ENSMUSG00000102853	MGI:3644317	pseudogene	predicted gene 7270
3	gene	68.86792	68.87027	negative	MGI_C57BL6J_4937275	Gm17641	ENSEMBL:ENSMUSG00000091272	MGI:4937275	protein coding gene	predicted gene, 17641
3	gene	68.86959	68.87216	positive	MGI_C57BL6J_1915975	1110032F04Rik	NCBI_Gene:68725,ENSEMBL:ENSMUSG00000046999	MGI:1915975	protein coding gene	RIKEN cDNA 1110032F04 gene
3	gene	68.89250	69.00464	negative	MGI_C57BL6J_1915509	Ift80	NCBI_Gene:68259,ENSEMBL:ENSMUSG00000027778	MGI:1915509	protein coding gene	intraflagellar transport 80
3	pseudogene	68.90017	68.90045	negative	MGI_C57BL6J_5313136	Gm20689	ENSEMBL:ENSMUSG00000093384	MGI:5313136	pseudogene	predicted gene 20689
3	pseudogene	68.90181	68.90216	positive	MGI_C57BL6J_5313137	Gm20690	ENSEMBL:ENSMUSG00000093730,ENSEMBL:ENSMUSG00000103007	MGI:5313137	pseudogene	predicted gene 20690
3	pseudogene	68.90216	68.90278	negative	MGI_C57BL6J_5010773	Gm18588	NCBI_Gene:100417394,ENSEMBL:ENSMUSG00000093402	MGI:5010773	pseudogene	predicted gene, 18588
3	pseudogene	68.90382	68.90415	negative	MGI_C57BL6J_5313138	Gm20691	ENSEMBL:ENSMUSG00000093505	MGI:5313138	pseudogene	predicted gene 20691
3	gene	68.91650	68.91732	negative	MGI_C57BL6J_6097561	Gm48183	ENSEMBL:ENSMUSG00000111756	MGI:6097561	unclassified gene	predicted gene, 48183
3	gene	69.00474	69.03462	positive	MGI_C57BL6J_1917349	Smc4	NCBI_Gene:70099,ENSEMBL:ENSMUSG00000034349	MGI:1917349	protein coding gene	structural maintenance of chromosomes 4
3	gene	69.00977	69.00983	positive	MGI_C57BL6J_2676842	Mir15b	miRBase:MI0000140,NCBI_Gene:387175,ENSEMBL:ENSMUSG00000065580	MGI:2676842	miRNA gene	microRNA 15b
3	gene	69.00990	69.01000	positive	MGI_C57BL6J_3618690	Mir16-2	miRBase:MI0000566,NCBI_Gene:723949,ENSEMBL:ENSMUSG00000065606	MGI:3618690	miRNA gene	microRNA 16-2
3	gene	69.03529	69.04640	negative	MGI_C57BL6J_1914199	Trim59	NCBI_Gene:66949,ENSEMBL:ENSMUSG00000034317	MGI:1914199	protein coding gene	tripartite motif-containing 59
3	gene	69.06065	69.06525	positive	MGI_C57BL6J_2442898	9630025H16Rik	NCBI_Gene:105244467	MGI:2442898	lncRNA gene	RIKEN cDNA 9630025H16 gene
3	gene	69.06715	69.12711	negative	MGI_C57BL6J_1100848	Kpna4	NCBI_Gene:16649,ENSEMBL:ENSMUSG00000027782	MGI:1100848	protein coding gene	karyopherin (importin) alpha 4
3	gene	69.08510	69.08545	negative	MGI_C57BL6J_5451786	Gm22009	ENSEMBL:ENSMUSG00000089417	MGI:5451786	snoRNA gene	predicted gene, 22009
3	gene	69.11974	69.12272	negative	MGI_C57BL6J_5610786	Gm37558	ENSEMBL:ENSMUSG00000103094	MGI:5610786	unclassified gene	predicted gene, 37558
3	gene	69.13123	69.15718	positive	MGI_C57BL6J_2686493	Gm1647	NCBI_Gene:381452,ENSEMBL:ENSMUSG00000094763	MGI:2686493	lncRNA gene	predicted gene 1647
3	gene	69.22242	69.22362	positive	MGI_C57BL6J_1918869	Arl14	NCBI_Gene:71619,ENSEMBL:ENSMUSG00000098207	MGI:1918869	protein coding gene	ADP-ribosylation factor-like 14
3	gene	69.25461	69.26383	positive	MGI_C57BL6J_5622955	Gm40070	NCBI_Gene:105244468	MGI:5622955	lncRNA gene	predicted gene, 40070
3	gene	69.31686	69.56080	positive	MGI_C57BL6J_2139740	Ppm1l	NCBI_Gene:242083,ENSEMBL:ENSMUSG00000027784	MGI:2139740	protein coding gene	protein phosphatase 1 (formerly 2C)-like
3	gene	69.31816	69.31929	negative	MGI_C57BL6J_1920514	1700037N05Rik	NA	NA	unclassified gene	RIKEN cDNA 1700037N05 gene
3	pseudogene	69.32001	69.32062	negative	MGI_C57BL6J_4938041	Gm17214	NCBI_Gene:100416279,ENSEMBL:ENSMUSG00000091315	MGI:4938041	pseudogene	predicted gene 17214
3	pseudogene	69.33519	69.33579	negative	MGI_C57BL6J_4938039	Gm17212	NCBI_Gene:100416280,ENSEMBL:ENSMUSG00000090941	MGI:4938039	pseudogene	predicted gene 17212
3	gene	69.37640	69.38370	positive	MGI_C57BL6J_2443158	A330078L11Rik	NA	NA	unclassified gene	RIKEN cDNA A330078L11 gene
3	pseudogene	69.43101	69.43238	negative	MGI_C57BL6J_4938040	Gm17213	NCBI_Gene:100417908,ENSEMBL:ENSMUSG00000090743	MGI:4938040	pseudogene	predicted gene 17213
3	pseudogene	69.56624	69.56747	negative	MGI_C57BL6J_3644126	Gm8565	NCBI_Gene:667309,ENSEMBL:ENSMUSG00000098006	MGI:3644126	pseudogene	predicted gene 8565
3	gene	69.57392	69.59896	negative	MGI_C57BL6J_1349405	B3galnt1	NCBI_Gene:26879,ENSEMBL:ENSMUSG00000043300	MGI:1349405	protein coding gene	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1
3	pseudogene	69.66177	69.66216	positive	MGI_C57BL6J_5610608	Gm37380	ENSEMBL:ENSMUSG00000102342	MGI:5610608	pseudogene	predicted gene, 37380
3	gene	69.68547	69.68558	positive	MGI_C57BL6J_5455398	Gm25621	ENSEMBL:ENSMUSG00000087848	MGI:5455398	rRNA gene	predicted gene, 25621
3	pseudogene	69.71694	69.71744	negative	MGI_C57BL6J_98039	Rpl32-ps	NCBI_Gene:19952,ENSEMBL:ENSMUSG00000068969	MGI:98039	pseudogene	ribosomal protein L32, pseudogene
3	gene	69.72199	69.75637	positive	MGI_C57BL6J_2140103	Nmd3	NCBI_Gene:97112,ENSEMBL:ENSMUSG00000027787	MGI:2140103	protein coding gene	NMD3 ribosome export adaptor
3	gene	69.75311	69.75637	positive	MGI_C57BL6J_2442565	9530051E23Rik	NA	NA	unclassified gene	RIKEN cDNA 9530051E23 gene
3	pseudogene	69.80846	69.80902	negative	MGI_C57BL6J_5011240	Gm19055	NCBI_Gene:100418175	MGI:5011240	pseudogene	predicted gene, 19055
3	gene	69.81954	69.85994	negative	MGI_C57BL6J_1913433	Sptssb	NCBI_Gene:66183,ENSEMBL:ENSMUSG00000043461	MGI:1913433	protein coding gene	serine palmitoyltransferase, small subunit B
3	gene	69.88247	69.88411	positive	MGI_C57BL6J_5594976	Gm35817	NCBI_Gene:102639522	MGI:5594976	lncRNA gene	predicted gene, 35817
3	pseudogene	69.95481	69.95568	negative	MGI_C57BL6J_5010080	Gm17895	NCBI_Gene:100416058,ENSEMBL:ENSMUSG00000103549	MGI:5010080	pseudogene	predicted gene, 17895
3	gene	69.96232	69.96245	negative	MGI_C57BL6J_5453261	Gm23484	ENSEMBL:ENSMUSG00000077366	MGI:5453261	snoRNA gene	predicted gene, 23484
3	pseudogene	69.96328	69.96347	positive	MGI_C57BL6J_5611012	Gm37784	ENSEMBL:ENSMUSG00000102525	MGI:5611012	pseudogene	predicted gene, 37784
3	gene	70.00761	70.02871	positive	MGI_C57BL6J_2685260	Otol1	NCBI_Gene:229389,ENSEMBL:ENSMUSG00000027788	MGI:2685260	protein coding gene	otolin 1
3	pseudogene	70.05975	70.06047	positive	MGI_C57BL6J_5610909	Gm37681	ENSEMBL:ENSMUSG00000103020	MGI:5610909	pseudogene	predicted gene, 37681
3	pseudogene	70.11625	70.11653	negative	MGI_C57BL6J_5610813	Gm37585	ENSEMBL:ENSMUSG00000103113	MGI:5610813	pseudogene	predicted gene, 37585
3	gene	70.22875	70.22887	negative	MGI_C57BL6J_5453254	Gm23477	ENSEMBL:ENSMUSG00000089507	MGI:5453254	snoRNA gene	predicted gene, 23477
3	pseudogene	70.41328	70.41388	positive	MGI_C57BL6J_3644892	Gm6631	NCBI_Gene:625868,ENSEMBL:ENSMUSG00000102663	MGI:3644892	pseudogene	predicted gene 6631
3	pseudogene	70.56626	70.56730	negative	MGI_C57BL6J_5610441	Gm37213	ENSEMBL:ENSMUSG00000104023	MGI:5610441	pseudogene	predicted gene, 37213

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	pseudogene	72.60384	72.60435	negative	MGI_C57BL6J_5611129	Gm37901	ENSEMBL:ENSMUSG00000103078	MGI:5611129	pseudogene	predicted gene, 37901
3	gene	72.73783	72.73798	negative	MGI_C57BL6J_5452228	Gm22451	ENSEMBL:ENSMUSG00000084752	MGI:5452228	snRNA gene	predicted gene, 22451
3	gene	72.88855	72.96786	negative	MGI_C57BL6J_1917233	Sis	NCBI_Gene:69983,ENSEMBL:ENSMUSG00000027790	MGI:1917233	protein coding gene	sucrase isomaltase (alpha-glucosidase)
3	gene	73.04197	73.04384	negative	MGI_C57BL6J_5610284	Gm37056	ENSEMBL:ENSMUSG00000102753	MGI:5610284	unclassified gene	predicted gene, 37056
3	gene	73.04725	73.05788	negative	MGI_C57BL6J_2679447	Slitrk3	NCBI_Gene:386750,ENSEMBL:ENSMUSG00000048304	MGI:2679447	protein coding gene	SLIT and NTRK-like family, member 3
3	gene	73.06632	73.59483	positive	MGI_C57BL6J_5434110	Gm20754	NCBI_Gene:626082,ENSEMBL:ENSMUSG00000103428	MGI:5434110	lncRNA gene	predicted gene, 20754
3	gene	73.14685	73.14696	positive	MGI_C57BL6J_5454321	Gm24544	ENSEMBL:ENSMUSG00000077050	MGI:5454321	miRNA gene	predicted gene, 24544
3	gene	73.16409	73.16621	positive	MGI_C57BL6J_5610953	Gm37725	ENSEMBL:ENSMUSG00000102916	MGI:5610953	unclassified gene	predicted gene, 37725
3	gene	73.20770	73.20800	negative	MGI_C57BL6J_5452315	Gm22538	ENSEMBL:ENSMUSG00000088794	MGI:5452315	unclassified non-coding RNA gene	predicted gene, 22538
3	gene	73.32943	73.47001	positive	MGI_C57BL6J_5611581	Gm38353	ENSEMBL:ENSMUSG00000102820	MGI:5611581	lncRNA gene	predicted gene, 38353
3	gene	73.35121	73.48165	negative	MGI_C57BL6J_1921943	4930509J09Rik	NCBI_Gene:74693,ENSEMBL:ENSMUSG00000102362	MGI:1921943	lncRNA gene	RIKEN cDNA 4930509J09 gene
3	gene	73.63581	73.70844	negative	MGI_C57BL6J_894278	Bche	NCBI_Gene:12038,ENSEMBL:ENSMUSG00000027792	MGI:894278	protein coding gene	butyrylcholinesterase

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	pseudogene	73.93305	73.93412	positive	MGI_C57BL6J_3644686	Gm8625	NCBI_Gene:667425,ENSEMBL:ENSMUSG00000102859	MGI:3644686	pseudogene	predicted gene 8625
3	gene	74.00922	74.01728	negative	MGI_C57BL6J_5012541	Gm20356	NCBI_Gene:100504692,ENSEMBL:ENSMUSG00000104096	MGI:5012541	lncRNA gene	predicted gene, 20356
3	gene	74.10541	74.12645	negative	MGI_C57BL6J_5595228	Gm36069	NCBI_Gene:102639855	MGI:5595228	lncRNA gene	predicted gene, 36069
3	pseudogene	74.24226	74.29687	negative	MGI_C57BL6J_3779552	Gm6098	NCBI_Gene:100861784,ENSEMBL:ENSMUSG00000096400	MGI:3779552	pseudogene	predicted gene 6098
3	pseudogene	74.32353	74.32399	negative	MGI_C57BL6J_5610278	Gm37050	ENSEMBL:ENSMUSG00000104227	MGI:5610278	pseudogene	predicted gene, 37050
3	pseudogene	74.81472	74.81534	positive	MGI_C57BL6J_3647458	Gm8643	NCBI_Gene:108168917,ENSEMBL:ENSMUSG00000102809	MGI:3647458	pseudogene	predicted gene 8643
3	gene	75.02240	75.02461	negative	MGI_C57BL6J_5610692	Gm37464	ENSEMBL:ENSMUSG00000102420	MGI:5610692	unclassified gene	predicted gene, 37464
3	gene	75.03790	75.16505	negative	MGI_C57BL6J_2674085	Zbbx	NCBI_Gene:213234,ENSEMBL:ENSMUSG00000034151	MGI:2674085	protein coding gene	zinc finger, B-box domain containing
3	gene	75.16506	75.20808	positive	MGI_C57BL6J_5622956	Gm40071	NCBI_Gene:105244469	MGI:5622956	lncRNA gene	predicted gene, 40071
3	gene	75.24236	75.27008	negative	MGI_C57BL6J_1915181	Serpini2	NCBI_Gene:67931,ENSEMBL:ENSMUSG00000034139	MGI:1915181	protein coding gene	serine (or cysteine) peptidase inhibitor, clade I, member 2
3	gene	75.27393	75.48216	negative	MGI_C57BL6J_3645287	Wdr49	NCBI_Gene:213248,ENSEMBL:ENSMUSG00000104301	MGI:3645287	protein coding gene	WD repeat domain 49
3	pseudogene	75.39132	75.39264	positive	MGI_C57BL6J_5010021	Gm17836	NCBI_Gene:100415953,ENSEMBL:ENSMUSG00000103444	MGI:5010021	pseudogene	predicted gene, 17836
3	gene	75.51649	75.55686	negative	MGI_C57BL6J_1928396	Pdcd10	NCBI_Gene:56426,ENSEMBL:ENSMUSG00000027835	MGI:1928396	protein coding gene	programmed cell death 10

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	75.87508	75.95695	negative	MGI_C57BL6J_1920374	Golim4	NCBI_Gene:73124,ENSEMBL:ENSMUSG00000034109	MGI:1920374	protein coding gene	golgi integral membrane protein 4
3	gene	75.95212	75.95430	positive	MGI_C57BL6J_5610913	Gm37685	ENSEMBL:ENSMUSG00000103024	MGI:5610913	unclassified gene	predicted gene, 37685
3	gene	75.95610	76.00114	positive	MGI_C57BL6J_5610484	Gm37256	ENSEMBL:ENSMUSG00000104448	MGI:5610484	lncRNA gene	predicted gene, 37256
3	pseudogene	76.04092	76.04172	negative	MGI_C57BL6J_5010613	Gm18428	NCBI_Gene:100417155,ENSEMBL:ENSMUSG00000104223	MGI:5010613	pseudogene	predicted gene, 18428
3	gene	76.07427	76.71002	positive	MGI_C57BL6J_2442179	Fstl5	NCBI_Gene:213262,ENSEMBL:ENSMUSG00000034098	MGI:2442179	protein coding gene	follistatin-like 5
3	gene	76.54669	76.55025	positive	MGI_C57BL6J_5611125	Gm37897	ENSEMBL:ENSMUSG00000103920	MGI:5611125	unclassified gene	predicted gene, 37897
3	pseudogene	76.82206	76.82240	positive	MGI_C57BL6J_5610518	Gm37290	ENSEMBL:ENSMUSG00000103702	MGI:5610518	pseudogene	predicted gene, 37290
3	pseudogene	76.88450	76.88533	positive	MGI_C57BL6J_5011416	Gm19231	NCBI_Gene:100418471,ENSEMBL:ENSMUSG00000102216	MGI:5011416	pseudogene	predicted gene, 19231
3	gene	77.10521	77.10528	negative	MGI_C57BL6J_5453421	Gm23644	ENSEMBL:ENSMUSG00000088481	MGI:5453421	snoRNA gene	predicted gene, 23644
3	pseudogene	77.56081	77.56394	negative	MGI_C57BL6J_2674154	Dnmt3a-ps1	NCBI_Gene:445261,ENSEMBL:ENSMUSG00000102489	MGI:2674154	pseudogene	DNA methyltransferase 3A, pseudogene 1
3	gene	77.56496	77.57134	negative	MGI_C57BL6J_5611034	Gm37806	ENSEMBL:ENSMUSG00000103849	MGI:5611034	unclassified gene	predicted gene, 37806
3	pseudogene	77.69137	77.69223	negative	MGI_C57BL6J_5010480	Gm18295	NCBI_Gene:100416866	MGI:5010480	pseudogene	predicted gene, 18295
3	gene	77.70289	77.70439	negative	MGI_C57BL6J_5611423	Gm38195	ENSEMBL:ENSMUSG00000102872	MGI:5611423	unclassified gene	predicted gene, 38195
3	pseudogene	77.87278	77.87315	negative	MGI_C57BL6J_5610804	Gm37576	ENSEMBL:ENSMUSG00000102393	MGI:5610804	pseudogene	predicted gene, 37576
3	pseudogene	77.96138	77.96280	positive	MGI_C57BL6J_5010904	Gm18719	NCBI_Gene:100417620,ENSEMBL:ENSMUSG00000105026	MGI:5010904	pseudogene	predicted gene, 18719
3	pseudogene	78.00646	78.00698	positive	MGI_C57BL6J_3648953	Gm6677	NCBI_Gene:626461,ENSEMBL:ENSMUSG00000103312	MGI:3648953	pseudogene	predicted gene 6677
3	pseudogene	78.08583	78.08740	negative	MGI_C57BL6J_3643677	Gm8684	NCBI_Gene:667526,ENSEMBL:ENSMUSG00000102637	MGI:3643677	pseudogene	predicted gene 8684
3	pseudogene	78.13446	78.13558	positive	MGI_C57BL6J_3645908	Gm6680	NCBI_Gene:626479,ENSEMBL:ENSMUSG00000103817	MGI:3645908	pseudogene	predicted gene 6680
3	gene	78.40430	78.40594	negative	MGI_C57BL6J_5663463	Gm43326	ENSEMBL:ENSMUSG00000104782	MGI:5663463	unclassified gene	predicted gene 43326
3	gene	78.40616	78.41077	negative	MGI_C57BL6J_5595447	Gm36288	NCBI_Gene:102640153	MGI:5595447	lncRNA gene	predicted gene, 36288
3	pseudogene	78.48658	78.48868	negative	MGI_C57BL6J_3705708	Gm15442	NCBI_Gene:100041691,ENSEMBL:ENSMUSG00000084370	MGI:3705708	pseudogene	predicted gene 15442
3	pseudogene	78.75862	78.75946	positive	MGI_C57BL6J_5011137	Gm18952	NCBI_Gene:100418022,ENSEMBL:ENSMUSG00000102341	MGI:5011137	pseudogene	predicted gene, 18952
3	gene	78.78973	78.79223	negative	MGI_C57BL6J_5595500	Gm36341	NCBI_Gene:102640221	MGI:5595500	lncRNA gene	predicted gene, 36341
3	gene	78.84222	78.84257	positive	MGI_C57BL6J_5454526	Gm24749	ENSEMBL:ENSMUSG00000088463	MGI:5454526	unclassified non-coding RNA gene	predicted gene, 24749
3	pseudogene	78.86489	78.86557	negative	MGI_C57BL6J_5010138	Gm17953	NCBI_Gene:100416167,ENSEMBL:ENSMUSG00000102438	MGI:5010138	pseudogene	predicted gene, 17953
3	pseudogene	78.89183	78.89247	negative	MGI_C57BL6J_3646590	Gm5277	NCBI_Gene:383883,ENSEMBL:ENSMUSG00000091361	MGI:3646590	pseudogene	predicted gene 5277
3	pseudogene	78.91724	78.91846	positive	MGI_C57BL6J_3641638	Gm10291	NCBI_Gene:100041748,ENSEMBL:ENSMUSG00000070443	MGI:3641638	pseudogene	predicted pseudogene 10291
3	gene	78.91846	78.93631	negative	MGI_C57BL6J_5621427	Gm38542	NCBI_Gene:102641233	MGI:5621427	lncRNA gene	predicted gene, 38542
3	pseudogene	78.96549	78.96715	negative	MGI_C57BL6J_3704220	Gm9762	NCBI_Gene:100041766,ENSEMBL:ENSMUSG00000037096	MGI:3704220	pseudogene	predicted pseudogene 9762
3	gene	78.97992	78.98005	positive	MGI_C57BL6J_5453217	Gm23440	ENSEMBL:ENSMUSG00000077487	MGI:5453217	snoRNA gene	predicted gene, 23440
3	gene	79.06251	79.28724	negative	MGI_C57BL6J_2659071	Rapgef2	NCBI_Gene:76089,ENSEMBL:ENSMUSG00000062232	MGI:2659071	protein coding gene	Rap guanine nucleotide exchange factor (GEF) 2
3	gene	79.19637	79.19648	positive	MGI_C57BL6J_5453927	Gm24150	ENSEMBL:ENSMUSG00000064693	MGI:5453927	snRNA gene	predicted gene, 24150
3	gene	79.21292	79.25391	positive	MGI_C57BL6J_1918174	4921511C10Rik	NCBI_Gene:70924,ENSEMBL:ENSMUSG00000104585	MGI:1918174	lncRNA gene	RIKEN cDNA 4921511C10 gene
3	gene	79.23228	79.23413	negative	MGI_C57BL6J_2443462	B930012P20Rik	NA	NA	unclassified gene	RIKEN cDNA B930012P20 gene
3	gene	79.28717	79.28985	positive	MGI_C57BL6J_2686494	6430573P05Rik	ENSEMBL:ENSMUSG00000102545	MGI:2686494	lncRNA gene	RIKEN cDNA 6430573P05 gene
3	gene	79.33420	79.33658	negative	MGI_C57BL6J_5622957	Gm40072	NCBI_Gene:105244470	MGI:5622957	lncRNA gene	predicted gene, 40072
3	gene	79.33666	79.46413	positive	MGI_C57BL6J_4936993	Gm17359	NCBI_Gene:100233207,ENSEMBL:ENSMUSG00000091685	MGI:4936993	protein coding gene	predicted gene, 17359
3	gene	79.45597	79.56780	negative	MGI_C57BL6J_2683054	Fnip2	NCBI_Gene:329679,ENSEMBL:ENSMUSG00000061175	MGI:2683054	protein coding gene	folliculin interacting protein 2
3	gene	79.50979	79.51210	negative	MGI_C57BL6J_5595601	Gm36442	NCBI_Gene:102640362	MGI:5595601	lncRNA gene	predicted gene, 36442
3	gene	79.55131	79.55219	negative	MGI_C57BL6J_3781690	Gm3513	ENSEMBL:ENSMUSG00000089746	MGI:3781690	lncRNA gene	predicted gene 3513
3	gene	79.56819	79.57332	positive	MGI_C57BL6J_1923129	4930589L23Rik	NCBI_Gene:75879,ENSEMBL:ENSMUSG00000068957	MGI:1923129	lncRNA gene	RIKEN cDNA 4930589L23 gene
3	pseudogene	79.58259	79.58323	positive	MGI_C57BL6J_5594226	Gm35067	ENSEMBL:ENSMUSG00000103564	MGI:5594226	pseudogene	predicted gene, 35067
3	gene	79.59134	79.60365	positive	MGI_C57BL6J_1914988	Ppid	NCBI_Gene:67738,ENSEMBL:ENSMUSG00000027804	MGI:1914988	protein coding gene	peptidylprolyl isomerase D (cyclophilin D)
3	gene	79.60379	79.62950	negative	MGI_C57BL6J_106100	Etfdh	NCBI_Gene:66841,ENSEMBL:ENSMUSG00000027809	MGI:106100	protein coding gene	electron transferring flavoprotein, dehydrogenase
3	gene	79.61054	79.61183	negative	MGI_C57BL6J_5611201	Gm37973	ENSEMBL:ENSMUSG00000102370	MGI:5611201	unclassified gene	predicted gene, 37973
3	gene	79.62908	79.63282	positive	MGI_C57BL6J_1923189	4930579G24Rik	NCBI_Gene:75939,ENSEMBL:ENSMUSG00000027811	MGI:1923189	protein coding gene	RIKEN cDNA 4930579G24 gene
3	gene	79.64160	79.73795	negative	MGI_C57BL6J_2682211	Rxfp1	NCBI_Gene:381489,ENSEMBL:ENSMUSG00000034009	MGI:2682211	protein coding gene	relaxin/insulin-like family peptide receptor 1
3	gene	79.67337	79.67688	negative	MGI_C57BL6J_5504099	Gm26984	ENSEMBL:ENSMUSG00000098204	MGI:5504099	lncRNA gene	predicted gene, 26984
3	gene	79.81256	79.85279	negative	MGI_C57BL6J_1917902	Tmem144	NCBI_Gene:70652,ENSEMBL:ENSMUSG00000027956	MGI:1917902	protein coding gene	transmembrane protein 144
3	gene	79.83493	79.83504	positive	MGI_C57BL6J_5456197	Gm26420	ENSEMBL:ENSMUSG00000077461	MGI:5456197	snRNA gene	predicted gene, 26420
3	gene	79.85287	79.85666	positive	MGI_C57BL6J_5622958	Gm40073	NCBI_Gene:105244471	MGI:5622958	lncRNA gene	predicted gene, 40073
3	gene	79.85929	79.88681	negative	MGI_C57BL6J_5595728	Gm36569	NCBI_Gene:102640530,ENSEMBL:ENSMUSG00000102191	MGI:5595728	lncRNA gene	predicted gene, 36569
3	gene	79.88447	79.94628	positive	MGI_C57BL6J_1915909	Gask1b	NCBI_Gene:68659,ENSEMBL:ENSMUSG00000027955	MGI:1915909	protein coding gene	golgi associated kinase 1B

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	81.88073	81.88087	positive	MGI_C57BL6J_5452308	Gm22531	ENSEMBL:ENSMUSG00000089444	MGI:5452308	snoRNA gene	predicted gene, 22531
3	gene	81.91659	81.92467	negative	MGI_C57BL6J_3642361	Gm9989	NCBI_Gene:102640985,ENSEMBL:ENSMUSG00000056023	MGI:3642361	lncRNA gene	predicted gene 9989
3	gene	81.93260	81.95673	positive	MGI_C57BL6J_2139628	Ctso	NCBI_Gene:229445,ENSEMBL:ENSMUSG00000028015	MGI:2139628	protein coding gene	cathepsin O
3	gene	81.95709	81.97620	negative	MGI_C57BL6J_1928486	Tdo2	NCBI_Gene:56720,ENSEMBL:ENSMUSG00000028011	MGI:1928486	protein coding gene	tryptophan 2,3-dioxygenase
3	gene	81.98229	82.02123	positive	MGI_C57BL6J_1929259	Asic5	NCBI_Gene:58170,ENSEMBL:ENSMUSG00000028008	MGI:1929259	protein coding gene	acid-sensing (proton-gated) ion channel family member 5
3	gene	82.03200	82.07471	negative	MGI_C57BL6J_1860604	Gucy1b1	NCBI_Gene:54195,ENSEMBL:ENSMUSG00000028005	MGI:1860604	protein coding gene	guanylate cyclase 1, soluble, beta 1
3	gene	82.09243	82.14588	negative	MGI_C57BL6J_1926562	Gucy1a1	NCBI_Gene:60596,ENSEMBL:ENSMUSG00000033910	MGI:1926562	protein coding gene	guanylate cyclase 1, soluble, alpha 1
3	gene	82.10625	82.10631	negative	MGI_C57BL6J_5531411	Mir7010	miRBase:MI0022859,NCBI_Gene:102466991,ENSEMBL:ENSMUSG00000098712	MGI:5531411	miRNA gene	microRNA 7010
3	gene	82.14640	82.23680	negative	MGI_C57BL6J_5589080	Gm29921	NCBI_Gene:102631626	MGI:5589080	lncRNA gene	predicted gene, 29921
3	gene	82.35803	82.39527	positive	MGI_C57BL6J_2442208	Map9	NCBI_Gene:213582,ENSEMBL:ENSMUSG00000033900	MGI:2442208	protein coding gene	microtubule-associated protein 9
3	gene	82.53838	82.54899	negative	MGI_C57BL6J_108418	Npy2r	NCBI_Gene:18167,ENSEMBL:ENSMUSG00000028004	MGI:108418	protein coding gene	neuropeptide Y receptor Y2
3	pseudogene	82.57740	82.57809	positive	MGI_C57BL6J_5594482	Gm35323	NCBI_Gene:102638861,ENSEMBL:ENSMUSG00000102514	MGI:5594482	pseudogene	predicted gene, 35323
3	gene	82.66038	82.66490	negative	MGI_C57BL6J_5589158	Gm29999	NCBI_Gene:102631733,ENSEMBL:ENSMUSG00000102629	MGI:5589158	lncRNA gene	predicted gene, 29999
3	pseudogene	82.67199	82.67257	negative	MGI_C57BL6J_5663484	Gm43347	ENSEMBL:ENSMUSG00000104772	MGI:5663484	pseudogene	predicted gene 43347
3	gene	82.75452	82.75986	positive	MGI_C57BL6J_5589202	Gm30043	ENSEMBL:ENSMUSG00000104898	MGI:5589202	lncRNA gene	predicted gene, 30043
3	gene	82.79366	82.79390	negative	MGI_C57BL6J_5451815	Gm22038	ENSEMBL:ENSMUSG00000087902	MGI:5451815	unclassified non-coding RNA gene	predicted gene, 22038
3	gene	82.79497	82.81223	negative	MGI_C57BL6J_5663485	Gm43348	ENSEMBL:ENSMUSG00000105034	MGI:5663485	lncRNA gene	predicted gene 43348
3	gene	82.83652	82.87648	negative	MGI_C57BL6J_3645057	Rbm46	NCBI_Gene:633285,ENSEMBL:ENSMUSG00000033882	MGI:3645057	protein coding gene	RNA binding motif protein 46
3	gene	82.87671	82.94364	positive	MGI_C57BL6J_1925462	Rbm46os	NCBI_Gene:78212,ENSEMBL:ENSMUSG00000086273	MGI:1925462	antisense lncRNA gene	RNA binding motif protein 46, opposite strand
3	gene	82.89258	82.90397	negative	MGI_C57BL6J_1891259	Lrat	NCBI_Gene:79235,ENSEMBL:ENSMUSG00000028003	MGI:1891259	protein coding gene	lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)
3	gene	82.92666	83.00849	negative	MGI_C57BL6J_5589256	Gm30097	NCBI_Gene:102631873,ENSEMBL:ENSMUSG00000102595	MGI:5589256	lncRNA gene	predicted gene, 30097
3	gene	83.00772	83.01506	positive	MGI_C57BL6J_95526	Fgg	NCBI_Gene:99571,ENSEMBL:ENSMUSG00000033860	MGI:95526	protein coding gene	fibrinogen gamma chain
3	gene	83.02608	83.03363	positive	MGI_C57BL6J_1316726	Fga	NCBI_Gene:14161,ENSEMBL:ENSMUSG00000028001	MGI:1316726	protein coding gene	fibrinogen alpha chain
3	gene	83.03708	83.03897	negative	MGI_C57BL6J_5622960	Gm40075	NCBI_Gene:105244473	MGI:5622960	lncRNA gene	predicted gene, 40075
3	gene	83.04014	83.04986	negative	MGI_C57BL6J_99501	Fgb	NCBI_Gene:110135,ENSEMBL:ENSMUSG00000033831	MGI:99501	protein coding gene	fibrinogen beta chain
3	gene	83.05552	83.07236	positive	MGI_C57BL6J_1858197	Plrg1	NCBI_Gene:53317,ENSEMBL:ENSMUSG00000027998	MGI:1858197	protein coding gene	pleiotropic regulator 1
3	gene	83.12528	83.12925	negative	MGI_C57BL6J_3642896	Gm10710	NCBI_Gene:100038599,ENSEMBL:ENSMUSG00000074517	MGI:3642896	lncRNA gene	predicted gene 10710
3	gene	83.12795	83.35721	positive	MGI_C57BL6J_2685263	Dchs2	NCBI_Gene:100534287,ENSEMBL:ENSMUSG00000102692	MGI:2685263	protein coding gene	dachsous cadherin related 2
3	gene	83.40340	83.40579	positive	MGI_C57BL6J_5611324	Gm38096	ENSEMBL:ENSMUSG00000103459	MGI:5611324	lncRNA gene	predicted gene, 38096
3	gene	83.55536	83.57412	negative	MGI_C57BL6J_1916710	1700028M03Rik	NCBI_Gene:69460,ENSEMBL:ENSMUSG00000101334	MGI:1916710	lncRNA gene	RIKEN cDNA 1700028M03 gene
3	gene	83.59633	83.60109	negative	MGI_C57BL6J_5622961	Gm40076	NCBI_Gene:105244474	MGI:5622961	lncRNA gene	predicted gene, 40076
3	gene	83.63458	83.63487	negative	MGI_C57BL6J_5452119	Gm22342	ENSEMBL:ENSMUSG00000084596	MGI:5452119	unclassified non-coding RNA gene	predicted gene, 22342
3	pseudogene	83.68668	83.68727	positive	MGI_C57BL6J_3781837	Rpl28-ps2	NCBI_Gene:100042091,ENSEMBL:ENSMUSG00000102137	MGI:3781837	pseudogene	ribosomal protein L28, pseudogene 2
3	gene	83.70225	83.70236	positive	MGI_C57BL6J_5454361	Gm24584	ENSEMBL:ENSMUSG00000088597	MGI:5454361	snRNA gene	predicted gene, 24584
3	gene	83.71936	83.72737	negative	MGI_C57BL6J_5589452	Gm30293	NCBI_Gene:102632140	MGI:5589452	lncRNA gene	predicted gene, 30293
3	gene	83.76616	83.77432	positive	MGI_C57BL6J_108078	Sfrp2	NCBI_Gene:20319,ENSEMBL:ENSMUSG00000027996	MGI:108078	protein coding gene	secreted frizzled-related protein 2
3	gene	83.77385	83.78996	negative	MGI_C57BL6J_5477265	Gm26771	ENSEMBL:ENSMUSG00000097250	MGI:5477265	lncRNA gene	predicted gene, 26771
3	pseudogene	83.78973	83.83222	positive	MGI_C57BL6J_3646388	Gm7115	NCBI_Gene:633522,ENSEMBL:ENSMUSG00000104082	MGI:3646388	pseudogene	predicted gene 7115
3	gene	83.83627	83.84182	negative	MGI_C57BL6J_1346060	Tlr2	NCBI_Gene:24088,ENSEMBL:ENSMUSG00000027995	MGI:1346060	protein coding gene	toll-like receptor 2
3	gene	83.89766	84.04018	negative	MGI_C57BL6J_2443399	Tmem131l	NCBI_Gene:229473,ENSEMBL:ENSMUSG00000033767	MGI:2443399	protein coding gene	transmembrane 131 like
3	gene	84.02844	84.02928	positive	MGI_C57BL6J_1922302	4930509B17Rik	NA	NA	unclassified gene	RIKEN cDNA 4930509B17 gene
3	gene	84.04022	84.05210	positive	MGI_C57BL6J_5589511	Gm30352	NCBI_Gene:102632212	MGI:5589511	lncRNA gene	predicted gene, 30352
3	gene	84.05897	84.06345	negative	MGI_C57BL6J_5610209	Gm36981	ENSEMBL:ENSMUSG00000103261	MGI:5610209	unclassified non-coding RNA gene	predicted gene, 36981
3	gene	84.06174	84.06277	positive	MGI_C57BL6J_5589617	Gm30458	NCBI_Gene:102632366	MGI:5589617	lncRNA gene	predicted gene, 30458
3	gene	84.08793	84.15579	negative	MGI_C57BL6J_1924165	Mnd1	NCBI_Gene:76915,ENSEMBL:ENSMUSG00000033752	MGI:1924165	protein coding gene	meiotic nuclear divisions 1
3	gene	84.16044	84.30688	negative	MGI_C57BL6J_1933163	Trim2	NCBI_Gene:80890,ENSEMBL:ENSMUSG00000027993	MGI:1933163	protein coding gene	tripartite motif-containing 2
3	gene	84.17410	84.17519	positive	MGI_C57BL6J_3648757	Gm6525	NCBI_Gene:624713,ENSEMBL:ENSMUSG00000104043	MGI:3648757	protein coding gene	predicted pseudogene 6525
3	gene	84.22869	84.24704	positive	MGI_C57BL6J_5622963	Gm40078	NCBI_Gene:105244477	MGI:5622963	lncRNA gene	predicted gene, 40078
3	gene	84.22901	84.22908	negative	MGI_C57BL6J_4413878	n-TGgcc9	NCBI_Gene:102467313	MGI:4413878	tRNA gene	nuclear encoded tRNA glycine 9 (anticodon GCC)
3	gene	84.30298	84.30542	negative	MGI_C57BL6J_2443303	C630001G18Rik	NA	NA	unclassified gene	RIKEN cDNA C630001G18 gene
3	gene	84.34938	84.37992	negative	MGI_C57BL6J_1922559	4930565D16Rik	NCBI_Gene:75309,ENSEMBL:ENSMUSG00000104004	MGI:1922559	lncRNA gene	RIKEN cDNA 4930565D16 gene
3	gene	84.44219	84.48044	negative	MGI_C57BL6J_2684972	Fhdc1	NCBI_Gene:229474,ENSEMBL:ENSMUSG00000041842	MGI:2684972	protein coding gene	FH2 domain containing 1
3	gene	84.49609	84.58283	negative	MGI_C57BL6J_1277120	Arfip1	NCBI_Gene:99889,ENSEMBL:ENSMUSG00000074513	MGI:1277120	protein coding gene	ADP-ribosylation factor interacting protein 1
3	gene	84.49643	85.88752	negative	MGI_C57BL6J_5610468	Gm37240	ENSEMBL:ENSMUSG00000102805	MGI:5610468	protein coding gene	predicted gene, 37240
3	pseudogene	84.55266	84.55348	negative	MGI_C57BL6J_3645282	Gm8813	NCBI_Gene:667788,ENSEMBL:ENSMUSG00000085625	MGI:3645282	pseudogene	predicted gene 8813
3	pseudogene	84.55689	84.55779	negative	MGI_C57BL6J_5611469	Gm38241	ENSEMBL:ENSMUSG00000103741	MGI:5611469	pseudogene	predicted gene, 38241
3	gene	84.58269	84.58510	positive	MGI_C57BL6J_5594569	Gm35410	NA	NA	protein coding gene	predicted gene%2c 35410
3	gene	84.59357	84.59703	positive	MGI_C57BL6J_2685264	Tigd4	NCBI_Gene:403175,ENSEMBL:ENSMUSG00000047819	MGI:2685264	protein coding gene	tigger transposable element derived 4
3	gene	84.60406	84.61617	positive	MGI_C57BL6J_5826473	Gm46836	NCBI_Gene:108168918	MGI:5826473	lncRNA gene	predicted gene, 46836
3	gene	84.66619	84.70458	positive	MGI_C57BL6J_2444725	Tmem154	NCBI_Gene:320782,ENSEMBL:ENSMUSG00000056498	MGI:2444725	protein coding gene	transmembrane protein 154
3	gene	84.74497	84.79221	positive	MGI_C57BL6J_5622964	Gm40079	NCBI_Gene:105244478	MGI:5622964	lncRNA gene	predicted gene, 40079
3	gene	84.80979	84.81252	negative	MGI_C57BL6J_5594645	Gm35486	NA	NA	protein coding gene	predicted gene%2c 35486
3	gene	84.81216	84.97920	positive	MGI_C57BL6J_1354695	Fbxw7	NCBI_Gene:50754,ENSEMBL:ENSMUSG00000028086	MGI:1354695	protein coding gene	F-box and WD-40 domain protein 7
3	gene	84.84197	84.88484	negative	MGI_C57BL6J_5622965	Gm40080	NCBI_Gene:105244479	MGI:5622965	lncRNA gene	predicted gene, 40080
3	gene	84.87389	84.87778	positive	MGI_C57BL6J_5610954	Gm37726	ENSEMBL:ENSMUSG00000102919	MGI:5610954	unclassified gene	predicted gene, 37726
3	pseudogene	84.91290	84.91343	negative	MGI_C57BL6J_5826445	Gm46808	NCBI_Gene:108168875	MGI:5826445	pseudogene	predicted gene, 46808
3	gene	84.96506	84.96558	negative	MGI_C57BL6J_3614654	Fbxw7as1	NCBI_Gene:654362	MGI:3614654	antisense lncRNA gene	F-box and WD-40 domain protein 7 antisense transcript 1
3	gene	85.02169	85.02857	positive	MGI_C57BL6J_5590103	Gm30944	NCBI_Gene:102633014	MGI:5590103	lncRNA gene	predicted gene, 30944
3	gene	85.04914	85.10790	positive	MGI_C57BL6J_5590150	Gm30991	NCBI_Gene:102633077	MGI:5590150	lncRNA gene	predicted gene, 30991
3	gene	85.11498	85.12251	negative	MGI_C57BL6J_5590255	Gm31096	NCBI_Gene:102633209	MGI:5590255	lncRNA gene	predicted gene, 31096
3	pseudogene	85.15204	85.15270	negative	MGI_C57BL6J_5611269	Gm38041	ENSEMBL:ENSMUSG00000104290	MGI:5611269	pseudogene	predicted gene, 38041
3	gene	85.19518	85.19645	negative	MGI_C57BL6J_5611541	Gm38313	ENSEMBL:ENSMUSG00000102703	MGI:5611541	unclassified gene	predicted gene, 38313
3	gene	85.31752	85.33203	positive	MGI_C57BL6J_1920533	1700036G14Rik	NCBI_Gene:73283,ENSEMBL:ENSMUSG00000099995	MGI:1920533	lncRNA gene	RIKEN cDNA 1700036G14 gene
3	gene	85.34212	85.34341	positive	MGI_C57BL6J_5590369	Gm31210	NCBI_Gene:102633368	MGI:5590369	lncRNA gene	predicted gene, 31210
3	gene	85.39154	85.40210	negative	MGI_C57BL6J_5590518	Gm31359	NCBI_Gene:102633563	MGI:5590518	lncRNA gene	predicted gene, 31359
3	gene	85.39752	85.42813	negative	MGI_C57BL6J_5662950	Gm42813	ENSEMBL:ENSMUSG00000105012	MGI:5662950	lncRNA gene	predicted gene 42813
3	gene	85.40563	85.41035	positive	MGI_C57BL6J_5590463	Gm31304	NCBI_Gene:102633491	MGI:5590463	lncRNA gene	predicted gene, 31304
3	gene	85.42727	85.49180	negative	MGI_C57BL6J_5590578	Gm31419	NCBI_Gene:102633638	MGI:5590578	lncRNA gene	predicted gene, 31419
3	gene	85.43519	85.46613	negative	MGI_C57BL6J_5804905	Gm45790	ENSEMBL:ENSMUSG00000110441	MGI:5804905	lncRNA gene	predicted gene 45790
3	gene	85.46738	85.46750	positive	MGI_C57BL6J_3783377	Mir466k	miRBase:MI0006292,NCBI_Gene:100316670,ENSEMBL:ENSMUSG00000080424	MGI:3783377	miRNA gene	microRNA 466k
3	gene	85.52989	85.57399	negative	MGI_C57BL6J_3781915	Gm3740	NCBI_Gene:100042237	MGI:3781915	unclassified gene	predicted gene 3740
3	gene	85.54432	85.55339	negative	MGI_C57BL6J_5662949	Gm42812	ENSEMBL:ENSMUSG00000106422	MGI:5662949	lncRNA gene	predicted gene 42812
3	gene	85.55605	85.57394	negative	MGI_C57BL6J_3782983	Gm15535	ENSEMBL:ENSMUSG00000085527	MGI:3782983	lncRNA gene	predicted gene 15535
3	gene	85.57410	85.65562	positive	MGI_C57BL6J_2442496	Gatb	NCBI_Gene:229487,ENSEMBL:ENSMUSG00000028085	MGI:2442496	protein coding gene	glutamyl-tRNA(Gln) amidotransferase, subunit B
3	gene	85.57751	85.58983	positive	MGI_C57BL6J_5826446	Gm46809	NCBI_Gene:108168876	MGI:5826446	lncRNA gene	predicted gene, 46809
3	gene	85.66006	85.81729	negative	MGI_C57BL6J_2444746	Fam160a1	NCBI_Gene:229488,ENSEMBL:ENSMUSG00000051000	MGI:2444746	protein coding gene	family with sequence similarity 160, member A1
3	gene	85.71273	85.71776	positive	MGI_C57BL6J_5622967	Gm40082	NCBI_Gene:105244481	MGI:5622967	lncRNA gene	predicted gene, 40082
3	pseudogene	85.78523	85.78600	positive	MGI_C57BL6J_5011253	Gm19068	NCBI_Gene:100418195	MGI:5011253	pseudogene	predicted gene, 19068
3	gene	85.86985	85.88752	negative	MGI_C57BL6J_2443773	Glt28d2	NCBI_Gene:320302,ENSEMBL:ENSMUSG00000031286	MGI:2443773	protein coding gene	glycosyltransferase 28 domain containing 2
3	gene	85.88769	85.88923	positive	MGI_C57BL6J_1918440	4933425M03Rik	ENSEMBL:ENSMUSG00000106508	MGI:1918440	unclassified gene	RIKEN cDNA 4933425M03 gene
3	gene	85.90835	85.90846	negative	MGI_C57BL6J_5455981	Gm26204	ENSEMBL:ENSMUSG00000064840	MGI:5455981	snRNA gene	predicted gene, 26204
3	pseudogene	85.91464	85.91512	positive	MGI_C57BL6J_5611258	Gm38030	ENSEMBL:ENSMUSG00000103993	MGI:5611258	pseudogene	predicted gene, 38030
3	pseudogene	85.91571	85.91617	positive	MGI_C57BL6J_3704221	Gm9790	NCBI_Gene:100042265,ENSEMBL:ENSMUSG00000044330	MGI:3704221	pseudogene	predicted gene 9790
3	gene	85.95089	85.95101	positive	MGI_C57BL6J_5455653	Gm25876	ENSEMBL:ENSMUSG00000077517	MGI:5455653	snoRNA gene	predicted gene, 25876
3	gene	85.96277	85.96283	negative	MGI_C57BL6J_5454278	Gm24501	ENSEMBL:ENSMUSG00000089077	MGI:5454278	snRNA gene	predicted gene, 24501
3	gene	85.96285	85.96291	negative	MGI_C57BL6J_5531193	Gm27811	ENSEMBL:ENSMUSG00000098444	MGI:5531193	snRNA gene	predicted gene, 27811
3	gene	85.97095	86.13053	positive	MGI_C57BL6J_1350923	Sh3d19	NCBI_Gene:27059,ENSEMBL:ENSMUSG00000028082	MGI:1350923	protein coding gene	SH3 domain protein D19
3	gene	85.99371	86.00912	negative	MGI_C57BL6J_2685865	Prss48	NCBI_Gene:368202,ENSEMBL:ENSMUSG00000049013	MGI:2685865	protein coding gene	protease, serine 48
3	gene	86.10053	86.10066	positive	MGI_C57BL6J_5454965	Gm25188	ENSEMBL:ENSMUSG00000065847	MGI:5454965	snoRNA gene	predicted gene, 25188
3	gene	86.13794	86.14270	negative	MGI_C57BL6J_1202063	Rps3a1	NCBI_Gene:20091,ENSEMBL:ENSMUSG00000028081	MGI:1202063	protein coding gene	ribosomal protein S3A1
3	gene	86.13879	86.13886	negative	MGI_C57BL6J_1321388	Snord73a	NCBI_Gene:19870,ENSEMBL:ENSMUSG00000064984	MGI:1321388	snoRNA gene	small nucleolar RNA, C/D box U73A
3	gene	86.14062	86.14069	negative	MGI_C57BL6J_1321387	Rnu73b	NCBI_Gene:19871,ENSEMBL:ENSMUSG00000064390	MGI:1321387	snoRNA gene	U73B small nuclear RNA
3	gene	86.14276	86.14554	positive	MGI_C57BL6J_5611161	Gm37933	ENSEMBL:ENSMUSG00000103408	MGI:5611161	lncRNA gene	predicted gene, 37933
3	pseudogene	86.14494	86.14537	negative	MGI_C57BL6J_5610721	Gm37493	ENSEMBL:ENSMUSG00000102218	MGI:5610721	pseudogene	predicted gene, 37493
3	gene	86.19142	86.19153	positive	MGI_C57BL6J_5452802	Gm23025	ENSEMBL:ENSMUSG00000089394	MGI:5452802	snRNA gene	predicted gene, 23025
3	gene	86.22390	86.78269	positive	MGI_C57BL6J_1933162	Lrba	NCBI_Gene:80877,ENSEMBL:ENSMUSG00000028080	MGI:1933162	protein coding gene	LPS-responsive beige-like anchor
3	pseudogene	86.26324	86.26358	negative	MGI_C57BL6J_5610516	Gm37288	ENSEMBL:ENSMUSG00000103759	MGI:5610516	pseudogene	predicted gene, 37288
3	gene	86.26765	86.26867	positive	MGI_C57BL6J_1924676	9430099H24Rik	NA	NA	unclassified gene	RIKEN cDNA 9430099H24 gene
3	gene	86.27523	86.27536	negative	MGI_C57BL6J_5456120	Gm26343	ENSEMBL:ENSMUSG00000077744	MGI:5456120	snoRNA gene	predicted gene, 26343
3	gene	86.35202	86.36244	negative	MGI_C57BL6J_5622968	Gm40083	NCBI_Gene:105244482	MGI:5622968	lncRNA gene	predicted gene, 40083
3	gene	86.36249	86.36358	negative	MGI_C57BL6J_1924912	9030218A15Rik	NA	NA	unclassified gene	RIKEN cDNA 9030218A15 gene
3	gene	86.36446	86.36463	positive	MGI_C57BL6J_5453627	Gm23850	ENSEMBL:ENSMUSG00000065764	MGI:5453627	snRNA gene	predicted gene, 23850
3	gene	86.38425	86.38435	positive	MGI_C57BL6J_5454816	Gm25039	ENSEMBL:ENSMUSG00000064867	MGI:5454816	snRNA gene	predicted gene, 25039
3	gene	86.52442	86.55872	negative	MGI_C57BL6J_5590836	Gm31677	NCBI_Gene:102633984	MGI:5590836	lncRNA gene	predicted gene, 31677
3	gene	86.54558	86.54863	negative	MGI_C57BL6J_1346022	Mab21l2	NCBI_Gene:23937,ENSEMBL:ENSMUSG00000057777	MGI:1346022	protein coding gene	mab-21-like 2
3	pseudogene	86.67177	86.67224	negative	MGI_C57BL6J_3781961	Gm3788	NCBI_Gene:100042319,ENSEMBL:ENSMUSG00000094392	MGI:3781961	pseudogene	predicted gene 3788
3	gene	86.76807	86.77865	negative	MGI_C57BL6J_5611104	Gm37876	ENSEMBL:ENSMUSG00000104108	MGI:5611104	lncRNA gene	predicted gene, 37876
3	gene	86.78615	86.92088	negative	MGI_C57BL6J_1918012	Dclk2	NCBI_Gene:70762,ENSEMBL:ENSMUSG00000028078	MGI:1918012	protein coding gene	doublecortin-like kinase 2
3	gene	86.82565	86.82710	negative	MGI_C57BL6J_5826447	Gm46810	NCBI_Gene:108168877	MGI:5826447	lncRNA gene	predicted gene, 46810
3	pseudogene	86.86449	86.86532	positive	MGI_C57BL6J_5610253	Gm37025	ENSEMBL:ENSMUSG00000104074	MGI:5610253	pseudogene	predicted gene, 37025
3	gene	86.93074	86.93090	positive	MGI_C57BL6J_5453153	Gm23376	ENSEMBL:ENSMUSG00000064872	MGI:5453153	snRNA gene	predicted gene, 23376
3	pseudogene	86.93337	86.93366	negative	MGI_C57BL6J_5610435	Gm37207	ENSEMBL:ENSMUSG00000103650	MGI:5610435	pseudogene	predicted gene, 37207
3	pseudogene	86.98655	86.98978	positive	MGI_C57BL6J_107675	Cd1d2	NCBI_Gene:12480,ENSEMBL:ENSMUSG00000041750	MGI:107675	polymorphic pseudogene	CD1d2 antigen
3	gene	86.99583	86.99944	negative	MGI_C57BL6J_107674	Cd1d1	NCBI_Gene:12479,ENSEMBL:ENSMUSG00000028076	MGI:107674	protein coding gene	CD1d1 antigen
3	pseudogene	87.02286	87.02396	negative	MGI_C57BL6J_3644826	Gm8869	NCBI_Gene:667897,ENSEMBL:ENSMUSG00000104265	MGI:3644826	pseudogene	predicted gene 8869
3	pseudogene	87.05436	87.05500	positive	MGI_C57BL6J_5010588	Gm18403	NCBI_Gene:100417112,ENSEMBL:ENSMUSG00000103913	MGI:5010588	pseudogene	predicted gene, 18403
3	pseudogene	87.06012	87.06043	positive	MGI_C57BL6J_5610803	Gm37575	ENSEMBL:ENSMUSG00000102394	MGI:5610803	pseudogene	predicted gene, 37575
3	gene	87.06689	87.06702	positive	MGI_C57BL6J_5454249	Gm24472	ENSEMBL:ENSMUSG00000077672	MGI:5454249	snoRNA gene	predicted gene, 24472
3	gene	87.07859	87.17475	negative	MGI_C57BL6J_1891396	Kirrel	NCBI_Gene:170643,ENSEMBL:ENSMUSG00000041734	MGI:1891396	protein coding gene	kirre like nephrin family adhesion molecule 1
3	gene	87.11060	87.11222	negative	MGI_C57BL6J_5011567	Gm19382	NA	NA	unclassified gene	predicted gene%2c 19382
3	gene	87.15769	87.16245	positive	MGI_C57BL6J_5611083	Gm37855	ENSEMBL:ENSMUSG00000102893	MGI:5611083	lncRNA gene	predicted gene, 37855
3	pseudogene	87.20734	87.20803	negative	MGI_C57BL6J_3708678	Gm10705	NCBI_Gene:100042355,ENSEMBL:ENSMUSG00000074506	MGI:3708678	pseudogene	predicted gene 10705
3	gene	87.25076	87.26377	negative	MGI_C57BL6J_1933397	Fcrls	NCBI_Gene:80891,ENSEMBL:ENSMUSG00000015852	MGI:1933397	protein coding gene	Fc receptor-like S, scavenger receptor
3	gene	87.29034	87.30091	positive	MGI_C57BL6J_5591038	Gm31879	NCBI_Gene:102634249	MGI:5591038	lncRNA gene	predicted gene, 31879
3	gene	87.35400	87.37760	negative	MGI_C57BL6J_5591099	Gm31940	NCBI_Gene:102634332	MGI:5591099	lncRNA gene	predicted gene, 31940
3	gene	87.35788	87.37107	positive	MGI_C57BL6J_1334419	Cd5l	NCBI_Gene:11801,ENSEMBL:ENSMUSG00000015854	MGI:1334419	protein coding gene	CD5 antigen-like
3	gene	87.37634	87.40397	positive	MGI_C57BL6J_2442862	Fcrl1	NCBI_Gene:229499,ENSEMBL:ENSMUSG00000059994	MGI:2442862	protein coding gene	Fc receptor-like 1
3	gene	87.41141	87.41479	positive	MGI_C57BL6J_5622969	Gm40084	NCBI_Gene:105244483	MGI:5622969	lncRNA gene	predicted gene, 40084
3	gene	87.43577	87.50068	positive	MGI_C57BL6J_3053558	Fcrl5	NCBI_Gene:329693,ENSEMBL:ENSMUSG00000048031	MGI:3053558	protein coding gene	Fc receptor-like 5
3	gene	87.48702	87.51219	negative	MGI_C57BL6J_5622970	Gm40085	NCBI_Gene:105244484	MGI:5622970	lncRNA gene	predicted gene, 40085
3	gene	87.50853	87.51318	positive	MGI_C57BL6J_5591157	Gm31998	NCBI_Gene:102634410	MGI:5591157	lncRNA gene	predicted gene, 31998
3	gene	87.52541	87.54016	positive	MGI_C57BL6J_1350926	Etv3	NCBI_Gene:27049,ENSEMBL:ENSMUSG00000003382	MGI:1350926	protein coding gene	ets variant 3
3	gene	87.54988	87.56110	positive	MGI_C57BL6J_3646099	Etv3l	NCBI_Gene:546801,ENSEMBL:ENSMUSG00000104058	MGI:3646099	protein coding gene	ets variant 3-like
3	gene	87.58267	87.58279	negative	MGI_C57BL6J_5454944	Gm25167	ENSEMBL:ENSMUSG00000077376	MGI:5454944	snoRNA gene	predicted gene, 25167
3	gene	87.61740	87.61750	positive	MGI_C57BL6J_5453886	Gm24109	ENSEMBL:ENSMUSG00000093230	MGI:5453886	miRNA gene	predicted gene, 24109
3	gene	87.61755	87.73803	positive	MGI_C57BL6J_2441869	Arhgef11	NCBI_Gene:213498,ENSEMBL:ENSMUSG00000041977	MGI:2441869	protein coding gene	Rho guanine nucleotide exchange factor (GEF) 11
3	pseudogene	87.64843	87.64867	negative	MGI_C57BL6J_5011427	Gm19242	NCBI_Gene:100462734	MGI:5011427	pseudogene	predicted gene, 19242
3	gene	87.67964	87.68003	negative	MGI_C57BL6J_3644100	Gm6570	NCBI_Gene:625281	MGI:3644100	protein coding gene	predicted gene 6570
3	gene	87.73692	87.74863	negative	MGI_C57BL6J_1921735	Lrrc71	NCBI_Gene:74485,ENSEMBL:ENSMUSG00000023084	MGI:1921735	protein coding gene	leucine rich repeat containing 71
3	gene	87.74789	87.82431	negative	MGI_C57BL6J_1920432	Pear1	NCBI_Gene:73182,ENSEMBL:ENSMUSG00000028073	MGI:1920432	protein coding gene	platelet endothelial aggregation receptor 1
3	gene	87.77824	87.79524	negative	MGI_C57BL6J_97383	Ntrk1	NCBI_Gene:18211,ENSEMBL:ENSMUSG00000028072	MGI:97383	protein coding gene	neurotrophic tyrosine kinase, receptor, type 1
3	gene	87.79691	87.81610	positive	MGI_C57BL6J_1346037	Insrr	NCBI_Gene:23920,ENSEMBL:ENSMUSG00000005640	MGI:1346037	protein coding gene	insulin receptor-related receptor
3	gene	87.82054	87.82307	positive	MGI_C57BL6J_5622971	Gm40086	NCBI_Gene:105244485	MGI:5622971	lncRNA gene	predicted gene, 40086
3	gene	87.82475	87.83127	positive	MGI_C57BL6J_5591629	Gm32470	NCBI_Gene:105244486	MGI:5591629	lncRNA gene	predicted gene, 32470
3	gene	87.84676	87.85572	positive	MGI_C57BL6J_1351596	Sh2d2a	NCBI_Gene:27371,ENSEMBL:ENSMUSG00000028071	MGI:1351596	protein coding gene	SH2 domain containing 2A
3	gene	87.85890	87.88561	negative	MGI_C57BL6J_2137738	Prcc	NCBI_Gene:94315,ENSEMBL:ENSMUSG00000004895	MGI:2137738	protein coding gene	papillary renal cell carcinoma (translocation-associated)
3	gene	87.90632	87.91613	positive	MGI_C57BL6J_1194494	Hdgf	NCBI_Gene:15191,ENSEMBL:ENSMUSG00000004897	MGI:1194494	protein coding gene	heparin binding growth factor
3	gene	87.91813	87.92367	positive	MGI_C57BL6J_1914957	Mrpl24	NCBI_Gene:67707,ENSEMBL:ENSMUSG00000019710	MGI:1914957	protein coding gene	mitochondrial ribosomal protein L24
3	gene	87.92260	87.93072	negative	MGI_C57BL6J_2387197	Rrnad1	NCBI_Gene:229503,ENSEMBL:ENSMUSG00000004896	MGI:2387197	protein coding gene	ribosomal RNA adenine dimethylase domain containing 1
3	gene	87.93031	87.94069	positive	MGI_C57BL6J_2140076	Isg20l2	NCBI_Gene:229504,ENSEMBL:ENSMUSG00000048039	MGI:2140076	protein coding gene	interferon stimulated exonuclease gene 20-like 2
3	gene	87.94867	87.95338	positive	MGI_C57BL6J_88491	Crabp2	NCBI_Gene:12904,ENSEMBL:ENSMUSG00000004885	MGI:88491	protein coding gene	cellular retinoic acid binding protein II
3	gene	87.96008	87.96573	positive	MGI_C57BL6J_5591677	Gm32518	NCBI_Gene:102635095	MGI:5591677	lncRNA gene	predicted gene, 32518
3	pseudogene	87.96676	87.96869	positive	MGI_C57BL6J_3781920	Gm3745	NCBI_Gene:100042242,ENSEMBL:ENSMUSG00000103792	MGI:3781920	pseudogene	predicted gene 3745
3	gene	87.97108	87.98045	positive	MGI_C57BL6J_101784	Nes	NCBI_Gene:18008,ENSEMBL:ENSMUSG00000004891	MGI:101784	protein coding gene	nestin
3	gene	87.98753	88.00089	negative	MGI_C57BL6J_1096385	Bcan	NCBI_Gene:12032,ENSEMBL:ENSMUSG00000004892	MGI:1096385	protein coding gene	brevican
3	gene	88.02056	88.02758	negative	MGI_C57BL6J_2137300	Hapln2	NCBI_Gene:73940,ENSEMBL:ENSMUSG00000004894	MGI:2137300	protein coding gene	hyaluronan and proteoglycan link protein 2
3	gene	88.03078	88.03621	positive	MGI_C57BL6J_5011624	Gm19439	NCBI_Gene:105244487,ENSEMBL:ENSMUSG00000105843	MGI:5011624	lncRNA gene	predicted gene, 19439
3	gene	88.04311	88.05599	positive	MGI_C57BL6J_1913864	Gpatch4	NCBI_Gene:66614,ENSEMBL:ENSMUSG00000028069	MGI:1913864	protein coding gene	G patch domain containing 4
3	gene	88.05652	88.05854	negative	MGI_C57BL6J_2180167	Naxe	NCBI_Gene:246703,ENSEMBL:ENSMUSG00000028070	MGI:2180167	protein coding gene	NAD(P)HX epimerase
3	gene	88.06941	88.07830	negative	MGI_C57BL6J_2443841	Ttc24	NCBI_Gene:214191,ENSEMBL:ENSMUSG00000051036	MGI:2443841	protein coding gene	tetratricopeptide repeat domain 24
3	gene	88.08197	88.12105	positive	MGI_C57BL6J_3028642	Iqgap3	NCBI_Gene:404710,ENSEMBL:ENSMUSG00000028068	MGI:3028642	protein coding gene	IQ motif containing GTPase activating protein 3
3	gene	88.13352	88.13842	positive	MGI_C57BL6J_5622972	Gm40087	NCBI_Gene:105244489	MGI:5622972	lncRNA gene	predicted gene, 40087
3	gene	88.14197	88.17209	positive	MGI_C57BL6J_99533	Mef2d	NCBI_Gene:17261,ENSEMBL:ENSMUSG00000001419	MGI:99533	protein coding gene	myocyte enhancer factor 2D
3	gene	88.17156	88.17779	negative	MGI_C57BL6J_1923892	1700113A16Rik	NCBI_Gene:76642,ENSEMBL:ENSMUSG00000096935	MGI:1923892	lncRNA gene	RIKEN cDNA 1700113A16 gene
3	gene	88.19910	88.20459	negative	MGI_C57BL6J_2139818	AI849053	ENSEMBL:ENSMUSG00000097280	MGI:2139818	lncRNA gene	expressed sequence AI849053
3	gene	88.20020	88.20348	positive	MGI_C57BL6J_2139951	AW047730	NCBI_Gene:99870,ENSEMBL:ENSMUSG00000097428	MGI:2139951	lncRNA gene	expressed sequence AW047730
3	gene	88.20577	88.22996	positive	MGI_C57BL6J_3781938	Gm3764	NCBI_Gene:100042277,ENSEMBL:ENSMUSG00000097156	MGI:3781938	lncRNA gene	predicted gene 3764
3	gene	88.21517	88.21526	positive	MGI_C57BL6J_4834307	Mir3093	miRBase:MI0014086,NCBI_Gene:100526540,ENSEMBL:ENSMUSG00000092988	MGI:4834307	miRNA gene	microRNA 3093
3	gene	88.21559	88.21570	negative	MGI_C57BL6J_5455418	Gm25641	ENSEMBL:ENSMUSG00000092876	MGI:5455418	miRNA gene	predicted gene, 25641
3	gene	88.21560	88.21569	positive	MGI_C57BL6J_2676911	Mir9-1	miRBase:MI0000720,NCBI_Gene:387133,ENSEMBL:ENSMUSG00000106493	MGI:2676911	miRNA gene	microRNA 9-1
3	gene	88.22741	88.23234	negative	MGI_C57BL6J_1918213	4931402H11Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 4931402H11 gene
3	gene	88.24287	88.25474	negative	MGI_C57BL6J_1927379	Rhbg	NCBI_Gene:58176,ENSEMBL:ENSMUSG00000104445	MGI:1927379	protein coding gene	Rhesus blood group-associated B glycoprotein
3	gene	88.24338	88.28721	negative	MGI_C57BL6J_5613632	Gm38392	ENSEMBL:ENSMUSG00000103766	MGI:5613632	protein coding gene	predicted gene, 38392
3	gene	88.28275	88.29701	negative	MGI_C57BL6J_1924177	Tsacc	NCBI_Gene:76927,ENSEMBL:ENSMUSG00000010538	MGI:1924177	protein coding gene	TSSK6 activating co-chaperone
3	pseudogene	88.28461	88.28475	negative	MGI_C57BL6J_5610344	Gm37116	ENSEMBL:ENSMUSG00000103574	MGI:5610344	pseudogene	predicted gene, 37116
3	gene	88.29712	88.32177	positive	MGI_C57BL6J_104708	Cct3	NCBI_Gene:12462,ENSEMBL:ENSMUSG00000001416	MGI:104708	protein coding gene	chaperonin containing Tcp1, subunit 3 (gamma)
3	gene	88.32502	88.33131	positive	MGI_C57BL6J_1913318	Glmp	NCBI_Gene:56700,ENSEMBL:ENSMUSG00000001418	MGI:1913318	protein coding gene	glycosylated lysosomal membrane protein
3	gene	88.32865	88.33615	negative	MGI_C57BL6J_1919163	Tmem79	NCBI_Gene:71913,ENSEMBL:ENSMUSG00000001420	MGI:1919163	protein coding gene	transmembrane protein 79
3	gene	88.33474	88.33618	negative	MGI_C57BL6J_3040675	BC038331	NA	NA	unclassified gene	cDNA sequence BC038331
3	gene	88.33626	88.36234	positive	MGI_C57BL6J_2447364	Smg5	NCBI_Gene:229512,ENSEMBL:ENSMUSG00000001415	MGI:2447364	protein coding gene	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
3	gene	88.36407	88.36854	positive	MGI_C57BL6J_1916207	Paqr6	NCBI_Gene:68957,ENSEMBL:ENSMUSG00000041423	MGI:1916207	protein coding gene	progestin and adipoQ receptor family member VI
3	gene	88.36862	88.37274	negative	MGI_C57BL6J_88155	Bglap3	NCBI_Gene:12095,ENSEMBL:ENSMUSG00000074489	MGI:88155	protein coding gene	bone gamma-carboxyglutamate protein 3
3	pseudogene	88.37581	88.38293	positive	MGI_C57BL6J_5439425	Gm21956	NCBI_Gene:101055651,NCBI_Gene:108168878,ENSEMBL:ENSMUSG00000096792	MGI:5439425	pseudogene	predicted gene, 21956
3	gene	88.37774	88.37870	negative	MGI_C57BL6J_88157	Bglap2	NCBI_Gene:12097,ENSEMBL:ENSMUSG00000074486	MGI:88157	protein coding gene	bone gamma-carboxyglutamate protein 2
3	pseudogene	88.38163	88.38293	positive	MGI_C57BL6J_3779634	Gm6821	NCBI_Gene:101055651,ENSEMBL:ENSMUSG00000078691	MGI:3779634	pseudogene	predicted gene 6821
3	gene	88.38349	88.38447	negative	MGI_C57BL6J_88156	Bglap	NCBI_Gene:12096,ENSEMBL:ENSMUSG00000074483	MGI:88156	protein coding gene	bone gamma carboxyglutamate protein
3	gene	88.39414	88.41040	negative	MGI_C57BL6J_1914287	Pmf1	NCBI_Gene:67037,ENSEMBL:ENSMUSG00000028066	MGI:1914287	protein coding gene	polyamine-modulated factor 1
3	gene	88.41049	88.42514	negative	MGI_C57BL6J_2444391	Slc25a44	NCBI_Gene:229517,ENSEMBL:ENSMUSG00000050144	MGI:2444391	protein coding gene	solute carrier family 25, member 44
3	gene	88.42508	88.42867	positive	MGI_C57BL6J_5592672	Gm33513	NCBI_Gene:102636453	MGI:5592672	lncRNA gene	predicted gene, 33513
3	pseudogene	88.42894	88.42939	positive	MGI_C57BL6J_5662951	Gm42814	ENSEMBL:ENSMUSG00000106568	MGI:5662951	pseudogene	predicted gene 42814
3	gene	88.43596	88.46118	negative	MGI_C57BL6J_107560	Sema4a	NCBI_Gene:20351,ENSEMBL:ENSMUSG00000028064	MGI:107560	protein coding gene	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
3	gene	88.44088	88.44095	negative	MGI_C57BL6J_5531059	Mir7011	miRBase:MI0022860,NCBI_Gene:102465611,ENSEMBL:ENSMUSG00000098655	MGI:5531059	miRNA gene	microRNA 7011
3	gene	88.46209	88.46613	negative	MGI_C57BL6J_5622974	Gm40089	NCBI_Gene:105244492	MGI:5622974	lncRNA gene	predicted gene, 40089
3	pseudogene	88.47454	88.47535	positive	MGI_C57BL6J_3643641	Gm5979	NCBI_Gene:546802,ENSEMBL:ENSMUSG00000103304	MGI:3643641	pseudogene	predicted gene 5979
3	gene	88.48015	88.50996	negative	MGI_C57BL6J_96794	Lmna	NCBI_Gene:16905,ENSEMBL:ENSMUSG00000028063	MGI:96794	protein coding gene	lamin A
3	gene	88.52607	88.52736	negative	MGI_C57BL6J_5610812	Gm37584	ENSEMBL:ENSMUSG00000103115	MGI:5610812	lncRNA gene	predicted gene, 37584
3	gene	88.52927	88.53179	negative	MGI_C57BL6J_5621503	Gm38618	NCBI_Gene:102642612	MGI:5621503	lncRNA gene	predicted gene, 38618
3	gene	88.53239	88.54140	positive	MGI_C57BL6J_1919890	Mex3a	NCBI_Gene:72640,ENSEMBL:ENSMUSG00000074480	MGI:1919890	protein coding gene	mex3 RNA binding family member A
3	gene	88.53630	88.53638	negative	MGI_C57BL6J_3811408	Mir1905	miRBase:MI0008315,NCBI_Gene:100316808,ENSEMBL:ENSMUSG00000084728	MGI:3811408	miRNA gene	microRNA 1905
3	gene	88.54203	88.54830	negative	MGI_C57BL6J_1858203	Rab25	NCBI_Gene:53868,ENSEMBL:ENSMUSG00000008601	MGI:1858203	protein coding gene	RAB25, member RAS oncogene family
3	gene	88.54982	88.55307	negative	MGI_C57BL6J_1932697	Lamtor2	NCBI_Gene:83409,ENSEMBL:ENSMUSG00000028062	MGI:1932697	protein coding gene	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
3	gene	88.55368	88.56973	positive	MGI_C57BL6J_2150152	Ubqln4	NCBI_Gene:94232,ENSEMBL:ENSMUSG00000008604	MGI:2150152	protein coding gene	ubiquilin 4
3	gene	88.57588	88.58842	positive	MGI_C57BL6J_1913506	Ssr2	NCBI_Gene:66256,ENSEMBL:ENSMUSG00000041355	MGI:1913506	protein coding gene	signal sequence receptor, beta
3	pseudogene	88.57624	88.57720	negative	MGI_C57BL6J_3642446	Rtraf-ps	NCBI_Gene:545536,ENSEMBL:ENSMUSG00000074479	MGI:3642446	pseudogene	RNA transcription, translation and transport factor, pseudogene
3	gene	88.59311	88.64953	positive	MGI_C57BL6J_103264	Arhgef2	NCBI_Gene:16800,ENSEMBL:ENSMUSG00000028059	MGI:103264	protein coding gene	rho/rac guanine nucleotide exchange factor (GEF) 2
3	gene	88.60667	88.60722	negative	MGI_C57BL6J_5622975	Gm40090	NCBI_Gene:105244493	MGI:5622975	lncRNA gene	predicted gene, 40090
3	gene	88.61646	88.62111	negative	MGI_C57BL6J_5313099	Gm20652	NCBI_Gene:102636610,ENSEMBL:ENSMUSG00000093390	MGI:5313099	lncRNA gene	predicted gene 20652
3	gene	88.65190	88.65314	negative	MGI_C57BL6J_2182926	Rxfp4	NCBI_Gene:242093,ENSEMBL:ENSMUSG00000049741	MGI:2182926	protein coding gene	relaxin family peptide receptor 4
3	gene	88.68502	88.68640	negative	MGI_C57BL6J_5663851	Gm43714	ENSEMBL:ENSMUSG00000105512	MGI:5663851	lncRNA gene	predicted gene 43714
3	gene	88.68578	88.71293	positive	MGI_C57BL6J_1921450	Khdc4	NCBI_Gene:74200,ENSEMBL:ENSMUSG00000028060	MGI:1921450	protein coding gene	KH domain containing 4, pre-mRNA splicing factor
3	gene	88.69393	88.69406	positive	MGI_C57BL6J_5455597	Gm25820	ENSEMBL:ENSMUSG00000105288,ENSEMBL:ENSMUSG00000105448	MGI:5455597	snoRNA gene	predicted gene, 25820
3	gene	88.70716	88.70729	positive	MGI_C57BL6J_5455722	Gm25945	ENSEMBL:ENSMUSG00000084433	MGI:5455722	snoRNA gene	predicted gene, 25945
3	gene	88.71684	88.73105	positive	MGI_C57BL6J_108053	Rit1	NCBI_Gene:19769,ENSEMBL:ENSMUSG00000028057	MGI:108053	protein coding gene	Ras-like without CAAX 1
3	gene	88.72209	88.72267	positive	MGI_C57BL6J_4937973	Gm17146	ENSEMBL:ENSMUSG00000091881	MGI:4937973	lncRNA gene	predicted gene 17146
3	gene	88.73875	88.73969	negative	MGI_C57BL6J_3641796	Gm10253	ENSEMBL:ENSMUSG00000104333	MGI:3641796	unclassified gene	predicted gene 10253
3	gene	88.74470	88.77516	negative	MGI_C57BL6J_1859547	Syt11	NCBI_Gene:229521,ENSEMBL:ENSMUSG00000068923	MGI:1859547	protein coding gene	synaptotagmin XI
3	pseudogene	88.77522	88.82937	positive	MGI_C57BL6J_1923272	5830417I10Rik	NCBI_Gene:100302730,ENSEMBL:ENSMUSG00000078684	MGI:1923272	pseudogene	RIKEN cDNA 5830417I10 gene
3	gene	88.78294	88.83255	negative	MGI_C57BL6J_2442808	1500004A13Rik	NCBI_Gene:319830,ENSEMBL:ENSMUSG00000098912	MGI:2442808	lncRNA gene	RIKEN cDNA 1500004A13 gene
3	gene	88.83097	88.91010	positive	MGI_C57BL6J_1917579	Gon4l	NCBI_Gene:76022,ENSEMBL:ENSMUSG00000054199	MGI:1917579	protein coding gene	gon-4-like (C.elegans)
3	gene	88.84503	88.90000	negative	MGI_C57BL6J_5663850	Gm43713	ENSEMBL:ENSMUSG00000106218	MGI:5663850	lncRNA gene	predicted gene 43713
3	gene	88.86292	88.86308	positive	MGI_C57BL6J_5452831	Gm23054	ENSEMBL:ENSMUSG00000064738	MGI:5452831	snRNA gene	predicted gene, 23054
3	gene	88.88092	88.89994	negative	MGI_C57BL6J_5622976	Gm40091	NCBI_Gene:105244494	MGI:5622976	lncRNA gene	predicted gene, 40091
3	gene	88.90511	88.91400	negative	MGI_C57BL6J_2385175	Msto1	NCBI_Gene:229524,ENSEMBL:ENSMUSG00000068922	MGI:2385175	protein coding gene	misato 1, mitochondrial distribution and morphology regulator
3	gene	88.90651	88.90663	positive	MGI_C57BL6J_4422062	n-R5s197	ENSEMBL:ENSMUSG00000065236	MGI:4422062	rRNA gene	nuclear encoded rRNA 5S 197
3	gene	88.92080	88.95120	negative	MGI_C57BL6J_1929538	Dap3	NCBI_Gene:65111,ENSEMBL:ENSMUSG00000068921	MGI:1929538	protein coding gene	death associated protein 3
3	gene	88.95049	89.07937	positive	MGI_C57BL6J_2183158	Ash1l	NCBI_Gene:192195,ENSEMBL:ENSMUSG00000028053	MGI:2183158	protein coding gene	ASH1 like histone lysine methyltransferase
3	gene	88.97062	88.97073	negative	MGI_C57BL6J_5456242	Gm26465	ENSEMBL:ENSMUSG00000095712	MGI:5456242	snRNA gene	predicted gene, 26465
3	gene	89.04900	89.04913	negative	MGI_C57BL6J_5454180	Gm24403	ENSEMBL:ENSMUSG00000077804	MGI:5454180	snoRNA gene	predicted gene, 24403
3	gene	89.08194	89.10110	negative	MGI_C57BL6J_5663875	Gm43738	ENSEMBL:ENSMUSG00000105204	MGI:5663875	protein coding gene	predicted gene 43738
3	gene	89.08397	89.09336	negative	MGI_C57BL6J_1919546	Rusc1	NCBI_Gene:72296,ENSEMBL:ENSMUSG00000041263	MGI:1919546	protein coding gene	RUN and SH3 domain containing 1
3	gene	89.09359	89.10197	negative	MGI_C57BL6J_104888	Fdps	NCBI_Gene:110196,ENSEMBL:ENSMUSG00000059743	MGI:104888	protein coding gene	farnesyl diphosphate synthetase
3	gene	89.09791	89.09801	negative	MGI_C57BL6J_5452712	Gm22935	ENSEMBL:ENSMUSG00000077148	MGI:5452712	snRNA gene	predicted gene, 22935
3	pseudogene	89.11669	89.11702	positive	MGI_C57BL6J_5588863	Gm29704	NCBI_Gene:101055641,ENSEMBL:ENSMUSG00000105654	MGI:5588863	pseudogene	predicted gene, 29704
3	gene	89.13613	89.14678	positive	MGI_C57BL6J_97604	Pklr	NCBI_Gene:18770,ENSEMBL:ENSMUSG00000041237	MGI:97604	protein coding gene	pyruvate kinase liver and red blood cell
3	gene	89.14607	89.16023	negative	MGI_C57BL6J_1298211	Hcn3	NCBI_Gene:15168,ENSEMBL:ENSMUSG00000028051	MGI:1298211	protein coding gene	hyperpolarization-activated, cyclic nucleotide-gated K+ 3
3	gene	89.16479	89.17709	positive	MGI_C57BL6J_1098669	Clk2	NCBI_Gene:12748,ENSEMBL:ENSMUSG00000068917	MGI:1098669	protein coding gene	CDC-like kinase 2
3	gene	89.16479	89.18277	positive	MGI_C57BL6J_5825564	Gm45927	NCBI_Gene:105943584	MGI:5825564	protein coding gene	predicted gene, 45927
3	gene	89.17739	89.18277	positive	MGI_C57BL6J_1346346	Scamp3	NCBI_Gene:24045,ENSEMBL:ENSMUSG00000028049	MGI:1346346	protein coding gene	secretory carrier membrane protein 3
3	gene	89.18076	89.18410	negative	MGI_C57BL6J_3801823	Gm16069	NCBI_Gene:102636781,ENSEMBL:ENSMUSG00000086718	MGI:3801823	lncRNA gene	predicted gene 16069
3	gene	89.18314	89.18930	positive	MGI_C57BL6J_1915771	Fam189b	NCBI_Gene:68521,ENSEMBL:ENSMUSG00000032657	MGI:1915771	protein coding gene	family with sequence similarity 189, member B
3	gene	89.20117	89.20127	negative	MGI_C57BL6J_5453046	Gm23269	ENSEMBL:ENSMUSG00000094489	MGI:5453046	snRNA gene	predicted gene, 23269
3	gene	89.20291	89.20897	positive	MGI_C57BL6J_95665	Gba	NCBI_Gene:14466,ENSEMBL:ENSMUSG00000028048	MGI:95665	protein coding gene	glucosidase, beta, acid
3	gene	89.20908	89.22709	negative	MGI_C57BL6J_103025	Mtx1	NCBI_Gene:17827,ENSEMBL:ENSMUSG00000064068	MGI:103025	protein coding gene	metaxin 1
3	gene	89.21043	89.21316	positive	MGI_C57BL6J_5663874	Gm43737	ENSEMBL:ENSMUSG00000105692	MGI:5663874	unclassified gene	predicted gene 43737
3	gene	89.21481	89.22684	positive	MGI_C57BL6J_98739	Thbs3	NCBI_Gene:21827,ENSEMBL:ENSMUSG00000028047	MGI:98739	protein coding gene	thrombospondin 3
3	gene	89.22712	89.22720	negative	MGI_C57BL6J_3718577	Mir92b	miRBase:MI0005521,NCBI_Gene:100124470,ENSEMBL:ENSMUSG00000076255	MGI:3718577	miRNA gene	microRNA 92b
3	gene	89.22906	89.23338	positive	MGI_C57BL6J_97231	Muc1	NCBI_Gene:17829,ENSEMBL:ENSMUSG00000042784	MGI:97231	protein coding gene	mucin 1, transmembrane
3	gene	89.23417	89.24631	negative	MGI_C57BL6J_2673000	Trim46	NCBI_Gene:360213,ENSEMBL:ENSMUSG00000042766	MGI:2673000	protein coding gene	tripartite motif-containing 46
3	gene	89.24597	89.24991	positive	MGI_C57BL6J_1913309	Krtcap2	NCBI_Gene:66059,ENSEMBL:ENSMUSG00000042747	MGI:1913309	protein coding gene	keratinocyte associated protein 2
3	gene	89.25926	89.26708	positive	MGI_C57BL6J_1915813	Dpm3	NCBI_Gene:68563,ENSEMBL:ENSMUSG00000042737	MGI:1915813	protein coding gene	dolichyl-phosphate mannosyltransferase polypeptide 3
3	gene	89.26825	89.27057	negative	MGI_C57BL6J_107417	Slc50a1	NCBI_Gene:19729,ENSEMBL:ENSMUSG00000027953	MGI:107417	protein coding gene	solute carrier family 50 (sugar transporter), member 1
3	gene	89.27173	89.28114	negative	MGI_C57BL6J_103236	Efna1	NCBI_Gene:13636,ENSEMBL:ENSMUSG00000027954	MGI:103236	protein coding gene	ephrin A1
3	gene	89.29054	89.30290	negative	MGI_C57BL6J_5593004	Gm33845	NCBI_Gene:102636898	MGI:5593004	lncRNA gene	predicted gene, 33845
3	gene	89.30248	89.30273	positive	MGI_C57BL6J_5452419	Gm22642	ENSEMBL:ENSMUSG00000093093	MGI:5452419	unclassified non-coding RNA gene	predicted gene, 22642
3	gene	89.30324	89.31422	positive	MGI_C57BL6J_5593173	Gm34014	NCBI_Gene:102637122	MGI:5593173	lncRNA gene	predicted gene, 34014
3	gene	89.31390	89.32296	negative	MGI_C57BL6J_106644	Efna3	NCBI_Gene:13638,ENSEMBL:ENSMUSG00000028039	MGI:106644	protein coding gene	ephrin A3
3	gene	89.31544	89.31891	positive	MGI_C57BL6J_3802094	Gm15998	ENSEMBL:ENSMUSG00000086389	MGI:3802094	lncRNA gene	predicted gene 15998
3	gene	89.32590	89.33117	negative	MGI_C57BL6J_5593277	Gm34118	NCBI_Gene:102637253	MGI:5593277	lncRNA gene	predicted gene, 34118
3	gene	89.33339	89.33803	negative	MGI_C57BL6J_106643	Efna4	NCBI_Gene:13639,ENSEMBL:ENSMUSG00000028040	MGI:106643	protein coding gene	ephrin A4
3	gene	89.33785	89.34783	positive	MGI_C57BL6J_3704222	4731419I09Rik	ENSEMBL:ENSMUSG00000097004	MGI:3704222	lncRNA gene	RIKEN cDNA 4731419I09 gene
3	gene	89.33854	89.35003	negative	MGI_C57BL6J_1333882	Adam15	NCBI_Gene:11490,ENSEMBL:ENSMUSG00000028041	MGI:1333882	protein coding gene	a disintegrin and metallopeptidase domain 15 (metargidin)
3	gene	89.35022	89.36525	negative	MGI_C57BL6J_1925022	Dcst1	NCBI_Gene:77772,ENSEMBL:ENSMUSG00000042672	MGI:1925022	protein coding gene	DC-STAMP domain containing 1
3	gene	89.35042	89.37764	positive	MGI_C57BL6J_2685606	Dcst2	NCBI_Gene:329702,ENSEMBL:ENSMUSG00000109293	MGI:2685606	protein coding gene	DC-STAMP domain containing 2
3	pseudogene	89.35363	89.35490	positive	MGI_C57BL6J_3708679	Gm10702	ENSEMBL:ENSMUSG00000074467	MGI:3708679	pseudogene	predicted gene 10702
3	gene	89.37764	89.39481	negative	MGI_C57BL6J_102755	Zbtb7b	NCBI_Gene:22724,ENSEMBL:ENSMUSG00000028042	MGI:102755	protein coding gene	zinc finger and BTB domain containing 7B
3	gene	89.39185	89.39878	positive	MGI_C57BL6J_3642531	Gm15417	NCBI_Gene:545539,ENSEMBL:ENSMUSG00000074466	MGI:3642531	lncRNA gene	predicted gene 15417
3	gene	89.40099	89.40279	negative	MGI_C57BL6J_1930020	Lenep	NCBI_Gene:57275,ENSEMBL:ENSMUSG00000078173	MGI:1930020	protein coding gene	lens epithelial protein
3	gene	89.40100	89.41187	negative	MGI_C57BL6J_2443030	Flad1	NCBI_Gene:319945,ENSEMBL:ENSMUSG00000042642	MGI:2443030	protein coding gene	flavin adenine dinucleotide synthetase 1
3	gene	89.41547	89.41838	negative	MGI_C57BL6J_1889208	Cks1b	NCBI_Gene:54124,ENSEMBL:ENSMUSG00000028044	MGI:1889208	protein coding gene	CDC28 protein kinase 1b
3	gene	89.41840	89.43003	positive	MGI_C57BL6J_98296	Shc1	NCBI_Gene:20416,ENSEMBL:ENSMUSG00000042626	MGI:98296	protein coding gene	src homology 2 domain-containing transforming protein C1
3	gene	89.43012	89.43513	positive	MGI_C57BL6J_1916161	Pygo2	NCBI_Gene:68911,ENSEMBL:ENSMUSG00000047824	MGI:1916161	protein coding gene	pygopus 2
3	gene	89.43667	89.45095	positive	MGI_C57BL6J_2441670	Pbxip1	NCBI_Gene:229534,ENSEMBL:ENSMUSG00000042613	MGI:2441670	protein coding gene	pre B cell leukemia transcription factor interacting protein 1
3	gene	89.45077	89.45094	positive	MGI_C57BL6J_1916805	2310033F14Rik	NA	NA	unclassified gene	RIKEN cDNA 2310033F14 gene
3	gene	89.45454	89.46901	positive	MGI_C57BL6J_1915853	Pmvk	NCBI_Gene:68603,ENSEMBL:ENSMUSG00000027952	MGI:1915853	protein coding gene	phosphomevalonate kinase
3	gene	89.52016	89.67513	positive	MGI_C57BL6J_2153183	Kcnn3	NCBI_Gene:140493,ENSEMBL:ENSMUSG00000000794	MGI:2153183	protein coding gene	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
3	gene	89.71502	89.75346	positive	MGI_C57BL6J_1889575	Adar	NCBI_Gene:56417,ENSEMBL:ENSMUSG00000027951	MGI:1889575	protein coding gene	adenosine deaminase, RNA-specific
3	gene	89.74620	89.76463	negative	MGI_C57BL6J_87891	Chrnb2	NCBI_Gene:11444,ENSEMBL:ENSMUSG00000027950	MGI:87891	protein coding gene	cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)
3	gene	89.76751	89.77340	negative	MGI_C57BL6J_1921284	4632404H12Rik	NCBI_Gene:74034,ENSEMBL:ENSMUSG00000042579	MGI:1921284	lncRNA gene	RIKEN cDNA 4632404H12 gene
3	gene	89.77361	89.78400	positive	MGI_C57BL6J_1917343	Ube2q1	NCBI_Gene:70093,ENSEMBL:ENSMUSG00000042572	MGI:1917343	protein coding gene	ubiquitin-conjugating enzyme E2Q family member 1
3	pseudogene	89.81948	89.82168	positive	MGI_C57BL6J_3645290	Gm8969	NCBI_Gene:668087,ENSEMBL:ENSMUSG00000106564	MGI:3645290	pseudogene	predicted gene 8969
3	gene	89.83137	89.85885	positive	MGI_C57BL6J_1099462	She	NCBI_Gene:214547,ENSEMBL:ENSMUSG00000046280	MGI:1099462	protein coding gene	src homology 2 domain-containing transforming protein E
3	gene	89.86406	89.91320	negative	MGI_C57BL6J_105304	Il6ra	NCBI_Gene:16194,ENSEMBL:ENSMUSG00000027947	MGI:105304	protein coding gene	interleukin 6 receptor, alpha
3	gene	89.87208	89.89024	positive	MGI_C57BL6J_5826448	Gm46811	NCBI_Gene:108168879	MGI:5826448	lncRNA gene	predicted gene, 46811
3	gene	89.91292	89.91405	positive	MGI_C57BL6J_5662946	Gm42809	ENSEMBL:ENSMUSG00000105941	MGI:5662946	lncRNA gene	predicted gene 42809
3	gene	89.93948	89.96351	negative	MGI_C57BL6J_1859660	Atp8b2	NCBI_Gene:54667,ENSEMBL:ENSMUSG00000060671	MGI:1859660	protein coding gene	ATPase, class I, type 8B, member 2
3	pseudogene	89.96344	89.96973	negative	MGI_C57BL6J_4356425	Aqp10-ps	NCBI_Gene:435743,ENSEMBL:ENSMUSG00000105082	MGI:4356425	pseudogene	aquaporin 10, pseudogene
3	gene	89.96800	89.96816	negative	MGI_C57BL6J_5453823	Gm24046	ENSEMBL:ENSMUSG00000065045	MGI:5453823	snRNA gene	predicted gene, 24046
3	gene	89.99545	89.99878	negative	MGI_C57BL6J_1346319	Hax1	NCBI_Gene:23897,ENSEMBL:ENSMUSG00000027944	MGI:1346319	protein coding gene	HCLS1 associated X-1
3	gene	89.99876	90.02144	positive	MGI_C57BL6J_5011895	Gm19710	NCBI_Gene:100503469,ENSEMBL:ENSMUSG00000105552	MGI:5011895	lncRNA gene	predicted gene, 19710
3	gene	89.99959	90.05263	negative	MGI_C57BL6J_1921633	Ubap2l	NCBI_Gene:74383,ENSEMBL:ENSMUSG00000042520	MGI:1921633	protein coding gene	ubiquitin-associated protein 2-like
3	gene	90.01059	90.01073	negative	MGI_C57BL6J_5454385	Gm24608	ENSEMBL:ENSMUSG00000077569	MGI:5454385	snoRNA gene	predicted gene, 24608
3	gene	90.01115	90.01121	negative	MGI_C57BL6J_5531378	Mir7669	miRBase:MI0025009,NCBI_Gene:102465771,ENSEMBL:ENSMUSG00000098397	MGI:5531378	miRNA gene	microRNA 7669
3	gene	90.05164	90.06835	positive	MGI_C57BL6J_1914027	4933434E20Rik	NCBI_Gene:99650,ENSEMBL:ENSMUSG00000027942	MGI:1914027	protein coding gene	RIKEN cDNA 4933434E20 gene
3	gene	90.05726	90.05838	positive	MGI_C57BL6J_4414960	Gm16540	ENSEMBL:ENSMUSG00000090005	MGI:4414960	lncRNA gene	predicted gene 16540
3	gene	90.06280	90.06835	positive	MGI_C57BL6J_1920795	1700094D03Rik	NCBI_Gene:73545	MGI:1920795	protein coding gene	RIKEN cDNA 1700094D03 gene
3	gene	90.07002	90.07010	positive	MGI_C57BL6J_3718457	Mir190b	miRBase:MI0005478,NCBI_Gene:100124481,ENSEMBL:ENSMUSG00000077996	MGI:3718457	miRNA gene	microRNA 190b
3	gene	90.07265	90.10090	positive	MGI_C57BL6J_1890149	Tpm3	NCBI_Gene:59069,ENSEMBL:ENSMUSG00000027940	MGI:1890149	protein coding gene	tropomyosin 3, gamma
3	gene	90.10157	90.21215	positive	MGI_C57BL6J_1924845	Nup210l	NCBI_Gene:77595,ENSEMBL:ENSMUSG00000027939	MGI:1924845	protein coding gene	nucleoporin 210-like
3	gene	90.12465	90.12712	positive	MGI_C57BL6J_5594024	Gm34865	NCBI_Gene:102638261	MGI:5594024	lncRNA gene	predicted gene, 34865
3	gene	90.12654	90.12667	positive	MGI_C57BL6J_5453500	Gm23723	ENSEMBL:ENSMUSG00000064930	MGI:5453500	snoRNA gene	predicted gene, 23723
3	pseudogene	90.12677	90.12706	positive	MGI_C57BL6J_5663849	Gm43712	ENSEMBL:ENSMUSG00000104649	MGI:5663849	pseudogene	predicted gene 43712
3	gene	90.19868	90.19879	positive	MGI_C57BL6J_5453962	Gm24185	ENSEMBL:ENSMUSG00000084527	MGI:5453962	snRNA gene	predicted gene, 24185
3	gene	90.21252	90.21365	negative	MGI_C57BL6J_1888676	Rps27	NCBI_Gene:57294,ENSEMBL:ENSMUSG00000090733	MGI:1888676	protein coding gene	ribosomal protein S27
3	gene	90.21370	90.22639	positive	MGI_C57BL6J_1927232	Rab13	NCBI_Gene:68328,ENSEMBL:ENSMUSG00000027935	MGI:1927232	protein coding gene	RAB13, member RAS oncogene family
3	gene	90.23160	90.23584	positive	MGI_C57BL6J_1346082	Jtb	NCBI_Gene:23922,ENSEMBL:ENSMUSG00000027937	MGI:1346082	protein coding gene	jumping translocation breakpoint
3	gene	90.23750	90.24445	negative	MGI_C57BL6J_1916603	Creb3l4	NCBI_Gene:78284,ENSEMBL:ENSMUSG00000027938	MGI:1916603	protein coding gene	cAMP responsive element binding protein 3-like 4
3	gene	90.24817	90.25361	positive	MGI_C57BL6J_1353474	Slc39a1	NCBI_Gene:30791,ENSEMBL:ENSMUSG00000052310	MGI:1353474	protein coding gene	solute carrier family 39 (zinc transporter), member 1
3	gene	90.25386	90.26413	positive	MGI_C57BL6J_1921593	Crtc2	NCBI_Gene:74343,ENSEMBL:ENSMUSG00000027936	MGI:1921593	protein coding gene	CREB regulated transcription coactivator 2
3	gene	90.26492	90.28067	positive	MGI_C57BL6J_2446201	Dennd4b	NCBI_Gene:229541,ENSEMBL:ENSMUSG00000042404	MGI:2446201	protein coding gene	DENN/MADD domain containing 4B
3	gene	90.27015	90.27021	positive	MGI_C57BL6J_5530752	Mir7012	miRBase:MI0022861,NCBI_Gene:102465612,ENSEMBL:ENSMUSG00000099199	MGI:5530752	miRNA gene	microRNA 7012
3	gene	90.28999	90.29073	positive	MGI_C57BL6J_1918721	8430422J01Rik	NA	NA	unclassified gene	RIKEN cDNA 8430422J01 gene
3	gene	90.29230	90.29398	negative	MGI_C57BL6J_1923075	4930537H20Rik	ENSEMBL:ENSMUSG00000105350	MGI:1923075	lncRNA gene	RIKEN cDNA 4930537H20 gene
3	gene	90.29318	90.36341	positive	MGI_C57BL6J_2443225	Gatad2b	NCBI_Gene:229542,ENSEMBL:ENSMUSG00000042390	MGI:2443225	protein coding gene	GATA zinc finger domain containing 2B
3	gene	90.31152	90.31701	positive	MGI_C57BL6J_5791313	Gm45477	ENSEMBL:ENSMUSG00000108394	MGI:5791313	unclassified gene	predicted gene 45477
3	gene	90.33540	90.33795	positive	MGI_C57BL6J_5791190	Gm45354	ENSEMBL:ENSMUSG00000108689	MGI:5791190	unclassified gene	predicted gene 45354
3	gene	90.38523	90.39005	negative	MGI_C57BL6J_1347358	Slc27a3	NCBI_Gene:26568,ENSEMBL:ENSMUSG00000027932	MGI:1347358	protein coding gene	solute carrier family 27 (fatty acid transporter), member 3
3	gene	90.39138	90.43364	negative	MGI_C57BL6J_2140050	Ints3	NCBI_Gene:229543,ENSEMBL:ENSMUSG00000027933	MGI:2140050	protein coding gene	integrator complex subunit 3
3	gene	90.45059	90.46593	negative	MGI_C57BL6J_97371	Npr1	NCBI_Gene:18160,ENSEMBL:ENSMUSG00000027931	MGI:97371	protein coding gene	natriuretic peptide receptor 1
3	gene	90.45158	90.45709	positive	MGI_C57BL6J_3801855	Gm16048	ENSEMBL:ENSMUSG00000087411	MGI:3801855	lncRNA gene	predicted gene 16048
3	pseudogene	90.46890	90.47096	negative	MGI_C57BL6J_5663732	Gm43595	ENSEMBL:ENSMUSG00000105746	MGI:5663732	pseudogene	predicted gene 43595
3	gene	90.47586	90.47593	negative	MGI_C57BL6J_4413988	n-TMcat11	NCBI_Gene:102467358	MGI:4413988	tRNA gene	nuclear encoded tRNA methionine 11 (anticodon CAT)
3	gene	90.47613	90.48838	positive	MGI_C57BL6J_1915031	Ilf2	NCBI_Gene:67781,ENSEMBL:ENSMUSG00000001016	MGI:1915031	protein coding gene	interleukin enhancer binding factor 2
3	gene	90.48803	90.49103	negative	MGI_C57BL6J_1333745	Snapin	NCBI_Gene:20615,ENSEMBL:ENSMUSG00000001018	MGI:1333745	protein coding gene	SNAP-associated protein
3	gene	90.49854	90.50954	negative	MGI_C57BL6J_1913761	Chtop	NCBI_Gene:66511,ENSEMBL:ENSMUSG00000001017	MGI:1913761	protein coding gene	chromatin target of PRMT1
3	gene	90.51103	90.51439	negative	MGI_C57BL6J_1338917	S100a1	NCBI_Gene:20193,ENSEMBL:ENSMUSG00000044080	MGI:1338917	protein coding gene	S100 calcium binding protein A1
3	gene	90.51444	90.52458	positive	MGI_C57BL6J_109581	S100a13	NCBI_Gene:20196,ENSEMBL:ENSMUSG00000042312	MGI:109581	protein coding gene	S100 calcium binding protein A13
3	gene	90.52685	90.52884	positive	MGI_C57BL6J_1913416	S100a14	NCBI_Gene:66166,ENSEMBL:ENSMUSG00000042306	MGI:1913416	protein coding gene	S100 calcium binding protein A14
3	gene	90.53725	90.54315	positive	MGI_C57BL6J_1915110	S100a16	NCBI_Gene:67860,ENSEMBL:ENSMUSG00000074457	MGI:1915110	protein coding gene	S100 calcium binding protein A16
3	gene	90.54862	90.54872	positive	MGI_C57BL6J_5454370	Gm24593	ENSEMBL:ENSMUSG00000084456	MGI:5454370	snRNA gene	predicted gene, 24593
3	gene	90.56036	90.60271	positive	MGI_C57BL6J_1338849	S100a3	NCBI_Gene:20197,ENSEMBL:ENSMUSG00000001021	MGI:1338849	protein coding gene	S100 calcium binding protein A3
3	gene	90.56036	90.59153	positive	MGI_C57BL6J_3510999	S100a2	NCBI_Gene:628324,ENSEMBL:ENSMUSG00000094018	MGI:3510999	protein coding gene	S100 calcium binding protein A2
3	gene	90.56056	90.56070	negative	MGI_C57BL6J_5453241	Gm23464	ENSEMBL:ENSMUSG00000065079	MGI:5453241	snRNA gene	predicted gene, 23464
3	gene	90.60190	90.60589	positive	MGI_C57BL6J_5662811	Gm42674	ENSEMBL:ENSMUSG00000105518	MGI:5662811	protein coding gene	predicted gene 42674
3	gene	90.60377	90.60604	positive	MGI_C57BL6J_1330282	S100a4	NCBI_Gene:20198,ENSEMBL:ENSMUSG00000001020	MGI:1330282	protein coding gene	S100 calcium binding protein A4
3	gene	90.60648	90.61178	positive	MGI_C57BL6J_1338915	S100a5	NCBI_Gene:20199,ENSEMBL:ENSMUSG00000001023	MGI:1338915	protein coding gene	S100 calcium binding protein A5
3	gene	90.61288	90.62418	positive	MGI_C57BL6J_1339467	S100a6	NCBI_Gene:20200,ENSEMBL:ENSMUSG00000001025	MGI:1339467	protein coding gene	S100 calcium binding protein A6 (calcyclin)
3	pseudogene	90.65165	90.65187	negative	MGI_C57BL6J_5011924	Gm19739	NCBI_Gene:102638335,ENSEMBL:ENSMUSG00000105644	MGI:5011924	pseudogene	predicted gene, 19739
3	gene	90.65183	90.65867	positive	MGI_C57BL6J_2687194	S100a7a	NCBI_Gene:381493,ENSEMBL:ENSMUSG00000063767	MGI:2687194	protein coding gene	S100 calcium binding protein A7A
3	gene	90.66898	90.67003	positive	MGI_C57BL6J_88244	S100a8	NCBI_Gene:20201,ENSEMBL:ENSMUSG00000056054	MGI:88244	protein coding gene	S100 calcium binding protein A8 (calgranulin A)
3	gene	90.69263	90.69572	negative	MGI_C57BL6J_1338947	S100a9	NCBI_Gene:20202,ENSEMBL:ENSMUSG00000056071	MGI:1338947	protein coding gene	S100 calcium binding protein A9 (calgranulin B)
3	pseudogene	90.70884	90.70961	negative	MGI_C57BL6J_5662716	Gm42579	NCBI_Gene:108168854,ENSEMBL:ENSMUSG00000105819	MGI:5662716	pseudogene	predicted gene 42579
3	pseudogene	90.72257	90.72351	negative	MGI_C57BL6J_3646209	Gm5284	NCBI_Gene:383949,ENSEMBL:ENSMUSG00000106117	MGI:3646209	pseudogene	predicted gene 5284
3	gene	90.72691	90.74152	positive	MGI_C57BL6J_2686324	Pglyrp4	NCBI_Gene:384997,ENSEMBL:ENSMUSG00000042250	MGI:2686324	protein coding gene	peptidoglycan recognition protein 4
3	pseudogene	90.75873	90.75956	positive	MGI_C57BL6J_5594172	Gm35013	ENSEMBL:ENSMUSG00000105892	MGI:5594172	pseudogene	predicted gene, 35013
3	pseudogene	90.75937	90.76131	positive	MGI_C57BL6J_3645549	Gm5104	NCBI_Gene:329706	MGI:3645549	pseudogene	predicted gene 5104
3	gene	90.77582	90.77788	negative	MGI_C57BL6J_3645655	Gm5849	ENSEMBL:ENSMUSG00000096621	MGI:3645655	protein coding gene	predicted gene 5849
3	pseudogene	90.84637	90.84825	negative	MGI_C57BL6J_5663372	Gm43235	ENSEMBL:ENSMUSG00000106174	MGI:5663372	pseudogene	predicted gene 43235
3	pseudogene	91.00976	91.01718	negative	MGI_C57BL6J_3643784	Gm9023	NCBI_Gene:668179,ENSEMBL:ENSMUSG00000106257	MGI:3643784	pseudogene	predicted gene 9023
3	pseudogene	91.03957	91.03987	positive	MGI_C57BL6J_3779688	Gm7166	ENSEMBL:ENSMUSG00000105919	MGI:3779688	pseudogene	predicted gene 7166
3	pseudogene	91.07166	91.07519	positive	MGI_C57BL6J_1922392	4930529C04Rik	NCBI_Gene:619677,ENSEMBL:ENSMUSG00000086377	MGI:1922392	pseudogene	RIKEN cDNA 4930529C04 gene
3	gene	91.08814	91.10743	negative	MGI_C57BL6J_2684973	S100a7l2	NCBI_Gene:229550,ENSEMBL:ENSMUSG00000091175	MGI:2684973	protein coding gene	S100 calcium binding protein A7 like 2
3	gene	91.62856	91.63070	negative	MGI_C57BL6J_5595482	Gm36323	NCBI_Gene:102640196	MGI:5595482	protein coding gene	predicted gene, 36323
3	gene	91.73835	91.74049	negative	MGI_C57BL6J_5594344	Gm35185	NCBI_Gene:102638680	MGI:5594344	protein coding gene	predicted gene, 35185
3	pseudogene	91.91438	91.91653	positive	MGI_C57BL6J_5826474	Gm46837	NCBI_Gene:108168919	MGI:5826474	pseudogene	predicted gene, 46837
3	pseudogene	91.99611	91.99725	positive	MGI_C57BL6J_5009818	Gm17742	NCBI_Gene:383887	MGI:5009818	pseudogene	predicted gene, 17742
3	gene	92.01076	92.01086	negative	MGI_C57BL6J_5453474	Gm23697	ENSEMBL:ENSMUSG00000077085	MGI:5453474	miRNA gene	predicted gene, 23697
3	gene	92.01248	92.03267	positive	MGI_C57BL6J_2685266	Pglyrp3	NCBI_Gene:242100,ENSEMBL:ENSMUSG00000042244	MGI:2685266	protein coding gene	peptidoglycan recognition protein 3
3	pseudogene	92.02449	92.02503	positive	MGI_C57BL6J_103164	Mif-ps3	NCBI_Gene:619750,ENSEMBL:ENSMUSG00000082826	MGI:103164	pseudogene	macrophage migration inhibitory factor, pseudogene 3
3	gene	92.06140	92.06151	negative	MGI_C57BL6J_5454922	Gm25145	ENSEMBL:ENSMUSG00000096133	MGI:5454922	miRNA gene	predicted gene, 25145
3	gene	92.08027	92.08314	negative	MGI_C57BL6J_96816	Lor	NCBI_Gene:16939,ENSEMBL:ENSMUSG00000043165	MGI:96816	protein coding gene	loricrin
3	gene	92.09735	92.09963	positive	MGI_C57BL6J_5663873	Gm43736	ENSEMBL:ENSMUSG00000104981	MGI:5663873	lncRNA gene	predicted gene 43736
3	gene	92.10258	92.14274	negative	MGI_C57BL6J_1922313	4930511M18Rik	ENSEMBL:ENSMUSG00000104791	MGI:1922313	lncRNA gene	RIKEN cDNA 4930511M18 gene
3	gene	92.11319	92.11932	positive	MGI_C57BL6J_5663872	Gm43735	ENSEMBL:ENSMUSG00000106143	MGI:5663872	lncRNA gene	predicted gene 43735
3	gene	92.12220	92.12395	negative	MGI_C57BL6J_1925680	Prr9	NCBI_Gene:109314,ENSEMBL:ENSMUSG00000056270	MGI:1925680	protein coding gene	proline rich 9
3	gene	92.13499	92.14275	negative	MGI_C57BL6J_1916582	Lelp1	NCBI_Gene:69332,ENSEMBL:ENSMUSG00000027927	MGI:1916582	protein coding gene	late cornified envelope-like proline-rich 1
3	gene	92.17019	92.18323	positive	MGI_C57BL6J_5594598	Gm35439	NCBI_Gene:102639022,ENSEMBL:ENSMUSG00000105476	MGI:5594598	lncRNA gene	predicted gene, 35439
3	gene	92.21580	92.22249	positive	MGI_C57BL6J_1330350	Sprr2a1	NCBI_Gene:20755,ENSEMBL:ENSMUSG00000078664	MGI:1330350	protein coding gene	small proline-rich protein 2A1
3	gene	92.21592	92.25730	positive	MGI_C57BL6J_3845026	Sprr2a2	NCBI_Gene:100303744,ENSEMBL:ENSMUSG00000068893	MGI:3845026	protein coding gene	small proline-rich protein 2A2
3	pseudogene	92.22741	92.22870	negative	MGI_C57BL6J_3645657	Gm5850	NCBI_Gene:545543,ENSEMBL:ENSMUSG00000103286	MGI:3645657	pseudogene	predicted gene 5850
3	gene	92.24293	92.24624	negative	MGI_C57BL6J_5610315	Gm37087	ENSEMBL:ENSMUSG00000103187	MGI:5610315	unclassified gene	predicted gene, 37087
3	pseudogene	92.26222	92.26350	negative	MGI_C57BL6J_3645652	Gm5851	NCBI_Gene:545545,ENSEMBL:ENSMUSG00000104028	MGI:3645652	pseudogene	predicted gene 5851
3	gene	92.27773	92.28103	negative	MGI_C57BL6J_5610980	Gm37752	ENSEMBL:ENSMUSG00000103385	MGI:5610980	unclassified gene	predicted gene, 37752
3	gene	92.28530	92.29140	positive	MGI_C57BL6J_3845028	Sprr2a3	NCBI_Gene:100042514,ENSEMBL:ENSMUSG00000074445	MGI:3845028	protein coding gene	small proline-rich protein 2A3
3	gene	92.31662	92.31808	positive	MGI_C57BL6J_1330352	Sprr2b	NCBI_Gene:20756,ENSEMBL:ENSMUSG00000050092	MGI:1330352	protein coding gene	small proline-rich protein 2B
3	pseudogene	92.32091	92.32105	positive	MGI_C57BL6J_5610656	Gm37428	ENSEMBL:ENSMUSG00000103518	MGI:5610656	pseudogene	predicted gene, 37428
3	pseudogene	92.32660	92.32690	positive	MGI_C57BL6J_1330351	Sprr2c-ps	NCBI_Gene:20757,ENSEMBL:ENSMUSG00000103221	MGI:1330351	pseudogene	small proline-rich protein 2C, pseudogene
3	gene	92.33914	92.34087	positive	MGI_C57BL6J_1330347	Sprr2d	NCBI_Gene:20758,ENSEMBL:ENSMUSG00000042212	MGI:1330347	protein coding gene	small proline-rich protein 2D
3	gene	92.35214	92.35345	positive	MGI_C57BL6J_1330346	Sprr2e	NCBI_Gene:20759,ENSEMBL:ENSMUSG00000055030	MGI:1330346	protein coding gene	small proline-rich protein 2E
3	gene	92.36519	92.36644	positive	MGI_C57BL6J_1330349	Sprr2f	NCBI_Gene:20760,ENSEMBL:ENSMUSG00000050635	MGI:1330349	protein coding gene	small proline-rich protein 2F
3	pseudogene	92.37391	92.37523	positive	MGI_C57BL6J_1330348	Sprr2g	NCBI_Gene:20761,ENSEMBL:ENSMUSG00000046203	MGI:1330348	polymorphic pseudogene	small proline-rich protein 2G
3	gene	92.38568	92.38732	positive	MGI_C57BL6J_1330343	Sprr2h	NCBI_Gene:20762,ENSEMBL:ENSMUSG00000046259	MGI:1330343	protein coding gene	small proline-rich protein 2H
3	gene	92.40799	92.40927	positive	MGI_C57BL6J_1330309	Sprr2i	NCBI_Gene:20763,ENSEMBL:ENSMUSG00000042157	MGI:1330309	protein coding gene	small proline-rich protein 2I
3	pseudogene	92.41808	92.41940	positive	MGI_C57BL6J_1330345	Sprr2j-ps	NCBI_Gene:20764,ENSEMBL:ENSMUSG00000027925	MGI:1330345	pseudogene	small proline-rich protein 2J, pseudogene
3	gene	92.42803	92.42942	negative	MGI_C57BL6J_3642386	Gm9774	NCBI_Gene:100043022,ENSEMBL:ENSMUSG00000042165	MGI:3642386	protein coding gene	predicted pseudogene 9774
3	gene	92.43258	92.43393	positive	MGI_C57BL6J_1330344	Sprr2k	NCBI_Gene:20765,ENSEMBL:ENSMUSG00000054215	MGI:1330344	protein coding gene	small proline-rich protein 2K
3	gene	92.43681	92.43882	negative	MGI_C57BL6J_106659	Sprr1b	NCBI_Gene:20754,ENSEMBL:ENSMUSG00000048455	MGI:106659	protein coding gene	small proline-rich protein 1B
3	gene	92.45650	92.45872	negative	MGI_C57BL6J_1330237	Sprr3	NCBI_Gene:20766,ENSEMBL:ENSMUSG00000045539	MGI:1330237	protein coding gene	small proline-rich protein 3
3	pseudogene	92.47324	92.47354	negative	MGI_C57BL6J_5610605	Gm37377	ENSEMBL:ENSMUSG00000102345	MGI:5610605	pseudogene	predicted gene, 37377
3	gene	92.48395	92.48589	negative	MGI_C57BL6J_106660	Sprr1a	NCBI_Gene:20753,ENSEMBL:ENSMUSG00000050359	MGI:106660	protein coding gene	small proline-rich protein 1A
3	gene	92.50026	92.50049	negative	MGI_C57BL6J_2654508	Sprr4	NCBI_Gene:229562,ENSEMBL:ENSMUSG00000045566	MGI:2654508	protein coding gene	small proline-rich protein 4
3	gene	92.53251	92.53451	negative	MGI_C57BL6J_1924218	2310046K23Rik	ENSEMBL:ENSMUSG00000102308	MGI:1924218	protein coding gene	RIKEN cDNA 2310046K23 gene
3	gene	92.57090	92.57379	negative	MGI_C57BL6J_96626	Ivl	NCBI_Gene:16447,ENSEMBL:ENSMUSG00000049128	MGI:96626	protein coding gene	involucrin
3	gene	92.57387	92.62033	positive	MGI_C57BL6J_5594798	Gm35639	NCBI_Gene:102639293	MGI:5594798	lncRNA gene	predicted gene, 35639
3	gene	92.58387	92.58902	negative	MGI_C57BL6J_96945	Smcp	NCBI_Gene:17235,ENSEMBL:ENSMUSG00000074435	MGI:96945	protein coding gene	sperm mitochondria-associated cysteine-rich protein
3	gene	92.60472	92.60749	negative	MGI_C57BL6J_3588251	2210017I01Rik	ENSEMBL:ENSMUSG00000103523	MGI:3588251	protein coding gene	RIKEN cDNA 2210017I01 gene
3	gene	92.60476	92.62166	negative	MGI_C57BL6J_1925632	Lce6a	NCBI_Gene:78382,ENSEMBL:ENSMUSG00000086848	MGI:1925632	protein coding gene	late cornified envelope 6A
3	gene	92.62034	92.64644	positive	MGI_C57BL6J_5826449	Gm46812	NCBI_Gene:108168880	MGI:5826449	lncRNA gene	predicted gene, 46812
3	gene	92.63906	92.64007	negative	MGI_C57BL6J_5594858	Gm35699	NCBI_Gene:102639369	MGI:5594858	lncRNA gene	predicted gene, 35699
3	gene	92.64653	92.64831	negative	MGI_C57BL6J_1914377	Lce1a1	NCBI_Gene:67127,ENSEMBL:ENSMUSG00000057609	MGI:1914377	protein coding gene	late cornified envelope 1A1
3	gene	92.65565	92.65693	negative	MGI_C57BL6J_1915970	Lce1b	NCBI_Gene:68720,ENSEMBL:ENSMUSG00000027923	MGI:1915970	protein coding gene	late cornified envelope 1B
3	pseudogene	92.66419	92.66490	positive	MGI_C57BL6J_3648077	Rpl13-ps4	NCBI_Gene:620325,ENSEMBL:ENSMUSG00000104215	MGI:3648077	pseudogene	ribosomal protein L13, pseudogene 4
3	gene	92.66861	92.67032	negative	MGI_C57BL6J_1920972	Lce1a2	NCBI_Gene:73722,ENSEMBL:ENSMUSG00000068890	MGI:1920972	protein coding gene	late cornified envelope 1A2

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
10	gene	66.29328	66.51251	negative	MGI_C57BL6J_5623562	Gm40677	NCBI_Gene:105245190	MGI:5623562	lncRNA gene	predicted gene, 40677
10	gene	66.48355	66.48368	positive	MGI_C57BL6J_5452371	Gm22594	ENSEMBL:ENSMUSG00000077439	MGI:5452371	snoRNA gene	predicted gene, 22594
10	gene	66.64092	66.64186	positive	MGI_C57BL6J_5578845	Gm28139	ENSEMBL:ENSMUSG00000101338	MGI:5578845	lncRNA gene	predicted gene 28139
10	pseudogene	66.69134	66.69161	negative	MGI_C57BL6J_6097127	Gm47894	ENSEMBL:ENSMUSG00000112247	MGI:6097127	pseudogene	predicted gene, 47894
10	gene	66.69824	66.70596	positive	MGI_C57BL6J_5590340	Gm31181	ENSEMBL:ENSMUSG00000112202	MGI:5590340	lncRNA gene	predicted gene, 31181
10	pseudogene	66.74029	66.74116	negative	MGI_C57BL6J_5010962	Gm18777	NCBI_Gene:100417714,ENSEMBL:ENSMUSG00000112159	MGI:5010962	pseudogene	predicted gene, 18777
10	gene	66.74093	66.74559	negative	MGI_C57BL6J_5590399	Gm31240	NCBI_Gene:102633406	MGI:5590399	lncRNA gene	predicted gene, 31240
10	gene	66.75945	66.76210	positive	MGI_C57BL6J_6097128	Gm47895	ENSEMBL:ENSMUSG00000112383	MGI:6097128	lncRNA gene	predicted gene, 47895
10	gene	66.80395	66.82967	negative	MGI_C57BL6J_5623563	Gm40678	NCBI_Gene:105245191	MGI:5623563	lncRNA gene	predicted gene, 40678
10	gene	66.80984	66.82235	positive	MGI_C57BL6J_6097130	Gm47896	ENSEMBL:ENSMUSG00000112425	MGI:6097130	lncRNA gene	predicted gene, 47896
10	gene	66.82417	66.82740	positive	MGI_C57BL6J_6097132	Gm47897	ENSEMBL:ENSMUSG00000112514	MGI:6097132	lncRNA gene	predicted gene, 47897
10	gene	66.83214	66.91156	negative	MGI_C57BL6J_5590575	Gm31416	NCBI_Gene:102633633	MGI:5590575	lncRNA gene	predicted gene, 31416
10	gene	66.83760	66.83950	positive	MGI_C57BL6J_6097137	Gm47900	ENSEMBL:ENSMUSG00000112379	MGI:6097137	lncRNA gene	predicted gene, 47900
10	gene	66.88967	66.89161	negative	MGI_C57BL6J_6097142	Gm47903	ENSEMBL:ENSMUSG00000112267	MGI:6097142	lncRNA gene	predicted gene, 47903
10	gene	66.91219	66.92062	negative	MGI_C57BL6J_1915738	1110002J07Rik	NCBI_Gene:68488,ENSEMBL:ENSMUSG00000097134	MGI:1915738	lncRNA gene	RIKEN cDNA 1110002J07 gene
10	gene	66.92030	66.92360	positive	MGI_C57BL6J_5477070	Gm26576	ENSEMBL:ENSMUSG00000097921	MGI:5477070	lncRNA gene	predicted gene, 26576
10	gene	67.00502	67.04133	positive	MGI_C57BL6J_5590922	Gm31763	NCBI_Gene:102634101,ENSEMBL:ENSMUSG00000112925	MGI:5590922	lncRNA gene	predicted gene, 31763
10	gene	67.00919	67.09699	negative	MGI_C57BL6J_88930	Reep3	NCBI_Gene:28193,ENSEMBL:ENSMUSG00000019873	MGI:88930	protein coding gene	receptor accessory protein 3
10	gene	67.09613	67.25633	positive	MGI_C57BL6J_1918614	Jmjd1c	NCBI_Gene:108829,ENSEMBL:ENSMUSG00000037876	MGI:1918614	protein coding gene	jumonji domain containing 1C
10	gene	67.12053	67.12478	negative	MGI_C57BL6J_5825865	Gm46228	NCBI_Gene:108167815	MGI:5825865	lncRNA gene	predicted gene, 46228
10	gene	67.17778	67.18395	positive	MGI_C57BL6J_2443021	A630074N13Rik	NA	NA	unclassified gene	RIKEN cDNA A630074N13 gene
10	gene	67.23586	67.23596	negative	MGI_C57BL6J_5456136	Gm26359	ENSEMBL:ENSMUSG00000089498	MGI:5456136	snRNA gene	predicted gene, 26359
10	gene	67.26669	67.28535	negative	MGI_C57BL6J_1354950	Nrbf2	NCBI_Gene:641340,ENSEMBL:ENSMUSG00000075000	MGI:1354950	protein coding gene	nuclear receptor binding factor 2
10	gene	67.28543	67.29316	positive	MGI_C57BL6J_5825837	Gm46200	NCBI_Gene:108167782	MGI:5825837	lncRNA gene	predicted gene, 46200
10	gene	67.29741	67.41893	positive	MGI_C57BL6J_6155108	Gm49454	ENSEMBL:ENSMUSG00000112314	MGI:6155108	lncRNA gene	predicted gene, 49454
10	gene	67.30440	67.31363	positive	MGI_C57BL6J_5825866	Gm46229	NCBI_Gene:108167816	MGI:5825866	lncRNA gene	predicted gene, 46229
10	pseudogene	67.34880	67.34896	negative	MGI_C57BL6J_6096511	Gm47516	ENSEMBL:ENSMUSG00000111908	MGI:6096511	pseudogene	predicted gene, 47516
10	gene	67.34998	67.39721	positive	MGI_C57BL6J_5825867	Gm46230	NCBI_Gene:108167817	MGI:5825867	lncRNA gene	predicted gene, 46230
10	gene	67.39968	67.41929	positive	MGI_C57BL6J_5591121	Gm31962	NCBI_Gene:102634362	MGI:5591121	lncRNA gene	predicted gene, 31962
10	gene	67.42005	67.42533	positive	MGI_C57BL6J_5591182	Gm32023	NCBI_Gene:102634442,ENSEMBL:ENSMUSG00000112848	MGI:5591182	lncRNA gene	predicted gene, 32023
10	gene	67.43609	67.44343	negative	MGI_C57BL6J_6096535	Gm47531	ENSEMBL:ENSMUSG00000112726	MGI:6096535	lncRNA gene	predicted gene, 47531
10	gene	67.48439	67.48605	negative	MGI_C57BL6J_1923024	4930403L11Rik	NA	NA	unclassified gene	RIKEN cDNA 4930403L11 gene
10	gene	67.49636	67.53534	negative	MGI_C57BL6J_5591414	Gm32255	NCBI_Gene:102634748,ENSEMBL:ENSMUSG00000112120	MGI:5591414	lncRNA gene	predicted gene, 32255
10	gene	67.50114	67.50314	negative	MGI_C57BL6J_5623564	Gm40679	NCBI_Gene:105245192	MGI:5623564	lncRNA gene	predicted gene, 40679
10	gene	67.50912	67.51154	positive	MGI_C57BL6J_5591335	Gm32176	NCBI_Gene:102634639	MGI:5591335	lncRNA gene	predicted gene, 32176
10	gene	67.53445	67.54749	positive	MGI_C57BL6J_95296	Egr2	NCBI_Gene:13654,ENSEMBL:ENSMUSG00000037868	MGI:95296	protein coding gene	early growth response 2
10	gene	67.54451	67.54896	negative	MGI_C57BL6J_2685083	Ado	NCBI_Gene:211488,ENSEMBL:ENSMUSG00000057134	MGI:2685083	protein coding gene	2-aminoethanethiol (cysteamine) dioxygenase
10	gene	67.56763	67.57199	negative	MGI_C57BL6J_1922576	4930563J15Rik	NCBI_Gene:105245193,ENSEMBL:ENSMUSG00000112141	MGI:1922576	lncRNA gene	RIKEN cDNA 4930563J15 gene
10	gene	67.57028	67.59659	positive	MGI_C57BL6J_5591523	Gm32364	NCBI_Gene:102634888,ENSEMBL:ENSMUSG00000112558	MGI:5591523	lncRNA gene	predicted gene, 32364
10	gene	67.57204	67.57426	positive	MGI_C57BL6J_3642860	Gm10797	ENSEMBL:ENSMUSG00000074999	MGI:3642860	protein coding gene	predicted gene 10797
10	gene	67.66463	67.66744	positive	MGI_C57BL6J_5591674	Gm32515	NCBI_Gene:102635092,ENSEMBL:ENSMUSG00000112097	MGI:5591674	lncRNA gene	predicted gene, 32515
10	gene	67.69352	67.70392	positive	MGI_C57BL6J_5591597	Gm32438	NCBI_Gene:102634989	MGI:5591597	lncRNA gene	predicted gene, 32438
10	gene	67.70523	67.71064	positive	MGI_C57BL6J_5623565	Gm40680	NCBI_Gene:105245194	MGI:5623565	lncRNA gene	predicted gene, 40680
10	gene	67.70784	67.70947	positive	MGI_C57BL6J_6096606	Gm47574	ENSEMBL:ENSMUSG00000112396	MGI:6096606	unclassified gene	predicted gene, 47574
10	gene	67.70859	67.71804	negative	MGI_C57BL6J_1916765	1700030E10Rik	ENSEMBL:ENSMUSG00000112619	MGI:1916765	lncRNA gene	RIKEN cDNA 1700030E10 gene
10	gene	67.74915	67.77838	negative	MGI_C57BL6J_5623566	Gm40681	NCBI_Gene:105245195	MGI:5623566	lncRNA gene	predicted gene, 40681
10	gene	67.78555	67.78883	positive	MGI_C57BL6J_1922475	4930543I11Rik	NCBI_Gene:102635169,ENSEMBL:ENSMUSG00000112537	MGI:1922475	lncRNA gene	RIKEN cDNA 4930543I11 gene
10	gene	67.78575	67.83640	positive	MGI_C57BL6J_6215275	Gm49766	ENSEMBL:ENSMUSG00000116971	MGI:6215275	lncRNA gene	predicted gene, 49766
10	pseudogene	67.79273	67.79326	negative	MGI_C57BL6J_5588933	Gm29774	NCBI_Gene:101056081,ENSEMBL:ENSMUSG00000111956	MGI:5588933	pseudogene	predicted gene, 29774
10	gene	67.88610	67.91266	negative	MGI_C57BL6J_2143676	Zfp365	NCBI_Gene:216049,ENSEMBL:ENSMUSG00000037855	MGI:2143676	protein coding gene	zinc finger protein 365
10	gene	67.96248	67.97371	negative	MGI_C57BL6J_1922317	4930521O17Rik	NCBI_Gene:75067,ENSEMBL:ENSMUSG00000112899	MGI:1922317	lncRNA gene	RIKEN cDNA 4930521O17 gene
10	gene	67.97957	68.05974	positive	MGI_C57BL6J_2158417	Rtkn2	NCBI_Gene:170799,ENSEMBL:ENSMUSG00000037846	MGI:2158417	protein coding gene	rhotekin 2
10	gene	68.02545	68.02663	negative	MGI_C57BL6J_3801951	Gm16212	ENSEMBL:ENSMUSG00000086838	MGI:3801951	lncRNA gene	predicted gene 16212
10	gene	68.09252	68.27874	negative	MGI_C57BL6J_2175912	Arid5b	NCBI_Gene:71371,ENSEMBL:ENSMUSG00000019947	MGI:2175912	protein coding gene	AT rich interactive domain 5B (MRF1-like)
10	gene	68.31301	68.32698	positive	MGI_C57BL6J_6095801	Gm47078	ENSEMBL:ENSMUSG00000112275	MGI:6095801	lncRNA gene	predicted gene, 47078
10	gene	68.31906	68.32114	negative	MGI_C57BL6J_1922398	4930545H06Rik	NCBI_Gene:75148,ENSEMBL:ENSMUSG00000112157	MGI:1922398	lncRNA gene	RIKEN cDNA 4930545H06 gene
10	gene	68.32564	68.34030	negative	MGI_C57BL6J_5591907	Gm32748	NCBI_Gene:102635395	MGI:5591907	lncRNA gene	predicted gene, 32748
10	gene	68.38659	68.43979	positive	MGI_C57BL6J_5623568	Gm40683	NCBI_Gene:105245197	MGI:5623568	lncRNA gene	predicted gene, 40683
10	gene	68.43095	68.54192	negative	MGI_C57BL6J_1920537	Cabcoco1	NCBI_Gene:73287,ENSEMBL:ENSMUSG00000019945	MGI:1920537	protein coding gene	ciliary associated calcium binding coiled-coil 1
10	gene	68.53009	68.53394	positive	MGI_C57BL6J_5592031	Gm32872	NCBI_Gene:102635578,ENSEMBL:ENSMUSG00000112793	MGI:5592031	lncRNA gene	predicted gene, 32872
10	pseudogene	68.69150	68.69237	negative	MGI_C57BL6J_3647263	Gm7594	NCBI_Gene:665342,ENSEMBL:ENSMUSG00000112434	MGI:3647263	pseudogene	predicted gene 7594
10	gene	68.72365	68.78266	positive	MGI_C57BL6J_2143537	Tmem26	NCBI_Gene:327766,ENSEMBL:ENSMUSG00000060044	MGI:2143537	protein coding gene	transmembrane protein 26
10	gene	68.79890	68.82282	negative	MGI_C57BL6J_5592090	Gm32931	NCBI_Gene:102635644	MGI:5592090	lncRNA gene	predicted gene, 32931
10	gene	68.90280	68.90450	negative	MGI_C57BL6J_1920605	1700048P04Rik	ENSEMBL:ENSMUSG00000112333	MGI:1920605	lncRNA gene	RIKEN cDNA 1700048P04 gene
10	gene	69.02026	69.04451	negative	MGI_C57BL6J_5592194	Gm33035	NCBI_Gene:102635787,ENSEMBL:ENSMUSG00000112331	MGI:5592194	lncRNA gene	predicted gene, 33035
10	gene	69.07235	69.08988	negative	MGI_C57BL6J_5592289	Gm33130	NCBI_Gene:102635915	MGI:5592289	lncRNA gene	predicted gene, 33130
10	gene	69.09666	69.09787	negative	MGI_C57BL6J_6095844	Gm47107	ENSEMBL:ENSMUSG00000112083	MGI:6095844	lncRNA gene	predicted gene, 47107
10	gene	69.11245	69.11744	positive	MGI_C57BL6J_5623569	Gm40684	NCBI_Gene:105245198	MGI:5623569	lncRNA gene	predicted gene, 40684
10	gene	69.13288	69.13300	positive	MGI_C57BL6J_5453949	Gm24172	ENSEMBL:ENSMUSG00000077315	MGI:5453949	snoRNA gene	predicted gene, 24172
10	gene	69.14775	69.15113	negative	MGI_C57BL6J_5592422	Gm33263	NCBI_Gene:102636096,ENSEMBL:ENSMUSG00000111941	MGI:5592422	lncRNA gene	predicted gene, 33263
10	gene	69.15128	69.29179	positive	MGI_C57BL6J_1916538	Rhobtb1	NCBI_Gene:69288,ENSEMBL:ENSMUSG00000019944	MGI:1916538	protein coding gene	Rho-related BTB domain containing 1
10	gene	69.20946	69.21316	negative	MGI_C57BL6J_2444562	A930033H14Rik	NCBI_Gene:320700,ENSEMBL:ENSMUSG00000090622	MGI:2444562	protein coding gene	RIKEN cDNA A930033H14 gene
10	gene	69.31204	69.31542	positive	MGI_C57BL6J_5623570	Gm40685	NCBI_Gene:105245199,ENSEMBL:ENSMUSG00000112798	MGI:5623570	lncRNA gene	predicted gene, 40685
10	pseudogene	69.32520	69.32567	positive	MGI_C57BL6J_3780816	Rpl30-ps7	NCBI_Gene:100040182	MGI:3780816	pseudogene	ribosomal protein L30, pseudogene 7
10	gene	69.32636	69.32821	negative	MGI_C57BL6J_1921141	4930423B08Rik	NCBI_Gene:102636160	MGI:1921141	lncRNA gene	RIKEN cDNA 4930423B08 gene
10	gene	69.33515	69.35294	negative	MGI_C57BL6J_88351	Cdk1	NCBI_Gene:12534,ENSEMBL:ENSMUSG00000019942	MGI:88351	protein coding gene	cyclin-dependent kinase 1
10	pseudogene	69.37269	69.37331	negative	MGI_C57BL6J_6096016	Gm47211	ENSEMBL:ENSMUSG00000112509	MGI:6096016	pseudogene	predicted gene, 47211
10	gene	69.39877	69.60214	positive	MGI_C57BL6J_3036232	4833431D13Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 4833431D13 gene
10	gene	69.39877	70.02744	positive	MGI_C57BL6J_88026	Ank3	NCBI_Gene:11735,ENSEMBL:ENSMUSG00000069601	MGI:88026	protein coding gene	ankyrin 3, epithelial
10	pseudogene	69.42268	69.42375	negative	MGI_C57BL6J_5010821	Gm18636	NCBI_Gene:100417479,ENSEMBL:ENSMUSG00000111899	MGI:5010821	pseudogene	predicted gene, 18636
10	gene	69.43900	69.43974	negative	MGI_C57BL6J_1925199	A930011B18Rik	NA	NA	unclassified gene	RIKEN cDNA A930011B18 gene
10	gene	69.54109	69.55651	negative	MGI_C57BL6J_5592623	Gm33464	NCBI_Gene:102636382	MGI:5592623	lncRNA gene	predicted gene, 33464
10	pseudogene	69.56567	69.56693	negative	MGI_C57BL6J_5825868	Gm46231	NCBI_Gene:108167818,ENSEMBL:ENSMUSG00000112729	MGI:5825868	pseudogene	predicted gene, 46231
10	gene	69.68908	69.69018	positive	MGI_C57BL6J_1924544	9430064K01Rik	NA	NA	unclassified gene	RIKEN cDNA 9430064K01 gene
10	gene	69.86268	69.86639	negative	MGI_C57BL6J_5592575	Gm33416	NCBI_Gene:102636314	MGI:5592575	lncRNA gene	predicted gene, 33416
10	gene	69.90705	69.90931	negative	MGI_C57BL6J_5592520	Gm33361	NCBI_Gene:102636238	MGI:5592520	lncRNA gene	predicted gene, 33361
10	gene	69.90718	69.90798	positive	MGI_C57BL6J_1920163	2900006A17Rik	NA	NA	unclassified gene	RIKEN cDNA 2900006A17 gene
10	gene	70.09688	70.19320	positive	MGI_C57BL6J_1923801	Ccdc6	NCBI_Gene:76551,ENSEMBL:ENSMUSG00000048701	MGI:1923801	protein coding gene	coiled-coil domain containing 6
10	gene	70.20466	70.21971	positive	MGI_C57BL6J_1916813	Mrln	NCBI_Gene:69563,ENSEMBL:ENSMUSG00000019933	MGI:1916813	protein coding gene	myoregulin
10	gene	70.24510	70.28597	positive	MGI_C57BL6J_1914109	Slc16a9	NCBI_Gene:66859,ENSEMBL:ENSMUSG00000037762	MGI:1914109	protein coding gene	solute carrier family 16 (monocarboxylic acid transporters), member 9
10	gene	70.28423	70.28495	negative	MGI_C57BL6J_3779671	Gm7097	ENSEMBL:ENSMUSG00000089835	MGI:3779671	lncRNA gene	predicted gene 7097
10	pseudogene	70.28555	70.28818	negative	MGI_C57BL6J_3708538	Gm9877	ENSEMBL:ENSMUSG00000052426	MGI:3708538	pseudogene	predicted gene 9877
10	gene	70.28977	70.30845	positive	MGI_C57BL6J_5623572	Gm40687	NCBI_Gene:105245201	MGI:5623572	lncRNA gene	predicted gene, 40687
10	gene	70.29340	70.29406	positive	MGI_C57BL6J_5592863	Gm33704	NCBI_Gene:102636706	MGI:5592863	lncRNA gene	predicted gene, 33704
10	pseudogene	70.33830	70.33847	positive	MGI_C57BL6J_5012293	Gm20108	NCBI_Gene:102636776,ENSEMBL:ENSMUSG00000112676	MGI:5012293	pseudogene	predicted gene, 20108
10	gene	70.41246	70.41558	negative	MGI_C57BL6J_6097213	Gm47946	ENSEMBL:ENSMUSG00000112884	MGI:6097213	lncRNA gene	predicted gene, 47946
10	gene	70.44008	70.55874	positive	MGI_C57BL6J_1918971	Fam13c	NCBI_Gene:71721,ENSEMBL:ENSMUSG00000043259	MGI:1918971	protein coding gene	family with sequence similarity 13, member C
10	gene	70.50119	70.50150	negative	MGI_C57BL6J_5452097	Gm22320	ENSEMBL:ENSMUSG00000087774	MGI:5452097	unclassified non-coding RNA gene	predicted gene, 22320
10	pseudogene	70.50477	70.50734	negative	MGI_C57BL6J_5588942	Gm29783	NCBI_Gene:101056119,ENSEMBL:ENSMUSG00000112273	MGI:5588942	pseudogene	predicted gene, 29783
10	gene	70.55768	70.65596	negative	MGI_C57BL6J_1918161	Phyhipl	NCBI_Gene:70911,ENSEMBL:ENSMUSG00000037747	MGI:1918161	protein coding gene	phytanoyl-CoA hydroxylase interacting protein-like
10	gene	70.59978	70.68021	positive	MGI_C57BL6J_5825869	Gm46232	NCBI_Gene:108167819	MGI:5825869	lncRNA gene	predicted gene, 46232
10	gene	70.59983	70.60048	positive	MGI_C57BL6J_2143903	BB187676	NA	NA	unclassified gene	expressed sequence BB187676
10	gene	70.60105	70.65596	negative	MGI_C57BL6J_2442462	D630013N20Rik	NCBI_Gene:319646	MGI:2442462	lncRNA gene	RIKEN cDNA D630013N20 gene
10	gene	70.62673	70.63526	positive	MGI_C57BL6J_5623573	Gm40688	NCBI_Gene:105245202	MGI:5623573	lncRNA gene	predicted gene, 40688
10	gene	70.71493	70.74045	negative	MGI_C57BL6J_5593138	Gm33979	NCBI_Gene:102637077,ENSEMBL:ENSMUSG00000112607	MGI:5593138	lncRNA gene	predicted gene, 33979
10	gene	70.80724	70.81382	positive	MGI_C57BL6J_6097330	Gm48021	ENSEMBL:ENSMUSG00000112752	MGI:6097330	lncRNA gene	predicted gene, 48021
10	gene	70.81385	70.81605	positive	MGI_C57BL6J_6097332	Gm48022	ENSEMBL:ENSMUSG00000112320	MGI:6097332	lncRNA gene	predicted gene, 48022
10	gene	70.83075	70.84294	positive	MGI_C57BL6J_5623574	Gm40689	NCBI_Gene:105245203,ENSEMBL:ENSMUSG00000112870	MGI:5623574	lncRNA gene	predicted gene, 40689
10	gene	70.84702	70.85373	positive	MGI_C57BL6J_6097334	Gm48023	ENSEMBL:ENSMUSG00000112883	MGI:6097334	lncRNA gene	predicted gene, 48023
10	gene	70.86340	70.86845	negative	MGI_C57BL6J_6097336	Gm48024	ENSEMBL:ENSMUSG00000112125	MGI:6097336	lncRNA gene	predicted gene, 48024
10	gene	70.86862	70.93432	positive	MGI_C57BL6J_1922439	4930533K18Rik	NCBI_Gene:75189,ENSEMBL:ENSMUSG00000047692	MGI:1922439	lncRNA gene	RIKEN cDNA 4930533K18 gene
10	gene	70.87000	70.87242	negative	MGI_C57BL6J_6097351	Gm48036	ENSEMBL:ENSMUSG00000112032	MGI:6097351	lncRNA gene	predicted gene, 48036
10	gene	70.88210	70.88221	positive	MGI_C57BL6J_5454263	Gm24486	ENSEMBL:ENSMUSG00000094703	MGI:5454263	snRNA gene	predicted gene, 24486
10	gene	70.92283	71.15970	negative	MGI_C57BL6J_1933388	Bicc1	NCBI_Gene:83675,ENSEMBL:ENSMUSG00000014329	MGI:1933388	protein coding gene	BicC family RNA binding protein 1
10	gene	70.97551	70.99304	negative	MGI_C57BL6J_6097338	Gm48025	ENSEMBL:ENSMUSG00000112745	MGI:6097338	lncRNA gene	predicted gene, 48025
10	gene	71.08288	71.08365	positive	MGI_C57BL6J_3783091	Gm15647	ENSEMBL:ENSMUSG00000090212	MGI:3783091	lncRNA gene	predicted gene 15647
10	gene	71.12566	71.14157	positive	MGI_C57BL6J_5593296	Gm34137	NCBI_Gene:102637280	MGI:5593296	lncRNA gene	predicted gene, 34137
10	pseudogene	71.14816	71.14981	positive	MGI_C57BL6J_5591184	Gm32025	NCBI_Gene:102634444,ENSEMBL:ENSMUSG00000112566	MGI:5591184	pseudogene	predicted gene, 32025
10	pseudogene	71.16291	71.16338	positive	MGI_C57BL6J_3643973	Gm6331	NCBI_Gene:622551,ENSEMBL:ENSMUSG00000112748	MGI:3643973	pseudogene	predicted gene 6331
10	gene	71.16874	71.18205	negative	MGI_C57BL6J_2442303	C730027H18Rik	NCBI_Gene:319572,ENSEMBL:ENSMUSG00000112189,ENSEMBL:ENSMUSG00000112366	MGI:2442303	lncRNA gene	RIKEN cDNA C730027H18 gene
10	gene	71.18104	71.20449	positive	MGI_C57BL6J_1925888	1700113B09Rik	NCBI_Gene:78638,ENSEMBL:ENSMUSG00000112028	MGI:1925888	lncRNA gene	RIKEN cDNA 1700113B09 gene
10	gene	71.18117	71.20114	positive	MGI_C57BL6J_5593487	Gm34328	NCBI_Gene:102637547	MGI:5593487	lncRNA gene	predicted gene, 34328
10	gene	71.22546	71.23833	negative	MGI_C57BL6J_107810	Tfam	NCBI_Gene:21780,ENSEMBL:ENSMUSG00000003923	MGI:107810	protein coding gene	transcription factor A, mitochondrial
10	gene	71.25498	71.28526	negative	MGI_C57BL6J_2384911	Ube2d1	NCBI_Gene:216080,ENSEMBL:ENSMUSG00000019927	MGI:2384911	protein coding gene	ubiquitin-conjugating enzyme E2D 1
10	gene	71.28773	71.29248	positive	MGI_C57BL6J_5593535	Gm34376	NCBI_Gene:102637612,ENSEMBL:ENSMUSG00000112813	MGI:5593535	lncRNA gene	predicted gene, 34376
10	gene	71.31074	71.31398	positive	MGI_C57BL6J_5313056	Gm20609	NCBI_Gene:102637684,ENSEMBL:ENSMUSG00000093732	MGI:5313056	lncRNA gene	predicted gene 20609
10	pseudogene	71.31873	71.31943	positive	MGI_C57BL6J_3643734	Rpl19-ps2	NCBI_Gene:665472,ENSEMBL:ENSMUSG00000112582	MGI:3643734	pseudogene	ribosomal protein L19, pseudogene 2
10	gene	71.33048	71.34495	negative	MGI_C57BL6J_1261855	Cisd1	NCBI_Gene:52637,ENSEMBL:ENSMUSG00000037710	MGI:1261855	protein coding gene	CDGSH iron sulfur domain 1
10	gene	71.33670	71.33962	negative	MGI_C57BL6J_2143791	4932439E07Rik	NA	NA	unclassified gene	RIKEN cDNA 4932439E07 gene
10	gene	71.34776	71.43333	positive	MGI_C57BL6J_1916968	Ipmk	NCBI_Gene:69718,ENSEMBL:ENSMUSG00000060733	MGI:1916968	protein coding gene	inositol polyphosphate multikinase
10	gene	71.47640	71.48552	negative	MGI_C57BL6J_1922563	4930551I15Rik	ENSEMBL:ENSMUSG00000112108	MGI:1922563	lncRNA gene	RIKEN cDNA 4930551I15 gene
10	pseudogene	71.48250	71.48364	positive	MGI_C57BL6J_5825870	Gm46233	NCBI_Gene:108167820,ENSEMBL:ENSMUSG00000112608	MGI:5825870	pseudogene	predicted gene, 46233
10	gene	71.52044	71.52230	negative	MGI_C57BL6J_6095721	Gm47028	ENSEMBL:ENSMUSG00000112416	MGI:6095721	lncRNA gene	predicted gene, 47028
10	gene	71.52727	71.56537	positive	MGI_C57BL6J_5593645	Gm34486	NCBI_Gene:102637756	MGI:5593645	lncRNA gene	predicted gene, 34486
10	gene	71.52728	71.67884	positive	MGI_C57BL6J_5593703	Gm34544	NCBI_Gene:102637834,ENSEMBL:ENSMUSG00000112126	MGI:5593703	lncRNA gene	predicted gene, 34544
10	pseudogene	71.59585	71.59713	negative	MGI_C57BL6J_3644095	Gm4797	NCBI_Gene:216081,ENSEMBL:ENSMUSG00000111965	MGI:3644095	pseudogene	predicted gene 4797
10	pseudogene	71.61165	71.61307	negative	MGI_C57BL6J_5011259	Gm19074	NCBI_Gene:100418206,ENSEMBL:ENSMUSG00000112624	MGI:5011259	pseudogene	predicted gene, 19074
10	pseudogene	71.70372	71.70417	positive	MGI_C57BL6J_6095749	Gm47045	ENSEMBL:ENSMUSG00000112152	MGI:6095749	pseudogene	predicted gene, 47045
10	pseudogene	71.70429	71.70786	positive	MGI_C57BL6J_3644096	Gm4798	NCBI_Gene:216082,ENSEMBL:ENSMUSG00000112714	MGI:3644096	pseudogene	predicted pseudogene 4798
10	pseudogene	71.71678	71.71802	negative	MGI_C57BL6J_3644102	Gm6362	NCBI_Gene:622812,ENSEMBL:ENSMUSG00000112717	MGI:3644102	pseudogene	predicted gene 6362
10	pseudogene	71.79895	71.79991	negative	MGI_C57BL6J_3648383	Gm5080	NCBI_Gene:327767,ENSEMBL:ENSMUSG00000111999	MGI:3648383	pseudogene	predicted gene 5080
10	gene	71.89804	71.89817	positive	MGI_C57BL6J_5452714	Gm22937	ENSEMBL:ENSMUSG00000077142	MGI:5452714	snoRNA gene	predicted gene, 22937
10	gene	71.96261	72.00535	positive	MGI_C57BL6J_5623575	Gm40690	NCBI_Gene:105245205	MGI:5623575	lncRNA gene	predicted gene, 40690
10	pseudogene	71.97988	71.98069	negative	MGI_C57BL6J_1920633	1700049L16Rik	NCBI_Gene:108950,ENSEMBL:ENSMUSG00000043859	MGI:1920633	pseudogene	RIKEN cDNA 1700049L16 gene
10	pseudogene	72.01921	72.01952	positive	MGI_C57BL6J_6095770	Gm47060	ENSEMBL:ENSMUSG00000112185	MGI:6095770	pseudogene	predicted gene, 47060
10	gene	72.02698	72.11244	positive	MGI_C57BL6J_5593768	Gm34609	NCBI_Gene:102637916,ENSEMBL:ENSMUSG00000112414	MGI:5593768	lncRNA gene	predicted gene, 34609
10	pseudogene	72.30920	72.31184	positive	MGI_C57BL6J_3704365	Gm9923	NCBI_Gene:100040505,ENSEMBL:ENSMUSG00000053830	MGI:3704365	pseudogene	predicted pseudogene 9923
10	gene	72.52755	72.52768	positive	MGI_C57BL6J_5454761	Gm24984	ENSEMBL:ENSMUSG00000077642	MGI:5454761	snoRNA gene	predicted gene, 24984
10	gene	72.62307	72.64304	negative	MGI_C57BL6J_5593818	Gm34659	NCBI_Gene:102637980	MGI:5593818	lncRNA gene	predicted gene, 34659
10	gene	72.65484	72.67496	positive	MGI_C57BL6J_1289227	Zwint	NCBI_Gene:52696,ENSEMBL:ENSMUSG00000019923	MGI:1289227	protein coding gene	ZW10 interactor
10	gene	72.65790	72.66177	positive	MGI_C57BL6J_1916486	2610034E01Rik	NA	NA	unclassified gene	RIKEN cDNA 2610034E01 gene
10	pseudogene	72.71793	72.71849	positive	MGI_C57BL6J_6095826	Gm47094	ENSEMBL:ENSMUSG00000112862	MGI:6095826	pseudogene	predicted gene, 47094
10	gene	72.93994	72.97316	negative	MGI_C57BL6J_5593935	Gm34776	NCBI_Gene:102638141,ENSEMBL:ENSMUSG00000112168	MGI:5593935	lncRNA gene	predicted gene, 34776
10	gene	72.97330	73.08670	negative	MGI_C57BL6J_3041175	A330049N07Rik	NCBI_Gene:327768,ENSEMBL:ENSMUSG00000111994	MGI:3041175	lncRNA gene	RIKEN cDNA A330049N07 gene
10	gene	73.09627	74.64983	positive	MGI_C57BL6J_1891428	Pcdh15	NCBI_Gene:11994,ENSEMBL:ENSMUSG00000052613	MGI:1891428	protein coding gene	protocadherin 15
10	gene	73.18293	73.18332	negative	MGI_C57BL6J_5610666	Gm37438	ENSEMBL:ENSMUSG00000102584	MGI:5610666	unclassified gene	predicted gene, 37438
10	gene	73.20140	73.32717	negative	MGI_C57BL6J_3705254	Gm15398	ENSEMBL:ENSMUSG00000085456	MGI:3705254	lncRNA gene	predicted gene 15398
10	pseudogene	73.20153	73.20277	positive	MGI_C57BL6J_3646275	Gm5778	NCBI_Gene:544705,ENSEMBL:ENSMUSG00000091825	MGI:3646275	pseudogene	predicted gene 5778
10	pseudogene	73.27574	73.27609	positive	MGI_C57BL6J_6095833	Gm47098	ENSEMBL:ENSMUSG00000112838	MGI:6095833	pseudogene	predicted gene, 47098
10	pseudogene	73.37233	73.37603	negative	MGI_C57BL6J_5011353	Gm19168	NCBI_Gene:100418377,ENSEMBL:ENSMUSG00000112427	MGI:5011353	pseudogene	predicted gene, 19168
10	gene	73.48997	73.51839	positive	MGI_C57BL6J_3705298	Gm15397	ENSEMBL:ENSMUSG00000085176	MGI:3705298	lncRNA gene	predicted gene 15397
10	pseudogene	73.69010	73.69101	negative	MGI_C57BL6J_3642965	Gm6407	NCBI_Gene:623191,ENSEMBL:ENSMUSG00000093548	MGI:3642965	pseudogene	predicted gene 6407
10	gene	73.88745	73.88812	positive	MGI_C57BL6J_1925054	A930019H14Rik	NA	NA	unclassified gene	RIKEN cDNA A930019H14 gene
10	gene	74.12754	74.13688	negative	MGI_C57BL6J_5623576	Gm40691	NCBI_Gene:105245206	MGI:5623576	lncRNA gene	predicted gene, 40691
10	pseudogene	74.82063	74.82149	positive	MGI_C57BL6J_3644650	Gm7034	NCBI_Gene:630453,ENSEMBL:ENSMUSG00000112686	MGI:3644650	pseudogene	predicted gene 7034
10	pseudogene	74.86286	74.86351	negative	MGI_C57BL6J_3647564	Gm6419	NCBI_Gene:623346,ENSEMBL:ENSMUSG00000072407	MGI:3647564	pseudogene	predicted gene 6419
10	gene	74.95748	75.03435	negative	MGI_C57BL6J_1918486	Rsph14	NCBI_Gene:71236,ENSEMBL:ENSMUSG00000009070	MGI:1918486	protein coding gene	radial spoke head homolog 14 (Chlamydomonas)
10	gene	74.96709	75.01691	positive	MGI_C57BL6J_95780	Gnaz	NCBI_Gene:14687,ENSEMBL:ENSMUSG00000040009	MGI:95780	protein coding gene	guanine nucleotide binding protein, alpha z subunit

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
10	gene	81.64906	81.66736	positive	MGI_C57BL6J_3809656	Gm10778	NCBI_Gene:100233208,ENSEMBL:ENSMUSG00000096856	MGI:3809656	protein coding gene	predicted gene 10778
10	pseudogene	81.67912	81.68051	positive	MGI_C57BL6J_6096529	Gm47527	ENSEMBL:ENSMUSG00000112585	MGI:6096529	pseudogene	predicted gene, 47527
10	pseudogene	81.69368	81.69524	negative	MGI_C57BL6J_3645531	Gm8112	NCBI_Gene:108167775,ENSEMBL:ENSMUSG00000112001	MGI:3645531	pseudogene	predicted gene 8112
10	gene	81.70419	81.72669	positive	MGI_C57BL6J_1920860	Zfp433	NCBI_Gene:73610,ENSEMBL:ENSMUSG00000096795	MGI:1920860	protein coding gene	zinc finger protein 433
10	pseudogene	81.71460	81.71650	positive	MGI_C57BL6J_3647617	Gm8249	NCBI_Gene:105245234,ENSEMBL:ENSMUSG00000112061	MGI:3647617	pseudogene	predicted gene 8249
10	pseudogene	81.71704	81.71756	negative	MGI_C57BL6J_6096532	Gm47529	ENSEMBL:ENSMUSG00000112339	MGI:6096532	pseudogene	predicted gene, 47529
10	pseudogene	81.72790	81.72909	positive	MGI_C57BL6J_3642939	Gm5173	NCBI_Gene:382388,ENSEMBL:ENSMUSG00000112621	MGI:3642939	pseudogene	predicted gene 5173
10	gene	81.74282	81.77116	negative	MGI_C57BL6J_3809197	Gm3055	NCBI_Gene:100040944,ENSEMBL:ENSMUSG00000094622	MGI:3809197	protein coding gene	predicted gene 3055
10	pseudogene	81.80443	81.80570	positive	MGI_C57BL6J_6096545	Gm47537	ENSEMBL:ENSMUSG00000112877	MGI:6096545	pseudogene	predicted gene, 47537
10	gene	81.81194	81.82649	positive	MGI_C57BL6J_3644409	Gm4767	NCBI_Gene:210583,ENSEMBL:ENSMUSG00000094076	MGI:3644409	protein coding gene	predicted gene 4767
10	pseudogene	81.81843	81.81898	negative	MGI_C57BL6J_3647363	Gm8264	NCBI_Gene:666738,ENSEMBL:ENSMUSG00000112740	MGI:3647363	pseudogene	predicted gene 8264
10	pseudogene	81.85277	81.85332	negative	MGI_C57BL6J_3647467	Gm8137	NCBI_Gene:666501,ENSEMBL:ENSMUSG00000112697	MGI:3647467	pseudogene	predicted gene 8137
10	gene	81.86344	81.88291	positive	MGI_C57BL6J_5591846	Gm32687	NCBI_Gene:102635315,ENSEMBL:ENSMUSG00000112640	MGI:5591846	protein coding gene	predicted gene, 32687
10	pseudogene	81.87371	81.87557	positive	MGI_C57BL6J_3648016	Gm8274	NCBI_Gene:105245237,ENSEMBL:ENSMUSG00000112196	MGI:3648016	pseudogene	predicted gene 8274
10	pseudogene	81.87615	81.87667	negative	MGI_C57BL6J_6096547	Gm47539	ENSEMBL:ENSMUSG00000112760	MGI:6096547	pseudogene	predicted gene, 47539
10	pseudogene	81.88699	81.88818	positive	MGI_C57BL6J_3644502	Gm8153	NCBI_Gene:666537,ENSEMBL:ENSMUSG00000112311	MGI:3644502	pseudogene	predicted gene 8153
10	gene	81.90191	81.93127	negative	MGI_C57BL6J_3696710	Zfp781	NCBI_Gene:331188,ENSEMBL:ENSMUSG00000096718	MGI:3696710	protein coding gene	zinc finger protein 781
10	pseudogene	81.96380	81.96509	positive	MGI_C57BL6J_6096560	Gm47546	ENSEMBL:ENSMUSG00000112205	MGI:6096560	pseudogene	predicted gene, 47546
10	gene	81.97809	81.99536	positive	MGI_C57BL6J_5011987	Gm19802	NCBI_Gene:105245236	MGI:5011987	protein coding gene	predicted gene, 19802
10	pseudogene	81.98590	81.98645	negative	MGI_C57BL6J_3647883	Gm8158	NCBI_Gene:666548,ENSEMBL:ENSMUSG00000112051	MGI:3647883	pseudogene	predicted gene 8158
10	gene	81.99597	82.01164	positive	MGI_C57BL6J_3642231	Gm10777	NCBI_Gene:102635133	MGI:3642231	lncRNA gene	predicted gene 10777
10	pseudogene	82.00829	82.00981	positive	MGI_C57BL6J_3648461	Gm8290	NCBI_Gene:666790,ENSEMBL:ENSMUSG00000111985	MGI:3648461	pseudogene	predicted gene 8290
10	pseudogene	82.00948	82.00980	negative	MGI_C57BL6J_5825831	Gm46194	NCBI_Gene:108167776,ENSEMBL:ENSMUSG00000112502	MGI:5825831	pseudogene	predicted gene, 46194
10	gene	82.01170	82.01723	positive	MGI_C57BL6J_5592537	Gm33378	NCBI_Gene:102636264,ENSEMBL:ENSMUSG00000112790	MGI:5592537	protein coding gene	predicted gene, 33378
10	pseudogene	82.02053	82.02171	positive	MGI_C57BL6J_3644928	Gm8170	NCBI_Gene:666571,ENSEMBL:ENSMUSG00000112381	MGI:3644928	pseudogene	predicted gene 8170
10	gene	82.04464	82.04804	negative	MGI_C57BL6J_3034336	AL117821	NA	NA	unclassified gene	expressed sequence AL117821
10	gene	82.04645	82.04805	negative	MGI_C57BL6J_5825832	Gm46195	NCBI_Gene:108167777	MGI:5825832	lncRNA gene	predicted gene, 46195
10	gene	82.04809	82.07773	positive	MGI_C57BL6J_3040689	Zfp873	NCBI_Gene:408062,ENSEMBL:ENSMUSG00000061371	MGI:3040689	protein coding gene	zinc finger protein 873
10	pseudogene	82.05611	82.05724	negative	MGI_C57BL6J_5010741	Gm18556	NCBI_Gene:100417356,ENSEMBL:ENSMUSG00000112373	MGI:5010741	pseudogene	predicted gene, 18556
10	gene	82.08301	82.08362	negative	MGI_C57BL6J_3041223	D430050E20Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA D430050E20 gene
10	gene	82.08332	82.11122	positive	MGI_C57BL6J_2670978	BC024063	NCBI_Gene:666584,ENSEMBL:ENSMUSG00000112160	MGI:2670978	protein coding gene	cDNA sequence BC024063
10	gene	82.08341	82.08567	positive	MGI_C57BL6J_3041160	4933439G19Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 4933439G19 gene
10	gene	82.12668	82.12829	negative	MGI_C57BL6J_1918064	4921506L19Rik	NA	NA	unclassified gene	RIKEN cDNA 4921506L19 gene
10	gene	82.12801	82.15306	positive	MGI_C57BL6J_2143755	AU041133	NCBI_Gene:216177,ENSEMBL:ENSMUSG00000078435	MGI:2143755	protein coding gene	expressed sequence AU041133
10	gene	82.15710	82.16046	positive	MGI_C57BL6J_6096602	Gm47572	ENSEMBL:ENSMUSG00000112922	MGI:6096602	unclassified gene	predicted gene, 47572
10	gene	82.16425	82.16678	positive	MGI_C57BL6J_6096604	Gm47573	ENSEMBL:ENSMUSG00000112847	MGI:6096604	unclassified gene	predicted gene, 47573
10	gene	82.17763	82.19129	positive	MGI_C57BL6J_5623605	Gm40720	NCBI_Gene:105245239	MGI:5623605	lncRNA gene	predicted gene, 40720
10	gene	82.17824	82.20149	positive	MGI_C57BL6J_3801804	Gm15608	NCBI_Gene:105245241,ENSEMBL:ENSMUSG00000112110	MGI:3801804	lncRNA gene	predicted gene 15608
10	gene	82.17842	82.18109	positive	MGI_C57BL6J_3642233	Gm10776	NA	NA	unclassified gene	predicted gene 10776
10	pseudogene	82.21905	82.22446	positive	MGI_C57BL6J_3782155	Gm3982	NCBI_Gene:105245240	MGI:3782155	pseudogene	predicted gene 3982
10	gene	82.22457	82.24128	negative	MGI_C57BL6J_3621440	Zfp938	NCBI_Gene:237411,ENSEMBL:ENSMUSG00000062931	MGI:3621440	protein coding gene	zinc finger protein 938
10	pseudogene	82.26645	82.26687	negative	MGI_C57BL6J_6096302	Gm47382	ENSEMBL:ENSMUSG00000111930	MGI:6096302	pseudogene	predicted gene, 47382
10	gene	82.28211	82.31658	negative	MGI_C57BL6J_3045298	4932415D10Rik	NCBI_Gene:102635990,ENSEMBL:ENSMUSG00000044581	MGI:3045298	protein coding gene	RIKEN cDNA 4932415D10 gene
10	gene	82.31538	82.31656	negative	MGI_C57BL6J_1918439	4933426I03Rik	NA	NA	unclassified gene	RIKEN cDNA 4933426I03 gene
10	gene	82.35422	82.42288	positive	MGI_C57BL6J_3643133	Gm4924	NCBI_Gene:237412,ENSEMBL:ENSMUSG00000073427	MGI:3643133	protein coding gene	predicted gene 4924
10	pseudogene	82.43070	82.43239	positive	MGI_C57BL6J_3646272	Gm8188	NCBI_Gene:666611,ENSEMBL:ENSMUSG00000112163	MGI:3646272	pseudogene	predicted gene 8188
10	pseudogene	82.44262	82.44294	positive	MGI_C57BL6J_6096993	Gm47809	ENSEMBL:ENSMUSG00000112070	MGI:6096993	pseudogene	predicted gene, 47809
10	gene	82.48653	82.49262	negative	MGI_C57BL6J_2686399	Gm1553	NCBI_Gene:432480,ENSEMBL:ENSMUSG00000094186	MGI:2686399	protein coding gene	predicted gene 1553
10	pseudogene	82.56677	82.56751	positive	MGI_C57BL6J_5011371	Gm19186	NCBI_Gene:100418403,ENSEMBL:ENSMUSG00000112560	MGI:5011371	pseudogene	predicted gene, 19186
10	pseudogene	82.58538	82.58754	positive	MGI_C57BL6J_3645307	Ap3m1-ps	NCBI_Gene:544716,ENSEMBL:ENSMUSG00000094683	MGI:3645307	pseudogene	adaptor-related protein complex 3, mu 1 subunit, pseudogene
10	gene	82.61326	82.61895	negative	MGI_C57BL6J_5623606	Gm40721	NCBI_Gene:105245242	MGI:5623606	lncRNA gene	predicted gene, 40721
10	gene	82.61985	82.62323	negative	MGI_C57BL6J_3698433	1190007I07Rik	NCBI_Gene:544717,ENSEMBL:ENSMUSG00000063320	MGI:3698433	protein coding gene	RIKEN cDNA 1190007I07 gene
10	gene	82.62982	82.65080	positive	MGI_C57BL6J_108247	Tdg	NCBI_Gene:21665,ENSEMBL:ENSMUSG00000034674	MGI:108247	protein coding gene	thymine DNA glycosylase
10	gene	82.65043	82.69412	negative	MGI_C57BL6J_1922032	Glt8d2	NCBI_Gene:74782,ENSEMBL:ENSMUSG00000020251	MGI:1922032	protein coding gene	glycosyltransferase 8 domain containing 2
10	gene	82.69616	82.79587	positive	MGI_C57BL6J_1915183	Hcfc2	NCBI_Gene:67933,ENSEMBL:ENSMUSG00000020246	MGI:1915183	protein coding gene	host cell factor C2
10	gene	82.74870	82.76414	negative	MGI_C57BL6J_97317	Nfyb	NCBI_Gene:18045,ENSEMBL:ENSMUSG00000020248	MGI:97317	protein coding gene	nuclear transcription factor-Y beta
10	pseudogene	82.76974	82.76990	negative	MGI_C57BL6J_6096583	Gm47560	ENSEMBL:ENSMUSG00000112107	MGI:6096583	pseudogene	predicted gene, 47560
10	gene	82.77132	82.77778	positive	MGI_C57BL6J_6096584	Gm47561	ENSEMBL:ENSMUSG00000112286	MGI:6096584	lncRNA gene	predicted gene, 47561
10	gene	82.81212	82.82424	positive	MGI_C57BL6J_1917253	1700028I16Rik	NCBI_Gene:70003,ENSEMBL:ENSMUSG00000056821	MGI:1917253	lncRNA gene	RIKEN cDNA 1700028I16 gene
10	gene	82.83395	82.89772	positive	MGI_C57BL6J_1354175	Txnrd1	NCBI_Gene:50493,ENSEMBL:ENSMUSG00000020250	MGI:1354175	protein coding gene	thioredoxin reductase 1
10	gene	82.84534	82.85921	negative	MGI_C57BL6J_5621445	Gm38560	NCBI_Gene:102641476,ENSEMBL:ENSMUSG00000112375	MGI:5621445	lncRNA gene	predicted gene, 38560
10	gene	82.85125	82.85265	negative	MGI_C57BL6J_6095792	Gm47073	ENSEMBL:ENSMUSG00000112889	MGI:6095792	unclassified gene	predicted gene, 47073
10	gene	82.86663	82.86793	positive	MGI_C57BL6J_1913591	Eid3	NCBI_Gene:66341,ENSEMBL:ENSMUSG00000109864	MGI:1913591	protein coding gene	EP300 interacting inhibitor of differentiation 3
10	gene	82.89138	82.89502	positive	MGI_C57BL6J_2442548	9130221J17Rik	NA	NA	unclassified gene	RIKEN cDNA 9130221J17 gene
10	gene	82.92700	82.93464	negative	MGI_C57BL6J_5592940	Gm33781	NCBI_Gene:102636812	MGI:5592940	lncRNA gene	predicted gene, 33781
10	pseudogene	82.95433	82.95508	positive	MGI_C57BL6J_3648850	Gm4799	NCBI_Gene:216185,ENSEMBL:ENSMUSG00000071151	MGI:3648850	pseudogene	predicted gene 4799
10	gene	82.98538	83.19590	positive	MGI_C57BL6J_1927166	Chst11	NCBI_Gene:58250,ENSEMBL:ENSMUSG00000034612	MGI:1927166	protein coding gene	carbohydrate sulfotransferase 11
10	gene	83.02776	83.03169	negative	MGI_C57BL6J_3641797	Gm10773	ENSEMBL:ENSMUSG00000112084	MGI:3641797	protein coding gene	predicted gene 10773
10	gene	83.13915	83.14204	negative	MGI_C57BL6J_1916665	1700025N21Rik	ENSEMBL:ENSMUSG00000090200	MGI:1916665	lncRNA gene	RIKEN cDNA 1700025N21 gene
10	gene	83.15802	83.15813	negative	MGI_C57BL6J_5452899	Gm23122	ENSEMBL:ENSMUSG00000088270	MGI:5452899	snRNA gene	predicted gene, 23122
10	gene	83.23085	83.33833	negative	MGI_C57BL6J_2442940	Slc41a2	NCBI_Gene:338365,ENSEMBL:ENSMUSG00000034591	MGI:2442940	protein coding gene	solute carrier family 41, member 2
10	pseudogene	83.33272	83.33336	positive	MGI_C57BL6J_6095950	Gm47170	ENSEMBL:ENSMUSG00000112577	MGI:6095950	pseudogene	predicted gene, 47170
10	gene	83.33870	83.33963	positive	MGI_C57BL6J_5623607	Gm40722	NCBI_Gene:105245243	MGI:5623607	lncRNA gene	predicted gene, 40722
10	gene	83.34395	83.35139	positive	MGI_C57BL6J_5623608	Gm40723	NCBI_Gene:105245244,ENSEMBL:ENSMUSG00000112134	MGI:5623608	lncRNA gene	predicted gene, 40723
10	gene	83.36022	83.48851	positive	MGI_C57BL6J_106381	D10Wsu102e	NCBI_Gene:28109,ENSEMBL:ENSMUSG00000020255	MGI:106381	protein coding gene	DNA segment, Chr 10, Wayne State University 102, expressed
10	pseudogene	83.47800	83.48125	negative	MGI_C57BL6J_3648990	Gm8270	NCBI_Gene:102636894	MGI:3648990	pseudogene	predicted gene 8270
10	gene	83.48745	83.53415	negative	MGI_C57BL6J_2444680	Aldh1l2	NCBI_Gene:216188,ENSEMBL:ENSMUSG00000020256	MGI:2444680	protein coding gene	aldehyde dehydrogenase 1 family, member L2
10	gene	83.54375	83.59647	positive	MGI_C57BL6J_2441787	Washc4	NCBI_Gene:319277,ENSEMBL:ENSMUSG00000034560	MGI:2441787	protein coding gene	WASH complex subunit 4

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
10	gene	84.03656	84.10088	negative	MGI_C57BL6J_5593343	Gm34184	NCBI_Gene:102637349,ENSEMBL:ENSMUSG00000111049	MGI:5593343	lncRNA gene	predicted gene, 34184
10	gene	84.08463	84.09625	positive	MGI_C57BL6J_5593272	Gm34113	NCBI_Gene:102637247,ENSEMBL:ENSMUSG00000111524	MGI:5593272	lncRNA gene	predicted gene, 34113
10	gene	84.10438	84.11042	negative	MGI_C57BL6J_5623612	Gm40727	NCBI_Gene:105245248	MGI:5623612	lncRNA gene	predicted gene, 40727
10	gene	84.19182	84.22206	negative	MGI_C57BL6J_6096082	Gm47253	ENSEMBL:ENSMUSG00000111062	MGI:6096082	lncRNA gene	predicted gene, 47253
10	pseudogene	84.30887	84.30936	positive	MGI_C57BL6J_3643901	Gm5425	NCBI_Gene:432482,ENSEMBL:ENSMUSG00000111875	MGI:3643901	pseudogene	predicted gene 5425
10	gene	84.31732	84.33575	negative	MGI_C57BL6J_5825838	Gm46201	NCBI_Gene:108167783	MGI:5825838	lncRNA gene	predicted gene, 46201
10	gene	84.37090	84.44060	negative	MGI_C57BL6J_1925226	Nuak1	NCBI_Gene:77976,ENSEMBL:ENSMUSG00000020032	MGI:1925226	protein coding gene	NUAK family, SNF1-like kinase, 1
10	gene	84.44083	84.46701	positive	MGI_C57BL6J_6097239	Gm47962	ENSEMBL:ENSMUSG00000111583	MGI:6097239	lncRNA gene	predicted gene, 47962
10	gene	84.48829	84.49768	positive	MGI_C57BL6J_1923054	4930463O16Rik	NCBI_Gene:75804,ENSEMBL:ENSMUSG00000020033	MGI:1923054	lncRNA gene	RIKEN cDNA 4930463O16 gene
10	gene	84.49887	84.49963	positive	MGI_C57BL6J_1921541	1700092E16Rik	ENSEMBL:ENSMUSG00000111487	MGI:1921541	unclassified non-coding RNA gene	RIKEN cDNA 1700092E16 gene
10	gene	84.50004	84.51710	negative	MGI_C57BL6J_5593564	Gm34405	NCBI_Gene:102637645	MGI:5593564	lncRNA gene	predicted gene, 34405
10	pseudogene	84.50203	84.50256	negative	MGI_C57BL6J_5010436	Gm18251	NCBI_Gene:100416788,ENSEMBL:ENSMUSG00000111478	MGI:5010436	pseudogene	predicted gene, 18251
10	gene	84.51805	84.52327	positive	MGI_C57BL6J_3045388	E230014E18Rik	ENSEMBL:ENSMUSG00000111514	MGI:3045388	lncRNA gene	RIKEN cDNA E230014E18 gene
10	gene	84.52630	84.53406	negative	MGI_C57BL6J_2444926	Ckap4	NCBI_Gene:216197,ENSEMBL:ENSMUSG00000046841	MGI:2444926	protein coding gene	cytoskeleton-associated protein 4
10	gene	84.54742	84.55334	negative	MGI_C57BL6J_3045387	Platr7	NCBI_Gene:442847,ENSEMBL:ENSMUSG00000097076	MGI:3045387	lncRNA gene	pluripotency associated transcript 7
10	gene	84.57232	84.57507	positive	MGI_C57BL6J_5593674	Gm34515	NCBI_Gene:102637793	MGI:5593674	lncRNA gene	predicted gene, 34515
10	gene	84.57663	84.61436	positive	MGI_C57BL6J_2444679	Tcp11l2	NCBI_Gene:216198,ENSEMBL:ENSMUSG00000020034	MGI:2444679	protein coding gene	t-complex 11 (mouse) like 2
10	gene	84.61472	84.61481	positive	MGI_C57BL6J_5455434	Gm25657	ENSEMBL:ENSMUSG00000089096	MGI:5455434	snRNA gene	predicted gene, 25657
10	gene	84.61834	84.62753	negative	MGI_C57BL6J_4936883	Gm17249	NCBI_Gene:102637873,ENSEMBL:ENSMUSG00000097309	MGI:4936883	lncRNA gene	predicted gene, 17249
10	gene	84.62229	84.72718	positive	MGI_C57BL6J_1917678	Polr3b	NCBI_Gene:70428,ENSEMBL:ENSMUSG00000034453	MGI:1917678	protein coding gene	polymerase (RNA) III (DNA directed) polypeptide B
10	gene	84.75605	84.90654	positive	MGI_C57BL6J_1918387	Rfx4	NCBI_Gene:71137,ENSEMBL:ENSMUSG00000020037	MGI:1918387	protein coding gene	regulatory factor X, 4 (influences HLA class II expression)
10	gene	84.79795	84.86329	negative	MGI_C57BL6J_5623613	Gm40728	NCBI_Gene:105245249	MGI:5623613	lncRNA gene	predicted gene, 40728
10	gene	84.81109	84.81118	negative	MGI_C57BL6J_5454003	Gm24226	ENSEMBL:ENSMUSG00000089451	MGI:5454003	snRNA gene	predicted gene, 24226
10	gene	84.91725	85.01834	positive	MGI_C57BL6J_2682307	Ric8b	NCBI_Gene:237422,ENSEMBL:ENSMUSG00000035620	MGI:2682307	protein coding gene	RIC8 guanine nucleotide exchange factor B
10	gene	84.98771	85.00365	negative	MGI_C57BL6J_5593792	Gm34633	NCBI_Gene:102637948	MGI:5593792	lncRNA gene	predicted gene, 34633
10	gene	85.09629	85.10250	negative	MGI_C57BL6J_1338765	Fhl4	NCBI_Gene:14202,ENSEMBL:ENSMUSG00000050035	MGI:1338765	protein coding gene	four and a half LIM domains 4
10	gene	85.10263	85.12062	positive	MGI_C57BL6J_2143652	Tmem263	NCBI_Gene:103266,ENSEMBL:ENSMUSG00000060935	MGI:2143652	protein coding gene	transmembrane protein 263
10	gene	85.11943	85.12807	negative	MGI_C57BL6J_1921488	Mterf2	NCBI_Gene:74238,ENSEMBL:ENSMUSG00000049038	MGI:1921488	protein coding gene	mitochondrial transcription termination factor 2
10	gene	85.13170	85.18506	negative	MGI_C57BL6J_1270841	Cry1	NCBI_Gene:12952,ENSEMBL:ENSMUSG00000020038	MGI:1270841	protein coding gene	cryptochrome 1 (photolyase-like)
10	gene	85.22094	85.26639	negative	MGI_C57BL6J_5621460	Gm38575	ENSEMBL:ENSMUSG00000111752	MGI:5621460	lncRNA gene	predicted gene, 38575
10	gene	85.28423	85.28433	negative	MGI_C57BL6J_5530774	Gm27392	ENSEMBL:ENSMUSG00000098852	MGI:5530774	miRNA gene	predicted gene, 27392
10	pseudogene	85.31347	85.31444	positive	MGI_C57BL6J_3647964	Gm8394	NCBI_Gene:666974,ENSEMBL:ENSMUSG00000050490	MGI:3647964	pseudogene	predicted gene 8394
10	gene	85.33269	85.34757	negative	MGI_C57BL6J_5593871	Gm34712	NCBI_Gene:102638057	MGI:5593871	lncRNA gene	predicted gene, 34712
10	gene	85.33390	85.33400	positive	MGI_C57BL6J_5455058	Gm25281	ENSEMBL:ENSMUSG00000087895	MGI:5455058	miRNA gene	predicted gene, 25281
10	gene	85.33901	85.33995	positive	MGI_C57BL6J_5623615	Gm40730	NCBI_Gene:105245251	MGI:5623615	lncRNA gene	predicted gene, 40730
10	gene	85.38677	85.66029	positive	MGI_C57BL6J_1921257	Btbd11	NCBI_Gene:74007,ENSEMBL:ENSMUSG00000020042	MGI:1921257	protein coding gene	BTB (POZ) domain containing 11
10	gene	85.57888	85.58399	negative	MGI_C57BL6J_5623616	Gm40731	NCBI_Gene:105245252	MGI:5623616	lncRNA gene	predicted gene, 40731

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
10	gene	86.04875	86.49903	negative	MGI_C57BL6J_1351334	Syn3	NCBI_Gene:27204,ENSEMBL:ENSMUSG00000059602	MGI:1351334	protein coding gene	synapsin III
10	gene	86.09585	86.11359	positive	MGI_C57BL6J_1925420	4930486F22Rik	NCBI_Gene:78170,ENSEMBL:ENSMUSG00000112493	MGI:1925420	lncRNA gene	RIKEN cDNA 4930486F22 gene
10	gene	86.12583	86.12985	positive	MGI_C57BL6J_3801993	Gm15990	ENSEMBL:ENSMUSG00000087256	MGI:3801993	lncRNA gene	predicted gene 15990
10	gene	86.15613	86.18954	positive	MGI_C57BL6J_5594795	Gm35636	NCBI_Gene:102639289	MGI:5594795	lncRNA gene	predicted gene, 35636
10	gene	86.30037	86.34951	positive	MGI_C57BL6J_98754	Timp3	NCBI_Gene:21859,ENSEMBL:ENSMUSG00000020044	MGI:98754	protein coding gene	tissue inhibitor of metalloproteinase 3
10	gene	86.32703	86.32930	positive	MGI_C57BL6J_2443425	B930095M22Rik	NA	NA	unclassified gene	RIKEN cDNA B930095M22 gene
10	gene	86.52630	86.54187	negative	MGI_C57BL6J_3646339	Gm6729	NCBI_Gene:627035,ENSEMBL:ENSMUSG00000090816,ENSEMBL:ENSMUSG00000112586	MGI:3646339	protein coding gene	predicted gene 6729
10	pseudogene	86.55081	86.55266	negative	MGI_C57BL6J_3779991	Gm9583	NCBI_Gene:672902,ENSEMBL:ENSMUSG00000112893	MGI:3779991	pseudogene	predicted gene 9583
10	pseudogene	86.55495	86.55618	negative	MGI_C57BL6J_5434382	Gm21027	NCBI_Gene:100534314,ENSEMBL:ENSMUSG00000112115	MGI:5434382	pseudogene	predicted gene, 21027
10	pseudogene	86.56993	86.57168	positive	MGI_C57BL6J_6097960	Gm48448	ENSEMBL:ENSMUSG00000112207	MGI:6097960	pseudogene	predicted gene, 48448
10	pseudogene	86.57176	86.57297	positive	MGI_C57BL6J_6097963	Gm48450	ENSEMBL:ENSMUSG00000112579	MGI:6097963	pseudogene	predicted gene, 48450
10	pseudogene	86.57304	86.57425	positive	MGI_C57BL6J_6097964	Gm48451	ENSEMBL:ENSMUSG00000112562	MGI:6097964	pseudogene	predicted gene, 48451
10	pseudogene	86.57432	86.57553	positive	MGI_C57BL6J_6097968	Gm48454	ENSEMBL:ENSMUSG00000112325	MGI:6097968	pseudogene	predicted gene, 48454
10	pseudogene	86.57562	86.57585	positive	MGI_C57BL6J_6097974	Gm48460	ENSEMBL:ENSMUSG00000112268	MGI:6097974	pseudogene	predicted gene, 48460
10	pseudogene	86.59235	86.59366	positive	MGI_C57BL6J_5825828	Gm46191	NCBI_Gene:108167772,ENSEMBL:ENSMUSG00000112735	MGI:5825828	pseudogene	predicted gene, 46191
10	pseudogene	86.60092	86.60144	positive	MGI_C57BL6J_6097975	Gm48461	ENSEMBL:ENSMUSG00000112010	MGI:6097975	pseudogene	predicted gene, 48461
10	pseudogene	86.60157	86.60174	positive	MGI_C57BL6J_6097978	Gm48463	ENSEMBL:ENSMUSG00000112638	MGI:6097978	pseudogene	predicted gene, 48463
10	pseudogene	86.60178	86.60293	positive	MGI_C57BL6J_6097979	Gm48464	ENSEMBL:ENSMUSG00000112834	MGI:6097979	pseudogene	predicted gene, 48464
10	pseudogene	86.60301	86.60420	positive	MGI_C57BL6J_6097980	Gm48465	ENSEMBL:ENSMUSG00000111998	MGI:6097980	pseudogene	predicted gene, 48465
10	pseudogene	86.60429	86.60476	positive	MGI_C57BL6J_6097981	Gm48466	ENSEMBL:ENSMUSG00000112078	MGI:6097981	pseudogene	predicted gene, 48466
10	pseudogene	86.62065	86.62093	negative	MGI_C57BL6J_6097988	Gm48473	ENSEMBL:ENSMUSG00000112565	MGI:6097988	pseudogene	predicted gene, 48473
10	pseudogene	86.62098	86.62213	negative	MGI_C57BL6J_6097989	Gm48474	ENSEMBL:ENSMUSG00000112699	MGI:6097989	pseudogene	predicted gene, 48474
10	pseudogene	86.62226	86.62400	negative	MGI_C57BL6J_6097990	Gm48475	ENSEMBL:ENSMUSG00000112359	MGI:6097990	pseudogene	predicted gene, 48475
10	pseudogene	86.63714	86.63839	positive	MGI_C57BL6J_5012174	Gm19989	NCBI_Gene:100534315,ENSEMBL:ENSMUSG00000112282	MGI:5012174	pseudogene	predicted gene, 19989
10	pseudogene	86.64068	86.64253	positive	MGI_C57BL6J_5011061	Gm18876	NCBI_Gene:100417881,ENSEMBL:ENSMUSG00000112098	MGI:5011061	pseudogene	predicted gene, 18876
10	gene	86.65543	86.67102	positive	MGI_C57BL6J_3646116	Gm5174	NCBI_Gene:382395,ENSEMBL:ENSMUSG00000090308	MGI:3646116	protein coding gene	predicted gene 5174
10	gene	86.65740	86.67102	positive	MGI_C57BL6J_6098005	Gm48485	ENSEMBL:ENSMUSG00000112666	MGI:6098005	lncRNA gene	predicted gene, 48485
10	pseudogene	86.68552	86.69481	positive	MGI_C57BL6J_1913513	1810014B01Rik	NCBI_Gene:66263,ENSEMBL:ENSMUSG00000097412	MGI:1913513	pseudogene	RIKEN cDNA 1810014B01 gene
10	gene	86.69021	86.70551	negative	MGI_C57BL6J_98817	Hsp90b1	NCBI_Gene:22027,ENSEMBL:ENSMUSG00000020048	MGI:98817	protein coding gene	heat shock protein 90, beta (Grp94), member 1
10	gene	86.69212	86.69309	negative	MGI_C57BL6J_3708098	Gm15344	ENSEMBL:ENSMUSG00000084899	MGI:3708098	lncRNA gene	predicted gene 15344
10	gene	86.70532	86.70545	negative	MGI_C57BL6J_5455522	Gm25745	ENSEMBL:ENSMUSG00000092686	MGI:5455522	miRNA gene	predicted gene, 25745
10	gene	86.70562	86.77684	positive	MGI_C57BL6J_2387653	Ttc41	NCBI_Gene:103220,ENSEMBL:ENSMUSG00000044937	MGI:2387653	protein coding gene	tetratricopeptide repeat domain 41
10	pseudogene	86.73175	86.73239	negative	MGI_C57BL6J_101929	Fabp3-ps1	NCBI_Gene:14074,ENSEMBL:ENSMUSG00000056366	MGI:101929	pseudogene	fatty acid binding protein 3, muscle and heart, pseudogene 1
10	gene	86.76397	86.83397	positive	MGI_C57BL6J_6121566	Gm49358	ENSEMBL:ENSMUSG00000112743	MGI:6121566	protein coding gene	predicted gene, 49358
10	gene	86.77899	86.83839	positive	MGI_C57BL6J_3513266	Nt5dc3	NCBI_Gene:103466,ENSEMBL:ENSMUSG00000054027	MGI:3513266	protein coding gene	5’-nucleotidase domain containing 3
10	gene	86.83909	86.87495	positive	MGI_C57BL6J_3826557	Gm16268	ENSEMBL:ENSMUSG00000089959	MGI:3826557	lncRNA gene	predicted gene 16268
10	gene	86.84120	87.00803	negative	MGI_C57BL6J_2178743	Stab2	NCBI_Gene:192188,ENSEMBL:ENSMUSG00000035459	MGI:2178743	protein coding gene	stabilin 2
10	gene	86.90876	86.91001	positive	MGI_C57BL6J_3809105	Gm16280	ENSEMBL:ENSMUSG00000089881	MGI:3809105	lncRNA gene	predicted gene 16280
10	pseudogene	86.90948	86.91272	positive	MGI_C57BL6J_3841260	Gm16270	NCBI_Gene:100416105,ENSEMBL:ENSMUSG00000089775	MGI:3841260	pseudogene	predicted gene 16270
10	gene	86.91350	86.91468	positive	MGI_C57BL6J_1890547	Tex18	NA	NA	unclassified non-coding RNA gene	testis expressed gene 18
10	gene	86.97222	87.02801	positive	MGI_C57BL6J_3826610	Gm16271	ENSEMBL:ENSMUSG00000089656	MGI:3826610	lncRNA gene	predicted gene 16271
10	pseudogene	86.99996	87.00073	positive	MGI_C57BL6J_3826558	Gm16269	NCBI_Gene:108167826,ENSEMBL:ENSMUSG00000089666	MGI:3826558	pseudogene	predicted gene 16269
10	gene	87.01893	87.05883	negative	MGI_C57BL6J_5595966	Gm36807	NCBI_Gene:102640833	MGI:5595966	protein coding gene	predicted gene, 36807
10	gene	87.05805	87.23060	positive	MGI_C57BL6J_1923890	1700113H08Rik	NCBI_Gene:76640,ENSEMBL:ENSMUSG00000047129	MGI:1923890	protein coding gene	RIKEN cDNA 1700113H08 gene
10	gene	87.23076	87.29756	positive	MGI_C57BL6J_1922532	4930555G07Rik	ENSEMBL:ENSMUSG00000112213	MGI:1922532	lncRNA gene	RIKEN cDNA 4930555G07 gene
10	gene	87.28949	87.29183	positive	MGI_C57BL6J_3641850	Gm10764	ENSEMBL:ENSMUSG00000103862	MGI:3641850	unclassified gene	predicted gene 10764
10	gene	87.36404	87.36415	negative	MGI_C57BL6J_5452968	Gm23191	ENSEMBL:ENSMUSG00000096692	MGI:5452968	snRNA gene	predicted gene, 23191
10	gene	87.49082	87.49366	negative	MGI_C57BL6J_96919	Ascl1	NCBI_Gene:17172,ENSEMBL:ENSMUSG00000020052	MGI:96919	protein coding gene	achaete-scute family bHLH transcription factor 1
10	gene	87.50283	87.50862	negative	MGI_C57BL6J_5589074	Gm29915	NCBI_Gene:102631620	MGI:5589074	lncRNA gene	predicted gene, 29915
10	pseudogene	87.50786	87.50848	positive	MGI_C57BL6J_6097476	Gm48120	ENSEMBL:ENSMUSG00000112460	MGI:6097476	pseudogene	predicted gene, 48120
10	gene	87.52179	87.58414	positive	MGI_C57BL6J_97473	Pah	NCBI_Gene:18478,ENSEMBL:ENSMUSG00000020051	MGI:97473	protein coding gene	phenylalanine hydroxylase
10	gene	87.57144	87.57175	positive	MGI_C57BL6J_1925634	2210420L05Rik	NA	NA	unclassified gene	RIKEN cDNA 2210420L05 gene
10	pseudogene	87.68858	87.68903	positive	MGI_C57BL6J_6097580	Gm48195	ENSEMBL:ENSMUSG00000112536	MGI:6097580	pseudogene	predicted gene, 48195
10	pseudogene	87.75914	87.75957	positive	MGI_C57BL6J_5012191	Gm20006	NCBI_Gene:100504000	MGI:5012191	pseudogene	predicted gene, 20006
10	gene	87.77724	87.79837	negative	MGI_C57BL6J_5589232	Gm30073	NCBI_Gene:102631839	MGI:5589232	lncRNA gene	predicted gene, 30073
10	gene	87.82638	87.86472	negative	MGI_C57BL6J_3841250	Igf1os	NCBI_Gene:627270,ENSEMBL:ENSMUSG00000058934	MGI:3841250	antisense lncRNA gene	insulin-like growth factor 1, opposite strand
10	gene	87.82989	87.82996	negative	MGI_C57BL6J_4413968	n-TKctt21	NCBI_Gene:102467349	MGI:4413968	tRNA gene	nuclear encoded tRNA lysine 21 (anticodon TTT)
10	gene	87.85827	87.93705	positive	MGI_C57BL6J_96432	Igf1	NCBI_Gene:16000,ENSEMBL:ENSMUSG00000020053	MGI:96432	protein coding gene	insulin-like growth factor 1
10	pseudogene	87.96667	87.96802	positive	MGI_C57BL6J_98879	Tyms-ps	NCBI_Gene:22172,ENSEMBL:ENSMUSG00000112222	MGI:98879	pseudogene	thymidylate synthase, pseudogene
10	gene	87.98046	87.98422	positive	MGI_C57BL6J_6097752	Gm48306	ENSEMBL:ENSMUSG00000112183	MGI:6097752	lncRNA gene	predicted gene, 48306
10	gene	88.03822	88.03968	positive	MGI_C57BL6J_6097754	Gm48307	ENSEMBL:ENSMUSG00000112235	MGI:6097754	unclassified gene	predicted gene, 48307
10	gene	88.03822	88.03968	negative	MGI_C57BL6J_3641951	Gm10763	NA	NA	unclassified gene	predicted gene 10763
10	gene	88.06807	88.09035	negative	MGI_C57BL6J_5589392	Gm30233	NCBI_Gene:102632060	MGI:5589392	lncRNA gene	predicted gene, 30233
10	gene	88.08820	88.08982	positive	MGI_C57BL6J_6097756	Gm48308	ENSEMBL:ENSMUSG00000112932	MGI:6097756	unclassified gene	predicted gene, 48308
10	gene	88.09107	88.09238	positive	MGI_C57BL6J_97629	Pmch	NCBI_Gene:110312,ENSEMBL:ENSMUSG00000035383	MGI:97629	protein coding gene	pro-melanin-concentrating hormone
10	gene	88.09140	88.14695	negative	MGI_C57BL6J_1922567	Parpbp	NCBI_Gene:75317,ENSEMBL:ENSMUSG00000035365	MGI:1922567	protein coding gene	PARP1 binding protein
10	gene	88.13438	88.13758	negative	MGI_C57BL6J_3647484	Gm6653	NCBI_Gene:626115,ENSEMBL:ENSMUSG00000112026	MGI:3647484	unclassified gene	predicted gene 6653
10	gene	88.13592	88.13753	positive	MGI_C57BL6J_1918118	4921515L22Rik	ENSEMBL:ENSMUSG00000112406	MGI:1918118	lncRNA gene	RIKEN cDNA 4921515L22 gene
10	gene	88.14697	88.17839	positive	MGI_C57BL6J_1919964	Nup37	NCBI_Gene:69736,ENSEMBL:ENSMUSG00000035351	MGI:1919964	protein coding gene	nucleoporin 37
10	gene	88.16496	88.16507	negative	MGI_C57BL6J_5456134	Gm26357	ENSEMBL:ENSMUSG00000088843	MGI:5456134	snRNA gene	predicted gene, 26357
10	gene	88.20109	88.26082	positive	MGI_C57BL6J_1914532	Washc3	NCBI_Gene:67282,ENSEMBL:ENSMUSG00000020056	MGI:1914532	protein coding gene	WASH complex subunit 3
10	pseudogene	88.24742	88.24863	positive	MGI_C57BL6J_3648865	Gm8415	NCBI_Gene:667000	MGI:3648865	pseudogene	predicted gene 8415

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
10	gene	88.45274	88.50407	negative	MGI_C57BL6J_2384841	Chpt1	NCBI_Gene:212862,ENSEMBL:ENSMUSG00000060002	MGI:2384841	protein coding gene	choline phosphotransferase 1
10	gene	88.45957	88.47324	positive	MGI_C57BL6J_109542	Sycp3	NCBI_Gene:20962,ENSEMBL:ENSMUSG00000020059	MGI:109542	protein coding gene	synaptonemal complex protein 3
10	gene	88.51828	88.60524	negative	MGI_C57BL6J_1336213	Mybpc1	NCBI_Gene:109272,ENSEMBL:ENSMUSG00000020061	MGI:1336213	protein coding gene	myosin binding protein C, slow-type
10	gene	88.60247	88.60534	positive	MGI_C57BL6J_6098429	Gm48752	ENSEMBL:ENSMUSG00000112841	MGI:6098429	unclassified gene	predicted gene, 48752
10	pseudogene	88.64136	88.64221	positive	MGI_C57BL6J_3643053	Gm8435	NCBI_Gene:667046,ENSEMBL:ENSMUSG00000112231	MGI:3643053	pseudogene	predicted gene 8435
10	pseudogene	88.65011	88.65823	negative	MGI_C57BL6J_6097458	Gm48106	ENSEMBL:ENSMUSG00000112428	MGI:6097458	pseudogene	predicted gene, 48106
10	pseudogene	88.67050	88.67127	negative	MGI_C57BL6J_6097461	Gm48108	ENSEMBL:ENSMUSG00000112869	MGI:6097461	pseudogene	predicted gene, 48108
10	pseudogene	88.67302	88.67339	positive	MGI_C57BL6J_5588966	Gm29807	NCBI_Gene:101056238,ENSEMBL:ENSMUSG00000112885	MGI:5588966	pseudogene	predicted gene, 29807
10	gene	88.67477	88.68502	negative	MGI_C57BL6J_1341168	Spic	NCBI_Gene:20728,ENSEMBL:ENSMUSG00000004359	MGI:1341168	protein coding gene	Spi-C transcription factor (Spi-1/PU.1 related)
10	pseudogene	88.69101	88.70511	positive	MGI_C57BL6J_5825829	Gm46192	NCBI_Gene:108167773,ENSEMBL:ENSMUSG00000111919	MGI:5825829	pseudogene	predicted gene, 46192
10	gene	88.71001	88.71013	negative	MGI_C57BL6J_4421927	n-R5s79	ENSEMBL:ENSMUSG00000065005	MGI:4421927	rRNA gene	nuclear encoded rRNA 5S 79
10	pseudogene	88.71565	88.71609	negative	MGI_C57BL6J_6097511	Gm48144	ENSEMBL:ENSMUSG00000112467	MGI:6097511	pseudogene	predicted gene, 48144
10	pseudogene	88.72954	88.73110	negative	MGI_C57BL6J_3643371	Gm4925	NCBI_Gene:237433,ENSEMBL:ENSMUSG00000069540	MGI:3643371	pseudogene	predicted gene 4925
10	gene	88.73086	88.74409	positive	MGI_C57BL6J_99436	Arl1	NCBI_Gene:104303,ENSEMBL:ENSMUSG00000060904	MGI:99436	protein coding gene	ADP-ribosylation factor-like 1
10	gene	88.74661	88.82681	negative	MGI_C57BL6J_1917933	Utp20	NCBI_Gene:70683,ENSEMBL:ENSMUSG00000004356	MGI:1917933	protein coding gene	UTP20 small subunit processome component
10	gene	88.87460	88.87580	negative	MGI_C57BL6J_1924528	9430024C03Rik	NA	NA	unclassified gene	RIKEN cDNA 9430024C03 gene
10	gene	88.88599	88.92951	positive	MGI_C57BL6J_2384916	Slc5a8	NCBI_Gene:216225,ENSEMBL:ENSMUSG00000020062	MGI:2384916	protein coding gene	solute carrier family 5 (iodide transporter), member 8
10	gene	88.94893	89.34508	negative	MGI_C57BL6J_2443344	Ano4	NCBI_Gene:320091,ENSEMBL:ENSMUSG00000035189	MGI:2443344	protein coding gene	anoctamin 4
10	gene	89.25713	89.25914	positive	MGI_C57BL6J_5589928	Gm30769	NCBI_Gene:102632785	MGI:5589928	lncRNA gene	predicted gene, 30769
10	gene	89.40882	89.44437	negative	MGI_C57BL6J_1918780	Gas2l3	NCBI_Gene:237436,ENSEMBL:ENSMUSG00000074802	MGI:1918780	protein coding gene	growth arrest-specific 2 like 3
10	gene	89.45423	89.53365	negative	MGI_C57BL6J_1352464	Nr1h4	NCBI_Gene:20186,ENSEMBL:ENSMUSG00000047638	MGI:1352464	protein coding gene	nuclear receptor subfamily 1, group H, member 4
10	pseudogene	89.55508	89.55572	negative	MGI_C57BL6J_6097428	Gm48087	ENSEMBL:ENSMUSG00000112272	MGI:6097428	pseudogene	predicted gene, 48087
10	gene	89.57402	89.62125	negative	MGI_C57BL6J_3039629	Slc17a8	NCBI_Gene:216227,ENSEMBL:ENSMUSG00000019935	MGI:3039629	protein coding gene	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8
10	gene	89.63872	89.68629	negative	MGI_C57BL6J_1289172	Scyl2	NCBI_Gene:213326,ENSEMBL:ENSMUSG00000069539	MGI:1289172	protein coding gene	SCY1-like 2 (S. cerevisiae)
10	gene	89.68636	89.70087	positive	MGI_C57BL6J_1916252	1500026H17Rik	NCBI_Gene:69002,ENSEMBL:ENSMUSG00000097383	MGI:1916252	lncRNA gene	RIKEN cDNA 1500026H17 gene
10	gene	89.71197	89.73231	negative	MGI_C57BL6J_1914269	Actr6	NCBI_Gene:67019,ENSEMBL:ENSMUSG00000019948	MGI:1914269	protein coding gene	ARP6 actin-related protein 6
10	gene	89.73678	89.74141	negative	MGI_C57BL6J_5590122	Gm30963	NCBI_Gene:102633042	MGI:5590122	lncRNA gene	predicted gene, 30963
10	gene	89.74362	89.74582	negative	MGI_C57BL6J_3642333	E330037I15Rik	NA	NA	unclassified gene	RIKEN cDNA E330037I15 gene
10	gene	89.74499	89.81989	positive	MGI_C57BL6J_2442888	Uhrf1bp1l	NCBI_Gene:75089,ENSEMBL:ENSMUSG00000019951	MGI:2442888	protein coding gene	UHRF1 (ICBP90) binding protein 1-like
10	gene	89.81216	89.81389	positive	MGI_C57BL6J_5590249	Gm31090	NCBI_Gene:102633203	MGI:5590249	lncRNA gene	predicted gene, 31090
10	gene	89.82134	89.82145	negative	MGI_C57BL6J_5455957	Gm26180	ENSEMBL:ENSMUSG00000093967	MGI:5455957	snRNA gene	predicted gene, 26180
10	gene	89.82288	89.82654	positive	MGI_C57BL6J_5825875	Gm46238	NCBI_Gene:108167827	MGI:5825875	protein coding gene	predicted gene, 46238
10	gene	89.87302	90.97330	positive	MGI_C57BL6J_1924781	Anks1b	NCBI_Gene:77531,ENSEMBL:ENSMUSG00000058589	MGI:1924781	protein coding gene	ankyrin repeat and sterile alpha motif domain containing 1B
10	gene	89.87827	89.87860	positive	MGI_C57BL6J_3782360	Gm4184	NCBI_Gene:100043039	MGI:3782360	protein coding gene	predicted gene 4184
10	pseudogene	90.13298	90.13482	negative	MGI_C57BL6J_3645288	Gm5780	NCBI_Gene:544719,ENSEMBL:ENSMUSG00000112140	MGI:3645288	pseudogene	predicted gene 5780
10	gene	90.42659	90.42806	positive	MGI_C57BL6J_2441893	C230047L17Rik	NA	NA	unclassified gene	RIKEN cDNA C230047L17 gene
10	gene	90.45091	90.45100	positive	MGI_C57BL6J_5452379	Gm22602	ENSEMBL:ENSMUSG00000088221	MGI:5452379	snRNA gene	predicted gene, 22602
10	gene	90.59763	90.59916	positive	MGI_C57BL6J_1920193	2900018E21Rik	NA	NA	unclassified gene	RIKEN cDNA 2900018E21 gene
10	gene	90.72896	90.73633	positive	MGI_C57BL6J_6096636	Gm47591	ENSEMBL:ENSMUSG00000112153	MGI:6096636	lncRNA gene	predicted gene, 47591
10	pseudogene	90.74999	90.75069	negative	MGI_C57BL6J_5010855	Gm18670	NCBI_Gene:100417532,ENSEMBL:ENSMUSG00000111909	MGI:5010855	pseudogene	predicted gene, 18670
10	pseudogene	90.75087	90.75107	negative	MGI_C57BL6J_6096633	Gm47589	ENSEMBL:ENSMUSG00000112507	MGI:6096633	pseudogene	predicted gene, 47589
10	gene	90.81308	90.81439	positive	MGI_C57BL6J_6096638	Gm47592	ENSEMBL:ENSMUSG00000112015	MGI:6096638	unclassified gene	predicted gene, 47592
10	gene	90.85110	90.85407	positive	MGI_C57BL6J_6096634	Gm47590	ENSEMBL:ENSMUSG00000112601	MGI:6096634	unclassified gene	predicted gene, 47590
10	gene	90.98931	91.08277	negative	MGI_C57BL6J_1306796	Apaf1	NCBI_Gene:11783,ENSEMBL:ENSMUSG00000019979	MGI:1306796	protein coding gene	apoptotic peptidase activating factor 1
10	gene	91.00574	91.00584	positive	MGI_C57BL6J_5455167	Gm25390	ENSEMBL:ENSMUSG00000087966	MGI:5455167	snRNA gene	predicted gene, 25390
10	gene	91.08269	91.10261	positive	MGI_C57BL6J_1914704	Ikbip	NCBI_Gene:67454,ENSEMBL:ENSMUSG00000019975	MGI:1914704	protein coding gene	IKBKB interacting protein
10	gene	91.11378	91.11425	negative	MGI_C57BL6J_1925088	A930036M01Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA A930036M01 gene
10	gene	91.11657	91.12406	negative	MGI_C57BL6J_1353498	Slc25a3	NCBI_Gene:18674,ENSEMBL:ENSMUSG00000061904	MGI:1353498	protein coding gene	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
10	gene	91.11829	91.11854	negative	MGI_C57BL6J_5453896	Gm24119	ENSEMBL:ENSMUSG00000077167	MGI:5453896	snoRNA gene	predicted gene, 24119
10	gene	91.14757	91.18172	negative	MGI_C57BL6J_106920	Tmpo	NCBI_Gene:21917,ENSEMBL:ENSMUSG00000019961	MGI:106920	protein coding gene	thymopoietin
10	gene	91.14951	91.15059	positive	MGI_C57BL6J_5477259	Gm26765	ENSEMBL:ENSMUSG00000097664	MGI:5477259	lncRNA gene	predicted gene, 26765
10	gene	91.15008	91.15164	negative	MGI_C57BL6J_1923371	5830485P09Rik	NA	NA	unclassified gene	RIKEN cDNA 5830485P09 gene
10	gene	91.18141	91.18148	negative	MGI_C57BL6J_4414067	n-TWcca2	NCBI_Gene:102467609	MGI:4414067	tRNA gene	nuclear encoded tRNA trytophan 2 (anticodon CCA)
10	gene	91.18210	91.18217	negative	MGI_C57BL6J_4413767	n-TDgtc16	NCBI_Gene:102467266	MGI:4413767	tRNA gene	nuclear encoded tRNA aspartic acid 16 (anticodon GTC)
10	gene	91.20826	91.22064	negative	MGI_C57BL6J_1922441	4930534H03Rik	NCBI_Gene:102633753,ENSEMBL:ENSMUSG00000111544	MGI:1922441	lncRNA gene	RIKEN cDNA 4930534H03 gene
10	pseudogene	91.22819	91.22850	positive	MGI_C57BL6J_6095807	Gm47081	ENSEMBL:ENSMUSG00000110870	MGI:6095807	pseudogene	predicted gene, 47081
10	pseudogene	91.25214	91.25950	negative	MGI_C57BL6J_5010890	Gm18705	NCBI_Gene:100417593,ENSEMBL:ENSMUSG00000110847	MGI:5010890	pseudogene	predicted gene, 18705
10	gene	91.31034	91.31245	positive	MGI_C57BL6J_6095808	Gm47082	ENSEMBL:ENSMUSG00000111525	MGI:6095808	lncRNA gene	predicted gene, 47082
10	gene	91.41060	91.43962	positive	MGI_C57BL6J_5623621	Gm40736	NCBI_Gene:105245258	MGI:5623621	lncRNA gene	predicted gene, 40736
10	pseudogene	91.42335	91.42373	positive	MGI_C57BL6J_6095810	Gm47083	ENSEMBL:ENSMUSG00000111591	MGI:6095810	pseudogene	predicted gene, 47083
10	pseudogene	91.44822	91.44838	negative	MGI_C57BL6J_6095811	Gm47084	ENSEMBL:ENSMUSG00000111051	MGI:6095811	pseudogene	predicted gene, 47084
10	pseudogene	91.64070	91.64089	negative	MGI_C57BL6J_6095821	Gm47091	ENSEMBL:ENSMUSG00000111782	MGI:6095821	pseudogene	predicted gene, 47091
10	gene	91.88859	91.95362	positive	MGI_C57BL6J_5590751	Gm31592	NCBI_Gene:102633867,ENSEMBL:ENSMUSG00000111657	MGI:5590751	lncRNA gene	predicted gene, 31592
10	gene	91.98386	91.98743	positive	MGI_C57BL6J_5590832	Gm31673	NCBI_Gene:102633980	MGI:5590832	lncRNA gene	predicted gene, 31673
10	gene	92.07104	92.16518	negative	MGI_C57BL6J_1099806	Rmst	NCBI_Gene:110333,ENSEMBL:ENSMUSG00000112117	MGI:1099806	lncRNA gene	rhabdomyosarcoma 2 associated transcript (non-coding RNA)
10	gene	92.07120	92.07208	negative	MGI_C57BL6J_3763716	BI734849	NA	NA	unclassified gene	expressed sequence BI734849
10	gene	92.07166	92.07182	negative	MGI_C57BL6J_5530926	Gm27544	ENSEMBL:ENSMUSG00000098979	MGI:5530926	unclassified non-coding RNA gene	predicted gene, 27544
10	gene	92.07209	92.07219	negative	MGI_C57BL6J_3618729	Mir135a-2	miRBase:MI0000715,NCBI_Gene:723955,ENSEMBL:ENSMUSG00000065524	MGI:3618729	miRNA gene	microRNA 135a-2
10	gene	92.07517	92.07536	negative	MGI_C57BL6J_5531381	Gm27999	ENSEMBL:ENSMUSG00000098394	MGI:5531381	unclassified non-coding RNA gene	predicted gene, 27999
10	gene	92.07549	92.07565	negative	MGI_C57BL6J_5530990	Gm27608	ENSEMBL:ENSMUSG00000099136	MGI:5530990	unclassified non-coding RNA gene	predicted gene, 27608
10	gene	92.10166	92.10193	negative	MGI_C57BL6J_5530970	Gm27588	ENSEMBL:ENSMUSG00000098664	MGI:5530970	unclassified non-coding RNA gene	predicted gene, 27588
10	gene	92.10371	92.10391	negative	MGI_C57BL6J_5531135	Gm27753	ENSEMBL:ENSMUSG00000098891	MGI:5531135	unclassified non-coding RNA gene	predicted gene, 27753
10	gene	92.13322	92.13335	negative	MGI_C57BL6J_5530964	Gm27582	ENSEMBL:ENSMUSG00000098662	MGI:5530964	unclassified non-coding RNA gene	predicted gene, 27582
10	gene	92.13496	92.13507	negative	MGI_C57BL6J_5530748	Gm27366	ENSEMBL:ENSMUSG00000098526	MGI:5530748	unclassified non-coding RNA gene	predicted gene, 27366
10	gene	92.13570	92.13581	negative	MGI_C57BL6J_5530801	Gm27419	ENSEMBL:ENSMUSG00000099307	MGI:5530801	unclassified non-coding RNA gene	predicted gene, 27419
10	gene	92.13714	92.13722	negative	MGI_C57BL6J_4834231	Mir1251	miRBase:MI0014021,NCBI_Gene:100526517,ENSEMBL:ENSMUSG00000093227	MGI:4834231	miRNA gene	microRNA 1251
10	gene	92.16210	92.16469	positive	MGI_C57BL6J_5477194	Gm26700	ENSEMBL:ENSMUSG00000097201	MGI:5477194	lncRNA gene	predicted gene, 26700
10	gene	92.17130	92.37537	negative	MGI_C57BL6J_5434113	Gm20757	NCBI_Gene:627800,ENSEMBL:ENSMUSG00000098040	MGI:5434113	lncRNA gene	predicted gene, 20757
10	pseudogene	92.22284	92.23768	negative	MGI_C57BL6J_3648240	Gm8512	NCBI_Gene:667203,ENSEMBL:ENSMUSG00000111104	MGI:3648240	pseudogene	predicted gene 8512
10	pseudogene	92.25859	92.25928	positive	MGI_C57BL6J_6095874	Gm47124	ENSEMBL:ENSMUSG00000111776	MGI:6095874	pseudogene	predicted gene, 47124
10	gene	92.38966	92.47119	negative	MGI_C57BL6J_5623623	Gm40738	NCBI_Gene:105245260	MGI:5623623	lncRNA gene	predicted gene, 40738
10	gene	92.40101	92.41750	positive	MGI_C57BL6J_1921071	4930401A07Rik	ENSEMBL:ENSMUSG00000110794	MGI:1921071	lncRNA gene	RIKEN cDNA 4930401A07 gene
10	pseudogene	92.48421	92.48496	positive	MGI_C57BL6J_5010228	Gm18043	NCBI_Gene:100416329,ENSEMBL:ENSMUSG00000111604	MGI:5010228	pseudogene	predicted gene, 18043
10	gene	92.48682	92.48688	positive	MGI_C57BL6J_5455661	Gm25884	ENSEMBL:ENSMUSG00000088407	MGI:5455661	snRNA gene	predicted gene, 25884
10	pseudogene	92.54221	92.54374	negative	MGI_C57BL6J_3646193	Gm4800	NCBI_Gene:216229,ENSEMBL:ENSMUSG00000111759	MGI:3646193	pseudogene	predicted gene 4800
10	pseudogene	92.58706	92.58737	positive	MGI_C57BL6J_3781700	Gm3523	NCBI_Gene:102636707,ENSEMBL:ENSMUSG00000111121	MGI:3781700	pseudogene	predicted gene 3523
10	gene	92.58721	92.58731	positive	MGI_C57BL6J_5452359	Gm22582	ENSEMBL:ENSMUSG00000076238	MGI:5452359	miRNA gene	predicted gene, 22582
10	gene	92.64409	92.65485	positive	MGI_C57BL6J_5590981	Gm31822	NCBI_Gene:102634175,ENSEMBL:ENSMUSG00000111470	MGI:5590981	lncRNA gene	predicted gene, 31822
10	gene	92.68475	92.72368	negative	MGI_C57BL6J_97293	Nedd1	NCBI_Gene:17997,ENSEMBL:ENSMUSG00000019988	MGI:97293	protein coding gene	neural precursor cell expressed, developmentally down-regulated gene 1
10	gene	92.68886	92.68901	negative	MGI_C57BL6J_5454018	Gm24241	ENSEMBL:ENSMUSG00000088412	MGI:5454018	snoRNA gene	predicted gene, 24241
10	pseudogene	92.70608	92.70626	negative	MGI_C57BL6J_6097289	Gm47993	ENSEMBL:ENSMUSG00000111432	MGI:6097289	pseudogene	predicted gene, 47993
10	gene	92.71751	92.72369	negative	MGI_C57BL6J_6215303	Gm49783	ENSEMBL:ENSMUSG00000111740	MGI:6215303	unclassified gene	predicted gene, 49783
10	gene	92.77561	93.08359	negative	MGI_C57BL6J_1922208	Cfap54	NCBI_Gene:380654,ENSEMBL:ENSMUSG00000020014	MGI:1922208	protein coding gene	cilia and flagella associated protein 54
10	gene	93.07481	93.07693	positive	MGI_C57BL6J_5623624	Gm40739	NCBI_Gene:105245261	MGI:5623624	lncRNA gene	predicted gene, 40739
10	gene	93.08420	93.09373	positive	MGI_C57BL6J_5591627	Gm32468	NCBI_Gene:102635028,ENSEMBL:ENSMUSG00000111013	MGI:5591627	lncRNA gene	predicted gene, 32468
10	gene	93.12642	93.12832	positive	MGI_C57BL6J_5623625	Gm40740	NCBI_Gene:105245262	MGI:5623625	lncRNA gene	predicted gene, 40740
10	gene	93.14321	93.14547	positive	MGI_C57BL6J_5623626	Gm40741	NCBI_Gene:105245263	MGI:5623626	lncRNA gene	predicted gene, 40741
10	gene	93.16088	93.26707	positive	MGI_C57BL6J_97517	Cdk17	NCBI_Gene:237459,ENSEMBL:ENSMUSG00000020015	MGI:97517	protein coding gene	cyclin-dependent kinase 17
10	gene	93.16278	93.16290	positive	MGI_C57BL6J_3836967	Mir1931	miRBase:MI0009920,NCBI_Gene:100316689,ENSEMBL:ENSMUSG00000089214	MGI:3836967	miRNA gene	microRNA 1931
10	gene	93.24741	93.31116	negative	MGI_C57BL6J_101762	Elk3	NCBI_Gene:13713,ENSEMBL:ENSMUSG00000008398	MGI:101762	protein coding gene	ELK3, member of ETS oncogene family
10	gene	93.27554	93.27881	positive	MGI_C57BL6J_5591763	Gm32604	NA	NA	lncRNA gene	predicted gene%2c 32604
10	gene	93.28498	93.28947	positive	MGI_C57BL6J_5591710	Gm32551	NCBI_Gene:102635134	MGI:5591710	lncRNA gene	predicted gene, 32551
10	gene	93.31733	93.32273	positive	MGI_C57BL6J_5591847	Gm32688	NCBI_Gene:102635316,ENSEMBL:ENSMUSG00000111531	MGI:5591847	lncRNA gene	predicted gene, 32688
10	gene	93.33539	93.34888	positive	MGI_C57BL6J_5009823	Gm17745	NCBI_Gene:432488,ENSEMBL:ENSMUSG00000110647	MGI:5009823	lncRNA gene	predicted gene, 17745
10	pseudogene	93.39709	93.39727	negative	MGI_C57BL6J_6096240	Gm47344	ENSEMBL:ENSMUSG00000111316	MGI:6096240	pseudogene	predicted gene, 47344
10	gene	93.43028	93.43196	negative	MGI_C57BL6J_5623627	Gm40742	NCBI_Gene:105245264	MGI:5623627	lncRNA gene	predicted gene, 40742
10	gene	93.43311	93.43316	positive	MGI_C57BL6J_5531256	Mir7688	miRBase:MI0025041,NCBI_Gene:102465791,ENSEMBL:ENSMUSG00000098679	MGI:5531256	miRNA gene	microRNA 7688
10	gene	93.45298	93.45305	negative	MGI_C57BL6J_4413759	n-TDgtc8	NCBI_Gene:102467629	MGI:4413759	tRNA gene	nuclear encoded tRNA aspartic acid 8 (anticodon GTC)
10	gene	93.45340	93.48490	positive	MGI_C57BL6J_96836	Lta4h	NCBI_Gene:16993,ENSEMBL:ENSMUSG00000015889	MGI:96836	protein coding gene	leukotriene A4 hydrolase
10	gene	93.48877	93.51930	positive	MGI_C57BL6J_96010	Hal	NCBI_Gene:15109,ENSEMBL:ENSMUSG00000020017	MGI:96010	protein coding gene	histidine ammonia lyase
10	gene	93.52334	93.54004	negative	MGI_C57BL6J_1919011	Amdhd1	NCBI_Gene:71761,ENSEMBL:ENSMUSG00000015890	MGI:1919011	protein coding gene	amidohydrolase domain containing 1
10	gene	93.54057	93.58433	positive	MGI_C57BL6J_2444738	Ccdc38	NCBI_Gene:237465,ENSEMBL:ENSMUSG00000036168	MGI:2444738	protein coding gene	coiled-coil domain containing 38
10	gene	93.58303	93.58971	negative	MGI_C57BL6J_1917128	Snrpf	NCBI_Gene:69878,ENSEMBL:ENSMUSG00000020018	MGI:1917128	protein coding gene	small nuclear ribonucleoprotein polypeptide F
10	gene	93.58941	93.60524	positive	MGI_C57BL6J_1921704	4933408J17Rik	NCBI_Gene:74454,ENSEMBL:ENSMUSG00000097407	MGI:1921704	lncRNA gene	RIKEN cDNA 4933408J17 gene
10	gene	93.61886	93.63432	positive	MGI_C57BL6J_6095926	Gm47156	ENSEMBL:ENSMUSG00000111366	MGI:6095926	lncRNA gene	predicted gene, 47156
10	gene	93.64068	93.74721	positive	MGI_C57BL6J_1888978	Ntn4	NCBI_Gene:57764,ENSEMBL:ENSMUSG00000020019	MGI:1888978	protein coding gene	netrin 4
10	pseudogene	93.66524	93.66585	negative	MGI_C57BL6J_3647055	Gm8580	NCBI_Gene:667338,ENSEMBL:ENSMUSG00000090159	MGI:3647055	pseudogene	predicted gene 8580
10	gene	93.67422	93.68332	negative	MGI_C57BL6J_3801763	Gm15915	NCBI_Gene:100504069,ENSEMBL:ENSMUSG00000085723	MGI:3801763	lncRNA gene	predicted gene 15915
10	gene	93.72673	93.72821	negative	MGI_C57BL6J_3802140	Gm15963	ENSEMBL:ENSMUSG00000086891	MGI:3802140	lncRNA gene	predicted gene 15963
10	pseudogene	93.77861	93.77977	positive	MGI_C57BL6J_3781748	Gm3571	NCBI_Gene:100041907,ENSEMBL:ENSMUSG00000090610	MGI:3781748	pseudogene	predicted gene 3571
10	gene	93.80730	93.80740	positive	MGI_C57BL6J_5456016	Gm26239	ENSEMBL:ENSMUSG00000096598	MGI:5456016	snRNA gene	predicted gene, 26239
10	gene	93.81997	93.85943	positive	MGI_C57BL6J_3045318	Usp44	NCBI_Gene:327799,ENSEMBL:ENSMUSG00000020020	MGI:3045318	protein coding gene	ubiquitin specific peptidase 44
10	gene	93.85849	93.89709	negative	MGI_C57BL6J_1929701	Metap2	NCBI_Gene:56307,ENSEMBL:ENSMUSG00000036112	MGI:1929701	protein coding gene	methionine aminopeptidase 2
10	gene	93.89716	93.90196	positive	MGI_C57BL6J_1922173	4930471D02Rik	ENSEMBL:ENSMUSG00000097689	MGI:1922173	lncRNA gene	RIKEN cDNA 4930471D02 gene
10	gene	93.91617	93.91634	negative	MGI_C57BL6J_5455739	Gm25962	ENSEMBL:ENSMUSG00000087798	MGI:5455739	snoRNA gene	predicted gene, 25962
10	pseudogene	93.91909	93.93627	positive	MGI_C57BL6J_6097484	Gm48126	ENSEMBL:ENSMUSG00000114757	MGI:6097484	pseudogene	predicted gene, 48126
10	gene	93.93917	94.03582	negative	MGI_C57BL6J_2143698	Vezt	NCBI_Gene:215008,ENSEMBL:ENSMUSG00000036099	MGI:2143698	protein coding gene	vezatin, adherens junctions transmembrane protein
10	gene	93.96152	93.96493	negative	MGI_C57BL6J_2143686	A630071D13Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA A630071D13 gene
10	gene	93.96377	93.96386	negative	MGI_C57BL6J_3619347	Mir331	miRBase:MI0000609,NCBI_Gene:723908,ENSEMBL:ENSMUSG00000065607	MGI:3619347	miRNA gene	microRNA 331
10	pseudogene	94.02808	94.02836	positive	MGI_C57BL6J_6097573	Gm48191	ENSEMBL:ENSMUSG00000111349	MGI:6097573	pseudogene	predicted gene, 48191
10	gene	94.03401	94.03580	negative	MGI_C57BL6J_6215053	Gm49628	ENSEMBL:ENSMUSG00000110869	MGI:6215053	unclassified gene	predicted gene, 49628
10	gene	94.03600	94.14534	positive	MGI_C57BL6J_1261419	Fgd6	NCBI_Gene:13998,ENSEMBL:ENSMUSG00000020021	MGI:1261419	protein coding gene	FYVE, RhoGEF and PH domain containing 6
10	pseudogene	94.09748	94.09815	negative	MGI_C57BL6J_5010576	Gm18391	NCBI_Gene:100417060,ENSEMBL:ENSMUSG00000110753	MGI:5010576	pseudogene	predicted gene, 18391
10	gene	94.10874	94.11115	positive	MGI_C57BL6J_6097846	Gm48372	ENSEMBL:ENSMUSG00000111539	MGI:6097846	unclassified gene	predicted gene, 48372
10	gene	94.14751	94.19722	positive	MGI_C57BL6J_1352465	Nr2c1	NCBI_Gene:22025,ENSEMBL:ENSMUSG00000005897	MGI:1352465	protein coding gene	nuclear receptor subfamily 2, group C, member 1
10	gene	94.18449	94.18457	negative	MGI_C57BL6J_5455899	Gm26122	ENSEMBL:ENSMUSG00000065296	MGI:5455899	snRNA gene	predicted gene, 26122
10	gene	94.19872	94.22144	positive	MGI_C57BL6J_1913664	Ndufa12	NCBI_Gene:66414,ENSEMBL:ENSMUSG00000020022	MGI:1913664	protein coding gene	NADH:ubiquinone oxidoreductase subunit A12
10	gene	94.23056	94.23861	negative	MGI_C57BL6J_5591908	Gm32749	NCBI_Gene:102635396	MGI:5591908	lncRNA gene	predicted gene, 32749
10	gene	94.29366	94.29870	negative	MGI_C57BL6J_3648918	Gm4792	NCBI_Gene:215472,ENSEMBL:ENSMUSG00000053420	MGI:3648918	protein coding gene	predicted gene 4792
10	gene	94.31191	94.59096	positive	MGI_C57BL6J_2442900	Tmcc3	NCBI_Gene:319880,ENSEMBL:ENSMUSG00000020023	MGI:2442900	protein coding gene	transmembrane and coiled coil domains 3
10	gene	94.40889	94.41073	positive	MGI_C57BL6J_3801971	Gm16155	ENSEMBL:ENSMUSG00000085409	MGI:3801971	lncRNA gene	predicted gene 16155
10	gene	94.41796	94.42863	negative	MGI_C57BL6J_5591986	Gm32827	NCBI_Gene:102635509	MGI:5591986	lncRNA gene	predicted gene, 32827
10	gene	94.51285	94.51478	negative	MGI_C57BL6J_5623628	Gm40743	NCBI_Gene:105245265	MGI:5623628	lncRNA gene	predicted gene, 40743
10	gene	94.56783	94.61208	negative	MGI_C57BL6J_3801736	Tmcc3os	ENSEMBL:ENSMUSG00000086269	MGI:3801736	antisense lncRNA gene	transmembrane and coiled coil domains 3, opposite strand
10	gene	94.58614	94.58620	negative	MGI_C57BL6J_5530918	Mir7211	miRBase:MI0023706,NCBI_Gene:102466817,ENSEMBL:ENSMUSG00000098544	MGI:5530918	miRNA gene	microRNA 7211
10	gene	94.60005	94.62370	negative	MGI_C57BL6J_5592057	Gm32898	NCBI_Gene:102635607	MGI:5592057	lncRNA gene	predicted gene, 32898
10	gene	94.62054	94.64866	positive	MGI_C57BL6J_6098271	Gm48657	ENSEMBL:ENSMUSG00000112477	MGI:6098271	lncRNA gene	predicted gene, 48657
10	pseudogene	94.65280	94.65305	negative	MGI_C57BL6J_6098273	Gm48658	ENSEMBL:ENSMUSG00000112473	MGI:6098273	pseudogene	predicted gene, 48658
10	gene	94.67103	94.68861	negative	MGI_C57BL6J_1914973	Cep83os	NCBI_Gene:67723,ENSEMBL:ENSMUSG00000097164	MGI:1914973	bidirectional promoter lncRNA gene	centrosomal protein 83, opposite strand
10	gene	94.68570	94.68862	positive	MGI_C57BL6J_6118596	Gm49167	ENSEMBL:ENSMUSG00000112203	MGI:6118596	unclassified gene	predicted gene, 49167
10	gene	94.68850	94.79085	positive	MGI_C57BL6J_1924298	Cep83	NCBI_Gene:77048,ENSEMBL:ENSMUSG00000020024	MGI:1924298	protein coding gene	centrosomal protein 83
10	gene	94.78197	94.78716	negative	MGI_C57BL6J_6098317	Gm48689	ENSEMBL:ENSMUSG00000112669	MGI:6098317	lncRNA gene	predicted gene, 48689
10	gene	94.79087	94.94527	negative	MGI_C57BL6J_1890127	Plxnc1	NCBI_Gene:54712,ENSEMBL:ENSMUSG00000074785	MGI:1890127	protein coding gene	plexin C1
10	gene	94.82153	94.82166	negative	MGI_C57BL6J_5453963	Gm24186	ENSEMBL:ENSMUSG00000088608	MGI:5453963	rRNA gene	predicted gene, 24186
10	gene	94.88131	94.88379	negative	MGI_C57BL6J_6098369	Gm48718	ENSEMBL:ENSMUSG00000112736	MGI:6098369	unclassified gene	predicted gene, 48718
10	gene	94.94859	94.94889	positive	MGI_C57BL6J_5455043	Gm25266	ENSEMBL:ENSMUSG00000089146	MGI:5455043	unclassified non-coding RNA gene	predicted gene, 25266
10	gene	94.96164	94.96524	positive	MGI_C57BL6J_5623629	Gm40744	NCBI_Gene:105245266	MGI:5623629	lncRNA gene	predicted gene, 40744
10	gene	94.99395	94.99944	negative	MGI_C57BL6J_6098611	Gm48867	ENSEMBL:ENSMUSG00000112277	MGI:6098611	lncRNA gene	predicted gene, 48867
10	gene	95.11638	95.11773	positive	MGI_C57BL6J_6098613	Gm48868	ENSEMBL:ENSMUSG00000112677	MGI:6098613	unclassified gene	predicted gene, 48868
10	gene	95.12058	95.14583	negative	MGI_C57BL6J_5588843	Gm29684	NCBI_Gene:628062,ENSEMBL:ENSMUSG00000112481	MGI:5588843	lncRNA gene	predicted gene, 29684
10	gene	95.13261	95.14062	negative	MGI_C57BL6J_5592250	Gm33091	NCBI_Gene:102635855,ENSEMBL:ENSMUSG00000112501	MGI:5592250	lncRNA gene	predicted gene, 33091
10	gene	95.16036	95.16566	positive	MGI_C57BL6J_6098623	Gm48874	ENSEMBL:ENSMUSG00000112682	MGI:6098623	unclassified gene	predicted gene, 48874
10	gene	95.17474	95.32413	negative	MGI_C57BL6J_1336168	Cradd	NCBI_Gene:12905,ENSEMBL:ENSMUSG00000045867	MGI:1336168	protein coding gene	CASP2 and RIPK1 domain containing adaptor with death domain
10	gene	95.26123	95.26498	negative	MGI_C57BL6J_2443745	A630089K24Rik	NA	NA	unclassified gene	RIKEN cDNA A630089K24 gene
10	gene	95.31287	95.31485	negative	MGI_C57BL6J_6098634	Gm48880	ENSEMBL:ENSMUSG00000112744	MGI:6098634	unclassified gene	predicted gene, 48880
10	gene	95.31825	95.32436	positive	MGI_C57BL6J_6098637	Gm48882	ENSEMBL:ENSMUSG00000112593	MGI:6098637	lncRNA gene	predicted gene, 48882
10	gene	95.33628	95.36620	positive	MGI_C57BL6J_1916879	2310039L15Rik	NCBI_Gene:69629,ENSEMBL:ENSMUSG00000100550	MGI:1916879	lncRNA gene	RIKEN cDNA 2310039L15 gene
10	gene	95.38390	95.41725	negative	MGI_C57BL6J_1201787	Socs2	NCBI_Gene:216233,ENSEMBL:ENSMUSG00000020027	MGI:1201787	protein coding gene	suppressor of cytokine signaling 2
10	gene	95.41312	95.41460	positive	MGI_C57BL6J_5592389	Gm33230	NCBI_Gene:102636052	MGI:5592389	lncRNA gene	predicted gene, 33230
10	gene	95.41738	95.42864	positive	MGI_C57BL6J_1917773	5730420D15Rik	NCBI_Gene:70523,ENSEMBL:ENSMUSG00000097766	MGI:1917773	lncRNA gene	RIKEN cDNA 5730420D15 gene
10	gene	95.44532	95.46122	negative	MGI_C57BL6J_6096651	Gm47599	ENSEMBL:ENSMUSG00000112261	MGI:6096651	lncRNA gene	predicted gene, 47599
10	pseudogene	95.45467	95.45497	negative	MGI_C57BL6J_6096653	Gm47600	ENSEMBL:ENSMUSG00000112725	MGI:6096653	pseudogene	predicted gene, 47600
10	pseudogene	95.47699	95.47841	negative	MGI_C57BL6J_3781795	Gm3619	NCBI_Gene:100042004,ENSEMBL:ENSMUSG00000112450	MGI:3781795	pseudogene	predicted gene 3619
10	gene	95.48081	95.50199	negative	MGI_C57BL6J_1333774	Mrpl42	NCBI_Gene:67270,ENSEMBL:ENSMUSG00000062981	MGI:1333774	protein coding gene	mitochondrial ribosomal protein L42
10	gene	95.51223	95.51479	negative	MGI_C57BL6J_5825876	Gm46239	NCBI_Gene:108167829	MGI:5825876	lncRNA gene	predicted gene, 46239
10	gene	95.51515	95.54566	positive	MGI_C57BL6J_1934835	Ube2n	NCBI_Gene:93765,ENSEMBL:ENSMUSG00000074781	MGI:1934835	protein coding gene	ubiquitin-conjugating enzyme E2N
10	gene	95.54701	95.56418	negative	MGI_C57BL6J_1918457	Nudt4	NCBI_Gene:71207,ENSEMBL:ENSMUSG00000020029	MGI:1918457	protein coding gene	nudix (nucleoside diphosphate linked moiety X)-type motif 4
10	gene	95.55923	95.55932	negative	MGI_C57BL6J_4834226	Mir3058	miRBase:MI0004418,NCBI_Gene:100526463,ENSEMBL:ENSMUSG00000092867	MGI:4834226	miRNA gene	microRNA 3058
10	gene	95.60379	95.60412	positive	MGI_C57BL6J_5453553	Gm23776	ENSEMBL:ENSMUSG00000089618	MGI:5453553	unclassified non-coding RNA gene	predicted gene, 23776
10	gene	95.63024	95.63224	negative	MGI_C57BL6J_5592495	Gm33336	NCBI_Gene:102636201,ENSEMBL:ENSMUSG00000112439	MGI:5592495	lncRNA gene	predicted gene, 33336
10	gene	95.63448	95.63643	positive	MGI_C57BL6J_6096760	Gm47667	ENSEMBL:ENSMUSG00000112538	MGI:6096760	lncRNA gene	predicted gene, 47667
10	pseudogene	95.67269	95.67351	negative	MGI_C57BL6J_3646302	Anapc15-ps	NCBI_Gene:628119,ENSEMBL:ENSMUSG00000074780	MGI:3646302	pseudogene	anaphase prompoting complex C subunit 15, pseudogene
10	gene	95.68081	95.68112	positive	MGI_C57BL6J_1916857	2310011C19Rik	NA	NA	unclassified gene	RIKEN cDNA 2310011C19 gene
10	pseudogene	95.70305	95.70346	negative	MGI_C57BL6J_6096763	Gm47669	ENSEMBL:ENSMUSG00000112025	MGI:6096763	pseudogene	predicted gene, 47669
10	gene	95.71400	95.71751	negative	MGI_C57BL6J_6096765	Gm47671	ENSEMBL:ENSMUSG00000112519	MGI:6096765	lncRNA gene	predicted gene, 47671
10	gene	95.71913	95.72250	negative	MGI_C57BL6J_1915779	1110019B22Rik	ENSEMBL:ENSMUSG00000112289	MGI:1915779	lncRNA gene	RIKEN cDNA 1110019B22 gene
10	gene	95.73018	95.73936	positive	MGI_C57BL6J_6096827	Gm47708	ENSEMBL:ENSMUSG00000112188	MGI:6096827	lncRNA gene	predicted gene, 47708
10	gene	95.74608	95.79724	positive	MGI_C57BL6J_3041208	4732465J04Rik	NCBI_Gene:414105,ENSEMBL:ENSMUSG00000101517	MGI:3041208	lncRNA gene	RIKEN cDNA 4732465J04 gene
10	gene	95.81134	95.81789	negative	MGI_C57BL6J_6096845	Gm47718	ENSEMBL:ENSMUSG00000112771	MGI:6096845	lncRNA gene	predicted gene, 47718
10	gene	95.81732	95.89681	positive	MGI_C57BL6J_5592536	Gm33377	NCBI_Gene:102636263	MGI:5592536	lncRNA gene	predicted gene, 33377
10	gene	95.81757	95.84912	positive	MGI_C57BL6J_6096847	Gm47719	ENSEMBL:ENSMUSG00000112599	MGI:6096847	lncRNA gene	predicted gene, 47719
10	gene	95.82397	95.84316	negative	MGI_C57BL6J_5592702	Gm33543	NCBI_Gene:102636491,ENSEMBL:ENSMUSG00000110353	MGI:5592702	lncRNA gene	predicted gene, 33543
10	pseudogene	95.87048	95.87080	negative	MGI_C57BL6J_6096855	Gm47724	ENSEMBL:ENSMUSG00000111992	MGI:6096855	pseudogene	predicted gene, 47724
10	gene	95.89344	95.89726	positive	MGI_C57BL6J_6096856	Gm47725	ENSEMBL:ENSMUSG00000112400	MGI:6096856	lncRNA gene	predicted gene, 47725
10	gene	95.89860	95.89874	positive	MGI_C57BL6J_5454210	Gm24433	ENSEMBL:ENSMUSG00000077268	MGI:5454210	snoRNA gene	predicted gene, 24433
10	gene	95.94065	96.04552	positive	MGI_C57BL6J_2442192	Eea1	NCBI_Gene:216238,ENSEMBL:ENSMUSG00000036499	MGI:2442192	protein coding gene	early endosome antigen 1
10	pseudogene	96.04763	96.09601	negative	MGI_C57BL6J_6270484	Gm49817	ENSEMBL:ENSMUSG00000117008	MGI:6270484	pseudogene	predicted gene, 49817
10	pseudogene	96.12798	96.12974	negative	MGI_C57BL6J_6097923	Gm48425	ENSEMBL:ENSMUSG00000112316	MGI:6097923	pseudogene	predicted gene, 48425
10	gene	96.13655	96.13704	positive	MGI_C57BL6J_3646788	Gm5426	NCBI_Gene:432491,ENSEMBL:ENSMUSG00000096486	MGI:3646788	protein coding gene	predicted pseudogene 5426
10	gene	96.16433	96.16443	positive	MGI_C57BL6J_5452690	Gm22913	ENSEMBL:ENSMUSG00000094523	MGI:5452690	miRNA gene	predicted gene, 22913
10	gene	96.18092	96.18269	positive	MGI_C57BL6J_5623631	Gm40746	NCBI_Gene:105245268	MGI:5623631	lncRNA gene	predicted gene, 40746
10	gene	96.22602	96.24887	positive	MGI_C57BL6J_1922131	4930459C07Rik	NCBI_Gene:74881,ENSEMBL:ENSMUSG00000112762	MGI:1922131	lncRNA gene	RIKEN cDNA 4930459C07 gene
10	gene	96.22633	96.25891	negative	MGI_C57BL6J_5623632	Gm40747	NCBI_Gene:105245269	MGI:5623632	lncRNA gene	predicted gene, 40747
10	gene	96.30550	96.30873	negative	MGI_C57BL6J_5623633	Gm40748	NCBI_Gene:105245270	MGI:5623633	lncRNA gene	predicted gene, 40748
10	gene	96.30908	96.36253	positive	MGI_C57BL6J_5592941	Gm33782	NCBI_Gene:102636813,ENSEMBL:ENSMUSG00000112290	MGI:5592941	lncRNA gene	predicted gene, 33782
10	gene	96.30934	96.32072	positive	MGI_C57BL6J_6097926	Gm48427	ENSEMBL:ENSMUSG00000112234	MGI:6097926	lncRNA gene	predicted gene, 48427
10	gene	96.33609	96.34582	negative	MGI_C57BL6J_6097928	Gm48428	ENSEMBL:ENSMUSG00000112749	MGI:6097928	lncRNA gene	predicted gene, 48428
10	pseudogene	96.40873	96.40913	negative	MGI_C57BL6J_5012276	Gm20091	NCBI_Gene:100504157,ENSEMBL:ENSMUSG00000094249	MGI:5012276	pseudogene	predicted gene, 20091
10	pseudogene	96.47647	96.47753	positive	MGI_C57BL6J_3643183	Gm8601	NCBI_Gene:667380,ENSEMBL:ENSMUSG00000097939	MGI:3643183	pseudogene	predicted gene 8601
10	gene	96.49572	96.52398	negative	MGI_C57BL6J_6098035	Gm48505	ENSEMBL:ENSMUSG00000112264	MGI:6098035	lncRNA gene	predicted gene, 48505
10	gene	96.51916	96.59874	negative	MGI_C57BL6J_5593002	Gm33843	NCBI_Gene:102636895,ENSEMBL:ENSMUSG00000112354	MGI:5593002	lncRNA gene	predicted gene, 33843
10	gene	96.61700	96.62281	positive	MGI_C57BL6J_88215	Btg1	NCBI_Gene:12226,ENSEMBL:ENSMUSG00000036478	MGI:88215	protein coding gene	B cell translocation gene 1, anti-proliferative
10	pseudogene	96.71181	96.71209	positive	MGI_C57BL6J_6098038	Gm48507	ENSEMBL:ENSMUSG00000112362	MGI:6098038	pseudogene	predicted gene, 48507
10	gene	96.71576	96.72792	positive	MGI_C57BL6J_5593056	Gm33897	NCBI_Gene:102636973	MGI:5593056	lncRNA gene	predicted gene, 33897
10	pseudogene	96.76848	96.76983	negative	MGI_C57BL6J_3647629	Gm6859	NCBI_Gene:628256,ENSEMBL:ENSMUSG00000112588	MGI:3647629	pseudogene	predicted gene 6859
10	pseudogene	96.79839	96.79872	positive	MGI_C57BL6J_6098041	Gm48509	ENSEMBL:ENSMUSG00000112293	MGI:6098041	pseudogene	predicted gene, 48509
10	gene	96.80104	96.88471	positive	MGI_C57BL6J_6098057	Gm48521	ENSEMBL:ENSMUSG00000111912	MGI:6098057	lncRNA gene	predicted gene, 48521
10	gene	96.85558	96.85567	negative	MGI_C57BL6J_5454364	Gm24587	ENSEMBL:ENSMUSG00000080347	MGI:5454364	miRNA gene	predicted gene, 24587
10	gene	96.90133	96.92019	positive	MGI_C57BL6J_5825877	Gm46240	NCBI_Gene:108167830	MGI:5825877	protein coding gene	predicted gene, 46240
10	gene	96.90316	96.95887	negative	MGI_C57BL6J_5593140	Gm33981	NCBI_Gene:102637079,ENSEMBL:ENSMUSG00000112488	MGI:5593140	lncRNA gene	predicted gene, 33981
10	gene	97.03577	97.06106	positive	MGI_C57BL6J_1922551	4930556N09Rik	NCBI_Gene:75301,ENSEMBL:ENSMUSG00000111924	MGI:1922551	lncRNA gene	RIKEN cDNA 4930556N09 gene
10	gene	97.05774	97.05825	positive	MGI_C57BL6J_1920555	1700038C09Rik	NA	NA	unclassified gene	RIKEN cDNA 1700038C09 gene
10	pseudogene	97.10549	97.10658	negative	MGI_C57BL6J_6098109	Gm48555	ENSEMBL:ENSMUSG00000112631	MGI:6098109	pseudogene	predicted gene, 48555
10	pseudogene	97.19920	97.20045	negative	MGI_C57BL6J_3648168	Gm8613	NCBI_Gene:667407,ENSEMBL:ENSMUSG00000112892	MGI:3648168	pseudogene	predicted gene 8613
10	gene	97.20739	97.23576	negative	MGI_C57BL6J_5593203	Gm34044	NCBI_Gene:102637160	MGI:5593203	lncRNA gene	predicted gene, 34044
10	pseudogene	97.24191	97.24321	positive	MGI_C57BL6J_5010700	Gm18515	NCBI_Gene:100417299,ENSEMBL:ENSMUSG00000111981	MGI:5010700	pseudogene	predicted gene, 18515
10	gene	97.38876	97.42858	negative	MGI_C57BL6J_5593273	Gm34114	NCBI_Gene:102637248	MGI:5593273	lncRNA gene	predicted gene, 34114
10	gene	97.42348	97.42356	positive	MGI_C57BL6J_4950405	Mir3966	miRBase:MI0016975,NCBI_Gene:100628616,ENSEMBL:ENSMUSG00000105557	MGI:4950405	miRNA gene	microRNA 3966
10	gene	97.47950	97.51816	positive	MGI_C57BL6J_94872	Dcn	NCBI_Gene:13179,ENSEMBL:ENSMUSG00000019929	MGI:94872	protein coding gene	decorin
10	gene	97.56513	97.57270	positive	MGI_C57BL6J_109347	Lum	NCBI_Gene:17022,ENSEMBL:ENSMUSG00000036446	MGI:109347	protein coding gene	lumican
10	gene	97.59098	97.59693	negative	MGI_C57BL6J_1922275	4930473O22Rik	NCBI_Gene:75025,ENSEMBL:ENSMUSG00000112484	MGI:1922275	lncRNA gene	RIKEN cDNA 4930473O22 gene
10	gene	97.60688	97.61369	positive	MGI_C57BL6J_1202398	Kera	NCBI_Gene:16545,ENSEMBL:ENSMUSG00000019932	MGI:1202398	protein coding gene	keratocan
10	gene	97.62017	97.62326	negative	MGI_C57BL6J_5623634	Gm40749	NCBI_Gene:105245271	MGI:5623634	lncRNA gene	predicted gene, 40749
10	gene	97.64407	97.68245	positive	MGI_C57BL6J_107942	Epyc	NCBI_Gene:13516,ENSEMBL:ENSMUSG00000019936	MGI:107942	protein coding gene	epiphycan
10	gene	97.68141	97.96709	negative	MGI_C57BL6J_3642925	Gm10754	NCBI_Gene:100038699,ENSEMBL:ENSMUSG00000074776	MGI:3642925	lncRNA gene	predicted gene 10754
10	gene	97.69306	97.69493	positive	MGI_C57BL6J_1913966	Ccer1	NCBI_Gene:66716,ENSEMBL:ENSMUSG00000047025	MGI:1913966	protein coding gene	coiled-coil glutamate-rich protein 1
10	gene	97.71477	97.75370	positive	MGI_C57BL6J_1925377	4930525C09Rik	NCBI_Gene:78127,ENSEMBL:ENSMUSG00000112497	MGI:1925377	lncRNA gene	RIKEN cDNA 4930525C09 gene
10	gene	97.72487	97.72675	negative	MGI_C57BL6J_3641867	C030005K15Rik	ENSEMBL:ENSMUSG00000079183	MGI:3641867	protein coding gene	RIKEN cDNA C030005K15 gene
10	gene	97.74476	97.74488	negative	MGI_C57BL6J_5455435	Gm25658	ENSEMBL:ENSMUSG00000089097	MGI:5455435	snoRNA gene	predicted gene, 25658
10	gene	98.29993	98.35187	negative	MGI_C57BL6J_3647678	Gm8633	NCBI_Gene:667438,ENSEMBL:ENSMUSG00000112896	MGI:3647678	lncRNA gene	predicted gene 8633
10	pseudogene	98.30102	98.30125	positive	MGI_C57BL6J_6098315	Gm48687	ENSEMBL:ENSMUSG00000112457	MGI:6098315	pseudogene	predicted gene, 48687
10	gene	98.48651	98.48687	negative	MGI_C57BL6J_5610859	Gm37631	ENSEMBL:ENSMUSG00000102310	MGI:5610859	unclassified gene	predicted gene, 37631
10	gene	98.53748	98.56984	positive	MGI_C57BL6J_5593456	Gm34297	NCBI_Gene:102637506,ENSEMBL:ENSMUSG00000112874	MGI:5593456	lncRNA gene	predicted gene, 34297
10	gene	98.65380	98.69971	negative	MGI_C57BL6J_3646787	Gm5427	ENSEMBL:ENSMUSG00000112647	MGI:3646787	lncRNA gene	predicted gene 5427
10	gene	98.80714	98.80947	positive	MGI_C57BL6J_5623635	Gm40750	NCBI_Gene:105245273	MGI:5623635	lncRNA gene	predicted gene, 40750
10	gene	98.83401	98.88274	negative	MGI_C57BL6J_5593505	Gm34346	NCBI_Gene:102637570	MGI:5593505	lncRNA gene	predicted gene, 34346
10	gene	98.91436	99.02614	positive	MGI_C57BL6J_104653	Atp2b1	NCBI_Gene:67972,ENSEMBL:ENSMUSG00000019943	MGI:104653	protein coding gene	ATPase, Ca++ transporting, plasma membrane 1
10	gene	99.03947	99.04144	positive	MGI_C57BL6J_6098443	Gm48761	ENSEMBL:ENSMUSG00000112660	MGI:6098443	unclassified gene	predicted gene, 48761
10	gene	99.10579	99.10808	negative	MGI_C57BL6J_6098457	Gm48768	ENSEMBL:ENSMUSG00000112346	MGI:6098457	lncRNA gene	predicted gene, 48768
10	gene	99.10704	99.19807	positive	MGI_C57BL6J_1918511	Poc1b	NCBI_Gene:382406,ENSEMBL:ENSMUSG00000019952	MGI:1918511	protein coding gene	POC1 centriolar protein B
10	gene	99.10814	99.11325	positive	MGI_C57BL6J_894692	Galnt4	NCBI_Gene:14426,ENSEMBL:ENSMUSG00000090035	MGI:894692	protein coding gene	polypeptide N-acetylgalactosaminyltransferase 4
10	gene	99.12517	99.12632	negative	MGI_C57BL6J_104524	Phxr2	ENSEMBL:ENSMUSG00000055108	MGI:104524	protein coding gene	per-hexamer repeat gene 2
10	gene	99.17918	99.18461	negative	MGI_C57BL6J_3801746	Gm16239	ENSEMBL:ENSMUSG00000089994	MGI:3801746	lncRNA gene	predicted gene 16239
10	gene	99.21644	99.23209	negative	MGI_C57BL6J_5593733	Gm34574	NCBI_Gene:102637874,ENSEMBL:ENSMUSG00000112805	MGI:5593733	lncRNA gene	predicted gene, 34574
10	gene	99.23279	99.23762	negative	MGI_C57BL6J_6098641	Gm48884	ENSEMBL:ENSMUSG00000112902	MGI:6098641	lncRNA gene	predicted gene, 48884
10	gene	99.23307	99.24306	positive	MGI_C57BL6J_5593936	Gm34777	NCBI_Gene:102638142,ENSEMBL:ENSMUSG00000111923	MGI:5593936	lncRNA gene	predicted gene, 34777
10	gene	99.26323	99.26749	positive	MGI_C57BL6J_1914853	Dusp6	NCBI_Gene:67603,ENSEMBL:ENSMUSG00000019960	MGI:1914853	protein coding gene	dual specificity phosphatase 6
10	gene	99.26686	99.27091	negative	MGI_C57BL6J_5594080	Gm34921	NCBI_Gene:102638331,ENSEMBL:ENSMUSG00000112384	MGI:5594080	lncRNA gene	predicted gene, 34921
10	gene	99.26790	99.27908	positive	MGI_C57BL6J_6097430	Gm48089	ENSEMBL:ENSMUSG00000112544	MGI:6097430	lncRNA gene	predicted gene, 48089
10	gene	99.29889	99.42305	positive	MGI_C57BL6J_2445145	B530045E10Rik	ENSEMBL:ENSMUSG00000044633	MGI:2445145	lncRNA gene	RIKEN cDNA B530045E10 gene
10	pseudogene	99.44384	99.44703	positive	MGI_C57BL6J_95633	Gad1-ps	NCBI_Gene:382407,ENSEMBL:ENSMUSG00000090665	MGI:95633	pseudogene	glutamate decarboxylase 1, pseudogene
10	gene	99.45022	99.46204	negative	MGI_C57BL6J_5594194	Gm35035	NCBI_Gene:102638482,ENSEMBL:ENSMUSG00000112082	MGI:5594194	lncRNA gene	predicted gene, 35035
10	gene	99.45689	99.49059	positive	MGI_C57BL6J_5594142	Gm34983	NCBI_Gene:102638407,ENSEMBL:ENSMUSG00000112265	MGI:5594142	lncRNA gene	predicted gene, 34983
10	pseudogene	99.53762	99.53807	negative	MGI_C57BL6J_6097425	Gm48085	ENSEMBL:ENSMUSG00000112180	MGI:6097425	pseudogene	predicted gene, 48085
10	gene	99.60917	99.65813	positive	MGI_C57BL6J_5012295	Gm20110	NCBI_Gene:100504202,ENSEMBL:ENSMUSG00000111962	MGI:5012295	lncRNA gene	predicted gene, 20110
10	pseudogene	99.63872	99.64192	negative	MGI_C57BL6J_5010594	Gm18409	NCBI_Gene:100417125,ENSEMBL:ENSMUSG00000112503	MGI:5010594	pseudogene	predicted gene, 18409
10	gene	99.66077	99.69201	positive	MGI_C57BL6J_5594260	Gm35101	NCBI_Gene:102638567,ENSEMBL:ENSMUSG00000112810	MGI:5594260	lncRNA gene	predicted gene, 35101
10	gene	99.71914	99.89116	positive	MGI_C57BL6J_6096613	Gm47578	ENSEMBL:ENSMUSG00000113032	MGI:6096613	lncRNA gene	predicted gene, 47578
10	gene	99.75771	99.75966	negative	MGI_C57BL6J_1919082	Csl	NCBI_Gene:71832,ENSEMBL:ENSMUSG00000046934	MGI:1919082	protein coding gene	citrate synthase like
10	gene	99.75951	99.83056	positive	MGI_C57BL6J_5594365	Gm35206	NCBI_Gene:102638712,ENSEMBL:ENSMUSG00000112304	MGI:5594365	lncRNA gene	predicted gene, 35206
10	pseudogene	99.86537	99.86602	negative	MGI_C57BL6J_6096615	Gm47579	ENSEMBL:ENSMUSG00000112463	MGI:6096615	pseudogene	predicted gene, 47579
10	gene	99.90300	99.92554	positive	MGI_C57BL6J_5594596	Gm35437	NCBI_Gene:102639018	MGI:5594596	lncRNA gene	predicted gene, 35437
10	pseudogene	99.98862	99.98979	positive	MGI_C57BL6J_5010055	Gm17870	NCBI_Gene:100416012,ENSEMBL:ENSMUSG00000112299	MGI:5010055	pseudogene	predicted gene, 17870
10	gene	100.01563	100.10042	positive	MGI_C57BL6J_96974	Kitl	NCBI_Gene:17311,ENSEMBL:ENSMUSG00000019966	MGI:96974	protein coding gene	kit ligand
10	gene	100.12987	100.14414	negative	MGI_C57BL6J_5594692	Gm35533	NCBI_Gene:102639153,ENSEMBL:ENSMUSG00000112831	MGI:5594692	lncRNA gene	predicted gene, 35533
10	gene	100.13950	100.13961	positive	MGI_C57BL6J_5452695	Gm22918	ENSEMBL:ENSMUSG00000096586	MGI:5452695	miRNA gene	predicted gene, 22918
10	gene	100.14425	100.14436	positive	MGI_C57BL6J_5455064	Gm25287	ENSEMBL:ENSMUSG00000095539	MGI:5455064	miRNA gene	predicted gene, 25287
10	gene	100.20387	100.20434	negative	MGI_C57BL6J_6096695	Gm47627	ENSEMBL:ENSMUSG00000112633	MGI:6096695	unclassified gene	predicted gene, 47627
10	pseudogene	100.29794	100.29865	negative	MGI_C57BL6J_3646823	Gm8689	NCBI_Gene:667532,ENSEMBL:ENSMUSG00000112245	MGI:3646823	pseudogene	predicted gene 8689
10	pseudogene	100.30650	100.30719	negative	MGI_C57BL6J_3779885	Gm9476	NCBI_Gene:670007,ENSEMBL:ENSMUSG00000112069	MGI:3779885	pseudogene	predicted gene 9476
10	pseudogene	100.31702	100.32027	negative	MGI_C57BL6J_6096703	Gm47632	ENSEMBL:ENSMUSG00000112522	MGI:6096703	pseudogene	predicted gene, 47632
10	pseudogene	100.32031	100.32143	negative	MGI_C57BL6J_6096697	Gm47628	ENSEMBL:ENSMUSG00000112122	MGI:6096697	pseudogene	predicted gene, 47628
10	pseudogene	100.32110	100.32137	positive	MGI_C57BL6J_6096700	Gm47630	ENSEMBL:ENSMUSG00000112178	MGI:6096700	pseudogene	predicted gene, 47630
10	pseudogene	100.32546	100.32629	positive	MGI_C57BL6J_3647354	Gm4898	NCBI_Gene:235966,ENSEMBL:ENSMUSG00000112737	MGI:3647354	pseudogene	predicted gene 4898
10	pseudogene	100.33054	100.33141	positive	MGI_C57BL6J_3646142	Gm8701	NCBI_Gene:667556,ENSEMBL:ENSMUSG00000112408	MGI:3646142	pseudogene	predicted gene 8701
10	gene	100.33568	100.33659	positive	MGI_C57BL6J_3782481	Gm4301	NCBI_Gene:100043224,ENSEMBL:ENSMUSG00000094314	MGI:3782481	protein coding gene	predicted gene 4301
10	gene	100.34084	100.34176	positive	MGI_C57BL6J_3782482	Gm4302	NCBI_Gene:100043227,ENSEMBL:ENSMUSG00000091101	MGI:3782482	protein coding gene	predicted gene 4302
10	gene	100.34597	100.34688	positive	MGI_C57BL6J_3782483	Gm4303	NCBI_Gene:100043231,ENSEMBL:ENSMUSG00000112931	MGI:3782483	protein coding gene	predicted gene 4303
10	gene	100.35109	100.35200	positive	MGI_C57BL6J_3782485	Gm4305	NCBI_Gene:100043235,ENSEMBL:ENSMUSG00000112856	MGI:3782485	protein coding gene	predicted gene 4305
10	pseudogene	100.35623	100.35712	positive	MGI_C57BL6J_3644351	Gm8711	NCBI_Gene:667580,ENSEMBL:ENSMUSG00000091552	MGI:3644351	pseudogene	predicted gene 8711
10	gene	100.36134	100.36225	positive	MGI_C57BL6J_3782487	Gm4307	NCBI_Gene:100043239,ENSEMBL:ENSMUSG00000096744	MGI:3782487	protein coding gene	predicted gene 4307
10	pseudogene	100.36650	100.36741	positive	MGI_C57BL6J_3782489	Gm4308	NCBI_Gene:100043242,ENSEMBL:ENSMUSG00000095673	MGI:3782489	pseudogene	predicted gene 4308
10	pseudogene	100.37125	100.37213	negative	MGI_C57BL6J_3782491	Gm4310	NCBI_Gene:100043244,ENSEMBL:ENSMUSG00000112480	MGI:3782491	pseudogene	predicted gene 4310
10	gene	100.37286	100.38383	negative	MGI_C57BL6J_6096701	Gm47631	ENSEMBL:ENSMUSG00000112485	MGI:6096701	lncRNA gene	predicted gene, 47631
10	pseudogene	100.37646	100.37733	negative	MGI_C57BL6J_3647757	Gm8723	NCBI_Gene:667607,ENSEMBL:ENSMUSG00000112777	MGI:3647757	pseudogene	predicted gene 8723
10	gene	100.38165	100.38256	negative	MGI_C57BL6J_3782493	Gm4312	NCBI_Gene:100043247,ENSEMBL:ENSMUSG00000096640	MGI:3782493	protein coding gene	predicted gene 4312
10	pseudogene	100.39629	100.39707	negative	MGI_C57BL6J_3643164	Gm4781	NCBI_Gene:213051,ENSEMBL:ENSMUSG00000112453	MGI:3643164	pseudogene	predicted gene 4781
10	gene	100.43294	100.43357	negative	MGI_C57BL6J_6096768	Gm47673	ENSEMBL:ENSMUSG00000112580	MGI:6096768	unclassified gene	predicted gene, 47673
10	gene	100.44390	100.48735	negative	MGI_C57BL6J_3036255	Tmtc3	NCBI_Gene:237500,ENSEMBL:ENSMUSG00000036676	MGI:3036255	protein coding gene	transmembrane and tetratricopeptide repeat containing 3
10	gene	100.48755	100.57484	positive	MGI_C57BL6J_2384917	Cep290	NCBI_Gene:216274,ENSEMBL:ENSMUSG00000019971	MGI:2384917	protein coding gene	centrosomal protein 290
10	gene	100.57227	100.59042	negative	MGI_C57BL6J_1921197	4930430F08Rik	NCBI_Gene:68281,ENSEMBL:ENSMUSG00000046567	MGI:1921197	protein coding gene	RIKEN cDNA 4930430F08 gene
10	gene	100.57743	100.58371	positive	MGI_C57BL6J_6097228	Gm47956	ENSEMBL:ENSMUSG00000112000	MGI:6097228	lncRNA gene	predicted gene, 47956
10	gene	100.59048	100.61840	positive	MGI_C57BL6J_1913855	1700017N19Rik	NCBI_Gene:66605,ENSEMBL:ENSMUSG00000056912	MGI:1913855	protein coding gene	RIKEN cDNA 1700017N19 gene
10	pseudogene	100.65163	100.65194	positive	MGI_C57BL6J_6096210	Gm47325	ENSEMBL:ENSMUSG00000112328	MGI:6096210	pseudogene	predicted gene, 47325
10	gene	100.70753	100.74164	negative	MGI_C57BL6J_5594881	Gm35722	NCBI_Gene:102639396,ENSEMBL:ENSMUSG00000112104	MGI:5594881	lncRNA gene	predicted gene, 35722
10	pseudogene	101.27162	101.27262	positive	MGI_C57BL6J_5011418	Gm19233	NCBI_Gene:100418475,ENSEMBL:ENSMUSG00000111906	MGI:5011418	pseudogene	predicted gene, 19233
10	gene	101.54418	101.54431	positive	MGI_C57BL6J_5456055	Gm26278	ENSEMBL:ENSMUSG00000087723	MGI:5456055	snoRNA gene	predicted gene, 26278
10	gene	101.68149	102.39185	positive	MGI_C57BL6J_1914819	Mgat4c	NCBI_Gene:67569,ENSEMBL:ENSMUSG00000019888	MGI:1914819	protein coding gene	MGAT4 family, member C
10	gene	101.73077	101.73156	positive	MGI_C57BL6J_6095728	Gm47032	ENSEMBL:ENSMUSG00000111931	MGI:6095728	unclassified gene	predicted gene, 47032
10	gene	101.77269	101.77277	positive	MGI_C57BL6J_4834225	Mir3059	miRBase:MI0004412,NCBI_Gene:100526516,ENSEMBL:ENSMUSG00000092952	MGI:4834225	miRNA gene	microRNA 3059
10	gene	102.11444	102.11646	positive	MGI_C57BL6J_5608885	B230210A14Rik	NA	NA	unclassified gene	Riken cDNA B230210A14 gene
10	gene	102.15891	102.27354	positive	MGI_C57BL6J_1921048	4930402I19Rik	NA	NA	unclassified gene	RIKEN cDNA 4930402I19 gene
10	gene	102.27191	102.27441	positive	MGI_C57BL6J_2444255	D930019F10Rik	NA	NA	unclassified gene	RIKEN cDNA D930019F10 gene
10	gene	102.31961	102.32189	positive	MGI_C57BL6J_6095726	Gm47031	ENSEMBL:ENSMUSG00000112342	MGI:6095726	lncRNA gene	predicted gene, 47031
10	gene	102.41588	102.41801	positive	MGI_C57BL6J_6095730	Gm47033	ENSEMBL:ENSMUSG00000111990	MGI:6095730	lncRNA gene	predicted gene, 47033
10	gene	102.43191	102.43234	negative	MGI_C57BL6J_6095715	Gm47025	ENSEMBL:ENSMUSG00000112012	MGI:6095715	unclassified gene	predicted gene, 47025
10	gene	102.43527	102.43554	positive	MGI_C57BL6J_6095836	Gm47101	ENSEMBL:ENSMUSG00000112073	MGI:6095836	lncRNA gene	predicted gene, 47101
10	pseudogene	102.46020	102.46114	positive	MGI_C57BL6J_5504103	Gm26988	ENSEMBL:ENSMUSG00000098139	MGI:5504103	pseudogene	predicted gene, 26988
10	gene	102.48176	102.49049	negative	MGI_C57BL6J_1328351	Nts	NCBI_Gene:67405,ENSEMBL:ENSMUSG00000019890	MGI:1328351	protein coding gene	neurotensin
10	gene	102.51222	102.54974	positive	MGI_C57BL6J_2384307	Rassf9	NCBI_Gene:237504,ENSEMBL:ENSMUSG00000044921	MGI:2384307	protein coding gene	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
10	pseudogene	102.68307	102.68331	negative	MGI_C57BL6J_6095904	Gm47142	ENSEMBL:ENSMUSG00000112221	MGI:6095904	pseudogene	predicted gene, 47142
10	gene	102.68327	102.69457	positive	MGI_C57BL6J_6095905	Gm47143	ENSEMBL:ENSMUSG00000112845	MGI:6095905	lncRNA gene	predicted gene, 47143
10	pseudogene	102.76598	102.83866	positive	MGI_C57BL6J_3647142	Gm5175	NCBI_Gene:382413,ENSEMBL:ENSMUSG00000112046	MGI:3647142	pseudogene	predicted gene 5175
10	gene	102.99871	103.03021	negative	MGI_C57BL6J_104621	Alx1	NCBI_Gene:216285,ENSEMBL:ENSMUSG00000036602	MGI:104621	protein coding gene	ALX homeobox 1
10	gene	103.02899	103.03253	positive	MGI_C57BL6J_5593457	Gm34298	NCBI_Gene:102637507	MGI:5593457	protein coding gene	predicted gene, 34298
10	gene	103.02948	103.03034	negative	MGI_C57BL6J_4937855	Gm17028	ENSEMBL:ENSMUSG00000090638	MGI:4937855	lncRNA gene	predicted gene 17028
10	gene	103.04438	103.23633	negative	MGI_C57BL6J_1922228	Lrriq1	NCBI_Gene:74978,ENSEMBL:ENSMUSG00000019892	MGI:1922228	protein coding gene	leucine-rich repeats and IQ motif containing 1
10	gene	103.12124	103.12137	positive	MGI_C57BL6J_5455153	Gm25376	ENSEMBL:ENSMUSG00000077528	MGI:5455153	snoRNA gene	predicted gene, 25376
10	gene	103.20775	103.21344	negative	MGI_C57BL6J_6095941	Gm47164	ENSEMBL:ENSMUSG00000112622	MGI:6095941	unclassified gene	predicted gene, 47164
10	gene	103.36719	103.36937	negative	MGI_C57BL6J_2442852	6430590A10Rik	NCBI_Gene:100043277	MGI:2442852	lncRNA gene	RIKEN cDNA 6430590A10 gene
10	gene	103.36746	103.41938	positive	MGI_C57BL6J_2143484	Slc6a15	NCBI_Gene:103098,ENSEMBL:ENSMUSG00000019894	MGI:2143484	protein coding gene	solute carrier family 6 (neurotransmitter transporter), member 15
10	pseudogene	103.42989	103.43078	positive	MGI_C57BL6J_3643663	Gm8768	NCBI_Gene:667697,ENSEMBL:ENSMUSG00000112923	MGI:3643663	pseudogene	predicted gene 8768
10	gene	103.50736	103.56656	positive	MGI_C57BL6J_6096034	Gm47223	ENSEMBL:ENSMUSG00000112636	MGI:6096034	lncRNA gene	predicted gene, 47223
10	gene	103.51293	103.57169	positive	MGI_C57BL6J_6096031	Gm47221	ENSEMBL:ENSMUSG00000112319	MGI:6096031	lncRNA gene	predicted gene, 47221
10	pseudogene	103.56765	103.56805	positive	MGI_C57BL6J_6096030	Gm47220	ENSEMBL:ENSMUSG00000112644	MGI:6096030	pseudogene	predicted gene, 47220
10	pseudogene	103.56921	103.56940	negative	MGI_C57BL6J_6096033	Gm47222	ENSEMBL:ENSMUSG00000112839	MGI:6096033	pseudogene	predicted gene, 47222
10	pseudogene	103.58140	103.58239	negative	MGI_C57BL6J_5504038	Gm26923	ENSEMBL:ENSMUSG00000098173	MGI:5504038	pseudogene	predicted gene, 26923
10	gene	103.85627	103.85833	negative	MGI_C57BL6J_6096036	Gm47224	ENSEMBL:ENSMUSG00000112554	MGI:6096036	lncRNA gene	predicted gene, 47224
10	pseudogene	103.89354	103.89381	positive	MGI_C57BL6J_6096038	Gm47225	ENSEMBL:ENSMUSG00000112570	MGI:6096038	pseudogene	predicted gene, 47225
10	gene	103.95954	103.95965	positive	MGI_C57BL6J_5454920	Gm25143	ENSEMBL:ENSMUSG00000064630	MGI:5454920	snRNA gene	predicted gene, 25143
10	gene	103.98699	103.98791	positive	MGI_C57BL6J_6096039	Gm47226	ENSEMBL:ENSMUSG00000112281	MGI:6096039	lncRNA gene	predicted gene, 47226
10	pseudogene	104.08222	104.08234	positive	MGI_C57BL6J_6096041	Gm47227	ENSEMBL:ENSMUSG00000112403	MGI:6096041	pseudogene	predicted gene, 47227
10	pseudogene	104.09632	104.09676	negative	MGI_C57BL6J_6096042	Gm47228	ENSEMBL:ENSMUSG00000112382	MGI:6096042	pseudogene	predicted gene, 47228
10	gene	104.14299	104.15367	positive	MGI_C57BL6J_5434648	Gm21293	NCBI_Gene:100861880,ENSEMBL:ENSMUSG00000091779	MGI:5434648	protein coding gene	predicted gene, 21293
10	gene	104.15150	104.15396	positive	MGI_C57BL6J_3643573	Gm6763	NCBI_Gene:627488,ENSEMBL:ENSMUSG00000097427	MGI:3643573	protein coding gene	predicted gene 6763
10	gene	104.16001	104.16247	positive	MGI_C57BL6J_3643666	Gm8764	NCBI_Gene:667692,ENSEMBL:ENSMUSG00000097878	MGI:3643666	protein coding gene	predicted gene 8764
10	gene	104.16851	104.17098	positive	MGI_C57BL6J_5434659	Gm21304	NCBI_Gene:100861891,ENSEMBL:ENSMUSG00000097550	MGI:5434659	protein coding gene	predicted gene, 21304
10	gene	104.17702	104.17949	positive	MGI_C57BL6J_5434667	Gm21312	NCBI_Gene:100861901,ENSEMBL:ENSMUSG00000094144	MGI:5434667	protein coding gene	predicted gene, 21312
10	gene	104.18553	104.18800	positive	MGI_C57BL6J_5434121	Gm20765	NCBI_Gene:637578,ENSEMBL:ENSMUSG00000095022	MGI:5434121	protein coding gene	predicted gene, 20765
10	gene	104.19404	104.19652	positive	MGI_C57BL6J_3782524	Gm4340	NCBI_Gene:100043292,ENSEMBL:ENSMUSG00000090854	MGI:3782524	protein coding gene	predicted gene 4340
10	gene	104.22484	104.22490	negative	MGI_C57BL6J_5452116	Gm22339	ENSEMBL:ENSMUSG00000088343	MGI:5452116	snRNA gene	predicted gene, 22339
10	gene	104.28727	104.28738	positive	MGI_C57BL6J_5531149	Mir6411	miRBase:MI0021948,NCBI_Gene:102465222,ENSEMBL:ENSMUSG00000099264	MGI:5531149	miRNA gene	microRNA 6411
10	gene	104.47105	104.47121	negative	MGI_C57BL6J_5452722	Gm22945	ENSEMBL:ENSMUSG00000089182	MGI:5452722	snRNA gene	predicted gene, 22945
10	gene	104.86520	104.86531	negative	MGI_C57BL6J_5455299	Gm25522	ENSEMBL:ENSMUSG00000089019	MGI:5455299	snRNA gene	predicted gene, 25522
10	pseudogene	104.87421	104.87448	negative	MGI_C57BL6J_6097563	Gm48184	ENSEMBL:ENSMUSG00000112044	MGI:6097563	pseudogene	predicted gene, 48184
10	gene	104.92649	104.93659	negative	MGI_C57BL6J_5623636	Gm40751	NCBI_Gene:105245274	MGI:5623636	lncRNA gene	predicted gene, 40751
10	gene	105.04027	105.04044	positive	MGI_C57BL6J_5455364	Gm25587	ENSEMBL:ENSMUSG00000064432	MGI:5455364	snRNA gene	predicted gene, 25587
10	gene	105.04029	105.04381	negative	MGI_C57BL6J_5623637	Gm40752	NCBI_Gene:105245275	MGI:5623637	lncRNA gene	predicted gene, 40752
10	gene	105.10282	105.10580	negative	MGI_C57BL6J_5623638	Gm40753	NCBI_Gene:105245276	MGI:5623638	lncRNA gene	predicted gene, 40753
10	gene	105.14021	105.14033	negative	MGI_C57BL6J_5455199	Gm25422	ENSEMBL:ENSMUSG00000077407	MGI:5455199	snoRNA gene	predicted gene, 25422
10	gene	105.14224	105.14294	negative	MGI_C57BL6J_5610225	Gm36997	ENSEMBL:ENSMUSG00000103775	MGI:5610225	unclassified gene	predicted gene, 36997
10	gene	105.18766	105.57448	negative	MGI_C57BL6J_1914057	Tmtc2	NCBI_Gene:278279,ENSEMBL:ENSMUSG00000036019	MGI:1914057	protein coding gene	transmembrane and tetratricopeptide repeat containing 2
10	gene	105.34025	105.34231	positive	MGI_C57BL6J_6097597	Gm48206	ENSEMBL:ENSMUSG00000112193	MGI:6097597	unclassified gene	predicted gene, 48206
10	gene	105.37734	105.37748	negative	MGI_C57BL6J_6097595	Gm48205	ENSEMBL:ENSMUSG00000112176	MGI:6097595	unclassified gene	predicted gene, 48205
10	gene	105.39250	105.39429	negative	MGI_C57BL6J_6097591	Gm48203	ENSEMBL:ENSMUSG00000112512	MGI:6097591	unclassified gene	predicted gene, 48203
10	gene	105.44085	105.45253	negative	MGI_C57BL6J_5825878	Gm46241	NCBI_Gene:108167831	MGI:5825878	lncRNA gene	predicted gene, 46241
10	pseudogene	105.50580	105.50860	negative	MGI_C57BL6J_3783108	Gm15666	NCBI_Gene:100416011,ENSEMBL:ENSMUSG00000084399	MGI:3783108	pseudogene	predicted gene 15666
10	gene	105.51468	105.51665	negative	MGI_C57BL6J_6097593	Gm48204	ENSEMBL:ENSMUSG00000112900	MGI:6097593	unclassified gene	predicted gene, 48204
10	pseudogene	105.52046	105.52064	positive	MGI_C57BL6J_3783106	Gm15664	ENSEMBL:ENSMUSG00000089904	MGI:3783106	pseudogene	predicted gene 15664
10	gene	105.52404	105.52636	negative	MGI_C57BL6J_1926067	4930588G05Rik	NA	NA	unclassified gene	RIKEN cDNA 4930588G05 gene
10	gene	105.53298	105.53449	negative	MGI_C57BL6J_6097599	Gm48207	ENSEMBL:ENSMUSG00000112571	MGI:6097599	unclassified gene	predicted gene, 48207
10	gene	105.57395	105.58387	positive	MGI_C57BL6J_3783105	Gm15663	NCBI_Gene:327812,ENSEMBL:ENSMUSG00000085282	MGI:3783105	lncRNA gene	predicted gene 15663
10	gene	105.76318	105.84138	negative	MGI_C57BL6J_3041259	Mettl25	NCBI_Gene:216292,ENSEMBL:ENSMUSG00000036009	MGI:3041259	protein coding gene	methyltransferase like 25
10	gene	105.80409	105.80420	negative	MGI_C57BL6J_4421928	n-R5s80	ENSEMBL:ENSMUSG00000084545	MGI:4421928	rRNA gene	nuclear encoded rRNA 5S 80
10	gene	105.80654	105.80887	negative	MGI_C57BL6J_6097740	Gm48298	ENSEMBL:ENSMUSG00000112820	MGI:6097740	unclassified gene	predicted gene, 48298
10	gene	105.83828	105.83964	negative	MGI_C57BL6J_1917182	2810004I08Rik	NA	NA	unclassified gene	RIKEN cDNA 2810004I08 gene
10	gene	105.84107	105.84783	positive	MGI_C57BL6J_1289302	Ccdc59	NCBI_Gene:52713,ENSEMBL:ENSMUSG00000019897	MGI:1289302	protein coding gene	coiled-coil domain containing 59
10	gene	105.92961	105.92974	negative	MGI_C57BL6J_5454014	Gm24237	ENSEMBL:ENSMUSG00000088415	MGI:5454014	snoRNA gene	predicted gene, 24237
10	gene	106.05596	106.05608	negative	MGI_C57BL6J_5455119	Gm25342	ENSEMBL:ENSMUSG00000088084	MGI:5455119	snoRNA gene	predicted gene, 25342
10	pseudogene	106.06586	106.06679	positive	MGI_C57BL6J_3643770	Gm8796	NCBI_Gene:667758,ENSEMBL:ENSMUSG00000111914	MGI:3643770	pseudogene	predicted gene 8796
10	gene	106.07423	106.07908	positive	MGI_C57BL6J_6097833	Gm48363	ENSEMBL:ENSMUSG00000112034	MGI:6097833	unclassified gene	predicted gene, 48363
10	pseudogene	106.16678	106.16926	negative	MGI_C57BL6J_6097853	Gm48376	ENSEMBL:ENSMUSG00000112668	MGI:6097853	pseudogene	predicted gene, 48376
10	gene	106.18302	106.18389	positive	MGI_C57BL6J_6097854	Gm48377	ENSEMBL:ENSMUSG00000112523	MGI:6097854	unclassified gene	predicted gene, 48377
10	pseudogene	106.19234	106.19279	negative	MGI_C57BL6J_3643034	Rps15a-ps1	NCBI_Gene:639162,ENSEMBL:ENSMUSG00000056877	MGI:3643034	pseudogene	ribosomal protein S15A, pseudogene 1
10	pseudogene	106.35832	106.35865	positive	MGI_C57BL6J_6097857	Gm48379	ENSEMBL:ENSMUSG00000112520	MGI:6097857	pseudogene	predicted gene, 48379
10	pseudogene	106.44440	106.44510	positive	MGI_C57BL6J_6097858	Gm48380	ENSEMBL:ENSMUSG00000112066	MGI:6097858	pseudogene	predicted gene, 48380
10	gene	106.46694	106.47077	negative	MGI_C57BL6J_3697434	C230021G24Rik	ENSEMBL:ENSMUSG00000097869	MGI:3697434	lncRNA gene	RIKEN cDNA C230021G24 gene
10	gene	106.47027	106.93595	positive	MGI_C57BL6J_2443834	Ppfia2	NCBI_Gene:327814,ENSEMBL:ENSMUSG00000053825	MGI:2443834	protein coding gene	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
10	pseudogene	106.50271	106.50337	positive	MGI_C57BL6J_3031390	Olfr1556-ps1	NCBI_Gene:259137,ENSEMBL:ENSMUSG00000108029	MGI:3031390	pseudogene	olfactory receptor 1556, pseudogene 1
10	gene	106.55519	106.60248	negative	MGI_C57BL6J_1923083	4930532I03Rik	NCBI_Gene:75833,ENSEMBL:ENSMUSG00000112201	MGI:1923083	lncRNA gene	RIKEN cDNA 4930532I03 gene
10	pseudogene	106.75381	106.75491	negative	MGI_C57BL6J_5010033	Gm17848	NCBI_Gene:100415977	MGI:5010033	pseudogene	predicted gene, 17848
10	gene	106.93352	106.93595	negative	MGI_C57BL6J_3028041	B230114P17Rik	NA	NA	unclassified gene	RIKEN cDNA B230114P17 gene
10	gene	106.93352	107.12367	negative	MGI_C57BL6J_2685720	Acss3	NCBI_Gene:380660,ENSEMBL:ENSMUSG00000035948	MGI:2685720	protein coding gene	acyl-CoA synthetase short-chain family member 3
10	pseudogene	106.94930	106.95017	positive	MGI_C57BL6J_5011192	Gm19007	NCBI_Gene:100418113,ENSEMBL:ENSMUSG00000112443	MGI:5011192	pseudogene	predicted gene, 19007
10	gene	107.03969	107.04319	negative	MGI_C57BL6J_2442573	E030002G19Rik	NA	NA	unclassified gene	RIKEN cDNA E030002G19 gene
10	pseudogene	107.05852	107.05935	negative	MGI_C57BL6J_5010225	Gm18040	NCBI_Gene:100416324,ENSEMBL:ENSMUSG00000112849	MGI:5010225	pseudogene	predicted gene, 18040
10	pseudogene	107.06104	107.06198	negative	MGI_C57BL6J_5011366	Gm19181	NCBI_Gene:100418393,ENSEMBL:ENSMUSG00000112863	MGI:5011366	pseudogene	predicted gene, 19181
10	gene	107.13697	107.13706	positive	MGI_C57BL6J_5454522	Gm24745	ENSEMBL:ENSMUSG00000088465	MGI:5454522	snoRNA gene	predicted gene, 24745
10	gene	107.19991	107.20578	negative	MGI_C57BL6J_5588833	Gm29674	NCBI_Gene:432500,ENSEMBL:ENSMUSG00000112466	MGI:5588833	lncRNA gene	predicted gene, 29674
10	gene	107.27160	107.42515	positive	MGI_C57BL6J_2135609	Lin7a	NCBI_Gene:108030,ENSEMBL:ENSMUSG00000019906	MGI:2135609	protein coding gene	lin-7 homolog A (C. elegans)
10	gene	107.33577	107.33595	positive	MGI_C57BL6J_1925661	3110033O22Rik	NA	NA	unclassified gene	RIKEN cDNA 3110033O22 gene
10	gene	107.43642	107.43736	negative	MGI_C57BL6J_5611345	Gm38117	ENSEMBL:ENSMUSG00000102934	MGI:5611345	unclassified gene	predicted gene, 38117
10	gene	107.48041	107.48053	positive	MGI_C57BL6J_5690795	Gm44403	ENSEMBL:ENSMUSG00000104558	MGI:5690795	miRNA gene	predicted gene, 44403
10	gene	107.48291	107.48693	negative	MGI_C57BL6J_97252	Myf5	NCBI_Gene:17877,ENSEMBL:ENSMUSG00000000435	MGI:97252	protein coding gene	myogenic factor 5
10	gene	107.49285	107.49474	negative	MGI_C57BL6J_97253	Myf6	NCBI_Gene:17878,ENSEMBL:ENSMUSG00000035923	MGI:97253	protein coding gene	myogenic factor 6
10	gene	107.49527	107.65940	positive	MGI_C57BL6J_5595336	Gm36177	NCBI_Gene:102639996	MGI:5595336	lncRNA gene	predicted gene, 36177
10	gene	107.51436	107.72008	negative	MGI_C57BL6J_1096349	Ptprq	NCBI_Gene:237523,ENSEMBL:ENSMUSG00000035916	MGI:1096349	protein coding gene	protein tyrosine phosphatase, receptor type, Q
10	gene	107.76053	107.91229	negative	MGI_C57BL6J_3647600	Otogl	NCBI_Gene:628870,ENSEMBL:ENSMUSG00000091455	MGI:3647600	protein coding gene	otogelin-like
10	gene	107.94665	107.97783	positive	MGI_C57BL6J_5588844	Gm29685	NCBI_Gene:628877,ENSEMBL:ENSMUSG00000112910	MGI:5588844	lncRNA gene	predicted gene, 29685
10	pseudogene	108.14169	108.14243	negative	MGI_C57BL6J_6097298	Gm47999	ENSEMBL:ENSMUSG00000112401	MGI:6097298	pseudogene	predicted gene, 47999
10	gene	108.15050	108.16044	negative	MGI_C57BL6J_5623639	Gm40754	NCBI_Gene:105245277	MGI:5623639	lncRNA gene	predicted gene, 40754
10	gene	108.16183	108.28448	positive	MGI_C57BL6J_1309528	Ppp1r12a	NCBI_Gene:17931,ENSEMBL:ENSMUSG00000019907	MGI:1309528	protein coding gene	protein phosphatase 1, regulatory subunit 12A
10	gene	108.17981	108.18492	positive	MGI_C57BL6J_2443885	C430003N24Rik	NA	NA	unclassified gene	RIKEN cDNA C430003N24 gene
10	gene	108.32237	108.33273	negative	MGI_C57BL6J_5623640	Gm40755	NCBI_Gene:105245278	MGI:5623640	protein coding gene	predicted gene, 40755
10	gene	108.33212	108.41439	positive	MGI_C57BL6J_2149961	Pawr	NCBI_Gene:114774,ENSEMBL:ENSMUSG00000035873	MGI:2149961	protein coding gene	PRKC, apoptosis, WT1, regulator
10	gene	108.36366	108.36380	positive	MGI_C57BL6J_5452882	Gm23105	ENSEMBL:ENSMUSG00000065653	MGI:5452882	snoRNA gene	predicted gene, 23105
10	gene	108.41725	108.45330	positive	MGI_C57BL6J_5595442	Gm36283	NCBI_Gene:102640148,ENSEMBL:ENSMUSG00000112532	MGI:5595442	lncRNA gene	predicted gene, 36283
10	gene	108.42807	108.42816	positive	MGI_C57BL6J_5455368	Gm25591	ENSEMBL:ENSMUSG00000093762	MGI:5455368	miRNA gene	predicted gene, 25591
10	gene	108.44432	108.44481	negative	MGI_C57BL6J_5595599	Gm36440	NCBI_Gene:102640357	MGI:5595599	lncRNA gene	predicted gene, 36440
10	gene	108.45576	108.51207	positive	MGI_C57BL6J_5595760	Gm36601	NCBI_Gene:105245279	MGI:5595760	lncRNA gene	predicted gene, 36601
10	pseudogene	108.48265	108.48299	positive	MGI_C57BL6J_6096432	Gm47466	ENSEMBL:ENSMUSG00000112065	MGI:6096432	pseudogene	predicted gene, 47466
10	gene	108.49765	109.01098	negative	MGI_C57BL6J_99667	Syt1	NCBI_Gene:20979,ENSEMBL:ENSMUSG00000035864	MGI:99667	protein coding gene	synaptotagmin I
10	gene	108.54576	108.54794	negative	MGI_C57BL6J_2444139	A830054O04Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA A830054O04 gene
10	gene	108.63700	108.64008	negative	MGI_C57BL6J_1925527	5330428N10Rik	NA	NA	unclassified gene	RIKEN cDNA 5330428N10 gene
10	gene	108.68501	108.68579	negative	MGI_C57BL6J_1924638	C030018G05Rik	NA	NA	unclassified gene	RIKEN cDNA C030018G05 gene
10	gene	108.69876	108.70016	negative	MGI_C57BL6J_3647286	Gm5136	NCBI_Gene:368203,ENSEMBL:ENSMUSG00000112039	MGI:3647286	protein coding gene	predicted gene 5136
10	gene	108.71151	108.71228	negative	MGI_C57BL6J_1924887	C030044C18Rik	NA	NA	unclassified gene	RIKEN cDNA C030044C18 gene

Additive covariates

Significance thresholds

operm <- scan1perm(pr.qc, covars["rz.age"], model="normal", addcovar=addcovar, n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	3.402448	6.729276
0.05	3.229013	6.705621
0.1	3.011679	6.674687

Genome-wide scan

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
#par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - ICI vs. EOI (with additive covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')

  }
}


print("with no kinship")

[1] “with no kinship”

outfa <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar)

plot_lod(outfa,gm$gmap)

print("with normal kinship")

[1] “with normal kinship”

outka <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, kinship=kinship)

plot_lod(outka,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

outa <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, kinship=K)

plot_lod(outa,gm$gmap)

out = outa

print(paste0("number of samples in analysis = ", as.data.frame(attributes(out)$sample_size)[1,]))

[1] “number of samples in analysis = 267”

LOD peaks

Centimorgan (cM)

peaks<-find_peaks(out, gm$gmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)
if(nrow(peaks) > 0){
peaks$marker <- find_marker(gm$gmap, chr=peaks$chr,pos=peaks$pos)
names(peaks)[2] <- c("phenotype")
peaks <- peaks[-1]

rownames(peaks) <- NULL
print(kable(peaks, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

#plot only peak chromosomes

plot_lod_chr<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (with additive covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()

  }
}


} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 3.22901302583048 [autosomes]/6.7056207215653 [x-chromosome]”

if(nrow(peaks) < 50 & nrow(peaks) > 0){

for(i in unique(peaks$chr)){
#for (i in 1:nrow(peaks)){
  #plot_lod_chr(out,gm$gmap, peaks$chr[i])
  plot_lod_chr(out,gm$gmap, i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 3.22901302583048 [autosomes]/6.7056207215653 [x-chromosome]”

Megabase (MB)

peaks_mba<-find_peaks(out, gm$pmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)
if(nrow(peaks) > 0){
peaks_mba$marker <- find_marker(gm$pmap, chr=peaks_mba$chr,pos=peaks_mba$pos)
names(peaks_mba)[2] <- c("phenotype")
peaks_mba <- peaks_mba[-1]

rownames(peaks_mba) <- NULL
print(kable(peaks_mba, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

plot_lod_chr_mb<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (with additive covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 3.22901302583048 [autosomes]/6.7056207215653 [x-chromosome]”

if(nrow(peaks_mba) < 50 & nrow(peaks_mba) > 0){

for(i in unique(peaks_mba$chr)){
#for (i in 1:nrow(peaks_mba)){
  #plot_lod_chr_mb(out,gm$pmap, peaks_mba$chr[i])
  plot_lod_chr_mb(out,gm$pmap,i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 3.22901302583048 [autosomes]/6.7056207215653 [x-chromosome]”

QTL effects

For each peak LOD location we give a list of gene

if(nrow(peaks) < 50 & nrow(peaks) > 0){
for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE)
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(g, covars[,peaks$phenotype[i]], ylab=peaks$phenotype[i], sort=FALSE)
  title(main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," )"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  pr_sub <- pull_genoprobint(pr.qc, gm$gmap, chr, c(peaks$ci_lo[i], peaks$ci_hi[i]))
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  #coeff <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  #coeff_sub <- scan1coef(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  blup <- scan1blup(pr.qc[,chr], covars[peaks$phenotype[i]])
  blup_sub <- scan1blup(pr_sub[,chr], covars[peaks$phenotype[i]])

  write.csv(as.data.frame(blup_sub), paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-additive.covariates_blup_sub_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_0.csv"), quote=F)

  #plot_coef(coeff, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1coeff; positions in cM] )")
  #     )

  #plot_coef(coeff_sub, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1coeff; positions in cM] ) ")
  #     )


  plot_coef(blup, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," [scan1blup; positions in cM] )")
       )

  plot_coef(blup_sub, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i],"; 1.5 LOD drop interval [scan1blup; positions in cM] )")
       )


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  write.csv(genesgss, file=paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-additive.covariates_genes_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_0.csv"), quote=F)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  #genesgss <- 
  #table <- 
  #genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")] %>%
  #kable(escape = F,align = c("ccccccccccc")) %>%
  #kable_styling("striped", full_width = T) #%>% 
  #cat #%>%
  #column_spec(1, bold=TRUE)
#
  #print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], escape = F,align = c("ccccccccccc")))

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  #table
  

}
} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 3.22901302583048 [autosomes]/6.7056207215653 [x-chromosome]”

Interactive term

Significance thresholds

operm <- scan1perm(pr.qc, covars["rz.age"], model="normal", addcovar=addcovar, intcovar=addcovar, n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	8.180585	7.720004
0.05	8.032968	7.490913
0.1	7.847986	7.191335

Genome-wide scan

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
#par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - ICI vs. EOI (with interactive covariate) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')

  }
}


print("with no kinship")

[1] “with no kinship”

outfi <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar)

plot_lod(outfi,gm$gmap)

outf.new <- outfi-outfa

plot_lod(outf.new,gm$gmap)

print("with normal kinship")

[1] “with normal kinship”

outki <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar, kinship=kinship)

plot_lod(outki,gm$gmap)

outk.new <- outki-outka

plot_lod(outk.new,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

outi <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar, kinship=K)

plot_lod(outi,gm$gmap)

outi.new <- outi-outa

plot_lod(outi.new,gm$gmap)

out = outi.new


print(paste0("number of samples in analysis = ", as.data.frame(attributes(out)$sample_size)[1,]))

[1] “number of samples in analysis = 267”

LOD peaks

Centimorgan (cM)

peaks<-find_peaks(out, gm$gmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)
if(nrow(peaks) > 0){
peaks$marker <- find_marker(gm$gmap, chr=peaks$chr,pos=peaks$pos)
names(peaks)[2] <- c("phenotype")
peaks <- peaks[-1]

rownames(peaks) <- NULL
print(kable(peaks, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

#plot only peak chromosomes

plot_lod_chr<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (with interactive covariate) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()

  }
}


} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 8.03296795029474 [autosomes]/7.49091276139169 [x-chromosome]”

if(nrow(peaks) < 50 & nrow(peaks) > 0){

for(i in unique(peaks$chr)){
#for (i in 1:nrow(peaks)){
  #plot_lod_chr(out,gm$gmap, peaks$chr[i])
  plot_lod_chr(out,gm$gmap, i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 8.03296795029474 [autosomes]/7.49091276139169 [x-chromosome]”

Megabase (MB)

peaks_mba<-find_peaks(out, gm$pmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)
if(nrow(peaks) > 0){
peaks_mba$marker <- find_marker(gm$pmap, chr=peaks_mba$chr,pos=peaks_mba$pos)
names(peaks_mba)[2] <- c("phenotype")
peaks_mba <- peaks_mba[-1]

rownames(peaks_mba) <- NULL
print(kable(peaks_mba, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

plot_lod_chr_mb<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (with interactive covariate) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 8.03296795029474 [autosomes]/7.49091276139169 [x-chromosome]”

if(nrow(peaks_mba) < 50 & nrow(peaks_mba) > 0){

for(i in unique(peaks_mba$chr)){
#for (i in 1:nrow(peaks_mba)){
  #plot_lod_chr_mb(out,gm$pmap, peaks_mba$chr[i])
  plot_lod_chr_mb(out,gm$pmap,i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 8.03296795029474 [autosomes]/7.49091276139169 [x-chromosome]”

QTL effects

For each peak LOD location we give a list of gene

if(nrow(peaks) < 50 & nrow(peaks) > 0){
for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE)
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(g, covars[,peaks$phenotype[i]], ylab=peaks$phenotype[i], sort=FALSE)
  title(main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," )"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  pr_sub <- pull_genoprobint(pr.qc, gm$gmap, chr, c(peaks$ci_lo[i], peaks$ci_hi[i]))
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  #coeff <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  #coeff_sub <- scan1coef(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  blup <- scan1blup(pr.qc[,chr], covars[peaks$phenotype[i]])
  blup_sub <- scan1blup(pr_sub[,chr], covars[peaks$phenotype[i]])

  write.csv(as.data.frame(blup_sub), paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-interactive.covariate_blup_sub_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_0.csv"), quote=F)

  #plot_coef(coeff, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1coeff; positions in cM] )")
  #     )

  #plot_coef(coeff_sub, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1coeff; positions in cM] ) ")
  #     )


  plot_coef(blup, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," [scan1blup; positions in cM] )")
       )

  plot_coef(blup_sub, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i],"; 1.5 LOD drop interval [scan1blup; positions in cM] )")
       )


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  write.csv(genesgss, file=paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-interactive.covariate_genes_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_0.csv"), quote=F)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  #genesgss <- 
  #table <- 
  #genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")] %>%
  #kable(escape = F,align = c("ccccccccccc")) %>%
  #kable_styling("striped", full_width = T) #%>% 
  #cat #%>%
  #column_spec(1, bold=TRUE)
#
  #print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], escape = F,align = c("ccccccccccc")))

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  #table
  

}
} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 8.03296795029474 [autosomes]/7.49091276139169 [x-chromosome]”

Session information

R version 3.6.2 (2019-12-12)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Catalina 10.15.7

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] abind_1.4-5       qtl2_0.22         reshape2_1.4.4    ggplot2_3.3.5    
 [5] tibble_3.1.2      psych_2.0.7       readxl_1.3.1      cluster_2.1.0    
 [9] dplyr_1.0.8       optparse_1.6.6    rhdf5_2.28.1      mclust_5.4.6     
[13] tidyr_1.0.2       data.table_1.14.0 knitr_1.33        kableExtra_1.1.0 
[17] workflowr_1.6.2  

loaded via a namespace (and not attached):
 [1] httr_1.4.1        bit64_4.0.5       viridisLite_0.4.0 assertthat_0.2.1 
 [5] highr_0.9         blob_1.2.1        cellranger_1.1.0  yaml_2.2.1       
 [9] pillar_1.6.1      RSQLite_2.2.7     backports_1.2.1   lattice_0.20-38  
[13] glue_1.4.2        digest_0.6.27     promises_1.1.0    rvest_0.3.5      
[17] colorspace_2.0-2  htmltools_0.5.1.1 httpuv_1.5.2      plyr_1.8.6       
[21] pkgconfig_2.0.3   purrr_0.3.4       scales_1.1.1      webshot_0.5.2    
[25] getopt_1.20.3     later_1.0.0       git2r_0.26.1      generics_0.0.2   
[29] ellipsis_0.3.2    cachem_1.0.5      withr_2.4.2       cli_3.0.0        
[33] mnormt_1.5-7      magrittr_2.0.1    crayon_1.4.1      memoise_2.0.0    
[37] evaluate_0.14     fs_1.4.1          fansi_0.5.0       nlme_3.1-142     
[41] xml2_1.3.1        tools_3.6.2       hms_0.5.3         lifecycle_1.0.1  
[45] stringr_1.4.0     Rhdf5lib_1.6.3    munsell_0.5.0     compiler_3.6.2   
[49] rlang_1.0.2       grid_3.6.2        rstudioapi_0.13   rmarkdown_2.1    
[53] gtable_0.3.0      DBI_1.1.1         R6_2.5.0          fastmap_1.1.0    
[57] bit_4.0.4         utf8_1.2.1        rprojroot_1.3-2   readr_1.3.1      
[61] stringi_1.7.2     parallel_3.6.2    Rcpp_1.0.7        vctrs_0.3.8      
[65] tidyselect_1.1.2  xfun_0.24