Last updated: 2022-04-14

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Knit directory: Serreze-T1D_Workflow/

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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-11_peak.marker-UNC20090524_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00518911r_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00522922_lod.drop-1.5_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00529707r_lod.drop-1.5_5.batches_52.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4809586_lod.drop-1.5_5.batches_mis.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5277061_lod.drop-1.5_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5301460_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5309136_lod.drop-1.5_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5360055_lod.drop-1.5_5.batches_52.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_52.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5778977_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5808246_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5916997_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008193_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008193_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008209_lod.drop-1.5_5.batches_mis.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008229_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008229_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008234_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008234_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008242_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008260_lod.drop-1.5_5.batches_mis.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008271_lod.drop-1.5_5.batches_mis.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008281_lod.drop-1.5_5.batches_mis.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_52.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008338_lod.drop-1.5_5.batches_mis.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008363_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008363_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008379_lod.drop-1.5_5.batches_mis.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008409_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008432_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008609_lod.drop-1.5_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008614_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008627_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008659_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008725_lod.drop-1.5_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009066_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009067_lod.drop-1.5_5.batches_0.csv
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    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
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    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-UNCHS020443_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
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    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.probs.freq.removed.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.probs.freq.removed_sample.outliers.removed.csv
    Untracked:  data/ici.vs.pbs_scanone_5.batches.Rdata
    Untracked:  data/ici.vs.pbs_scanone_5.batches_mis.Rdata
    Untracked:  data/ici.vs.pbs_scanone_snpsqc_5.batches.Rdata
    Untracked:  data/ici.vs.pbs_scanone_snpsqc_5.batches_mis.Rdata
    Untracked:  data/ici.vs.pbs_scanone_snpsqc_dis_no-x_updated_5.batches.Rdata
    Untracked:  data/ici.vs.pbs_scanone_snpsqc_dis_no-x_updated_5.batches_mis.Rdata
    Untracked:  data/percent_missing_id_3.batches.RData
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    Untracked:  data/percent_missing_id_5.batches.RData
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    Untracked:  data/percent_missing_marker_5.batches.RData
    Untracked:  data/pheno.csv
    Untracked:  data/pheno_BC312.csv
    Untracked:  data/physical_map.csv
    Untracked:  data/physical_map_BC312.csv
    Untracked:  data/qc_info_bad_sample_3.batches.RData
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Unstaged changes:
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici.vs.eoi_snpsqc_dis_no-x_updated.Rmd
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
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    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/index_5.batches.Rmd
    Modified:   analysis/index_5.batches_additional.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


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Loading Data

load("data/gm_allqc_5.batches.RData")

#gm_allqc
gm=gm_allqc
gm
Object of class cross2 (crosstype "bc")

Total individuals              308
No. genotyped individuals      308
No. phenotyped individuals     308
No. with both geno & pheno     308

No. phenotypes                   1
No. covariates                   6
No. phenotype covariates         0

No. chromosomes                 20
Total markers                34537

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
2643 2629 1857 1890 1774 1941 1672 1627 1878 1176 1871 1300 1549 1578 1257  935 
  17   18   19    X 
 501  913 1014 4532 
#pr <- readRDS("data/serreze_probs_allqc.rds")
#pr <- readRDS("data/serreze_probs.rds")

##extracting animals with ici and eoi group status
miceinfo <- gm$covar[gm$covar$group == "EOI" | gm$covar$group == "ICI",]
table(miceinfo$group)

EOI ICI 
164 104 
mice.ids <- rownames(miceinfo)

gm <- gm[mice.ids]
gm
Object of class cross2 (crosstype "bc")

Total individuals              268
No. genotyped individuals      268
No. phenotyped individuals     268
No. with both geno & pheno     268

No. phenotypes                   1
No. covariates                   6
No. phenotype covariates         0

No. chromosomes                 20
Total markers                34537

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
2643 2629 1857 1890 1774 1941 1672 1627 1878 1176 1871 1300 1549 1578 1257  935 
  17   18   19    X 
 501  913 1014 4532 
table(gm$covar$group)

EOI ICI 
164 104 
gm.full <- gm



covars <- read_csv("data/covar_corrected.cleaned_ici.vs.eoi_5.batches_52.csv")
#removing any missing info
missing_ids <- covars[which(covars$"rz.age"==""),]$Mouse.ID
length(missing_ids)
[1] 1
missing_ids
[1] "NG01228-ICI"
if(length(missing_ids) != 0){
gm <- gm[paste0("-",as.character(missing_ids)),]
gm
table(gm$covar$group)

#keeping only mouseids in covars
covars <- covars[gm$covar$id,]
table(covars$group)
}

EOI ICI 
164 103 
#covars[covars$age.of.onset==0,]$age.of.onset <- ''


query_variants <- create_variant_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/cc_variants.sqlite")
query_genes <- create_gene_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/mouse_genes_mgi.sqlite")


##removing problmetic marker

gm <- drop_markers(gm, "UNCHS013106")

#pmap_interp = interp_map(map, gm$gmap, gm$pmap)
markers <- marker_names(gm)
gmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_5.batches/genetic_map.csv")
pmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_5.batches/physical_map.csv")
#mapdf <- merge(gmapdf,pmapdf, by=c("marker","chr"), all=T)
#rownames(mapdf) <- mapdf$marker
#mapdf <- mapdf[markers,]
#names(mapdf) <- c('marker','chr','gmapdf','pmapdf')
#mapdfnd <- mapdf[!duplicated(mapdf[c(2:3)]),]

pr.qc <- calc_genoprob(gm)

gm
Object of class cross2 (crosstype "bc")

Total individuals              267
No. genotyped individuals      267
No. phenotyped individuals     267
No. with both geno & pheno     267

No. phenotypes                   1
No. covariates                   6
No. phenotype covariates         0

No. chromosomes                 20
Total markers                34537

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
2643 2629 1857 1890 1774 1941 1672 1627 1878 1176 1871 1300 1549 1578 1257  935 
  17   18   19    X 
 501  913 1014 4532 

Preparing necessary info

covars$rz.age <- as.numeric(covars$rz.age)
Xcovar <- get_x_covar(gm)
addcovar = model.matrix(~ICI.vs.EOI, data = covars)[,-1]
#addcovar.i = model.matrix(~ICI.vs.EOI, data = covars)[,-1]

K <- calc_kinship(pr.qc, type = "loco")
#heatmap(K[[1]])
K.overall <- calc_kinship(pr.qc, type = "overall")
#heatmap(K.overall)
kinship <- calc_kinship(pr.qc)
heatmap(kinship)

No additive covariates

Significance thresholds

operm <- scan1perm(pr.qc, covars["rz.age"], model="normal", n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)
significance.level autosomes X
0.01 3.486372 4.774895
0.05 3.428501 4.647653
0.1 3.355982 4.481263

Genome-wide scan

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
#par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - ICI vs. EOI (no covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')

  }
}


print("with no kinship")

[1] “with no kinship”

outf <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal")

plot_lod(outf,gm$gmap)

print("with normal kinship")

[1] “with normal kinship”

outk <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", kinship=kinship)

plot_lod(outk,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

out <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", kinship=K)

plot_lod(out,gm$gmap)

print(paste0("number of samples in analysis = ", as.data.frame(attributes(out)$sample_size)[1,]))

[1] “number of samples in analysis = 267”

LOD peaks

Centimorgan (cM)

peaks<-find_peaks(out, gm$gmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)

if(nrow(peaks) > 0){
peaks$marker <- find_marker(gm$gmap, chr=peaks$chr,pos=peaks$pos)
names(peaks)[2] <- c("phenotype")
peaks <- peaks[-1]

rownames(peaks) <- NULL
print(kable(peaks, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

#plot only peak chromosomes

plot_lod_chr<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (no covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()

  }
}


} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}
phenotype chr pos lod ci_lo ci_hi marker
rz.age 3 2.28000 5.043745 2.010 2.309 JAX00514662
rz.age 3 5.56200 6.910605 5.079 5.822 UNC4813186
rz.age 3 6.85700 7.094779 6.356 7.572 UNC4836550
rz.age 3 7.69400 7.702394 7.603 10.190 UNCHS008182
rz.age 3 10.81500 9.379513 10.282 10.970 UNC4912039
rz.age 3 11.39100 9.379516 10.982 11.971 UNC4924377
rz.age 3 12.29000 9.280016 12.254 12.989 UNCHS008286
rz.age 3 13.56900 9.373639 13.052 15.109 UNC4956618
rz.age 3 16.36100 9.286749 15.290 16.966 UNC5006948
rz.age 3 18.74600 11.185850 17.482 19.077 UNC5083168
rz.age 3 20.70900 10.948366 20.613 20.774 UNCJPD001246
rz.age 3 21.11100 10.438840 20.784 21.549 UNCHS008595
rz.age 3 21.68733 10.121892 21.580 22.187 UNCHS008613
rz.age 3 23.13700 9.607665 22.489 23.199 UNC5262472
rz.age 3 25.66500 9.687412 23.380 27.894 UNC5300878
rz.age 3 29.00200 9.483694 28.262 29.026 UNCHS008815
rz.age 3 29.06600 9.483566 29.027 30.167 UNC5360055
rz.age 3 31.80500 8.855733 30.203 32.529 UNC5454839
rz.age 3 32.82300 7.920116 32.607 33.376 ICR1338
rz.age 3 33.71800 8.005633 33.391 33.741 ICR2047
rz.age 3 34.83500 8.078228 33.825 35.168 UNCJPD001341
rz.age 3 36.06800 7.983329 36.023 37.404 UNC5645844
rz.age 3 37.53200 6.318534 37.408 37.640 UNC5679155
rz.age 3 39.17200 6.580030 37.874 39.804 JAX00529707
rz.age 3 40.06700 6.242010 40.024 40.390 UNCHS009383
rz.age 3 42.34600 5.685666 40.519 44.496 UNC5808246
rz.age 3 46.13600 4.089132 45.825 46.481 UNCHS009693
rz.age 3 46.74000 4.175587 46.556 46.882 sanger2623
rz.age 3 48.38000 4.299015 47.611 51.223 UNC5945286
rz.age 3 52.87800 3.624985 51.460 56.964 JAX00112499
rz.age 3 58.27200 3.449250 58.043 63.387 UNC6227106
if(nrow(peaks) < 50 & nrow(peaks) > 0){

for(i in unique(peaks$chr)){
#for (i in 1:nrow(peaks)){
  #plot_lod_chr(out,gm$gmap, peaks$chr[i])
  plot_lod_chr(out,gm$gmap, i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

Megabase (MB)

peaks_mba<-find_peaks(out, gm$pmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)
if(nrow(peaks) > 0){
peaks_mba$marker <- find_marker(gm$pmap, chr=peaks_mba$chr,pos=peaks_mba$pos)
names(peaks_mba)[2] <- c("phenotype")
peaks_mba <- peaks_mba[-1]

rownames(peaks_mba) <- NULL
print(kable(peaks_mba, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

  plot_lod_chr_mb<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (no covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}
phenotype chr pos lod ci_lo ci_hi marker
rz.age 3 9.258869 5.043745 7.129186 9.402052 JAX00514662
rz.age 3 19.486223 6.910605 18.314568 19.729641 UNC4813186
rz.age 3 21.048602 7.094779 20.305499 22.035726 UNC4836550
rz.age 3 22.709183 7.702394 22.177798 25.286239 UNCHS008182
rz.age 3 27.036217 9.379513 25.426933 27.557911 UNCHS008242
rz.age 3 28.019689 9.379516 27.583922 28.411523 UNC4924377
rz.age 3 28.700046 9.280016 28.647890 30.203812 UNCHS008286
rz.age 3 30.369809 9.373639 30.221767 31.081568 UNC4956618
rz.age 3 33.900624 9.286749 31.479710 34.955875 UNC5006948
rz.age 3 38.948083 11.185850 36.524146 39.720506 UNC5083168
rz.age 3 46.369552 10.948366 46.093688 46.773347 UNCJPD001246
rz.age 3 47.991891 10.438840 47.267935 48.887661 UNCHS008595
rz.age 3 49.609061 10.121892 48.950852 51.245920 UNCHS008613
rz.age 3 52.227835 9.607665 51.504201 52.288687 UNC5262472
rz.age 3 54.787025 9.687412 52.466515 57.567476 UNC5300878
rz.age 3 59.186472 9.483694 58.021842 59.322589 UNCHS008815
rz.age 3 59.677691 9.483566 59.333869 64.965863 UNC5360055
rz.age 3 68.536022 8.855733 65.480179 70.648825 UNC5454839
rz.age 3 73.269966 7.920116 72.338635 73.730105 ICR1338
rz.age 3 75.230274 8.005633 73.742144 75.518981 ICR5347
rz.age 3 78.195206 8.078228 75.789940 79.931821 UNCJPD001341
rz.age 3 81.949482 7.983329 81.864954 83.879902 UNC5645844
rz.age 3 84.296456 6.318534 83.892546 84.573833 UNC5679155
rz.age 3 89.537778 6.580030 86.634703 90.662415 JAX00529707r
rz.age 3 91.300118 6.242010 90.812476 93.632371 UNCHS009383
rz.age 3 97.884162 5.685666 93.882933 102.026335 UNC5808246
rz.age 3 105.105036 4.089132 104.826451 106.170686 UNCHS009693
rz.age 3 107.470377 4.175587 106.942181 108.045878 sanger2623q
rz.age 3 109.677215 4.299015 108.888517 117.883783 UNC5945286
rz.age 3 121.181495 3.624985 118.208381 128.488205 JAX00112499
rz.age 3 129.551327 3.449250 129.469583 136.918958 UNC6227106
if(nrow(peaks_mba) < 50 & nrow(peaks_mba) > 0){

for(i in unique(peaks_mba$chr)){
#for (i in 1:nrow(peaks_mba)){
  #plot_lod_chr_mb(out,gm$pmap, peaks_mba$chr[i])
  plot_lod_chr_mb(out,gm$pmap,i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

QTL effects

For each peak LOD location we give a list of gene

if(nrow(peaks) < 50 & nrow(peaks) > 0){
for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE)
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(g, covars[,peaks$phenotype[i]], ylab=peaks$phenotype[i], sort=FALSE)
  title(main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," )"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  pr_sub <- pull_genoprobint(pr.qc, gm$gmap, chr, c(peaks$ci_lo[i], peaks$ci_hi[i]))
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  #coeff <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  #coeff_sub <- scan1coef(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  blup <- scan1blup(pr.qc[,chr], covars[peaks$phenotype[i]])
  blup_sub <- scan1blup(pr_sub[,chr], covars[peaks$phenotype[i]])

  write.csv(as.data.frame(blup_sub), paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-no.covariates_blup_sub_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_52.csv"), quote=F)

  #plot_coef(coeff, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1coeff; positions in cM] )")
  #     )

  #plot_coef(coeff_sub, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1coeff; positions in cM] ) ")
  #     )


  plot_coef(blup, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," [scan1blup; positions in cM] )")
       )

  plot_coef(blup_sub, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i],"; 1.5 LOD drop interval [scan1blup; positions in cM] )")
       )


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  write.csv(genesgss, file=paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-no.covariates_genes_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_52.csv"), quote=F)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  #genesgss <- 
  #table <- 
  #genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")] %>%
  #kable(escape = F,align = c("ccccccccccc")) %>%
  #kable_styling("striped", full_width = T) #%>% 
  #cat #%>%
  #column_spec(1, bold=TRUE)
#
  #print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], escape = F,align = c("ccccccccccc")))

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  #table
  

}

} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 pseudogene 7.192775 7.193210 negative MGI_C57BL6J_3647094 Gm8823 NCBI_Gene:667801,ENSEMBL:ENSMUSG00000104274 MGI:3647094 pseudogene predicted gene 8823
3 gene 7.366604 7.445366 positive MGI_C57BL6J_104747 Pkia NCBI_Gene:18767,ENSEMBL:ENSMUSG00000027499 MGI:104747 protein coding gene protein kinase inhibitor, alpha
3 gene 7.408504 7.410589 positive MGI_C57BL6J_3027006 C530038A18Rik NA NA unclassified gene RIKEN cDNA C530038A18 gene
3 pseudogene 7.418340 7.418459 negative MGI_C57BL6J_5611146 Gm37918 ENSEMBL:ENSMUSG00000103274 MGI:5611146 pseudogene predicted gene, 37918
3 pseudogene 7.454521 7.455539 positive MGI_C57BL6J_3647097 Gm8826 NCBI_Gene:667807,ENSEMBL:ENSMUSG00000102268 MGI:3647097 pseudogene predicted gene 8826
3 gene 7.501904 7.502020 negative MGI_C57BL6J_5453369 Gm23592 ENSEMBL:ENSMUSG00000088484 MGI:5453369 snoRNA gene predicted gene, 23592
3 gene 7.503415 7.553848 positive MGI_C57BL6J_1914556 Zc2hc1a NCBI_Gene:67306,ENSEMBL:ENSMUSG00000043542 MGI:1914556 protein coding gene zinc finger, C2HC-type containing 1A
3 gene 7.569994 7.613760 negative MGI_C57BL6J_96561 Il7 NCBI_Gene:16196,ENSEMBL:ENSMUSG00000040329 MGI:96561 protein coding gene interleukin 7
3 gene 7.576267 7.690001 positive MGI_C57BL6J_4439609 Gm16685 NCBI_Gene:102634900,ENSEMBL:ENSMUSG00000097804 MGI:4439609 lncRNA gene predicted gene, 16685
3 pseudogene 7.893335 7.893980 positive MGI_C57BL6J_5588906 Gm29747 NCBI_Gene:101055938,ENSEMBL:ENSMUSG00000103399 MGI:5588906 pseudogene predicted gene, 29747
3 gene 7.925303 7.954889 negative MGI_C57BL6J_1922726 1700010I02Rik NCBI_Gene:75476,ENSEMBL:ENSMUSG00000100010 MGI:1922726 lncRNA gene RIKEN cDNA 1700010I02 gene
3 gene 8.019669 8.022831 negative MGI_C57BL6J_3642332 5330432E05Rik NCBI_Gene:383820 MGI:3642332 unclassified gene RIKEN cDNA 5330432E05 gene
3 pseudogene 8.214330 8.216183 positive MGI_C57BL6J_3646860 Gm7103 NCBI_Gene:633072,ENSEMBL:ENSMUSG00000103725 MGI:3646860 pseudogene predicted gene 7103
3 gene 8.245438 8.245537 negative MGI_C57BL6J_3629711 Gt(pU21)108Imeg NA NA unclassified gene gene trap 108%2c Institute of Molecular Embryology and Genetics
3 pseudogene 8.327322 8.329907 positive MGI_C57BL6J_3645248 Gm5841 NCBI_Gene:545500,ENSEMBL:ENSMUSG00000103921 MGI:3645248 pseudogene predicted gene 5841
3 gene 8.429158 8.429264 positive MGI_C57BL6J_5454391 Gm24614 ENSEMBL:ENSMUSG00000065203 MGI:5454391 snRNA gene predicted gene, 24614
3 pseudogene 8.461387 8.463098 negative MGI_C57BL6J_3704094 Gm6194 NCBI_Gene:620966 MGI:3704094 pseudogene predicted gene 6194
3 pseudogene 8.462228 8.463035 negative MGI_C57BL6J_1919464 1700003N22Rik ENSEMBL:ENSMUSG00000102463 MGI:1919464 pseudogene RIKEN cDNA 1700003N22 gene
3 gene 8.494369 8.499902 negative MGI_C57BL6J_5624878 Gm41993 NCBI_Gene:105246751 MGI:5624878 lncRNA gene predicted gene, 41993
3 gene 8.509360 8.561606 positive MGI_C57BL6J_98241 Stmn2 NCBI_Gene:20257,ENSEMBL:ENSMUSG00000027500 MGI:98241 protein coding gene stathmin-like 2
3 pseudogene 8.615074 8.616522 negative MGI_C57BL6J_5011007 Gm18822 NCBI_Gene:100417782,ENSEMBL:ENSMUSG00000098047 MGI:5011007 pseudogene predicted gene, 18822
3 gene 8.628051 8.632454 positive MGI_C57BL6J_5591655 Gm32496 NCBI_Gene:102635065,ENSEMBL:ENSMUSG00000104102 MGI:5591655 lncRNA gene predicted gene, 32496
3 gene 8.663359 8.667256 negative MGI_C57BL6J_1341800 Hey1 NCBI_Gene:15213,ENSEMBL:ENSMUSG00000040289 MGI:1341800 protein coding gene hairy/enhancer-of-split related with YRPW motif 1
3 pseudogene 8.673410 8.673722 positive MGI_C57BL6J_5611235 Gm38007 ENSEMBL:ENSMUSG00000103814 MGI:5611235 pseudogene predicted gene, 38007
3 gene 8.679359 8.679477 negative MGI_C57BL6J_5453447 Gm23670 ENSEMBL:ENSMUSG00000088094 MGI:5453447 snoRNA gene predicted gene, 23670
3 gene 8.679438 8.693098 negative MGI_C57BL6J_5591720 Gm32561 NCBI_Gene:102635149 MGI:5591720 lncRNA gene predicted gene, 32561
3 gene 8.732188 8.736639 negative MGI_C57BL6J_2686488 C230057A21Rik NCBI_Gene:102635252,ENSEMBL:ENSMUSG00000103346 MGI:2686488 lncRNA gene RIKEN cDNA C230057A21 gene
3 gene 8.743677 8.746824 positive MGI_C57BL6J_1923855 1700042O13Rik NA NA lncRNA gene RIKEN cDNA 1700042O13 gene
3 gene 8.743682 8.746824 negative MGI_C57BL6J_5610875 Gm37647 ENSEMBL:ENSMUSG00000103256 MGI:5610875 unclassified gene predicted gene, 37647
3 gene 8.802146 8.923918 negative MGI_C57BL6J_1913480 Mrps28 NCBI_Gene:66230,ENSEMBL:ENSMUSG00000040269 MGI:1913480 protein coding gene mitochondrial ribosomal protein S28
3 gene 8.866119 8.881665 positive MGI_C57BL6J_5624880 Gm41995 NCBI_Gene:105246753 MGI:5624880 lncRNA gene predicted gene, 41995
3 pseudogene 8.881199 8.881643 positive MGI_C57BL6J_3705388 Gm15467 ENSEMBL:ENSMUSG00000081594 MGI:3705388 pseudogene predicted gene 15467
3 pseudogene 8.881990 8.882945 negative MGI_C57BL6J_3705491 Gm15466 NCBI_Gene:100504173,ENSEMBL:ENSMUSG00000081657 MGI:3705491 pseudogene predicted gene 15466
3 gene 8.925590 8.928038 positive MGI_C57BL6J_1918835 9130403I23Rik NA NA unclassified gene RIKEN cDNA 9130403I23 gene
3 gene 8.925593 9.004771 negative MGI_C57BL6J_107749 Tpd52 NCBI_Gene:21985,ENSEMBL:ENSMUSG00000027506 MGI:107749 protein coding gene tumor protein D52
3 gene 9.027570 9.029901 positive MGI_C57BL6J_5826469 Gm46832 NCBI_Gene:108168912 MGI:5826469 lncRNA gene predicted gene, 46832
3 pseudogene 9.047171 9.047492 negative MGI_C57BL6J_5610844 Gm37616 ENSEMBL:ENSMUSG00000103461 MGI:5610844 pseudogene predicted gene, 37616
3 gene 9.061964 9.071076 positive MGI_C57BL6J_1922399 4930539M17Rik NCBI_Gene:75149,ENSEMBL:ENSMUSG00000103116 MGI:1922399 lncRNA gene RIKEN cDNA 4930539M17 gene
3 pseudogene 9.072767 9.073211 positive MGI_C57BL6J_3648010 Gm8860 ENSEMBL:ENSMUSG00000103011 MGI:3648010 pseudogene predicted gene 8860
3 gene 9.157271 9.174711 negative MGI_C57BL6J_5624881 Gm41996 NCBI_Gene:105246754 MGI:5624881 lncRNA gene predicted gene, 41996
3 gene 9.177692 9.182437 negative MGI_C57BL6J_5592177 Gm33018 NCBI_Gene:102635764 MGI:5592177 lncRNA gene predicted gene, 33018
3 gene 9.250567 9.285333 positive MGI_C57BL6J_2139883 Zbtb10 NCBI_Gene:229055,ENSEMBL:ENSMUSG00000069114 MGI:2139883 protein coding gene zinc finger and BTB domain containing 10
3 gene 9.302688 9.343835 negative MGI_C57BL6J_5624882 Gm41997 NCBI_Gene:105246755 MGI:5624882 lncRNA gene predicted gene, 41997
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 18.34167 18.46134 negative MGI_C57BL6J_5589826 Gm30667 NCBI_Gene:102632645,ENSEMBL:ENSMUSG00000102886 MGI:5589826 lncRNA gene predicted gene, 30667
3 gene 18.46829 18.48048 negative MGI_C57BL6J_1921209 4930433B08Rik NCBI_Gene:73959,ENSEMBL:ENSMUSG00000102699 MGI:1921209 lncRNA gene RIKEN cDNA 4930433B08 gene
3 pseudogene 18.49462 18.53429 positive MGI_C57BL6J_3644758 Gm6369 NCBI_Gene:622921,ENSEMBL:ENSMUSG00000040217 MGI:3644758 pseudogene predicted gene 6369
3 pseudogene 18.56449 18.56614 positive MGI_C57BL6J_97558 Pgk1-ps3 NCBI_Gene:100416868,ENSEMBL:ENSMUSG00000105280 MGI:97558 pseudogene phosphoglycerate kinase 1, pseudogene 3
3 gene 18.60947 18.61738 negative MGI_C57BL6J_5589882 Gm30723 NCBI_Gene:102632727 MGI:5589882 lncRNA gene predicted gene, 30723
3 pseudogene 18.60981 18.61083 negative MGI_C57BL6J_5610545 Gm37317 ENSEMBL:ENSMUSG00000104091 MGI:5610545 pseudogene predicted gene, 37317
3 gene 18.61955 18.64309 negative MGI_C57BL6J_5589948 Gm30789 NCBI_Gene:102632812 MGI:5589948 lncRNA gene predicted gene, 30789
3 gene 18.62216 18.62614 positive MGI_C57BL6J_5663081 Gm42944 ENSEMBL:ENSMUSG00000104918 MGI:5663081 unclassified gene predicted gene 42944
3 pseudogene 18.75308 18.75340 positive MGI_C57BL6J_5589500 Gm30341 NCBI_Gene:102632201,ENSEMBL:ENSMUSG00000103264 MGI:5589500 pseudogene predicted gene, 30341
3 gene 19.13140 19.16309 negative MGI_C57BL6J_1921502 Armc1 NCBI_Gene:74252,ENSEMBL:ENSMUSG00000027599 MGI:1921502 protein coding gene armadillo repeat containing 1
3 gene 19.14319 19.14390 negative MGI_C57BL6J_5611207 Gm37979 ENSEMBL:ENSMUSG00000103135 MGI:5611207 unclassified gene predicted gene, 37979
3 gene 19.18731 19.22082 positive MGI_C57BL6J_1914722 Mtfr1 NCBI_Gene:67472,ENSEMBL:ENSMUSG00000027601 MGI:1914722 protein coding gene mitochondrial fission regulator 1
3 gene 19.22311 19.31132 negative MGI_C57BL6J_1202402 Pde7a NCBI_Gene:18583,ENSEMBL:ENSMUSG00000069094 MGI:1202402 protein coding gene phosphodiesterase 7A
3 gene 19.22311 19.22369 negative MGI_C57BL6J_1921035 4930431H11Rik NA NA unclassified gene RIKEN cDNA 4930431H11 gene
3 gene 19.22778 19.24099 positive MGI_C57BL6J_3801946 Gm16093 ENSEMBL:ENSMUSG00000087108 MGI:3801946 lncRNA gene predicted gene 16093
3 gene 19.31166 19.31374 positive MGI_C57BL6J_1920375 3110037C07Rik NA NA unclassified gene RIKEN cDNA 3110037C07 gene
3 gene 19.33077 19.33108 positive MGI_C57BL6J_5452059 Gm22282 ENSEMBL:ENSMUSG00000089149 MGI:5452059 unclassified non-coding RNA gene predicted gene, 22282
3 gene 19.37418 19.38763 positive MGI_C57BL6J_5625073 Gm42188 NCBI_Gene:105247004 MGI:5625073 lncRNA gene predicted gene, 42188
3 gene 19.50859 19.61086 positive MGI_C57BL6J_1913576 Dnajc5b NCBI_Gene:66326,ENSEMBL:ENSMUSG00000027606 MGI:1913576 protein coding gene DnaJ heat shock protein family (Hsp40) member C5 beta
3 gene 19.56025 19.56042 positive MGI_C57BL6J_5453107 Gm23330 ENSEMBL:ENSMUSG00000096211 MGI:5453107 snRNA gene predicted gene, 23330
3 pseudogene 19.58479 19.58554 positive MGI_C57BL6J_3646012 Gm6141 NCBI_Gene:620290,ENSEMBL:ENSMUSG00000084339 MGI:3646012 pseudogene predicted pseudogene 6141
3 gene 19.61037 19.62948 negative MGI_C57BL6J_1920674 1700064H15Rik NCBI_Gene:102633032,ENSEMBL:ENSMUSG00000082766 MGI:1920674 protein coding gene RIKEN cDNA 1700064H15 gene
3 gene 19.62796 19.62803 negative MGI_C57BL6J_4413716 n-TRacg3 NCBI_Gene:102467637 MGI:4413716 tRNA gene nuclear encoded tRNA arginine 3 (anticodon ACG)
3 gene 19.62835 19.62845 positive MGI_C57BL6J_4414074 n-TYgta1 NCBI_Gene:102467442 MGI:4414074 tRNA gene nuclear encoded tRNA tyrosine 1 (anticodon GTA)
3 gene 19.62878 19.62887 positive MGI_C57BL6J_4414075 n-TYgta2 NCBI_Gene:102467395 MGI:4414075 tRNA gene nuclear encoded tRNA tyrosine 2 (anticodon GTA)
3 gene 19.62899 19.62907 positive MGI_C57BL6J_4413687 n-TAagc14 NCBI_Gene:102467233 MGI:4413687 tRNA gene nuclear encoded tRNA alanine 14 (anticodon AGC)
3 gene 19.64434 19.69242 positive MGI_C57BL6J_3036269 Trim55 NCBI_Gene:381485,ENSEMBL:ENSMUSG00000060913 MGI:3036269 protein coding gene tripartite motif-containing 55
3 gene 19.68597 19.68657 positive MGI_C57BL6J_3642300 BC002189 ENSEMBL:ENSMUSG00000104465 MGI:3642300 lncRNA gene cDNA sequence BC002189
3 gene 19.69340 19.69540 negative MGI_C57BL6J_88496 Crh NCBI_Gene:12918,ENSEMBL:ENSMUSG00000049796 MGI:88496 protein coding gene corticotropin releasing hormone
3 gene 19.69449 19.70735 positive MGI_C57BL6J_5625074 Gm42189 NCBI_Gene:105247005 MGI:5625074 lncRNA gene predicted gene, 42189
3 pseudogene 19.70825 19.70932 negative MGI_C57BL6J_5011049 Gm18864 NCBI_Gene:100417853,ENSEMBL:ENSMUSG00000102261 MGI:5011049 pseudogene predicted gene, 18864
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 20.30841 20.30992 positive MGI_C57BL6J_5663662 Gm43525 ENSEMBL:ENSMUSG00000105208 MGI:5663662 lncRNA gene predicted gene 43525
3 gene 20.31447 20.36718 negative MGI_C57BL6J_87965 Agtr1b NCBI_Gene:11608,ENSEMBL:ENSMUSG00000054988 MGI:87965 protein coding gene angiotensin II receptor, type 1b
3 pseudogene 20.39101 20.39198 negative MGI_C57BL6J_5010611 Gm18426 NCBI_Gene:100417153,ENSEMBL:ENSMUSG00000103573 MGI:5010611 pseudogene predicted gene, 18426
3 gene 20.40250 20.50621 negative MGI_C57BL6J_5590625 Gm31466 NCBI_Gene:108168860,ENSEMBL:ENSMUSG00000102636 MGI:5590625 lncRNA gene predicted gene, 31466
3 gene 20.40467 20.40491 positive MGI_C57BL6J_5662731 Gm42594 ENSEMBL:ENSMUSG00000106442 MGI:5662731 unclassified gene predicted gene 42594
3 pseudogene 20.78247 20.78407 negative MGI_C57BL6J_5010676 Gm18491 NCBI_Gene:100417265,ENSEMBL:ENSMUSG00000103460 MGI:5010676 pseudogene predicted gene, 18491
3 pseudogene 20.78794 20.78815 positive MGI_C57BL6J_5611551 Gm38323 ENSEMBL:ENSMUSG00000102986 MGI:5611551 pseudogene predicted gene, 38323
3 pseudogene 20.80448 20.80609 positive MGI_C57BL6J_5010678 Gm18493 NCBI_Gene:100417268,ENSEMBL:ENSMUSG00000103533 MGI:5010678 pseudogene predicted gene, 18493
3 gene 20.81639 20.82236 negative MGI_C57BL6J_5590711 Gm31552 NCBI_Gene:102633820 MGI:5590711 lncRNA gene predicted gene, 31552
3 gene 20.81962 20.82369 positive MGI_C57BL6J_5610708 Gm37480 ENSEMBL:ENSMUSG00000102807 MGI:5610708 unclassified gene predicted gene, 37480
3 pseudogene 21.04945 21.05053 positive MGI_C57BL6J_3647006 Gm7488 NCBI_Gene:665094,ENSEMBL:ENSMUSG00000039617 MGI:3647006 pseudogene predicted gene 7488
3 pseudogene 21.11358 21.11400 negative MGI_C57BL6J_5663297 Gm43160 ENSEMBL:ENSMUSG00000106051 MGI:5663297 pseudogene predicted gene 43160
3 gene 21.26837 21.26909 negative MGI_C57BL6J_5579843 Gm29137 ENSEMBL:ENSMUSG00000101897 MGI:5579843 lncRNA gene predicted gene 29137
3 gene 21.42179 21.48966 negative MGI_C57BL6J_5590769 Gm31610 NCBI_Gene:102633894 MGI:5590769 lncRNA gene predicted gene, 31610
3 pseudogene 21.60381 21.60551 positive MGI_C57BL6J_5663812 Gm43675 ENSEMBL:ENSMUSG00000106085 MGI:5663812 pseudogene predicted gene 43675
3 pseudogene 21.64839 21.64918 positive MGI_C57BL6J_5010120 Gm17935 NCBI_Gene:100416137,ENSEMBL:ENSMUSG00000106460 MGI:5010120 pseudogene predicted gene, 17935
3 gene 21.70282 21.71246 positive MGI_C57BL6J_5590852 Gm31693 NCBI_Gene:102634003,ENSEMBL:ENSMUSG00000105440 MGI:5590852 lncRNA gene predicted gene, 31693
3 gene 21.75353 21.80080 negative MGI_C57BL6J_2442162 7530428D23Rik NCBI_Gene:319506,ENSEMBL:ENSMUSG00000103441 MGI:2442162 lncRNA gene RIKEN cDNA 7530428D23 gene
3 gene 21.86417 21.96435 negative MGI_C57BL6J_5590972 Gm31813 NCBI_Gene:102634161 MGI:5590972 lncRNA gene predicted gene, 31813
3 gene 21.99768 21.99847 negative MGI_C57BL6J_5663811 Gm43674 ENSEMBL:ENSMUSG00000106321 MGI:5663811 lncRNA gene predicted gene 43674
3 pseudogene 22.02120 22.02163 positive MGI_C57BL6J_5663808 Gm43671 ENSEMBL:ENSMUSG00000106527 MGI:5663808 pseudogene predicted gene 43671
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 22.07659 22.21659 positive MGI_C57BL6J_2441730 Tbl1xr1 NCBI_Gene:81004,ENSEMBL:ENSMUSG00000027630 MGI:2441730 protein coding gene transducin (beta)-like 1X-linked receptor 1
3 gene 22.25137 22.25166 positive MGI_C57BL6J_105104 Rprl2 NCBI_Gene:19784,ENSEMBL:ENSMUSG00000087775 MGI:105104 RNase P RNA gene ribonuclease P RNA-like 2
3 gene 22.28508 22.29783 negative MGI_C57BL6J_5611552 Gm38324 ENSEMBL:ENSMUSG00000102987 MGI:5611552 lncRNA gene predicted gene, 38324
3 pseudogene 22.34885 22.34961 negative MGI_C57BL6J_5610864 Gm37636 NCBI_Gene:108168850,ENSEMBL:ENSMUSG00000102866 MGI:5610864 pseudogene predicted gene, 37636
3 gene 22.40992 22.41005 negative MGI_C57BL6J_5456131 Gm26354 ENSEMBL:ENSMUSG00000088846 MGI:5456131 snoRNA gene predicted gene, 26354
3 pseudogene 22.52501 22.52624 positive MGI_C57BL6J_3780056 Spin3-ps NCBI_Gene:675593,ENSEMBL:ENSMUSG00000103801 MGI:3780056 pseudogene spindlin family, member 3, pseudogene
3 gene 22.81221 22.81246 positive MGI_C57BL6J_5611117 Gm37889 ENSEMBL:ENSMUSG00000102233 MGI:5611117 unclassified gene predicted gene, 37889
3 pseudogene 23.07242 23.07492 positive MGI_C57BL6J_5610211 Gm36983 ENSEMBL:ENSMUSG00000103275 MGI:5610211 pseudogene predicted gene, 36983
3 gene 23.08598 23.08895 positive MGI_C57BL6J_5610249 Gm37021 ENSEMBL:ENSMUSG00000103607 MGI:5610249 lncRNA gene predicted gene, 37021
3 pseudogene 23.37494 23.37532 negative MGI_C57BL6J_5610720 Gm37492 ENSEMBL:ENSMUSG00000102214 MGI:5610720 pseudogene predicted gene, 37492
3 gene 23.46105 23.52140 positive MGI_C57BL6J_1924114 4930412E21Rik NCBI_Gene:100039548,ENSEMBL:ENSMUSG00000102203 MGI:1924114 lncRNA gene RIKEN cDNA 4930412E21 gene
3 gene 23.79810 25.14426 negative MGI_C57BL6J_2685867 Naaladl2 NCBI_Gene:635702,ENSEMBL:ENSMUSG00000102758 MGI:2685867 protein coding gene N-acetylated alpha-linked acidic dipeptidase-like 2
3 pseudogene 23.93096 23.93200 positive MGI_C57BL6J_5011009 Gm18824 NCBI_Gene:100417784 MGI:5011009 pseudogene predicted gene, 18824
3 gene 23.94002 23.94593 positive MGI_C57BL6J_5625076 Gm42191 NCBI_Gene:105247007 MGI:5625076 lncRNA gene predicted gene, 42191
3 gene 24.16303 24.16311 negative MGI_C57BL6J_4413931 n-TLcag1 NCBI_Gene:102467553 MGI:4413931 tRNA gene nuclear encoded tRNA leucine 1 (anticodon CAG)
3 pseudogene 24.33304 24.33355 positive MGI_C57BL6J_3645137 Gm7536 NCBI_Gene:665189,ENSEMBL:ENSMUSG00000057036 MGI:3645137 pseudogene predicted gene 7536
3 gene 24.48671 24.48749 positive MGI_C57BL6J_1920306 2900080J11Rik NA NA unclassified gene RIKEN cDNA 2900080J11 gene
3 gene 24.56207 24.56218 positive MGI_C57BL6J_5454481 Gm24704 ENSEMBL:ENSMUSG00000070227 MGI:5454481 snRNA gene predicted gene, 24704
3 gene 24.71872 24.71898 positive MGI_C57BL6J_5453839 Gm24062 ENSEMBL:ENSMUSG00000088115 MGI:5453839 unclassified non-coding RNA gene predicted gene, 24062
3 pseudogene 25.00742 25.00771 negative MGI_C57BL6J_5662911 Gm42774 ENSEMBL:ENSMUSG00000105009 MGI:5662911 pseudogene predicted gene 42774
3 gene 25.14407 25.14426 positive MGI_C57BL6J_5610364 Gm37136 ENSEMBL:ENSMUSG00000102876 MGI:5610364 unclassified gene predicted gene, 37136
3 pseudogene 25.18480 25.18498 negative MGI_C57BL6J_5611230 Gm38002 ENSEMBL:ENSMUSG00000102855 MGI:5611230 pseudogene predicted gene, 38002
3 pseudogene 25.21076 25.21273 negative MGI_C57BL6J_3704211 Gm10259 NCBI_Gene:100039592,ENSEMBL:ENSMUSG00000069083 MGI:3704211 pseudogene predicted pseudogene 10259
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 25.42621 26.33286 negative MGI_C57BL6J_2179435 Nlgn1 NCBI_Gene:192167,ENSEMBL:ENSMUSG00000063887 MGI:2179435 protein coding gene neuroligin 1
3 gene 25.54602 25.54615 positive MGI_C57BL6J_5454027 Gm24250 ENSEMBL:ENSMUSG00000087945 MGI:5454027 rRNA gene predicted gene, 24250
3 gene 25.64956 25.65077 negative MGI_C57BL6J_1920377 3110039C02Rik NA NA unclassified gene RIKEN cDNA 3110039C02 gene
3 gene 25.69519 25.70030 negative MGI_C57BL6J_5610801 Gm37573 ENSEMBL:ENSMUSG00000102397 MGI:5610801 lncRNA gene predicted gene, 37573
3 pseudogene 25.73123 25.73261 positive MGI_C57BL6J_3647151 Gm6197 NCBI_Gene:621017,ENSEMBL:ENSMUSG00000104295 MGI:3647151 pseudogene predicted gene 6197
3 gene 25.86566 25.86752 negative MGI_C57BL6J_2443798 A830010M09Rik NA NA unclassified gene RIKEN cDNA A830010M09 gene
3 gene 26.33115 26.33688 positive MGI_C57BL6J_3698881 A830092H15Rik NCBI_Gene:100379095,ENSEMBL:ENSMUSG00000074664 MGI:3698881 lncRNA gene RIKEN cDNA A830092H15 gene
3 pseudogene 26.38044 26.38256 positive MGI_C57BL6J_3648363 Gm4855 NCBI_Gene:229152,ENSEMBL:ENSMUSG00000102274 MGI:3648363 pseudogene predicted gene 4855
3 gene 26.62618 26.62631 negative MGI_C57BL6J_5455550 Gm25773 ENSEMBL:ENSMUSG00000080368 MGI:5455550 miRNA gene predicted gene, 25773
3 gene 26.63762 26.98321 positive MGI_C57BL6J_1918112 Spata16 NCBI_Gene:70862,ENSEMBL:ENSMUSG00000039335 MGI:1918112 protein coding gene spermatogenesis associated 16
3 gene 26.85020 26.87914 negative MGI_C57BL6J_5591617 Gm32458 NCBI_Gene:102635017 MGI:5591617 lncRNA gene predicted gene, 32458
3 pseudogene 27.01276 27.01287 positive MGI_C57BL6J_5610887 Gm37659 ENSEMBL:ENSMUSG00000103712 MGI:5610887 pseudogene predicted gene, 37659
3 gene 27.02642 27.02655 negative MGI_C57BL6J_5690856 Gm44464 ENSEMBL:ENSMUSG00000105670 MGI:5690856 miRNA gene predicted gene, 44464
3 pseudogene 27.04674 27.04798 negative MGI_C57BL6J_3645515 Gm7558 NCBI_Gene:665258,ENSEMBL:ENSMUSG00000102908 MGI:3645515 pseudogene predicted gene 7558
3 gene 27.09722 27.15391 negative MGI_C57BL6J_95281 Ect2 NCBI_Gene:13605,ENSEMBL:ENSMUSG00000027699 MGI:95281 protein coding gene ect2 oncogene
3 gene 27.10898 27.10909 positive MGI_C57BL6J_5454929 Gm25152 ENSEMBL:ENSMUSG00000087742 MGI:5454929 snoRNA gene predicted gene, 25152
3 gene 27.15403 27.15702 positive MGI_C57BL6J_1923907 1700125G22Rik NCBI_Gene:76657,ENSEMBL:ENSMUSG00000097584 MGI:1923907 lncRNA gene RIKEN cDNA 1700125G22 gene
3 gene 27.18296 27.28461 positive MGI_C57BL6J_2443191 Nceh1 NCBI_Gene:320024,ENSEMBL:ENSMUSG00000027698 MGI:2443191 protein coding gene neutral cholesterol ester hydrolase 1
3 gene 27.26033 27.28446 positive MGI_C57BL6J_5625077 Gm42192 NCBI_Gene:105247008 MGI:5625077 lncRNA gene predicted gene, 42192
3 pseudogene 27.27806 27.27845 positive MGI_C57BL6J_5610419 Gm37191 ENSEMBL:ENSMUSG00000102186 MGI:5610419 pseudogene predicted gene, 37191
3 pseudogene 27.30841 27.30867 negative MGI_C57BL6J_5663482 Gm43345 ENSEMBL:ENSMUSG00000105806 MGI:5663482 pseudogene predicted gene 43345
3 gene 27.31703 27.34243 positive MGI_C57BL6J_107414 Tnfsf10 NCBI_Gene:22035,ENSEMBL:ENSMUSG00000039304 MGI:107414 protein coding gene tumor necrosis factor (ligand) superfamily, member 10
3 gene 27.37131 27.37923 positive MGI_C57BL6J_2441906 Ghsr NCBI_Gene:208188,ENSEMBL:ENSMUSG00000051136 MGI:2441906 protein coding gene growth hormone secretagogue receptor
3 gene 27.41511 27.41615 negative MGI_C57BL6J_1924904 C430049A07Rik NA NA unclassified gene RIKEN cDNA C430049A07 gene
3 gene 27.41616 27.71311 negative MGI_C57BL6J_1919257 Fndc3b NCBI_Gene:72007,ENSEMBL:ENSMUSG00000039286 MGI:1919257 protein coding gene fibronectin type III domain containing 3B
3 gene 27.44166 27.44411 positive MGI_C57BL6J_5625078 Gm42193 NCBI_Gene:105247009 MGI:5625078 lncRNA gene predicted gene, 42193
3 gene 27.48228 27.48424 positive MGI_C57BL6J_5591897 Gm32738 NCBI_Gene:102635381 MGI:5591897 lncRNA gene predicted gene, 32738
3 gene 27.54664 27.54787 positive MGI_C57BL6J_5663481 Gm43344 ENSEMBL:ENSMUSG00000106625 MGI:5663481 unclassified gene predicted gene 43344
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 27.41616 27.71311 negative MGI_C57BL6J_1919257 Fndc3b NCBI_Gene:72007,ENSEMBL:ENSMUSG00000039286 MGI:1919257 protein coding gene fibronectin type III domain containing 3B
3 gene 27.58490 27.58499 negative MGI_C57BL6J_4834306 Mir3092 miRBase:MI0014085,NCBI_Gene:100526525,ENSEMBL:ENSMUSG00000092695 MGI:4834306 miRNA gene microRNA 3092
3 gene 27.77786 27.84092 positive MGI_C57BL6J_5625079 Gm42194 NCBI_Gene:105247010 MGI:5625079 lncRNA gene predicted gene, 42194
3 gene 27.79788 27.81538 negative MGI_C57BL6J_5591954 Gm32795 NCBI_Gene:102635463 MGI:5591954 lncRNA gene predicted gene, 32795
3 gene 27.86606 27.89639 negative MGI_C57BL6J_2685410 Tmem212 NCBI_Gene:208613,ENSEMBL:ENSMUSG00000043164 MGI:2685410 protein coding gene transmembrane protein 212
3 gene 27.86811 27.86827 positive MGI_C57BL6J_5455817 Gm26040 ENSEMBL:ENSMUSG00000088772 MGI:5455817 snoRNA gene predicted gene, 26040
3 gene 27.89680 27.90023 negative MGI_C57BL6J_5625080 Gm42195 NCBI_Gene:105247011 MGI:5625080 lncRNA gene predicted gene, 42195
3 gene 27.93841 28.13336 positive MGI_C57BL6J_109585 Pld1 NCBI_Gene:18805,ENSEMBL:ENSMUSG00000027695 MGI:109585 protein coding gene phospholipase D1
3 gene 28.17651 28.21221 positive MGI_C57BL6J_5625081 Gm42196 NCBI_Gene:105247012,ENSEMBL:ENSMUSG00000109716 MGI:5625081 lncRNA gene predicted gene, 42196
3 pseudogene 28.24552 28.24577 positive MGI_C57BL6J_5610326 Gm37098 ENSEMBL:ENSMUSG00000103729 MGI:5610326 pseudogene predicted gene, 37098
3 gene 28.26321 28.67586 positive MGI_C57BL6J_1916264 Tnik NCBI_Gene:665113,ENSEMBL:ENSMUSG00000027692 MGI:1916264 protein coding gene TRAF2 and NCK interacting kinase
3 gene 28.26928 28.26983 positive MGI_C57BL6J_2139599 AA589472 NA NA unclassified gene expressed sequence AA589472
3 gene 28.32436 28.32609 positive MGI_C57BL6J_5610765 Gm37537 ENSEMBL:ENSMUSG00000103420 MGI:5610765 unclassified gene predicted gene, 37537
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 28.26321 28.67586 positive MGI_C57BL6J_1916264 Tnik NCBI_Gene:665113,ENSEMBL:ENSMUSG00000027692 MGI:1916264 protein coding gene TRAF2 and NCK interacting kinase
3 gene 28.69790 28.73136 positive MGI_C57BL6J_1095438 Slc2a2 NCBI_Gene:20526,ENSEMBL:ENSMUSG00000027690 MGI:1095438 protein coding gene solute carrier family 2 (facilitated glucose transporter), member 2
3 gene 28.70267 28.78111 negative MGI_C57BL6J_1920861 1700112D23Rik NCBI_Gene:73611,ENSEMBL:ENSMUSG00000091329 MGI:1920861 lncRNA gene RIKEN cDNA 1700112D23 gene
3 pseudogene 28.76353 28.76539 negative MGI_C57BL6J_3648080 Gm6505 NCBI_Gene:624446,ENSEMBL:ENSMUSG00000070522 MGI:3648080 pseudogene predicted pseudogene 6505
3 gene 28.78127 28.79885 positive MGI_C57BL6J_1933735 Eif5a2 NCBI_Gene:208691,ENSEMBL:ENSMUSG00000050192 MGI:1933735 protein coding gene eukaryotic translation initiation factor 5A2
3 gene 28.79064 28.80542 negative MGI_C57BL6J_5592109 Gm32950 NCBI_Gene:102635671,ENSEMBL:ENSMUSG00000103827 MGI:5592109 lncRNA gene predicted gene, 32950
3 gene 28.80544 28.80742 positive MGI_C57BL6J_1915278 Rpl22l1 NCBI_Gene:68028,ENSEMBL:ENSMUSG00000039221 MGI:1915278 protein coding gene ribosomal protein L22 like 1
3 gene 28.80720 28.81618 negative MGI_C57BL6J_5592210 Gm33051 NCBI_Gene:102635804,ENSEMBL:ENSMUSG00000104444 MGI:5592210 lncRNA gene predicted gene, 33051
3 gene 28.85203 28.85426 negative MGI_C57BL6J_5611095 Gm37867 ENSEMBL:ENSMUSG00000104275 MGI:5611095 lncRNA gene predicted gene, 37867
3 gene 28.87981 28.88346 positive MGI_C57BL6J_5611152 Gm37924 ENSEMBL:ENSMUSG00000102482 MGI:5611152 unclassified gene predicted gene, 37924
3 gene 28.88346 28.89728 negative MGI_C57BL6J_5592261 Gm33102 NCBI_Gene:102635876 MGI:5592261 lncRNA gene predicted gene, 33102
3 gene 28.89262 28.92672 positive MGI_C57BL6J_2686373 Gm1527 NCBI_Gene:385263,ENSEMBL:ENSMUSG00000074655 MGI:2686373 protein coding gene predicted gene 1527
3 gene 29.04377 29.04555 negative MGI_C57BL6J_5592313 Gm33154 NCBI_Gene:102635945 MGI:5592313 lncRNA gene predicted gene, 33154
3 gene 29.08072 29.69121 positive MGI_C57BL6J_1922990 Egfem1 NCBI_Gene:75740,ENSEMBL:ENSMUSG00000063600 MGI:1922990 protein coding gene EGF-like and EMI domain containing 1
3 gene 29.17484 29.17693 positive MGI_C57BL6J_5611257 Gm38029 ENSEMBL:ENSMUSG00000103992 MGI:5611257 unclassified gene predicted gene, 38029
3 gene 29.20934 29.21198 positive MGI_C57BL6J_2442122 D230021J17Rik NA NA unclassified gene RIKEN cDNA D230021J17 gene
3 gene 29.21989 29.22125 positive MGI_C57BL6J_5611193 Gm37965 ENSEMBL:ENSMUSG00000102579 MGI:5611193 unclassified gene predicted gene, 37965
3 gene 29.26628 29.26684 negative MGI_C57BL6J_2139582 AA516838 NA NA unclassified gene expressed sequence AA516838
3 gene 29.41682 29.41692 positive MGI_C57BL6J_3691605 Mir551b miRBase:MI0004131,NCBI_Gene:791072,ENSEMBL:ENSMUSG00000076120 MGI:3691605 miRNA gene microRNA 551b
3 gene 29.63674 29.63685 positive MGI_C57BL6J_5531333 Mir21b miRBase:MI0021906,NCBI_Gene:102466637,ENSEMBL:ENSMUSG00000098315 MGI:5531333 miRNA gene microRNA 21b
3 gene 29.66251 29.69656 negative MGI_C57BL6J_5625082 Gm42197 NCBI_Gene:105247013 MGI:5625082 lncRNA gene predicted gene, 42197
3 gene 29.76404 29.89323 negative MGI_C57BL6J_5592365 Gm33206 NCBI_Gene:102636014,ENSEMBL:ENSMUSG00000102574 MGI:5592365 lncRNA gene predicted gene, 33206
3 pseudogene 29.77128 29.77142 positive MGI_C57BL6J_5610785 Gm37557 ENSEMBL:ENSMUSG00000103095 MGI:5610785 pseudogene predicted gene, 37557
3 gene 29.89101 29.92419 positive MGI_C57BL6J_5564803 Mannr NCBI_Gene:102636083,ENSEMBL:ENSMUSG00000102590 MGI:5564803 lncRNA gene Mecom adjacent non-protein coding RNA
3 pseudogene 29.92654 29.92697 positive MGI_C57BL6J_5610509 Gm37281 ENSEMBL:ENSMUSG00000102884 MGI:5610509 pseudogene predicted gene, 37281
3 gene 29.95130 30.54801 negative MGI_C57BL6J_95457 Mecom NCBI_Gene:14013,ENSEMBL:ENSMUSG00000027684 MGI:95457 protein coding gene MDS1 and EVI1 complex locus
3 gene 30.01238 30.05481 positive MGI_C57BL6J_4439646 Mecomos ENSEMBL:ENSMUSG00000085702 MGI:4439646 antisense lncRNA gene MDS1 and EVI1 complex locus, opposite strand
3 gene 30.16025 30.16189 negative MGI_C57BL6J_5611294 Gm38066 ENSEMBL:ENSMUSG00000104486 MGI:5611294 unclassified gene predicted gene, 38066
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 29.95130 30.54801 negative MGI_C57BL6J_95457 Mecom NCBI_Gene:14013,ENSEMBL:ENSMUSG00000027684 MGI:95457 protein coding gene MDS1 and EVI1 complex locus
3 gene 30.22557 30.22769 negative MGI_C57BL6J_5611425 Gm38197 ENSEMBL:ENSMUSG00000102460 MGI:5611425 unclassified gene predicted gene, 38197
3 gene 30.26684 30.28019 negative MGI_C57BL6J_3648282 Gm10258 NCBI_Gene:545510,ENSEMBL:ENSMUSG00000069074 MGI:3648282 unclassified non-coding RNA gene predicted gene 10258
3 gene 30.27232 30.27438 negative MGI_C57BL6J_5611590 Gm38362 ENSEMBL:ENSMUSG00000103870 MGI:5611590 unclassified gene predicted gene, 38362
3 gene 30.34998 30.35132 negative MGI_C57BL6J_1924752 9530010C24Rik NA NA unclassified gene RIKEN cDNA 9530010C24 gene
3 gene 30.48843 30.48929 positive MGI_C57BL6J_5610252 Gm37024 ENSEMBL:ENSMUSG00000104079 MGI:5610252 unclassified gene predicted gene, 37024
3 gene 30.50172 30.50381 negative MGI_C57BL6J_5610880 Gm37652 ENSEMBL:ENSMUSG00000103738 MGI:5610880 unclassified gene predicted gene, 37652
3 gene 30.55270 30.56424 negative MGI_C57BL6J_5611486 Gm38258 ENSEMBL:ENSMUSG00000102256 MGI:5611486 lncRNA gene predicted gene, 38258
3 pseudogene 30.56166 30.56213 negative MGI_C57BL6J_5611381 Gm38153 ENSEMBL:ENSMUSG00000104243 MGI:5611381 pseudogene predicted gene, 38153
3 gene 30.59484 30.59576 negative MGI_C57BL6J_1920499 1600017P15Rik ENSEMBL:ENSMUSG00000102505,ENSEMBL:ENSMUSG00000065361 MGI:1920499 unclassified gene RIKEN cDNA 1600017P15 gene
3 gene 30.59707 30.59994 negative MGI_C57BL6J_1923902 Actrt3 NCBI_Gene:76652,ENSEMBL:ENSMUSG00000037737 MGI:1923902 protein coding gene actin related protein T3
3 gene 30.60127 30.60134 positive MGI_C57BL6J_4414091 n-TVaac8 NCBI_Gene:102467402 MGI:4414091 tRNA gene nuclear encoded tRNA valine 8 (anticodon AAC)
3 gene 30.60206 30.61987 positive MGI_C57BL6J_1931415 Mynn NCBI_Gene:80732,ENSEMBL:ENSMUSG00000037730 MGI:1931415 protein coding gene myoneurin
3 gene 30.62427 30.64787 negative MGI_C57BL6J_1919077 Lrrc34 NCBI_Gene:71827,ENSEMBL:ENSMUSG00000027702 MGI:1919077 protein coding gene leucine rich repeat containing 34
3 gene 30.64451 30.67243 positive MGI_C57BL6J_1915557 Lrriq4 NCBI_Gene:68307,ENSEMBL:ENSMUSG00000027703 MGI:1915557 protein coding gene leucine-rich repeats and IQ motif containing 4
3 gene 30.67855 30.69984 negative MGI_C57BL6J_2443864 Lrrc31 NCBI_Gene:320352,ENSEMBL:ENSMUSG00000074653 MGI:2443864 protein coding gene leucine rich repeat containing 31
3 gene 30.68594 30.69301 positive MGI_C57BL6J_3705271 Gm15462 NCBI_Gene:108168861,ENSEMBL:ENSMUSG00000086189 MGI:3705271 lncRNA gene predicted gene 15462
3 gene 30.74629 30.76717 positive MGI_C57BL6J_1923203 Samd7 NCBI_Gene:75953,ENSEMBL:ENSMUSG00000051860 MGI:1923203 protein coding gene sterile alpha motif domain containing 7
3 gene 30.75231 30.75665 negative MGI_C57BL6J_5592749 Gm33590 NCBI_Gene:102636556 MGI:5592749 lncRNA gene predicted gene, 33590
3 gene 30.79257 30.79356 negative MGI_C57BL6J_1918530 4933429H19Rik ENSEMBL:ENSMUSG00000097786 MGI:1918530 lncRNA gene RIKEN cDNA 4933429H19 gene
3 gene 30.79276 30.82126 positive MGI_C57BL6J_1916526 Sec62 NCBI_Gene:69276,ENSEMBL:ENSMUSG00000027706 MGI:1916526 protein coding gene SEC62 homolog (S. cerevisiae)
3 pseudogene 30.82857 30.82883 negative MGI_C57BL6J_5611308 Gm38080 ENSEMBL:ENSMUSG00000104361 MGI:5611308 pseudogene predicted gene, 38080
3 gene 30.84154 30.85199 negative MGI_C57BL6J_5625083 Gm42198 NCBI_Gene:105247015 MGI:5625083 lncRNA gene predicted gene, 42198
3 gene 30.85248 30.85586 negative MGI_C57BL6J_5625084 Gm42199 NCBI_Gene:105247016 MGI:5625084 lncRNA gene predicted gene, 42199
3 gene 30.85587 30.89719 positive MGI_C57BL6J_1919112 Gpr160 NCBI_Gene:71862,ENSEMBL:ENSMUSG00000037661 MGI:1919112 protein coding gene G protein-coupled receptor 160
3 gene 30.89929 30.96948 negative MGI_C57BL6J_2181434 Phc3 NCBI_Gene:241915,ENSEMBL:ENSMUSG00000037652 MGI:2181434 protein coding gene polyhomeotic 3
3 gene 30.95733 30.95764 negative MGI_C57BL6J_1924590 9530022L04Rik ENSEMBL:ENSMUSG00000102369 MGI:1924590 unclassified gene RIKEN cDNA 9530022L04 gene
3 pseudogene 30.97291 30.97511 positive MGI_C57BL6J_3781157 Gm2979 NCBI_Gene:100040809,ENSEMBL:ENSMUSG00000102741 MGI:3781157 pseudogene predicted gene 2979
3 gene 30.99574 31.05296 positive MGI_C57BL6J_99260 Prkci NCBI_Gene:18759,ENSEMBL:ENSMUSG00000037643 MGI:99260 protein coding gene protein kinase C, iota
3 gene 31.03897 31.03903 positive MGI_C57BL6J_5531134 Mir7008 miRBase:MI0022857,NCBI_Gene:102465610,ENSEMBL:ENSMUSG00000098890 MGI:5531134 miRNA gene microRNA 7008
3 gene 31.06130 31.06669 positive MGI_C57BL6J_5592800 Gm33641 NCBI_Gene:102636630 MGI:5592800 lncRNA gene predicted gene, 33641
3 gene 31.06243 31.07994 negative MGI_C57BL6J_5592853 Gm33694 NCBI_Gene:102636694 MGI:5592853 lncRNA gene predicted gene, 33694
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 pseudogene 31.64480 31.69058 negative MGI_C57BL6J_3779607 Gm6558 NCBI_Gene:625125,ENSEMBL:ENSMUSG00000103499 MGI:3779607 pseudogene predicted gene 6558
3 gene 31.68642 31.69214 positive MGI_C57BL6J_5593045 Gm33886 NCBI_Gene:102636961 MGI:5593045 lncRNA gene predicted gene, 33886
3 gene 31.89883 31.90212 negative MGI_C57BL6J_5593190 Gm34031 NCBI_Gene:102637147 MGI:5593190 lncRNA gene predicted gene, 34031
3 gene 31.90213 32.20018 positive MGI_C57BL6J_1919663 Kcnmb2 NCBI_Gene:72413,ENSEMBL:ENSMUSG00000037610 MGI:1919663 protein coding gene potassium large conductance calcium-activated channel, subfamily M, beta member 2
3 gene 31.95476 31.95780 positive MGI_C57BL6J_5611062 Gm37834 ENSEMBL:ENSMUSG00000103539 MGI:5611062 unclassified gene predicted gene, 37834
3 gene 32.23753 32.32631 negative MGI_C57BL6J_5625086 Gm42201 NCBI_Gene:105247019 MGI:5625086 lncRNA gene predicted gene, 42201
3 pseudogene 32.26033 32.26111 positive MGI_C57BL6J_5610998 Gm37770 NCBI_Gene:108168862,ENSEMBL:ENSMUSG00000103643 MGI:5610998 pseudogene predicted gene, 37770
3 gene 32.33479 32.36601 negative MGI_C57BL6J_1195270 Zmat3 NCBI_Gene:22401,ENSEMBL:ENSMUSG00000027663 MGI:1195270 protein coding gene zinc finger matrin type 3
3 gene 32.36549 32.36744 positive MGI_C57BL6J_1914826 4930429B21Rik NCBI_Gene:67576 MGI:1914826 lncRNA gene RIKEN cDNA 4930429B21 gene
3 gene 32.37158 32.37299 negative MGI_C57BL6J_5610218 Gm36990 ENSEMBL:ENSMUSG00000102825 MGI:5610218 unclassified gene predicted gene, 36990
3 gene 32.37898 32.38470 negative MGI_C57BL6J_5625087 Gm42202 NCBI_Gene:105247020 MGI:5625087 lncRNA gene predicted gene, 42202
3 gene 32.39707 32.46849 positive MGI_C57BL6J_1206581 Pik3ca NCBI_Gene:18706,ENSEMBL:ENSMUSG00000027665 MGI:1206581 protein coding gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
3 gene 32.45459 32.45576 positive MGI_C57BL6J_5610351 Gm37123 ENSEMBL:ENSMUSG00000103039 MGI:5610351 unclassified gene predicted gene, 37123
3 gene 32.46778 32.50290 negative MGI_C57BL6J_3612244 Kcnmb3 NCBI_Gene:100502876,ENSEMBL:ENSMUSG00000091091 MGI:3612244 protein coding gene potassium large conductance calcium-activated channel, subfamily M, beta member 3
3 gene 32.51026 32.52083 positive MGI_C57BL6J_1915028 Zfp639 NCBI_Gene:67778,ENSEMBL:ENSMUSG00000027667 MGI:1915028 protein coding gene zinc finger protein 639
3 gene 32.51180 32.51234 negative MGI_C57BL6J_5610820 Gm37592 ENSEMBL:ENSMUSG00000104231 MGI:5610820 lncRNA gene predicted gene, 37592
3 gene 32.52946 32.57924 positive MGI_C57BL6J_1914664 Mfn1 NCBI_Gene:67414,ENSEMBL:ENSMUSG00000027668 MGI:1914664 protein coding gene mitofusin 1
3 gene 32.58033 32.61659 negative MGI_C57BL6J_104581 Gnb4 NCBI_Gene:14696,ENSEMBL:ENSMUSG00000027669 MGI:104581 protein coding gene guanine nucleotide binding protein (G protein), beta 4
3 gene 32.61086 32.61351 positive MGI_C57BL6J_5610868 Gm37640 ENSEMBL:ENSMUSG00000102862 MGI:5610868 lncRNA gene predicted gene, 37640
3 gene 32.70630 32.72697 positive MGI_C57BL6J_1861453 Actl6a NCBI_Gene:56456,ENSEMBL:ENSMUSG00000027671 MGI:1861453 protein coding gene actin-like 6A
3 gene 32.72178 32.72209 negative MGI_C57BL6J_5610581 Gm37353 ENSEMBL:ENSMUSG00000103590 MGI:5610581 unclassified gene predicted gene, 37353
3 gene 32.72540 32.73761 negative MGI_C57BL6J_1921850 Mrpl47 NCBI_Gene:74600,ENSEMBL:ENSMUSG00000037531 MGI:1921850 protein coding gene mitochondrial ribosomal protein L47
3 gene 32.73610 32.73761 negative MGI_C57BL6J_3704212 Gm9859 NA NA unclassified gene predicted gene 9859
3 gene 32.73699 32.75157 positive MGI_C57BL6J_1913296 Ndufb5 NCBI_Gene:66046,ENSEMBL:ENSMUSG00000027673 MGI:1913296 protein coding gene NADH:ubiquinone oxidoreductase subunit B5
3 gene 32.81702 32.93807 positive MGI_C57BL6J_1919857 Usp13 NCBI_Gene:72607,ENSEMBL:ENSMUSG00000056900 MGI:1919857 protein coding gene ubiquitin specific peptidase 13 (isopeptidase T-3)
3 pseudogene 32.88001 32.88061 negative MGI_C57BL6J_3783022 Gm15574 ENSEMBL:ENSMUSG00000081883 MGI:3783022 pseudogene predicted gene 15574
3 gene 32.93931 32.98330 positive MGI_C57BL6J_5610687 Gm37459 ENSEMBL:ENSMUSG00000104283 MGI:5610687 lncRNA gene predicted gene, 37459
3 gene 32.94793 33.14327 negative MGI_C57BL6J_1916672 Pex5l NCBI_Gene:58869,ENSEMBL:ENSMUSG00000027674 MGI:1916672 protein coding gene peroxisomal biogenesis factor 5-like
3 gene 33.01196 33.01211 positive MGI_C57BL6J_5452991 Gm23214 ENSEMBL:ENSMUSG00000084665 MGI:5452991 snRNA gene predicted gene, 23214
3 gene 33.02478 33.08861 positive MGI_C57BL6J_1921124 4930419G24Rik NCBI_Gene:73874,ENSEMBL:ENSMUSG00000087625 MGI:1921124 lncRNA gene RIKEN cDNA 4930419G24 gene
3 gene 33.03423 33.03705 negative MGI_C57BL6J_5610671 Gm37443 ENSEMBL:ENSMUSG00000102581 MGI:5610671 unclassified gene predicted gene, 37443
3 gene 33.07392 33.07636 negative MGI_C57BL6J_5011630 Gm19445 ENSEMBL:ENSMUSG00000102498 MGI:5011630 unclassified gene predicted gene, 19445
3 pseudogene 33.19080 33.19104 positive MGI_C57BL6J_5610356 Gm37128 ENSEMBL:ENSMUSG00000103896 MGI:5610356 pseudogene predicted gene, 37128
3 gene 33.26072 33.26082 negative MGI_C57BL6J_5531356 Gm27974 ENSEMBL:ENSMUSG00000098622 MGI:5531356 miRNA gene predicted gene, 27974
3 gene 33.28312 33.28565 positive MGI_C57BL6J_5610259 Gm37031 ENSEMBL:ENSMUSG00000104384 MGI:5610259 unclassified gene predicted gene, 37031
3 gene 33.39306 33.39320 negative MGI_C57BL6J_5454557 Gm24780 ENSEMBL:ENSMUSG00000088260 MGI:5454557 snoRNA gene predicted gene, 24780
3 gene 33.39338 33.39485 negative MGI_C57BL6J_5610626 Gm37398 ENSEMBL:ENSMUSG00000104203 MGI:5610626 unclassified gene predicted gene, 37398
3 gene 33.54027 33.54342 positive MGI_C57BL6J_5593364 Gm34205 NCBI_Gene:102637377 MGI:5593364 lncRNA gene predicted gene, 34205
3 pseudogene 33.62159 33.62245 positive MGI_C57BL6J_3649050 Gm5845 NCBI_Gene:545512,ENSEMBL:ENSMUSG00000103423 MGI:3649050 pseudogene predicted gene 5845
3 pseudogene 33.68451 33.68487 negative MGI_C57BL6J_5662831 Gm42694 ENSEMBL:ENSMUSG00000104954 MGI:5662831 pseudogene predicted gene 42694
3 gene 33.68696 33.69200 negative MGI_C57BL6J_5625088 Gm42203 NCBI_Gene:105247021 MGI:5625088 lncRNA gene predicted gene, 42203
3 gene 33.70336 33.75962 negative MGI_C57BL6J_5663803 Gm43666 ENSEMBL:ENSMUSG00000104588 MGI:5663803 lncRNA gene predicted gene 43666
3 pseudogene 33.73060 33.73353 positive MGI_C57BL6J_5010796 Gm18611 NCBI_Gene:100417436,ENSEMBL:ENSMUSG00000106231 MGI:5010796 pseudogene predicted gene, 18611
3 gene 33.79983 33.81486 positive MGI_C57BL6J_1914370 Ttc14 NCBI_Gene:67120,ENSEMBL:ENSMUSG00000027677 MGI:1914370 protein coding gene tetratricopeptide repeat domain 14
3 gene 33.81076 33.84432 negative MGI_C57BL6J_1289263 Ccdc39 NCBI_Gene:51938,ENSEMBL:ENSMUSG00000027676 MGI:1289263 protein coding gene coiled-coil domain containing 39
3 gene 33.81726 33.81795 positive MGI_C57BL6J_5663277 Gm43140 ENSEMBL:ENSMUSG00000105286 MGI:5663277 lncRNA gene predicted gene 43140
3 gene 33.86681 33.89758 negative MGI_C57BL6J_1921204 4930431L21Rik ENSEMBL:ENSMUSG00000105475 MGI:1921204 lncRNA gene RIKEN cDNA 4930431L21 gene
3 gene 33.90684 33.90823 positive MGI_C57BL6J_5625089 Gm42204 NCBI_Gene:105247022 MGI:5625089 lncRNA gene predicted gene, 42204
3 gene 33.95620 33.95715 positive MGI_C57BL6J_1922225 4930502C17Rik ENSEMBL:ENSMUSG00000106584 MGI:1922225 unclassified gene RIKEN cDNA 4930502C17 gene
3 gene 33.95907 33.95920 negative MGI_C57BL6J_5452952 Gm23175 ENSEMBL:ENSMUSG00000077559 MGI:5452952 snoRNA gene predicted gene, 23175
3 gene 33.97218 33.97545 negative MGI_C57BL6J_5826470 Gm46833 NCBI_Gene:108168913 MGI:5826470 lncRNA gene predicted gene, 46833
3 pseudogene 34.00477 34.00551 negative MGI_C57BL6J_3642317 Gm9791 NCBI_Gene:100040232,ENSEMBL:ENSMUSG00000044434 MGI:3642317 pseudogene predicted pseudogene 9791
3 gene 34.00880 34.01188 negative MGI_C57BL6J_5826435 Gm46798 NCBI_Gene:108168863 MGI:5826435 lncRNA gene predicted gene, 46798
3 gene 34.01771 34.01988 negative MGI_C57BL6J_5663214 Gm43077 ENSEMBL:ENSMUSG00000105535 MGI:5663214 lncRNA gene predicted gene 43077
3 gene 34.01994 34.07032 positive MGI_C57BL6J_104860 Fxr1 NCBI_Gene:14359,ENSEMBL:ENSMUSG00000027680 MGI:104860 protein coding gene fragile X mental retardation gene 1, autosomal homolog
3 gene 34.05434 34.05543 negative MGI_C57BL6J_5663804 Gm43667 ENSEMBL:ENSMUSG00000105135 MGI:5663804 unclassified gene predicted gene 43667
3 gene 34.05602 34.08135 negative MGI_C57BL6J_1914963 Dnajc19 NCBI_Gene:67713,ENSEMBL:ENSMUSG00000027679 MGI:1914963 protein coding gene DnaJ heat shock protein family (Hsp40) member C19
3 gene 34.07066 34.07600 positive MGI_C57BL6J_5663805 Gm43668 ENSEMBL:ENSMUSG00000105176 MGI:5663805 unclassified gene predicted gene 43668
3 gene 34.10427 34.68262 positive MGI_C57BL6J_2444112 Sox2ot NCBI_Gene:320478,ENSEMBL:ENSMUSG00000105265 MGI:2444112 lncRNA gene SOX2 overlapping transcript (non-protein coding)
3 pseudogene 34.18331 34.18419 positive MGI_C57BL6J_3647478 Gm5708 NCBI_Gene:435727,ENSEMBL:ENSMUSG00000105739 MGI:3647478 pseudogene predicted gene 5708
3 gene 34.28133 34.35199 negative MGI_C57BL6J_5621390 Gm38505 NCBI_Gene:102638008,ENSEMBL:ENSMUSG00000092196 MGI:5621390 lncRNA gene predicted gene, 38505
3 gene 34.41544 34.41816 positive MGI_C57BL6J_5593758 Gm34599 NCBI_Gene:102637903,ENSEMBL:ENSMUSG00000105577 MGI:5593758 lncRNA gene predicted gene, 34599
3 gene 34.42737 34.43510 negative MGI_C57BL6J_5141980 Gm20515 ENSEMBL:ENSMUSG00000092242 MGI:5141980 lncRNA gene predicted gene 20515
3 gene 34.48143 34.48221 negative MGI_C57BL6J_5579841 Gm29135 ENSEMBL:ENSMUSG00000099437 MGI:5579841 lncRNA gene predicted gene 29135
3 gene 34.56034 34.56055 positive MGI_C57BL6J_5530785 Gm27403 ENSEMBL:ENSMUSG00000098795 MGI:5530785 unclassified non-coding RNA gene predicted gene, 27403
3 gene 34.56526 34.57220 negative MGI_C57BL6J_5662832 Gm42695 ENSEMBL:ENSMUSG00000106525 MGI:5662832 lncRNA gene predicted gene 42695
3 gene 34.59782 34.60488 negative MGI_C57BL6J_5625090 Gm42205 NCBI_Gene:105247023,ENSEMBL:ENSMUSG00000105222 MGI:5625090 lncRNA gene predicted gene, 42205
3 gene 34.63846 34.63854 positive MGI_C57BL6J_3811407 Mir1897 miRBase:MI0008314,NCBI_Gene:100316679,ENSEMBL:ENSMUSG00000104797 MGI:3811407 miRNA gene microRNA 1897
3 gene 34.64326 34.64610 positive MGI_C57BL6J_5662829 Gm42692 ENSEMBL:ENSMUSG00000104901 MGI:5662829 unclassified gene predicted gene 42692
3 gene 34.64999 34.65246 positive MGI_C57BL6J_98364 Sox2 NCBI_Gene:20674,ENSEMBL:ENSMUSG00000074637 MGI:98364 protein coding gene SRY (sex determining region Y)-box 2
3 gene 34.65318 34.65328 positive MGI_C57BL6J_5530993 Gm27611 ENSEMBL:ENSMUSG00000098254 MGI:5530993 unclassified non-coding RNA gene predicted gene, 27611
3 gene 34.66366 34.66429 negative MGI_C57BL6J_5662830 Gm42693 ENSEMBL:ENSMUSG00000105284 MGI:5662830 unclassified gene predicted gene 42693
3 gene 34.68263 34.68275 positive MGI_C57BL6J_5663343 Gm43206 ENSEMBL:ENSMUSG00000105101 MGI:5663343 unclassified gene predicted gene 43206
3 gene 34.68938 34.69292 positive MGI_C57BL6J_5594100 Gm34941 NCBI_Gene:102638356 MGI:5594100 lncRNA gene predicted gene, 34941
3 gene 34.69964 34.71666 negative MGI_C57BL6J_3781322 Gm3143 NCBI_Gene:100041108,ENSEMBL:ENSMUSG00000105153 MGI:3781322 lncRNA gene predicted gene 3143
3 gene 34.77208 34.78235 positive MGI_C57BL6J_5621394 Gm38509 NCBI_Gene:102638436,ENSEMBL:ENSMUSG00000106519 MGI:5621394 lncRNA gene predicted gene, 38509
3 gene 34.82656 34.87928 positive MGI_C57BL6J_5434743 Gm21388 NCBI_Gene:100861998,ENSEMBL:ENSMUSG00000114832 MGI:5434743 lncRNA gene predicted gene, 21388
3 gene 34.92254 34.92265 negative MGI_C57BL6J_5531088 Mir6378 miRBase:MI0021909,NCBI_Gene:102466155,ENSEMBL:ENSMUSG00000098862 MGI:5531088 miRNA gene microRNA 6378
3 gene 34.95023 34.95953 positive MGI_C57BL6J_5594414 Gm35255 NCBI_Gene:102638771 MGI:5594414 lncRNA gene predicted gene, 35255
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 36.52922 36.53233 negative MGI_C57BL6J_5663674 Gm43537 ENSEMBL:ENSMUSG00000105022 MGI:5663674 unclassified gene predicted gene 43537
3 pseudogene 36.53917 36.54010 negative MGI_C57BL6J_3650891 Gm11550 NCBI_Gene:665709,ENSEMBL:ENSMUSG00000083388 MGI:3650891 pseudogene predicted gene 11550
3 gene 36.55261 36.56573 positive MGI_C57BL6J_1355319 Exosc9 NCBI_Gene:50911,ENSEMBL:ENSMUSG00000027714 MGI:1355319 protein coding gene exosome component 9
3 gene 36.56486 36.57303 negative MGI_C57BL6J_108069 Ccna2 NCBI_Gene:12428,ENSEMBL:ENSMUSG00000027715 MGI:108069 protein coding gene cyclin A2
3 gene 36.57314 36.61349 negative MGI_C57BL6J_1918742 Bbs7 NCBI_Gene:71492,ENSEMBL:ENSMUSG00000037325 MGI:1918742 protein coding gene Bardet-Biedl syndrome 7 (human)
3 gene 36.62048 36.69022 negative MGI_C57BL6J_109526 Trpc3 NCBI_Gene:22065,ENSEMBL:ENSMUSG00000027716 MGI:109526 protein coding gene transient receptor potential cation channel, subfamily C, member 3
3 gene 36.65407 36.65501 negative MGI_C57BL6J_5595015 Gm35856 NCBI_Gene:102639576 MGI:5595015 lncRNA gene predicted gene, 35856
3 pseudogene 36.69480 36.69505 negative MGI_C57BL6J_3651607 Gm12377 ENSEMBL:ENSMUSG00000082548 MGI:3651607 pseudogene predicted gene 12377
3 pseudogene 36.82435 36.82506 negative MGI_C57BL6J_3651608 Gm12376 NCBI_Gene:100417988,ENSEMBL:ENSMUSG00000084027 MGI:3651608 pseudogene predicted gene 12376
3 gene 36.86306 37.05303 positive MGI_C57BL6J_2444631 4932438A13Rik NCBI_Gene:229227,ENSEMBL:ENSMUSG00000037270 MGI:2444631 protein coding gene RIKEN cDNA 4932438A13 gene
3 gene 37.05221 37.06003 negative MGI_C57BL6J_3650531 Gm12531 ENSEMBL:ENSMUSG00000086090 MGI:3650531 lncRNA gene predicted gene 12531
3 gene 37.06309 37.12193 positive MGI_C57BL6J_103258 Adad1 NCBI_Gene:21744,ENSEMBL:ENSMUSG00000027719 MGI:103258 protein coding gene adenosine deaminase domain containing 1 (testis specific)
3 pseudogene 37.07756 37.07891 positive MGI_C57BL6J_3651489 Gm12582 NCBI_Gene:652987,ENSEMBL:ENSMUSG00000081705 MGI:3651489 pseudogene predicted gene 12582
3 pseudogene 37.10808 37.10933 positive MGI_C57BL6J_3651485 Gm12583 NCBI_Gene:100416060,ENSEMBL:ENSMUSG00000082878 MGI:3651485 pseudogene predicted gene 12583
3 pseudogene 37.11673 37.11784 positive MGI_C57BL6J_3651486 Gm12584 ENSEMBL:ENSMUSG00000083857 MGI:3651486 pseudogene predicted gene 12584
3 gene 37.12052 37.12596 negative MGI_C57BL6J_96548 Il2 NCBI_Gene:16183,ENSEMBL:ENSMUSG00000027720 MGI:96548 protein coding gene interleukin 2
3 gene 37.16972 37.17665 negative MGI_C57BL6J_5595159 Gm36000 NCBI_Gene:102639768 MGI:5595159 lncRNA gene predicted gene, 36000
3 gene 37.18218 37.18860 positive MGI_C57BL6J_3650618 Gm12532 NCBI_Gene:102639848,ENSEMBL:ENSMUSG00000084754 MGI:3650618 lncRNA gene predicted gene 12532
3 gene 37.22276 37.23264 negative MGI_C57BL6J_1890474 Il21 NCBI_Gene:60505,ENSEMBL:ENSMUSG00000027718 MGI:1890474 protein coding gene interleukin 21
3 gene 37.22538 37.22711 positive MGI_C57BL6J_5595327 Gm36168 NCBI_Gene:102639985 MGI:5595327 lncRNA gene predicted gene, 36168
3 gene 37.23133 37.23247 positive MGI_C57BL6J_3650303 Gm12534 ENSEMBL:ENSMUSG00000086517 MGI:3650303 lncRNA gene predicted gene 12534
3 gene 37.23287 37.23334 positive MGI_C57BL6J_5663959 Gm43822 ENSEMBL:ENSMUSG00000104998 MGI:5663959 unclassified gene predicted gene 43822
3 gene 37.25678 37.25689 negative MGI_C57BL6J_5453946 Gm24169 ENSEMBL:ENSMUSG00000094007 MGI:5453946 miRNA gene predicted gene, 24169
3 gene 37.30775 37.31271 negative MGI_C57BL6J_2677454 Cetn4 NCBI_Gene:207175,ENSEMBL:ENSMUSG00000045031 MGI:2677454 protein coding gene centrin 4
3 gene 37.31249 37.32145 positive MGI_C57BL6J_2686651 Bbs12 NCBI_Gene:241950,ENSEMBL:ENSMUSG00000051444 MGI:2686651 protein coding gene Bardet-Biedl syndrome 12 (human)
3 gene 37.31252 37.40487 positive MGI_C57BL6J_5663576 Gm43439 ENSEMBL:ENSMUSG00000106407 MGI:5663576 lncRNA gene predicted gene 43439
3 pseudogene 37.31253 37.32919 positive MGI_C57BL6J_3651849 Gm12540 NCBI_Gene:102640067,ENSEMBL:ENSMUSG00000083353 MGI:3651849 pseudogene predicted gene 12540
3 gene 37.33329 37.35103 negative MGI_C57BL6J_3649376 Fgf2os NCBI_Gene:329626,ENSEMBL:ENSMUSG00000054779 MGI:3649376 antisense lncRNA gene fibroblast growth factor 2, opposite strand
3 gene 37.33902 37.34152 positive MGI_C57BL6J_5663625 Gm43488 ENSEMBL:ENSMUSG00000105063 MGI:5663625 unclassified gene predicted gene 43488
3 gene 37.34835 37.41011 positive MGI_C57BL6J_95516 Fgf2 NCBI_Gene:14173,ENSEMBL:ENSMUSG00000037225 MGI:95516 protein coding gene fibroblast growth factor 2
3 gene 37.39221 37.39510 negative MGI_C57BL6J_5663060 Gm42923 ENSEMBL:ENSMUSG00000105134 MGI:5663060 unclassified gene predicted gene 42923
3 gene 37.40491 37.42021 negative MGI_C57BL6J_2387618 Nudt6 NCBI_Gene:229228,ENSEMBL:ENSMUSG00000050174 MGI:2387618 protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 6
3 gene 37.41990 37.57910 positive MGI_C57BL6J_1927170 Spata5 NCBI_Gene:57815,ENSEMBL:ENSMUSG00000027722 MGI:1927170 protein coding gene spermatogenesis associated 5
3 gene 37.48883 37.49479 positive MGI_C57BL6J_5663621 Gm43484 ENSEMBL:ENSMUSG00000106166 MGI:5663621 unclassified gene predicted gene 43484
3 gene 37.54188 37.60239 negative MGI_C57BL6J_5595571 Gm36412 NCBI_Gene:102640314 MGI:5595571 lncRNA gene predicted gene, 36412
3 pseudogene 37.55618 37.55650 negative MGI_C57BL6J_3652207 Gm12564 ENSEMBL:ENSMUSG00000080723 MGI:3652207 pseudogene predicted gene 12564
3 pseudogene 37.59942 37.60007 negative MGI_C57BL6J_3652206 Gm12565 NCBI_Gene:665778,ENSEMBL:ENSMUSG00000081093 MGI:3652206 pseudogene predicted gene 12565
3 gene 37.60989 37.61528 positive MGI_C57BL6J_1923197 4930594O21Rik NCBI_Gene:75947,ENSEMBL:ENSMUSG00000085677 MGI:1923197 lncRNA gene RIKEN cDNA 4930594O21 gene
3 gene 37.63858 37.64066 negative MGI_C57BL6J_5663059 Gm42922 ENSEMBL:ENSMUSG00000104605 MGI:5663059 unclassified gene predicted gene 42922
3 gene 37.63995 37.64460 positive MGI_C57BL6J_1345139 Spry1 NCBI_Gene:24063,ENSEMBL:ENSMUSG00000037211 MGI:1345139 protein coding gene sprouty RTK signaling antagonist 1
3 gene 37.64461 37.64795 positive MGI_C57BL6J_5663957 Gm43820 ENSEMBL:ENSMUSG00000106062 MGI:5663957 unclassified gene predicted gene 43820
3 gene 37.65268 37.65652 negative MGI_C57BL6J_5826436 Gm46799 NCBI_Gene:108168864 MGI:5826436 lncRNA gene predicted gene, 46799
3 gene 37.69046 37.69486 negative MGI_C57BL6J_5625096 Gm42211 NCBI_Gene:105247029 MGI:5625096 lncRNA gene predicted gene, 42211
3 gene 37.70802 37.71121 positive MGI_C57BL6J_5663551 Gm43414 ENSEMBL:ENSMUSG00000104935 MGI:5663551 unclassified gene predicted gene 43414
3 gene 37.71419 37.72449 negative MGI_C57BL6J_3646006 Gm5148 NCBI_Gene:381438,ENSEMBL:ENSMUSG00000058174 MGI:3646006 protein coding gene predicted gene 5148
3 pseudogene 37.71471 37.71522 positive MGI_C57BL6J_3705429 Rps23-ps1 NCBI_Gene:100038875,ENSEMBL:ENSMUSG00000100755 MGI:3705429 pseudogene ribosomal protein S23, pseudogene 1
3 gene 37.72423 37.74132 positive MGI_C57BL6J_5595779 Gm36620 NCBI_Gene:102640592 MGI:5595779 lncRNA gene predicted gene, 36620
3 pseudogene 37.73468 37.73514 positive MGI_C57BL6J_3643738 Rpl31-ps15 NCBI_Gene:626367,ENSEMBL:ENSMUSG00000097304 MGI:3643738 pseudogene ribosomal protein L31, pseudogene 15
3 gene 37.75320 37.77440 positive MGI_C57BL6J_5625095 Gm42210 NCBI_Gene:105247028 MGI:5625095 lncRNA gene predicted gene, 42210
3 gene 37.76104 37.76730 positive MGI_C57BL6J_5663058 Gm42921 ENSEMBL:ENSMUSG00000106441 MGI:5663058 lncRNA gene predicted gene 42921
3 gene 37.80254 37.80265 negative MGI_C57BL6J_5456181 Gm26404 ENSEMBL:ENSMUSG00000089123 MGI:5456181 snoRNA gene predicted gene, 26404
3 gene 37.82822 37.84829 positive MGI_C57BL6J_1925294 4930556A17Rik NCBI_Gene:102640520 MGI:1925294 lncRNA gene RIKEN cDNA 4930556A17 gene
3 gene 37.83847 37.83957 positive MGI_C57BL6J_5662889 Gm42752 ENSEMBL:ENSMUSG00000106621 MGI:5662889 unclassified gene predicted gene 42752
3 gene 37.84180 37.84307 positive MGI_C57BL6J_5662890 Gm42753 ENSEMBL:ENSMUSG00000105252 MGI:5662890 unclassified gene predicted gene 42753
3 gene 37.89881 37.99273 positive MGI_C57BL6J_5434111 Gm20755 NCBI_Gene:626410,ENSEMBL:ENSMUSG00000106461 MGI:5434111 lncRNA gene predicted gene, 20755
3 pseudogene 37.95961 37.96009 negative MGI_C57BL6J_3643378 Gm7799 ENSEMBL:ENSMUSG00000087457 MGI:3643378 pseudogene predicted gene 7799
3 gene 37.98279 37.98335 positive MGI_C57BL6J_5662888 Gm42751 ENSEMBL:ENSMUSG00000105099 MGI:5662888 unclassified gene predicted gene 42751
3 gene 37.99511 37.99524 negative MGI_C57BL6J_5452676 Gm22899 ENSEMBL:ENSMUSG00000077728 MGI:5452676 snoRNA gene predicted gene, 22899
3 gene 38.09463 38.13019 negative MGI_C57BL6J_5663958 Gm43821 ENSEMBL:ENSMUSG00000105219 MGI:5663958 lncRNA gene predicted gene 43821
3 pseudogene 38.10123 38.10798 negative MGI_C57BL6J_3643358 Rpl21-ps10 NCBI_Gene:665821,ENSEMBL:ENSMUSG00000105359 MGI:3643358 pseudogene ribosomal protein L21, pseudogene 10
3 gene 38.15191 38.15915 positive MGI_C57BL6J_5595839 Gm36680 NCBI_Gene:102640666 MGI:5595839 lncRNA gene predicted gene, 36680
3 gene 38.20315 38.20812 negative MGI_C57BL6J_1918592 5430434I15Rik NCBI_Gene:71342,ENSEMBL:ENSMUSG00000106002 MGI:1918592 lncRNA gene RIKEN cDNA 5430434I15 gene
3 pseudogene 38.22345 38.22382 positive MGI_C57BL6J_3781143 Gm2965 NCBI_Gene:100040785,ENSEMBL:ENSMUSG00000105943 MGI:3781143 pseudogene predicted gene 2965
3 pseudogene 38.25402 38.25480 positive MGI_C57BL6J_5010140 Gm17955 NCBI_Gene:100416169 MGI:5010140 pseudogene predicted gene, 17955
3 gene 38.26784 38.26808 negative MGI_C57BL6J_5455351 Gm25574 ENSEMBL:ENSMUSG00000092986 MGI:5455351 unclassified non-coding RNA gene predicted gene, 25574
3 gene 38.36615 38.36888 negative MGI_C57BL6J_5625098 Gm42213 NCBI_Gene:105247031 MGI:5625098 lncRNA gene predicted gene, 42213
3 gene 38.36940 38.37364 positive MGI_C57BL6J_5663057 Gm42920 ENSEMBL:ENSMUSG00000106008 MGI:5663057 lncRNA gene predicted gene 42920
3 gene 38.41897 38.42015 negative MGI_C57BL6J_1917958 3830422I06Rik ENSEMBL:ENSMUSG00000106485 MGI:1917958 unclassified gene RIKEN cDNA 3830422I06 gene
3 gene 38.42655 38.44387 negative MGI_C57BL6J_5595982 Gm36823 NCBI_Gene:102640855,ENSEMBL:ENSMUSG00000105516 MGI:5595982 lncRNA gene predicted gene, 36823
3 pseudogene 38.43895 38.43984 negative MGI_C57BL6J_3646285 Gm7815 NCBI_Gene:665838,ENSEMBL:ENSMUSG00000106201 MGI:3646285 pseudogene predicted gene 7815
3 gene 38.44926 38.48486 negative MGI_C57BL6J_2139777 Ankrd50 NCBI_Gene:99696,ENSEMBL:ENSMUSG00000044864 MGI:2139777 protein coding gene ankyrin repeat domain 50
3 pseudogene 38.55797 38.55886 negative MGI_C57BL6J_3779766 Gm7824 NCBI_Gene:665855,ENSEMBL:ENSMUSG00000105360 MGI:3779766 pseudogene predicted gene 7824
3 gene 38.55811 38.55821 negative MGI_C57BL6J_5454239 Gm24462 ENSEMBL:ENSMUSG00000076385 MGI:5454239 miRNA gene predicted gene, 24462
3 gene 38.61425 38.61556 positive MGI_C57BL6J_5663675 Gm43538 ENSEMBL:ENSMUSG00000106168 MGI:5663675 lncRNA gene predicted gene 43538
3 gene 38.66361 38.70922 positive MGI_C57BL6J_5589038 Gm29879 NCBI_Gene:102631576 MGI:5589038 lncRNA gene predicted gene, 29879
3 gene 38.76048 38.76195 negative MGI_C57BL6J_5589118 Gm29959 NCBI_Gene:102631683 MGI:5589118 lncRNA gene predicted gene, 29959
3 gene 38.87457 38.88826 negative MGI_C57BL6J_2441892 C230034O21Rik NCBI_Gene:102632538,ENSEMBL:ENSMUSG00000086181 MGI:2441892 lncRNA gene RIKEN cDNA C230034O21 gene
3 gene 38.88563 39.01199 positive MGI_C57BL6J_3045256 Fat4 NCBI_Gene:329628,ENSEMBL:ENSMUSG00000046743 MGI:3045256 protein coding gene FAT atypical cadherin 4
3 gene 39.00860 39.00968 negative MGI_C57BL6J_5663676 Gm43539 ENSEMBL:ENSMUSG00000105910 MGI:5663676 lncRNA gene predicted gene 43539
3 pseudogene 39.12853 39.12891 negative MGI_C57BL6J_5663445 Gm43308 ENSEMBL:ENSMUSG00000104792 MGI:5663445 pseudogene predicted gene 43308
3 gene 39.15083 39.15967 negative MGI_C57BL6J_5589170 Gm30011 NCBI_Gene:102631750 MGI:5589170 lncRNA gene predicted gene, 30011
3 pseudogene 39.21756 39.21785 negative MGI_C57BL6J_5663145 Gm43008 ENSEMBL:ENSMUSG00000107333 MGI:5663145 pseudogene predicted gene 43008
3 gene 39.27713 39.30593 positive MGI_C57BL6J_5625099 Gm42214 NCBI_Gene:105247032 MGI:5625099 lncRNA gene predicted gene, 42214
3 pseudogene 39.35737 39.35913 negative MGI_C57BL6J_3704215 Gm9845 NCBI_Gene:100040853,ENSEMBL:ENSMUSG00000050533 MGI:3704215 pseudogene predicted pseudogene 9845
3 pseudogene 39.44389 39.44435 positive MGI_C57BL6J_5295673 Gm20566 NCBI_Gene:100047050 MGI:5295673 pseudogene predicted gene, 20566
3 gene 39.46078 39.59865 positive MGI_C57BL6J_5589222 Gm30063 NCBI_Gene:102631823 MGI:5589222 lncRNA gene predicted gene, 30063
3 gene 39.52552 39.53415 negative MGI_C57BL6J_5625100 Gm42215 NCBI_Gene:105247033 MGI:5625100 lncRNA gene predicted gene, 42215
3 gene 39.63596 39.63608 negative MGI_C57BL6J_4422060 n-R5s195 ENSEMBL:ENSMUSG00000093952 MGI:4422060 rRNA gene nuclear encoded rRNA 5S 195
3 gene 39.63606 39.63878 positive MGI_C57BL6J_5662918 Gm42781 ENSEMBL:ENSMUSG00000106786 MGI:5662918 unclassified gene predicted gene 42781
3 gene 39.66629 39.66645 positive MGI_C57BL6J_5453573 Gm23796 ENSEMBL:ENSMUSG00000065945 MGI:5453573 snRNA gene predicted gene, 23796
3 gene 39.71315 39.72565 positive MGI_C57BL6J_5826471 Gm46834 NCBI_Gene:108168914 MGI:5826471 lncRNA gene predicted gene, 46834
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 46.28983 46.28996 positive MGI_C57BL6J_5455858 Gm26081 ENSEMBL:ENSMUSG00000077256 MGI:5455858 snoRNA gene predicted gene, 26081
3 pseudogene 46.41340 46.41412 positive MGI_C57BL6J_5011028 Gm18843 NCBI_Gene:100417811,ENSEMBL:ENSMUSG00000104511 MGI:5011028 pseudogene predicted gene, 18843
3 gene 46.44085 46.44822 negative MGI_C57BL6J_3643087 Pabpc4l NCBI_Gene:241989,ENSEMBL:ENSMUSG00000090919 MGI:3643087 protein coding gene poly(A) binding protein, cytoplasmic 4-like
3 pseudogene 46.62112 46.62136 positive MGI_C57BL6J_5610673 Gm37445 ENSEMBL:ENSMUSG00000102589 MGI:5610673 pseudogene predicted gene, 37445
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 pseudogene 47.45961 47.46034 negative MGI_C57BL6J_3780399 Gm2229 NCBI_Gene:100039426,ENSEMBL:ENSMUSG00000103798 MGI:3780399 pseudogene predicted gene 2229
3 pseudogene 48.02601 48.02676 negative MGI_C57BL6J_3648898 Gm7977 NCBI_Gene:666202,ENSEMBL:ENSMUSG00000103257 MGI:3648898 pseudogene predicted gene 7977
3 gene 48.07834 48.07845 positive MGI_C57BL6J_5610523 Gm37295 ENSEMBL:ENSMUSG00000104110 MGI:5610523 unclassified gene predicted gene, 37295
3 gene 48.54642 48.57947 positive MGI_C57BL6J_5826472 Gm46835 NCBI_Gene:108168915 MGI:5826472 lncRNA gene predicted gene, 46835
3 gene 48.60573 48.60910 negative MGI_C57BL6J_1913582 1700018B24Rik NCBI_Gene:66332,ENSEMBL:ENSMUSG00000037910 MGI:1913582 lncRNA gene RIKEN cDNA 1700018B24 gene
3 gene 48.74851 48.76095 negative MGI_C57BL6J_5610418 Gm37190 ENSEMBL:ENSMUSG00000102181 MGI:5610418 lncRNA gene predicted gene, 37190
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 48.95472 48.95488 positive MGI_C57BL6J_5453288 Gm23511 ENSEMBL:ENSMUSG00000065018 MGI:5453288 snRNA gene predicted gene, 23511
3 gene 49.06237 49.09636 positive MGI_C57BL6J_5590574 Gm31415 NCBI_Gene:102633632,ENSEMBL:ENSMUSG00000102263 MGI:5590574 lncRNA gene predicted gene, 31415
3 gene 49.13746 49.13853 positive MGI_C57BL6J_5611047 Gm37819 ENSEMBL:ENSMUSG00000104186 MGI:5611047 unclassified gene predicted gene, 37819
3 pseudogene 49.20771 49.20807 negative MGI_C57BL6J_5610912 Gm37684 ENSEMBL:ENSMUSG00000103027 MGI:5610912 pseudogene predicted gene, 37684
3 gene 49.32568 49.36736 positive MGI_C57BL6J_5295664 Gm20557 NCBI_Gene:329633,ENSEMBL:ENSMUSG00000102679 MGI:5295664 lncRNA gene predicted gene, 20557
3 pseudogene 49.38115 49.38285 negative MGI_C57BL6J_3643624 Gm5846 NCBI_Gene:545519,ENSEMBL:ENSMUSG00000104309 MGI:3643624 pseudogene predicted gene 5846
3 pseudogene 49.40082 49.46744 negative MGI_C57BL6J_3780091 Gm9683 NCBI_Gene:676568 MGI:3780091 pseudogene predicted gene 9683
3 gene 49.49135 49.49148 positive MGI_C57BL6J_5452257 Gm22480 ENSEMBL:ENSMUSG00000084517 MGI:5452257 snoRNA gene predicted gene, 22480
3 pseudogene 49.53075 49.53131 positive MGI_C57BL6J_5610652 Gm37424 ENSEMBL:ENSMUSG00000104437 MGI:5610652 pseudogene predicted gene, 37424
3 pseudogene 49.60356 49.60388 positive MGI_C57BL6J_5611489 Gm38261 ENSEMBL:ENSMUSG00000102731 MGI:5611489 pseudogene predicted gene, 38261
3 pseudogene 49.60423 49.60447 positive MGI_C57BL6J_5611316 Gm38088 ENSEMBL:ENSMUSG00000103249 MGI:5611316 pseudogene predicted gene, 38088
3 pseudogene 49.63244 49.63297 negative MGI_C57BL6J_3780498 Gm2328 NCBI_Gene:100039587,ENSEMBL:ENSMUSG00000104134 MGI:3780498 pseudogene predicted gene 2328
3 pseudogene 49.64348 49.64413 positive MGI_C57BL6J_5588900 Gm29741 NCBI_Gene:101055903,ENSEMBL:ENSMUSG00000103568 MGI:5588900 pseudogene predicted gene, 29741
3 gene 49.65876 49.65887 positive MGI_C57BL6J_5452873 Gm23096 ENSEMBL:ENSMUSG00000065381 MGI:5452873 snRNA gene predicted gene, 23096
3 gene 49.74329 49.75738 negative MGI_C57BL6J_1920423 Pcdh18 NCBI_Gene:73173,ENSEMBL:ENSMUSG00000037892 MGI:1920423 protein coding gene protocadherin 18
3 pseudogene 49.78043 49.78089 negative MGI_C57BL6J_5610778 Gm37550 ENSEMBL:ENSMUSG00000102943 MGI:5610778 pseudogene predicted gene, 37550
3 gene 49.89253 50.49909 negative MGI_C57BL6J_1347355 Slc7a11 NCBI_Gene:26570,ENSEMBL:ENSMUSG00000027737 MGI:1347355 protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
3 gene 50.00197 50.01078 positive MGI_C57BL6J_5611082 Gm37854 ENSEMBL:ENSMUSG00000102892 MGI:5611082 lncRNA gene predicted gene, 37854
3 gene 50.01177 50.02624 negative MGI_C57BL6J_5622927 Gm40042 NCBI_Gene:105244434 MGI:5622927 lncRNA gene predicted gene, 40042
3 pseudogene 50.02967 50.02999 positive MGI_C57BL6J_5611054 Gm37826 ENSEMBL:ENSMUSG00000104457 MGI:5611054 pseudogene predicted gene, 37826
3 pseudogene 50.16666 50.16689 negative MGI_C57BL6J_5610920 Gm37692 ENSEMBL:ENSMUSG00000104349 MGI:5610920 pseudogene predicted gene, 37692
3 pseudogene 50.25485 50.25544 positive MGI_C57BL6J_3780515 Gm2345 NCBI_Gene:100039628,ENSEMBL:ENSMUSG00000102167 MGI:3780515 pseudogene predicted gene 2345
3 gene 50.40028 50.40428 negative MGI_C57BL6J_5610726 Gm37498 ENSEMBL:ENSMUSG00000103907 MGI:5610726 unclassified gene predicted gene, 37498
3 gene 50.51640 50.60731 negative MGI_C57BL6J_3643374 Gm6209 NCBI_Gene:621304,ENSEMBL:ENSMUSG00000102715 MGI:3643374 lncRNA gene predicted gene 6209
3 gene 50.57519 50.57652 negative MGI_C57BL6J_1923259 5830415G21Rik ENSEMBL:ENSMUSG00000102895 MGI:1923259 unclassified gene RIKEN cDNA 5830415G21 gene
3 pseudogene 50.59799 50.59850 negative MGI_C57BL6J_5611465 Gm38237 NCBI_Gene:108168851,ENSEMBL:ENSMUSG00000103745 MGI:5611465 pseudogene predicted gene, 38237
3 gene 50.62435 50.62841 negative MGI_C57BL6J_5610427 Gm37199 ENSEMBL:ENSMUSG00000104068 MGI:5610427 unclassified gene predicted gene, 37199
3 gene 50.67970 50.68340 negative MGI_C57BL6J_5610689 Gm37461 ENSEMBL:ENSMUSG00000104281 MGI:5610689 unclassified gene predicted gene, 37461
3 gene 50.70690 50.71189 negative MGI_C57BL6J_5622928 Gm40043 NCBI_Gene:105244435 MGI:5622928 lncRNA gene predicted gene, 40043
3 gene 50.83858 50.83872 negative MGI_C57BL6J_5454280 Gm24503 ENSEMBL:ENSMUSG00000089079 MGI:5454280 snoRNA gene predicted gene, 24503
3 gene 50.88324 50.88889 negative MGI_C57BL6J_5610776 Gm37548 NCBI_Gene:105244436,ENSEMBL:ENSMUSG00000103012 MGI:5610776 lncRNA gene predicted gene, 37548
3 gene 50.91889 50.92153 negative MGI_C57BL6J_5611071 Gm37843 ENSEMBL:ENSMUSG00000102614 MGI:5611071 unclassified gene predicted gene, 37843
3 gene 50.96656 50.96677 positive MGI_C57BL6J_2139603 AA672641 NA NA unclassified gene expressed sequence AA672641
3 gene 50.97754 50.97881 negative MGI_C57BL6J_5610437 Gm37209 ENSEMBL:ENSMUSG00000103652 MGI:5610437 unclassified gene predicted gene, 37209
3 gene 51.03335 51.04284 negative MGI_C57BL6J_5594915 Gm35756 NCBI_Gene:102639442 MGI:5594915 lncRNA gene predicted gene, 35756
3 gene 51.05891 51.08934 negative MGI_C57BL6J_5579936 Gm29230 NCBI_Gene:102639521,ENSEMBL:ENSMUSG00000102067 MGI:5579936 lncRNA gene predicted gene 29230
3 gene 51.10366 51.10517 positive MGI_C57BL6J_5611474 Gm38246 ENSEMBL:ENSMUSG00000103464 MGI:5611474 lncRNA gene predicted gene, 38246
3 gene 51.12669 51.12894 negative MGI_C57BL6J_5595050 Gm35891 NCBI_Gene:102639626 MGI:5595050 lncRNA gene predicted gene, 35891
3 gene 51.21847 51.22033 negative MGI_C57BL6J_5622929 Gm40044 NCBI_Gene:105244437 MGI:5622929 lncRNA gene predicted gene, 40044
3 gene 51.22445 51.25165 positive MGI_C57BL6J_109382 Noct NCBI_Gene:12457,ENSEMBL:ENSMUSG00000023087 MGI:109382 protein coding gene nocturnin
3 gene 51.23192 51.23438 positive MGI_C57BL6J_5611585 Gm38357 ENSEMBL:ENSMUSG00000103313 MGI:5611585 unclassified gene predicted gene, 38357
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 51.51099 51.51430 positive MGI_C57BL6J_5595167 Gm36008 NCBI_Gene:102639777 MGI:5595167 lncRNA gene predicted gene, 36008
3 gene 51.51532 51.56088 negative MGI_C57BL6J_1920501 Setd7 NCBI_Gene:73251,ENSEMBL:ENSMUSG00000037111 MGI:1920501 protein coding gene SET domain containing (lysine methyltransferase) 7
3 gene 51.55754 51.55965 negative MGI_C57BL6J_5611428 Gm38200 ENSEMBL:ENSMUSG00000102466 MGI:5611428 unclassified gene predicted gene, 38200
3 gene 51.55976 51.56712 positive MGI_C57BL6J_1923230 5031434O11Rik NCBI_Gene:100039684,ENSEMBL:ENSMUSG00000097885 MGI:1923230 lncRNA gene RIKEN cDNA 5031434O11 gene
3 pseudogene 51.57111 51.57142 negative MGI_C57BL6J_5611562 Gm38334 ENSEMBL:ENSMUSG00000104001 MGI:5611562 pseudogene predicted gene, 38334
3 gene 51.58231 51.58285 positive MGI_C57BL6J_1918620 5430433H01Rik ENSEMBL:ENSMUSG00000104075 MGI:1918620 unclassified gene RIKEN cDNA 5430433H01 gene
3 pseudogene 51.63649 51.63705 negative MGI_C57BL6J_5611475 Gm38247 NCBI_Gene:108168852,ENSEMBL:ENSMUSG00000104166 MGI:5611475 pseudogene predicted gene, 38247
3 gene 51.66036 51.68268 positive MGI_C57BL6J_2448481 Mgst2 NCBI_Gene:211666,ENSEMBL:ENSMUSG00000074604 MGI:2448481 protein coding gene microsomal glutathione S-transferase 2
3 gene 51.67280 51.67390 positive MGI_C57BL6J_5610489 Gm37261 ENSEMBL:ENSMUSG00000103527 MGI:5610489 unclassified gene predicted gene, 37261
3 gene 51.68591 52.10509 negative MGI_C57BL6J_2389461 Maml3 NCBI_Gene:433586,ENSEMBL:ENSMUSG00000061143 MGI:2389461 protein coding gene mastermind like transcriptional coactivator 3
3 gene 51.69372 51.69509 positive MGI_C57BL6J_3642905 Gm10729 ENSEMBL:ENSMUSG00000074603 MGI:3642905 protein coding gene predicted gene 10729
3 gene 51.70772 51.71225 positive MGI_C57BL6J_5826440 Gm46803 NCBI_Gene:108168869 MGI:5826440 lncRNA gene predicted gene, 46803
3 gene 51.75712 51.76209 negative MGI_C57BL6J_5610570 Gm37342 ENSEMBL:ENSMUSG00000102732 MGI:5610570 unclassified gene predicted gene, 37342
3 gene 51.81295 51.81931 positive MGI_C57BL6J_5610457 Gm37229 ENSEMBL:ENSMUSG00000102539 MGI:5610457 lncRNA gene predicted gene, 37229
3 gene 51.82891 51.82903 positive MGI_C57BL6J_4422061 n-R5s196 ENSEMBL:ENSMUSG00000065070 MGI:4422061 rRNA gene nuclear encoded rRNA 5S 196
3 gene 51.82939 51.83040 negative MGI_C57BL6J_1920491 3110080O07Rik ENSEMBL:ENSMUSG00000103284 MGI:1920491 unclassified gene RIKEN cDNA 3110080O07 gene
3 gene 51.86735 51.86856 negative MGI_C57BL6J_5611228 Gm38000 ENSEMBL:ENSMUSG00000103484 MGI:5611228 unclassified gene predicted gene, 38000
3 gene 51.87299 51.87584 negative MGI_C57BL6J_5610903 Gm37675 ENSEMBL:ENSMUSG00000102620 MGI:5610903 unclassified gene predicted gene, 37675
3 gene 51.88428 51.88689 negative MGI_C57BL6J_5611480 Gm38252 ENSEMBL:ENSMUSG00000102786 MGI:5611480 unclassified gene predicted gene, 38252
3 pseudogene 51.90699 51.90882 negative MGI_C57BL6J_3708672 Gm10728 ENSEMBL:ENSMUSG00000103701 MGI:3708672 pseudogene predicted gene 10728
3 gene 51.98094 51.99007 positive MGI_C57BL6J_5012274 Gm20089 ENSEMBL:ENSMUSG00000104161 MGI:5012274 lncRNA gene predicted gene, 20089
3 gene 51.98763 51.98985 negative MGI_C57BL6J_5611283 Gm38055 ENSEMBL:ENSMUSG00000102147 MGI:5611283 unclassified gene predicted gene, 38055
3 gene 51.99134 51.99196 negative MGI_C57BL6J_5610754 Gm37526 ENSEMBL:ENSMUSG00000103784 MGI:5610754 unclassified gene predicted gene, 37526
3 gene 52.00074 52.00402 negative MGI_C57BL6J_5610693 Gm37465 ENSEMBL:ENSMUSG00000102423 MGI:5610693 unclassified gene predicted gene, 37465
3 gene 52.05729 52.06424 negative MGI_C57BL6J_2444420 C130089K02Rik ENSEMBL:ENSMUSG00000104339 MGI:2444420 unclassified gene RIKEN cDNA C130089K02 gene
3 gene 52.07159 52.07339 negative MGI_C57BL6J_1921741 5430420F09Rik ENSEMBL:ENSMUSG00000102808 MGI:1921741 unclassified gene RIKEN cDNA 5430420F09 gene
3 gene 52.13405 52.22200 negative MGI_C57BL6J_5610430 Gm37202 ENSEMBL:ENSMUSG00000103655 MGI:5610430 lncRNA gene predicted gene, 37202
3 gene 52.17108 52.18013 negative MGI_C57BL6J_5589233 Gm30074 NCBI_Gene:102631843,ENSEMBL:ENSMUSG00000103726 MGI:5589233 lncRNA gene predicted gene, 30074
3 gene 52.18657 52.18796 positive MGI_C57BL6J_5611360 Gm38132 ENSEMBL:ENSMUSG00000104055 MGI:5611360 lncRNA gene predicted gene, 38132
3 gene 52.19825 52.20049 positive MGI_C57BL6J_5610398 Gm37170 ENSEMBL:ENSMUSG00000103170 MGI:5610398 lncRNA gene predicted gene, 37170
3 pseudogene 52.23684 52.24694 negative MGI_C57BL6J_3031232 Olfr1398-ps1 NCBI_Gene:404507,ENSEMBL:ENSMUSG00000102510 MGI:3031232 pseudogene olfactory receptor 1398, pseudogene 1
3 gene 52.23745 52.25650 positive MGI_C57BL6J_5589284 Gm30125 NCBI_Gene:102631910 MGI:5589284 lncRNA gene predicted gene, 30125
3 gene 52.26834 52.35322 positive MGI_C57BL6J_1890077 Foxo1 NCBI_Gene:56458,ENSEMBL:ENSMUSG00000044167 MGI:1890077 protein coding gene forkhead box O1
3 gene 52.26843 52.26944 negative MGI_C57BL6J_5141867 Gm20402 ENSEMBL:ENSMUSG00000092405 MGI:5141867 lncRNA gene predicted gene 20402
3 gene 52.28224 52.28431 positive MGI_C57BL6J_5611262 Gm38034 ENSEMBL:ENSMUSG00000102844 MGI:5611262 unclassified gene predicted gene, 38034
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 52.46717 52.49327 positive MGI_C57BL6J_5621422 Gm38537 NCBI_Gene:102641152 MGI:5621422 lncRNA gene predicted gene, 38537
3 gene 52.50277 52.55022 positive MGI_C57BL6J_5589332 Gm30173 NCBI_Gene:102631981,ENSEMBL:ENSMUSG00000103965 MGI:5589332 lncRNA gene predicted gene, 30173
3 gene 52.58013 52.58907 positive MGI_C57BL6J_5622932 Gm40047 NCBI_Gene:105244440 MGI:5622932 lncRNA gene predicted gene, 40047
3 pseudogene 52.61282 52.61402 positive MGI_C57BL6J_3704216 Gm10293 NCBI_Gene:100039762,ENSEMBL:ENSMUSG00000070490 MGI:3704216 pseudogene predicted pseudogene 10293
3 gene 52.64989 52.70971 positive MGI_C57BL6J_5589394 Gm30235 NCBI_Gene:102632062 MGI:5589394 lncRNA gene predicted gene, 30235
3 gene 52.72265 52.72275 negative MGI_C57BL6J_5452575 Gm22798 ENSEMBL:ENSMUSG00000065926 MGI:5452575 snRNA gene predicted gene, 22798
3 gene 52.73972 52.77666 positive MGI_C57BL6J_3780614 Gm2447 NCBI_Gene:329639,ENSEMBL:ENSMUSG00000102785 MGI:3780614 lncRNA gene predicted gene 2447
3 gene 52.78900 52.79781 negative MGI_C57BL6J_5589451 Gm30292 NCBI_Gene:102632139,ENSEMBL:ENSMUSG00000104109 MGI:5589451 lncRNA gene predicted gene, 30292
3 gene 52.90676 52.92767 negative MGI_C57BL6J_5434106 Gm20750 NCBI_Gene:622124,ENSEMBL:ENSMUSG00000104401 MGI:5434106 lncRNA gene predicted gene, 20750
3 gene 52.93325 52.95628 positive MGI_C57BL6J_5589510 Gm30351 NCBI_Gene:102632211 MGI:5589510 lncRNA gene predicted gene, 30351
3 gene 52.95618 52.95789 negative MGI_C57BL6J_5589561 Gm30402 NCBI_Gene:102632287 MGI:5589561 lncRNA gene predicted gene, 30402
3 pseudogene 52.96005 52.96037 negative MGI_C57BL6J_5610235 Gm37007 ENSEMBL:ENSMUSG00000103886 MGI:5610235 pseudogene predicted gene, 37007
3 gene 52.98188 53.01724 negative MGI_C57BL6J_1914792 Cog6 NCBI_Gene:67542,ENSEMBL:ENSMUSG00000027742 MGI:1914792 protein coding gene component of oligomeric golgi complex 6
3 gene 53.03858 53.04176 negative MGI_C57BL6J_5663038 Gm42901 ENSEMBL:ENSMUSG00000104850 MGI:5663038 lncRNA gene predicted gene 42901
3 gene 53.04153 53.26168 positive MGI_C57BL6J_1920048 Lhfp NCBI_Gene:108927,ENSEMBL:ENSMUSG00000048332 MGI:1920048 protein coding gene lipoma HMGIC fusion partner
3 gene 53.07216 53.07524 negative MGI_C57BL6J_5663035 Gm42898 ENSEMBL:ENSMUSG00000104828 MGI:5663035 unclassified gene predicted gene 42898
3 gene 53.08322 53.08588 positive MGI_C57BL6J_5663036 Gm42899 ENSEMBL:ENSMUSG00000104687 MGI:5663036 unclassified gene predicted gene 42899
3 gene 53.09900 53.10318 positive MGI_C57BL6J_2443940 C130075A20Rik ENSEMBL:ENSMUSG00000104735 MGI:2443940 unclassified gene RIKEN cDNA C130075A20 gene
3 gene 53.10967 53.11012 positive MGI_C57BL6J_5663941 Gm43804 ENSEMBL:ENSMUSG00000104615 MGI:5663941 unclassified gene predicted gene 43804
3 gene 53.11040 53.11341 negative MGI_C57BL6J_5663940 Gm43803 ENSEMBL:ENSMUSG00000104968 MGI:5663940 lncRNA gene predicted gene 43803
3 gene 53.11217 53.11299 positive MGI_C57BL6J_5663942 Gm43805 ENSEMBL:ENSMUSG00000105971 MGI:5663942 unclassified gene predicted gene 43805
3 pseudogene 53.34649 53.34723 negative MGI_C57BL6J_5663609 Gm43472 ENSEMBL:ENSMUSG00000106660 MGI:5663609 pseudogene predicted gene 43472
3 gene 53.39575 53.39850 positive MGI_C57BL6J_5622933 Gm40048 NCBI_Gene:105244441 MGI:5622933 lncRNA gene predicted gene, 40048
3 pseudogene 53.40161 53.42457 negative MGI_C57BL6J_5663608 Gm43471 NCBI_Gene:108168853,ENSEMBL:ENSMUSG00000105397 MGI:5663608 pseudogene predicted gene 43471
3 gene 53.44858 53.46333 negative MGI_C57BL6J_2444520 Nhlrc3 NCBI_Gene:212114,ENSEMBL:ENSMUSG00000042997 MGI:2444520 protein coding gene NHL repeat containing 3
3 gene 53.45262 53.45805 positive MGI_C57BL6J_3801870 Gm16206 NCBI_Gene:102632669,ENSEMBL:ENSMUSG00000085174 MGI:3801870 lncRNA gene predicted gene 16206
3 gene 53.46367 53.48175 positive MGI_C57BL6J_1919933 Proser1 NCBI_Gene:212127,ENSEMBL:ENSMUSG00000049504 MGI:1919933 protein coding gene proline and serine rich 1
3 gene 53.48865 53.50850 positive MGI_C57BL6J_2388072 Stoml3 NCBI_Gene:229277,ENSEMBL:ENSMUSG00000027744 MGI:2388072 protein coding gene stomatin (Epb7.2)-like 3
3 gene 53.50893 53.51010 positive MGI_C57BL6J_1924132 6430500D05Rik ENSEMBL:ENSMUSG00000105481 MGI:1924132 unclassified gene RIKEN cDNA 6430500D05 gene
3 gene 53.51200 53.51213 positive MGI_C57BL6J_5453452 Gm23675 ENSEMBL:ENSMUSG00000087936 MGI:5453452 snoRNA gene predicted gene, 23675
3 gene 53.51394 53.65736 negative MGI_C57BL6J_2444465 Frem2 NCBI_Gene:242022,ENSEMBL:ENSMUSG00000037016 MGI:2444465 protein coding gene Fras1 related extracellular matrix protein 2
3 pseudogene 53.66666 53.66739 negative MGI_C57BL6J_3648425 Gm6073 NCBI_Gene:606547,ENSEMBL:ENSMUSG00000105840 MGI:3648425 pseudogene predicted gene 6073
3 pseudogene 53.69237 53.69292 negative MGI_C57BL6J_3649038 Gm6204 NCBI_Gene:621155,ENSEMBL:ENSMUSG00000105879 MGI:3649038 pseudogene predicted gene 6204
3 gene 53.70304 53.73576 positive MGI_C57BL6J_5589894 Gm30735 NCBI_Gene:102632743,ENSEMBL:ENSMUSG00000105168 MGI:5589894 lncRNA gene predicted gene, 30735
3 gene 53.73622 53.73783 positive MGI_C57BL6J_3642187 Gm10727 ENSEMBL:ENSMUSG00000105444 MGI:3642187 unclassified gene predicted gene 10727
3 gene 53.75673 53.77295 positive MGI_C57BL6J_2443105 C820005J03Rik ENSEMBL:ENSMUSG00000106270 MGI:2443105 lncRNA gene RIKEN cDNA C820005J03 gene
3 gene 53.84341 53.84351 positive MGI_C57BL6J_5454628 Gm24851 ENSEMBL:ENSMUSG00000088653 MGI:5454628 snRNA gene predicted gene, 24851
3 gene 53.84509 53.84528 positive MGI_C57BL6J_3779200 Gm10985 ENSEMBL:ENSMUSG00000078742 MGI:3779200 protein coding gene predicted gene 10985
3 gene 53.85338 53.86383 negative MGI_C57BL6J_1915140 Ufm1 NCBI_Gene:67890,ENSEMBL:ENSMUSG00000027746 MGI:1915140 protein coding gene ubiquitin-fold modifier 1
3 gene 53.92484 53.94353 positive MGI_C57BL6J_5590185 Gm31026 NCBI_Gene:102633119,ENSEMBL:ENSMUSG00000106577 MGI:5590185 lncRNA gene predicted gene, 31026
3 pseudogene 54.02115 54.02195 positive MGI_C57BL6J_3645533 Gm8109 NCBI_Gene:666444,ENSEMBL:ENSMUSG00000103155 MGI:3645533 pseudogene predicted gene 8109
3 pseudogene 54.02988 54.03041 positive MGI_C57BL6J_5010203 Gm18018 NCBI_Gene:100416282,ENSEMBL:ENSMUSG00000105067 MGI:5010203 pseudogene predicted gene, 18018
3 gene 54.15604 54.31847 positive MGI_C57BL6J_109525 Trpc4 NCBI_Gene:22066,ENSEMBL:ENSMUSG00000027748 MGI:109525 protein coding gene transient receptor potential cation channel, subfamily C, member 4
3 gene 54.35927 54.39104 positive MGI_C57BL6J_1926321 Postn NCBI_Gene:50706,ENSEMBL:ENSMUSG00000027750 MGI:1926321 protein coding gene periostin, osteoblast specific factor
3 gene 54.35966 54.36101 negative MGI_C57BL6J_5590254 Gm31095 NCBI_Gene:102633208 MGI:5590254 lncRNA gene predicted gene, 31095
3 pseudogene 54.48141 54.48293 positive MGI_C57BL6J_3645731 Gm5641 NCBI_Gene:434807,ENSEMBL:ENSMUSG00000069014 MGI:3645731 pseudogene predicted gene 5641
3 gene 54.48856 54.53489 negative MGI_C57BL6J_5590313 Gm31154 NCBI_Gene:102633293 MGI:5590313 lncRNA gene predicted gene, 31154
3 gene 54.59055 54.60139 negative MGI_C57BL6J_5622935 Gm40050 NCBI_Gene:105244443 MGI:5622935 lncRNA gene predicted gene, 40050
3 gene 54.63144 54.63463 positive MGI_C57BL6J_5477172 Gm26678 ENSEMBL:ENSMUSG00000097599 MGI:5477172 lncRNA gene predicted gene, 26678
3 pseudogene 54.63288 54.63457 negative MGI_C57BL6J_3588285 B020017C02Rik NCBI_Gene:100503708,ENSEMBL:ENSMUSG00000104831 MGI:3588285 pseudogene RIKEN cDNA B020017C02 gene
3 gene 54.69276 54.72877 positive MGI_C57BL6J_1929651 Supt20 NCBI_Gene:56790,ENSEMBL:ENSMUSG00000027751 MGI:1929651 protein coding gene SPT20 SAGA complex component
3 gene 54.71318 54.71435 negative MGI_C57BL6J_5439427 Gm21958 ENSEMBL:ENSMUSG00000094487 MGI:5439427 protein coding gene predicted gene, 21958
3 gene 54.72868 54.73539 negative MGI_C57BL6J_1916889 Exosc8 NCBI_Gene:69639,ENSEMBL:ENSMUSG00000027752 MGI:1916889 protein coding gene exosome component 8
3 gene 54.73554 54.75132 positive MGI_C57BL6J_1913498 Alg5 NCBI_Gene:66248,ENSEMBL:ENSMUSG00000036632 MGI:1913498 protein coding gene asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)
3 gene 54.75545 54.80166 positive MGI_C57BL6J_1859993 Smad9 NCBI_Gene:55994,ENSEMBL:ENSMUSG00000027796 MGI:1859993 protein coding gene SMAD family member 9
3 gene 54.80311 54.80779 negative MGI_C57BL6J_2180854 Rfxap NCBI_Gene:170767,ENSEMBL:ENSMUSG00000036615 MGI:2180854 protein coding gene regulatory factor X-associated protein
3 pseudogene 54.80997 54.81140 negative MGI_C57BL6J_3708673 Gm10254 NCBI_Gene:545524,ENSEMBL:ENSMUSG00000069011 MGI:3708673 pseudogene predicted gene 10254
3 gene 54.89707 54.91589 negative MGI_C57BL6J_3607715 Sertm1 NCBI_Gene:329641,ENSEMBL:ENSMUSG00000056306 MGI:3607715 protein coding gene serine rich and transmembrane domain containing 1
3 gene 54.91602 54.95326 positive MGI_C57BL6J_5590517 Gm31358 NCBI_Gene:102633562 MGI:5590517 lncRNA gene predicted gene, 31358
3 gene 55.04547 55.05550 negative MGI_C57BL6J_108042 Ccna1 NCBI_Gene:12427,ENSEMBL:ENSMUSG00000027793 MGI:108042 protein coding gene cyclin A1
3 gene 55.05524 55.08400 positive MGI_C57BL6J_1918220 4931419H13Rik NCBI_Gene:70970,ENSEMBL:ENSMUSG00000106589 MGI:1918220 lncRNA gene RIKEN cDNA 4931419H13 gene
3 pseudogene 55.05735 55.05766 negative MGI_C57BL6J_5663692 Gm43555 ENSEMBL:ENSMUSG00000105977 MGI:5663692 pseudogene predicted gene 43555
3 gene 55.11207 55.13733 positive MGI_C57BL6J_2139806 Spg20 NCBI_Gene:229285,ENSEMBL:ENSMUSG00000036580 MGI:2139806 protein coding gene spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
3 gene 55.13734 55.17525 positive MGI_C57BL6J_2444356 Ccdc169 NCBI_Gene:320604,ENSEMBL:ENSMUSG00000048655 MGI:2444356 protein coding gene coiled-coil domain containing 169
3 gene 55.16231 55.16243 negative MGI_C57BL6J_5451806 Gm22029 ENSEMBL:ENSMUSG00000080590 MGI:5451806 miRNA gene predicted gene, 22029
3 gene 55.18203 55.20996 positive MGI_C57BL6J_1921684 Sohlh2 NCBI_Gene:74434,ENSEMBL:ENSMUSG00000027794 MGI:1921684 protein coding gene spermatogenesis and oogenesis specific basic helix-loop-helix 2
3 gene 55.24236 55.53907 positive MGI_C57BL6J_1330861 Dclk1 NCBI_Gene:13175,ENSEMBL:ENSMUSG00000027797 MGI:1330861 protein coding gene doublecortin-like kinase 1
3 gene 55.29094 55.29194 positive MGI_C57BL6J_1924494 9430012M22Rik NA NA unclassified gene RIKEN cDNA 9430012M22 gene
3 gene 55.30532 55.30542 positive MGI_C57BL6J_5454909 Gm25132 ENSEMBL:ENSMUSG00000064586 MGI:5454909 snRNA gene predicted gene, 25132
3 gene 55.33084 55.33297 positive MGI_C57BL6J_5012002 Gm19817 ENSEMBL:ENSMUSG00000105302 MGI:5012002 unclassified gene predicted gene, 19817
3 gene 55.35240 55.38079 negative MGI_C57BL6J_5622936 Gm40051 NCBI_Gene:105244444 MGI:5622936 lncRNA gene predicted gene, 40051
3 gene 55.37746 55.40312 negative MGI_C57BL6J_5662746 Gm42609 ENSEMBL:ENSMUSG00000105975 MGI:5662746 lncRNA gene predicted gene 42609
3 gene 55.39181 55.40420 negative MGI_C57BL6J_3642047 Gm9831 NCBI_Gene:101056032 MGI:3642047 protein coding gene predicted gene 9831
3 gene 55.46198 55.47221 negative MGI_C57BL6J_5439423 Gm21954 ENSEMBL:ENSMUSG00000094962 MGI:5439423 protein coding gene predicted gene, 21954
3 gene 55.47609 55.48162 negative MGI_C57BL6J_5590602 Gm31443 NCBI_Gene:102633676 MGI:5590602 lncRNA gene predicted gene, 31443
3 gene 55.48379 55.48718 positive MGI_C57BL6J_5662744 Gm42607 ENSEMBL:ENSMUSG00000106354 MGI:5662744 unclassified gene predicted gene 42607
3 gene 55.51757 55.51959 positive MGI_C57BL6J_5662745 Gm42608 ENSEMBL:ENSMUSG00000106651 MGI:5662745 unclassified gene predicted gene 42608
3 gene 55.54045 55.54338 negative MGI_C57BL6J_5590955 Gm31796 NCBI_Gene:102634140 MGI:5590955 lncRNA gene predicted gene, 31796
3 gene 55.54354 55.54855 positive MGI_C57BL6J_5455181 Gm25404 NCBI_Gene:102634218,ENSEMBL:ENSMUSG00000064904 MGI:5455181 snRNA gene predicted gene, 25404
3 gene 55.57492 55.57727 positive MGI_C57BL6J_5663685 Gm43548 ENSEMBL:ENSMUSG00000105627 MGI:5663685 unclassified gene predicted gene 43548
3 gene 55.57811 55.58273 negative MGI_C57BL6J_5663686 Gm43549 NCBI_Gene:108168870,ENSEMBL:ENSMUSG00000106334 MGI:5663686 lncRNA gene predicted gene 43549
3 gene 55.62519 56.18427 negative MGI_C57BL6J_1347075 Nbea NCBI_Gene:26422,ENSEMBL:ENSMUSG00000027799 MGI:1347075 protein coding gene neurobeachin
3 gene 55.70589 55.71565 positive MGI_C57BL6J_5826441 Gm46804 NCBI_Gene:108168871 MGI:5826441 lncRNA gene predicted gene, 46804
3 gene 55.72593 55.72844 negative MGI_C57BL6J_3609650 D430004P15Rik NA NA unclassified gene Riken cDNA D430004P15 gene
3 gene 55.77534 55.78795 negative MGI_C57BL6J_3698047 9630024C22Rik NA NA unclassified non-coding RNA gene RIKEN cDNA 9630024C22 gene
3 gene 55.78251 55.78529 positive MGI_C57BL6J_1333773 Mab21l1 NCBI_Gene:17116,ENSEMBL:ENSMUSG00000056947 MGI:1333773 protein coding gene mab-21-like 1
3 gene 55.83367 55.83446 negative MGI_C57BL6J_1924979 6720451E02Rik NA NA unclassified gene RIKEN cDNA 6720451E02 gene
3 pseudogene 55.84710 55.84840 positive MGI_C57BL6J_1918432 4933417G07Rik NCBI_Gene:71182,ENSEMBL:ENSMUSG00000106572 MGI:1918432 pseudogene RIKEN cDNA 4933417G07 gene
3 gene 55.85525 55.85615 negative MGI_C57BL6J_1926125 B230206L23Rik NA NA unclassified gene RIKEN cDNA B230206L23 gene
3 gene 55.88327 56.00032 positive MGI_C57BL6J_5591073 Gm31914 NCBI_Gene:102634293 MGI:5591073 lncRNA gene predicted gene, 31914
3 gene 55.89031 55.93670 positive MGI_C57BL6J_5663513 Gm43376 ENSEMBL:ENSMUSG00000104677 MGI:5663513 lncRNA gene predicted gene 43376
3 gene 55.95678 55.95691 negative MGI_C57BL6J_5452561 Gm22784 ENSEMBL:ENSMUSG00000077276 MGI:5452561 snoRNA gene predicted gene, 22784
3 gene 56.01492 56.01717 negative MGI_C57BL6J_5662977 Gm42840 ENSEMBL:ENSMUSG00000104938 MGI:5662977 unclassified gene predicted gene 42840
3 gene 56.12316 56.12616 negative MGI_C57BL6J_5662979 Gm42842 ENSEMBL:ENSMUSG00000106211 MGI:5662979 unclassified gene predicted gene 42842
3 gene 56.12860 56.13053 negative MGI_C57BL6J_5662978 Gm42841 ENSEMBL:ENSMUSG00000106528 MGI:5662978 unclassified gene predicted gene 42841
3 gene 56.16395 56.16757 negative MGI_C57BL6J_5662980 Gm42843 ENSEMBL:ENSMUSG00000105293 MGI:5662980 unclassified gene predicted gene 42843
3 gene 56.21791 56.22124 negative MGI_C57BL6J_5622937 Gm40052 NCBI_Gene:105244445 MGI:5622937 lncRNA gene predicted gene, 40052
3 gene 56.25590 56.26994 negative MGI_C57BL6J_5622938 Gm40053 NCBI_Gene:105244446 MGI:5622938 lncRNA gene predicted gene, 40053
3 gene 56.34703 56.35755 negative MGI_C57BL6J_5622939 Gm40054 NCBI_Gene:105244447 MGI:5622939 lncRNA gene predicted gene, 40054
3 gene 56.35224 56.35230 positive MGI_C57BL6J_102792 Mcptl NA NA protein coding gene mast cell protease-like
3 gene 56.43600 56.43875 negative MGI_C57BL6J_5591336 Gm32177 NCBI_Gene:102634641 MGI:5591336 lncRNA gene predicted gene, 32177
3 gene 56.44528 56.44541 negative MGI_C57BL6J_5455504 Gm25727 ENSEMBL:ENSMUSG00000077710 MGI:5455504 snoRNA gene predicted gene, 25727
3 gene 56.69842 56.70506 positive MGI_C57BL6J_5591396 Gm32237 NCBI_Gene:102634719 MGI:5591396 lncRNA gene predicted gene, 32237
3 pseudogene 56.82832 56.82884 negative MGI_C57BL6J_3780790 Gm2622 NCBI_Gene:100040139,ENSEMBL:ENSMUSG00000105113 MGI:3780790 pseudogene predicted gene 2622
3 gene 56.88806 56.89133 negative MGI_C57BL6J_3588185 F830104G03Rik NA NA unclassified gene RIKEN cDNA F830104G03 gene
3 gene 57.05415 57.05428 positive MGI_C57BL6J_5452046 Gm22269 ENSEMBL:ENSMUSG00000077190 MGI:5452046 snoRNA gene predicted gene, 22269
3 pseudogene 57.13549 57.13683 negative MGI_C57BL6J_3805962 Gm8177 NCBI_Gene:666585,ENSEMBL:ENSMUSG00000097366 MGI:3805962 pseudogene predicted gene 8177
3 gene 57.22772 57.22918 negative MGI_C57BL6J_1918389 4933408K01Rik NA NA unclassified gene RIKEN cDNA 4933408K01 gene
3 pseudogene 57.24925 57.24950 positive MGI_C57BL6J_5663561 Gm43424 ENSEMBL:ENSMUSG00000106286 MGI:5663561 pseudogene predicted gene 43424
3 pseudogene 57.27174 57.27237 negative MGI_C57BL6J_5010845 Gm18660 NCBI_Gene:100417512,ENSEMBL:ENSMUSG00000104534 MGI:5010845 pseudogene predicted gene, 18660
3 gene 57.28561 57.30199 negative MGI_C57BL6J_104678 Tm4sf1 NCBI_Gene:17112,ENSEMBL:ENSMUSG00000027800 MGI:104678 protein coding gene transmembrane 4 superfamily member 1
3 pseudogene 57.36225 57.36361 positive MGI_C57BL6J_3646382 Gm5276 NCBI_Gene:383862,ENSEMBL:ENSMUSG00000105452 MGI:3646382 pseudogene predicted gene 5276
3 gene 57.37929 57.39455 negative MGI_C57BL6J_5591526 Gm32367 NCBI_Gene:102634892 MGI:5591526 lncRNA gene predicted gene, 32367
3 gene 57.42531 57.44168 positive MGI_C57BL6J_2385173 Tm4sf4 NCBI_Gene:229302,ENSEMBL:ENSMUSG00000027801 MGI:2385173 protein coding gene transmembrane 4 superfamily member 4
3 gene 57.45564 57.57591 negative MGI_C57BL6J_1917649 Wwtr1 NCBI_Gene:97064,ENSEMBL:ENSMUSG00000027803 MGI:1917649 protein coding gene WW domain containing transcription regulator 1
3 pseudogene 57.52655 57.53048 positive MGI_C57BL6J_3802068 Gm16016 NCBI_Gene:105244448,ENSEMBL:ENSMUSG00000083538 MGI:3802068 pseudogene predicted gene 16016
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 57.95198 58.03171 negative MGI_C57BL6J_5622940 Gm40055 NCBI_Gene:105244449,ENSEMBL:ENSMUSG00000105003 MGI:5622940 lncRNA gene predicted gene, 40055
3 gene 58.07972 58.08183 positive MGI_C57BL6J_5662650 Gm42513 ENSEMBL:ENSMUSG00000105065 MGI:5662650 unclassified gene predicted gene 42513
3 gene 58.08960 58.16235 positive MGI_C57BL6J_5622941 Gm40056 NCBI_Gene:105244450 MGI:5622941 lncRNA gene predicted gene, 40056
3 pseudogene 58.10256 58.10430 negative MGI_C57BL6J_3643179 Gm5537 NCBI_Gene:433594,ENSEMBL:ENSMUSG00000069008 MGI:3643179 pseudogene predicted gene 5537
3 gene 58.11705 58.16762 positive MGI_C57BL6J_1925506 4921539H07Rik ENSEMBL:ENSMUSG00000104586 MGI:1925506 lncRNA gene RIKEN cDNA 4921539H07 gene
3 gene 58.14171 58.16381 negative MGI_C57BL6J_1915100 1700007F19Rik NCBI_Gene:67850,ENSEMBL:ENSMUSG00000100666 MGI:1915100 lncRNA gene RIKEN cDNA 1700007F19 gene
3 gene 58.21192 58.21337 positive MGI_C57BL6J_5622942 Gm40057 NCBI_Gene:105244451 MGI:5622942 lncRNA gene predicted gene, 40057
3 gene 58.29025 58.29036 negative MGI_C57BL6J_5455943 Gm26166 ENSEMBL:ENSMUSG00000065722 MGI:5455943 snRNA gene predicted gene, 26166
3 gene 58.30186 58.31762 positive MGI_C57BL6J_5592006 Gm32847 NCBI_Gene:102635539 MGI:5592006 lncRNA gene predicted gene, 32847
3 pseudogene 58.31494 58.31531 negative MGI_C57BL6J_5663867 Gm43730 ENSEMBL:ENSMUSG00000106176 MGI:5663867 pseudogene predicted gene 43730
3 pseudogene 58.40465 58.40512 positive MGI_C57BL6J_5012313 Gm20128 NCBI_Gene:100504238,ENSEMBL:ENSMUSG00000105154 MGI:5012313 pseudogene predicted gene, 20128
3 gene 58.41472 58.46679 positive MGI_C57BL6J_1919283 Tsc22d2 NCBI_Gene:72033,ENSEMBL:ENSMUSG00000027806 MGI:1919283 protein coding gene TSC22 domain family, member 2
3 gene 58.43268 58.43301 positive MGI_C57BL6J_1338064 Gdap9 NA NA unclassified gene ganglioside-induced differentiation-associated-protein 9
3 gene 58.51982 58.52589 negative MGI_C57BL6J_92638 Serp1 NCBI_Gene:28146,ENSEMBL:ENSMUSG00000027808 MGI:92638 protein coding gene stress-associated endoplasmic reticulum protein 1
3 gene 58.52582 58.55750 positive MGI_C57BL6J_1098684 Eif2a NCBI_Gene:229317,ENSEMBL:ENSMUSG00000027810 MGI:1098684 protein coding gene eukaryotic translation initiation factor 2A
3 gene 58.52693 58.52812 positive MGI_C57BL6J_1925148 6720482G16Rik ENSEMBL:ENSMUSG00000106553 MGI:1925148 unclassified gene RIKEN cDNA 6720482G16 gene
3 gene 58.57664 58.59354 positive MGI_C57BL6J_1916477 Selenot NCBI_Gene:69227,ENSEMBL:ENSMUSG00000075700 MGI:1916477 protein coding gene selenoprotein T
3 gene 58.61630 58.63721 negative MGI_C57BL6J_3588212 Erich6 NCBI_Gene:545527,ENSEMBL:ENSMUSG00000070471 MGI:3588212 protein coding gene glutamate rich 6
3 gene 58.63671 58.63749 positive MGI_C57BL6J_5826443 Gm46806 NCBI_Gene:108168873 MGI:5826443 lncRNA gene predicted gene, 46806
3 pseudogene 58.65204 58.65404 positive MGI_C57BL6J_3779790 Gm8234 NCBI_Gene:666680,ENSEMBL:ENSMUSG00000105021 MGI:3779790 pseudogene predicted gene 8234
3 pseudogene 58.66547 58.66664 negative MGI_C57BL6J_2139888 AU022133 NCBI_Gene:100417266,ENSEMBL:ENSMUSG00000105336 MGI:2139888 pseudogene expressed sequence AU022133
3 gene 58.67494 58.69244 negative MGI_C57BL6J_108062 Siah2 NCBI_Gene:20439,ENSEMBL:ENSMUSG00000036432 MGI:108062 protein coding gene siah E3 ubiquitin protein ligase 2
3 gene 58.69259 58.79733 positive MGI_C57BL6J_1923132 4930593A02Rik NCBI_Gene:71301,ENSEMBL:ENSMUSG00000097725 MGI:1923132 lncRNA gene RIKEN cDNA 4930593A02 gene
3 gene 58.69756 58.69867 positive MGI_C57BL6J_1925070 A930028O11Rik ENSEMBL:ENSMUSG00000105226 MGI:1925070 unclassified gene RIKEN cDNA A930028O11 gene
3 pseudogene 58.76149 58.76275 negative MGI_C57BL6J_5592251 Gm33092 NCBI_Gene:102635856 MGI:5592251 pseudogene predicted gene, 33092
3 pseudogene 58.78841 58.82231 negative MGI_C57BL6J_2140018 Mindy4b-ps NCBI_Gene:100040293,ENSEMBL:ENSMUSG00000101860 MGI:2140018 pseudogene MINDY lysine 48 deubiquitinase 4B, pseudogene
3 gene 58.82499 58.83590 positive MGI_C57BL6J_5622944 Gm40059 NCBI_Gene:105244453 MGI:5622944 lncRNA gene predicted gene, 40059
3 gene 58.84210 58.86675 positive MGI_C57BL6J_5622945 Gm40060 NCBI_Gene:105244454 MGI:5622945 lncRNA gene predicted gene, 40060
3 gene 58.84403 58.88534 negative MGI_C57BL6J_2388124 Clrn1 NCBI_Gene:229320,ENSEMBL:ENSMUSG00000043850 MGI:2388124 protein coding gene clarin 1
3 gene 58.97563 58.97573 positive MGI_C57BL6J_5452268 Gm22491 ENSEMBL:ENSMUSG00000087815 MGI:5452268 snRNA gene predicted gene, 22491
3 gene 58.97886 58.97903 negative MGI_C57BL6J_5455349 Gm25572 ENSEMBL:ENSMUSG00000088152 MGI:5455349 snRNA gene predicted gene, 25572
3 pseudogene 58.98713 58.98786 positive MGI_C57BL6J_3642685 Rpl13-ps6 NCBI_Gene:100040416,ENSEMBL:ENSMUSG00000059776 MGI:3642685 pseudogene ribosomal protein L13, pseudogene 6
3 gene 59.00162 59.00169 positive MGI_C57BL6J_5531175 Gm27793 ENSEMBL:ENSMUSG00000099052 MGI:5531175 unclassified non-coding RNA gene predicted gene, 27793
3 gene 59.00247 59.00616 negative MGI_C57BL6J_5663707 Gm43570 ENSEMBL:ENSMUSG00000105945 MGI:5663707 lncRNA gene predicted gene 43570
3 gene 59.00559 59.31868 positive MGI_C57BL6J_2139916 Med12l NCBI_Gene:329650,ENSEMBL:ENSMUSG00000056476 MGI:2139916 protein coding gene mediator complex subunit 12-like
3 gene 59.09645 59.10182 negative MGI_C57BL6J_2442043 Gpr171 NCBI_Gene:229323,ENSEMBL:ENSMUSG00000050075 MGI:2442043 protein coding gene G protein-coupled receptor 171
3 gene 59.11386 59.15362 negative MGI_C57BL6J_2155705 P2ry14 NCBI_Gene:140795,ENSEMBL:ENSMUSG00000036381 MGI:2155705 protein coding gene purinergic receptor P2Y, G-protein coupled, 14
3 gene 59.14630 59.15363 negative MGI_C57BL6J_2444074 F630111L10Rik NCBI_Gene:320463 MGI:2444074 lncRNA gene RIKEN cDNA F630111L10 gene
3 gene 59.17890 59.19547 negative MGI_C57BL6J_1934133 Gpr87 NCBI_Gene:84111,ENSEMBL:ENSMUSG00000051431 MGI:1934133 protein coding gene G protein-coupled receptor 87
3 gene 59.20789 59.21088 negative MGI_C57BL6J_1921441 P2ry13 NCBI_Gene:74191,ENSEMBL:ENSMUSG00000036362 MGI:1921441 protein coding gene purinergic receptor P2Y, G-protein coupled 13
3 gene 59.21627 59.26301 negative MGI_C57BL6J_1918089 P2ry12 NCBI_Gene:70839,ENSEMBL:ENSMUSG00000036353 MGI:1918089 protein coding gene purinergic receptor P2Y, G-protein coupled 12
3 gene 59.26979 59.27131 positive MGI_C57BL6J_5663726 Gm43589 ENSEMBL:ENSMUSG00000104550 MGI:5663726 unclassified gene predicted gene 43589
3 gene 59.31674 59.34444 negative MGI_C57BL6J_1923481 Igsf10 NCBI_Gene:242050,ENSEMBL:ENSMUSG00000036334 MGI:1923481 protein coding gene immunoglobulin superfamily, member 10
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 59.31674 59.34444 negative MGI_C57BL6J_1923481 Igsf10 NCBI_Gene:242050,ENSEMBL:ENSMUSG00000036334 MGI:1923481 protein coding gene immunoglobulin superfamily, member 10
3 gene 59.34427 59.35117 positive MGI_C57BL6J_5611414 Gm38186 ENSEMBL:ENSMUSG00000103668 MGI:5611414 lncRNA gene predicted gene, 38186
3 pseudogene 59.42453 59.42476 positive MGI_C57BL6J_5610943 Gm37715 ENSEMBL:ENSMUSG00000102247 MGI:5610943 pseudogene predicted gene, 37715
3 pseudogene 59.43154 59.43335 positive MGI_C57BL6J_3648019 Gm8276 NCBI_Gene:666756,ENSEMBL:ENSMUSG00000102550 MGI:3648019 pseudogene predicted gene 8276
3 pseudogene 59.46967 59.47409 negative MGI_C57BL6J_5611516 Gm38288 ENSEMBL:ENSMUSG00000103211 MGI:5611516 pseudogene predicted gene, 38288
3 gene 59.47493 59.47500 negative MGI_C57BL6J_4414092 n-TVcac1 NCBI_Gene:102467620 MGI:4414092 tRNA gene nuclear encoded tRNA valine 1 (anticodon CAC)
3 pseudogene 59.48302 59.48329 positive MGI_C57BL6J_5610999 Gm37771 ENSEMBL:ENSMUSG00000104038 MGI:5610999 pseudogene predicted gene, 37771
3 pseudogene 59.50558 59.53523 negative MGI_C57BL6J_3644725 Gm4856 NCBI_Gene:229330,ENSEMBL:ENSMUSG00000103598 MGI:3644725 pseudogene predicted gene 4856
3 pseudogene 59.60245 59.63576 negative MGI_C57BL6J_3644280 Gm5709 NCBI_Gene:435732,ENSEMBL:ENSMUSG00000095128 MGI:3644280 pseudogene predicted gene 5709
3 gene 59.66286 59.66528 positive MGI_C57BL6J_5611154 Gm37926 ENSEMBL:ENSMUSG00000102480 MGI:5611154 unclassified gene predicted gene, 37926
3 gene 59.72979 59.75240 positive MGI_C57BL6J_3779495 Aadacl2fm2 NCBI_Gene:433597,ENSEMBL:ENSMUSG00000090527 MGI:3779495 protein coding gene AADACL2 family member 2
3 pseudogene 59.73675 59.73686 negative MGI_C57BL6J_5611436 Gm38208 ENSEMBL:ENSMUSG00000104471 MGI:5611436 pseudogene predicted gene, 38208
3 pseudogene 59.73718 59.73732 negative MGI_C57BL6J_5610807 Gm37579 ENSEMBL:ENSMUSG00000102390 MGI:5610807 pseudogene predicted gene, 37579
3 pseudogene 59.76721 59.76891 positive MGI_C57BL6J_3644451 Gm5539 NCBI_Gene:433598,ENSEMBL:ENSMUSG00000103986 MGI:3644451 pseudogene predicted gene 5539
3 gene 59.77781 59.84682 positive MGI_C57BL6J_1921922 4930449A18Rik ENSEMBL:ENSMUSG00000074589 MGI:1921922 protein coding gene RIKEN cDNA 4930449A18 gene
3 pseudogene 59.78322 59.78863 negative MGI_C57BL6J_3780925 Gm2756 NCBI_Gene:100040407,ENSEMBL:ENSMUSG00000102757 MGI:3780925 pseudogene predicted gene 2756
3 gene 59.83837 59.84682 positive MGI_C57BL6J_4361133 Gm16527 NCBI_Gene:669780 MGI:4361133 protein coding gene predicted gene, 16527
3 gene 59.86105 59.87731 positive MGI_C57BL6J_3643798 Aadacl2fm3 NCBI_Gene:666803,ENSEMBL:ENSMUSG00000095522 MGI:3643798 protein coding gene AADACL2 family member 3
3 gene 59.92521 59.93795 positive MGI_C57BL6J_3028051 Aadacl2fm1 NCBI_Gene:229333,ENSEMBL:ENSMUSG00000036951 MGI:3028051 protein coding gene AADACL2 family member 1
3 pseudogene 59.95231 59.97359 positive MGI_C57BL6J_3819177 Gm9696 NCBI_Gene:676914,ENSEMBL:ENSMUSG00000070465 MGI:3819177 pseudogene predicted gene 9696
3 gene 60.00674 60.02542 positive MGI_C57BL6J_3646333 Aadacl2 NCBI_Gene:639634,ENSEMBL:ENSMUSG00000091376 MGI:3646333 protein coding gene arylacetamide deacetylase like 2
3 pseudogene 60.02036 60.02087 negative MGI_C57BL6J_5010612 Gm18427 NCBI_Gene:100417154,ENSEMBL:ENSMUSG00000103177 MGI:5010612 pseudogene predicted gene, 18427
3 gene 60.02572 60.04016 positive MGI_C57BL6J_1915008 Aadac NCBI_Gene:67758,ENSEMBL:ENSMUSG00000027761 MGI:1915008 protein coding gene arylacetamide deacetylase
3 gene 60.08187 60.08757 positive MGI_C57BL6J_1934135 Sucnr1 NCBI_Gene:84112,ENSEMBL:ENSMUSG00000027762 MGI:1934135 protein coding gene succinate receptor 1
3 gene 60.12764 60.12775 negative MGI_C57BL6J_5454159 Gm24382 ENSEMBL:ENSMUSG00000084647 MGI:5454159 snRNA gene predicted gene, 24382
3 gene 60.29342 60.30941 negative MGI_C57BL6J_5592809 Gm33650 NCBI_Gene:102636642 MGI:5592809 lncRNA gene predicted gene, 33650
3 pseudogene 60.34219 60.34309 negative MGI_C57BL6J_3779880 Tgif1-ps NCBI_Gene:669823,ENSEMBL:ENSMUSG00000107270 MGI:3779880 pseudogene TGFB-induced factor homeobox 1, pseudogene
3 gene 60.47279 60.62975 positive MGI_C57BL6J_1928482 Mbnl1 NCBI_Gene:56758,ENSEMBL:ENSMUSG00000027763 MGI:1928482 protein coding gene muscleblind like splicing factor 1
3 gene 60.53575 60.53974 positive MGI_C57BL6J_5610817 Gm37589 ENSEMBL:ENSMUSG00000104235 MGI:5610817 unclassified gene predicted gene, 37589
3 gene 60.57770 60.58136 positive MGI_C57BL6J_5012001 Gm19816 NA NA unclassified gene predicted gene%2c 19816
3 gene 60.60438 60.60776 positive MGI_C57BL6J_5610716 Gm37488 ENSEMBL:ENSMUSG00000104125 MGI:5610716 unclassified gene predicted gene, 37488
3 pseudogene 60.73763 60.73779 negative MGI_C57BL6J_5611508 Gm38280 ENSEMBL:ENSMUSG00000104337 MGI:5611508 pseudogene predicted gene, 38280
3 pseudogene 60.76958 60.77164 negative MGI_C57BL6J_5592866 Gm33707 NCBI_Gene:102636711,ENSEMBL:ENSMUSG00000102298 MGI:5592866 pseudogene predicted gene, 33707
3 gene 60.78148 61.00379 negative MGI_C57BL6J_5610263 Gm37035 NCBI_Gene:105244455,ENSEMBL:ENSMUSG00000102564 MGI:5610263 lncRNA gene predicted gene, 37035
3 gene 60.78836 60.79473 positive MGI_C57BL6J_5611554 Gm38326 NCBI_Gene:102642162,ENSEMBL:ENSMUSG00000103587 MGI:5611554 lncRNA gene predicted gene, 38326
3 pseudogene 60.86071 60.86109 positive MGI_C57BL6J_5610213 Gm36985 ENSEMBL:ENSMUSG00000102490 MGI:5610213 pseudogene predicted gene, 36985
3 pseudogene 60.87700 60.87884 positive MGI_C57BL6J_3644852 Gm8325 NCBI_Gene:666853,ENSEMBL:ENSMUSG00000027694 MGI:3644852 pseudogene predicted pseudogene 8325
3 gene 61.00279 61.00898 positive MGI_C57BL6J_105049 P2ry1 NCBI_Gene:18441,ENSEMBL:ENSMUSG00000027765 MGI:105049 protein coding gene purinergic receptor P2Y, G-protein coupled 1
3 pseudogene 61.29116 61.29145 negative MGI_C57BL6J_5610947 Gm37719 ENSEMBL:ENSMUSG00000102242 MGI:5610947 pseudogene predicted gene, 37719
3 pseudogene 61.32849 61.32923 negative MGI_C57BL6J_5012086 Gm19901 NCBI_Gene:100503798,ENSEMBL:ENSMUSG00000102667 MGI:5012086 pseudogene predicted gene, 19901
3 gene 61.35855 61.36190 negative MGI_C57BL6J_5610924 Gm37696 ENSEMBL:ENSMUSG00000103473 MGI:5610924 lncRNA gene predicted gene, 37696
3 gene 61.36164 61.36870 positive MGI_C57BL6J_1921262 Rap2b NCBI_Gene:74012,ENSEMBL:ENSMUSG00000036894 MGI:1921262 protein coding gene RAP2B, member of RAS oncogene family
3 gene 61.36225 61.36595 negative MGI_C57BL6J_3697707 B430305J03Rik ENSEMBL:ENSMUSG00000053706 MGI:3697707 protein coding gene RIKEN cDNA B430305J03 gene
3 gene 61.39215 61.41303 positive MGI_C57BL6J_5622946 Gm40061 NCBI_Gene:105244456 MGI:5622946 lncRNA gene predicted gene, 40061
3 pseudogene 61.46166 61.46288 negative MGI_C57BL6J_3643135 Gm8349 NCBI_Gene:666891,ENSEMBL:ENSMUSG00000098208 MGI:3643135 pseudogene predicted gene 8349
3 pseudogene 62.06754 62.06979 negative MGI_C57BL6J_3780107 Gm9700 NCBI_Gene:676965,ENSEMBL:ENSMUSG00000104489 MGI:3780107 pseudogene predicted gene 9700
3 gene 62.12321 62.12356 positive MGI_C57BL6J_5610632 Gm37404 ENSEMBL:ENSMUSG00000103322 MGI:5610632 unclassified gene predicted gene, 37404
3 gene 62.33752 62.34053 negative MGI_C57BL6J_3704218 9330121J05Rik ENSEMBL:ENSMUSG00000103502 MGI:3704218 lncRNA gene RIKEN cDNA 9330121J05 gene
3 gene 62.33834 62.46222 positive MGI_C57BL6J_1918053 Arhgef26 NCBI_Gene:622434,ENSEMBL:ENSMUSG00000036885 MGI:1918053 protein coding gene Rho guanine nucleotide exchange factor (GEF) 26
3 gene 62.34139 62.35052 negative MGI_C57BL6J_5593082 Gm33923 NCBI_Gene:102637008 MGI:5593082 lncRNA gene predicted gene, 33923
3 gene 62.46801 62.50703 negative MGI_C57BL6J_1919412 Dhx36 NCBI_Gene:72162,ENSEMBL:ENSMUSG00000027770 MGI:1919412 protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 36
3 gene 62.52908 62.60544 negative MGI_C57BL6J_2443628 Gpr149 NCBI_Gene:229357,ENSEMBL:ENSMUSG00000043441 MGI:2443628 protein coding gene G protein-coupled receptor 149
3 gene 62.60493 62.76393 positive MGI_C57BL6J_5593207 Gm34048 NCBI_Gene:102637165 MGI:5593207 lncRNA gene predicted gene, 34048
3 pseudogene 62.76144 62.76202 positive MGI_C57BL6J_5010567 Gm18382 NCBI_Gene:100417044,ENSEMBL:ENSMUSG00000103764 MGI:5010567 pseudogene predicted gene, 18382
3 gene 62.77198 62.86064 positive MGI_C57BL6J_5622947 Gm40062 NCBI_Gene:105244457 MGI:5622947 lncRNA gene predicted gene, 40062
3 gene 62.86768 62.88900 positive MGI_C57BL6J_5622948 Gm40063 NCBI_Gene:105244458 MGI:5622948 lncRNA gene predicted gene, 40063
3 pseudogene 62.92376 62.92426 negative MGI_C57BL6J_3780108 Gm9701 NCBI_Gene:676984,ENSEMBL:ENSMUSG00000063001 MGI:3780108 pseudogene predicted gene 9701
3 gene 63.15222 63.15236 positive MGI_C57BL6J_5452210 Gm22433 ENSEMBL:ENSMUSG00000089175 MGI:5452210 snoRNA gene predicted gene, 22433
3 pseudogene 63.17311 63.17386 negative MGI_C57BL6J_3645001 Gm8388 NCBI_Gene:666967,ENSEMBL:ENSMUSG00000102270 MGI:3645001 pseudogene predicted gene 8388
3 gene 63.23282 63.24545 negative MGI_C57BL6J_5622949 Gm40064 NCBI_Gene:105244459 MGI:5622949 lncRNA gene predicted gene, 40064
3 gene 63.24154 63.38603 positive MGI_C57BL6J_97004 Mme NCBI_Gene:17380,ENSEMBL:ENSMUSG00000027820 MGI:97004 protein coding gene membrane metallo endopeptidase
3 gene 63.43925 63.45790 positive MGI_C57BL6J_5593399 Gm34240 NCBI_Gene:102637430,ENSEMBL:ENSMUSG00000104336 MGI:5593399 lncRNA gene predicted gene, 34240
3 gene 63.48110 63.48391 negative MGI_C57BL6J_5593461 Strit1 NCBI_Gene:102637511,ENSEMBL:ENSMUSG00000103476 MGI:5593461 protein coding gene small transmembrane regulator of ion transport 1
3 gene 63.48388 63.48437 positive MGI_C57BL6J_5610507 Gm37279 ENSEMBL:ENSMUSG00000102883 MGI:5610507 unclassified gene predicted gene, 37279
3 gene 63.48899 63.48910 positive MGI_C57BL6J_5454723 Gm24946 ENSEMBL:ENSMUSG00000088957 MGI:5454723 snRNA gene predicted gene, 24946
3 gene 63.69620 63.89972 negative MGI_C57BL6J_2683547 Plch1 NCBI_Gene:269437,ENSEMBL:ENSMUSG00000036834 MGI:2683547 protein coding gene phospholipase C, eta 1
3 gene 63.77021 63.77031 positive MGI_C57BL6J_5453277 Gm23500 ENSEMBL:ENSMUSG00000088360 MGI:5453277 snRNA gene predicted gene, 23500
3 gene 63.79610 63.83685 positive MGI_C57BL6J_5826444 Gm46807 NCBI_Gene:108168874 MGI:5826444 lncRNA gene predicted gene, 46807
3 pseudogene 63.82579 63.82644 positive MGI_C57BL6J_3802047 Gm16162 ENSEMBL:ENSMUSG00000090131 MGI:3802047 pseudogene predicted gene 16162
3 pseudogene 63.84312 63.84407 positive MGI_C57BL6J_3801947 Gm16129 ENSEMBL:ENSMUSG00000085290 MGI:3801947 pseudogene predicted gene 16129
3 pseudogene 63.90543 63.90573 positive MGI_C57BL6J_5593538 Gm34379 NCBI_Gene:102637617,ENSEMBL:ENSMUSG00000103905 MGI:5593538 pseudogene predicted gene, 34379
3 gene 63.91468 63.92947 negative MGI_C57BL6J_3607716 E130311K13Rik NCBI_Gene:329659,ENSEMBL:ENSMUSG00000048581 MGI:3607716 protein coding gene RIKEN cDNA E130311K13 gene
3 gene 63.93351 63.96477 negative MGI_C57BL6J_1332247 Slc33a1 NCBI_Gene:11416,ENSEMBL:ENSMUSG00000027822 MGI:1332247 protein coding gene solute carrier family 33 (acetyl-CoA transporter), member 1
3 gene 63.96363 63.96866 positive MGI_C57BL6J_5477344 Gm26850 ENSEMBL:ENSMUSG00000097724 MGI:5477344 lncRNA gene predicted gene, 26850
3 gene 63.96482 64.02258 positive MGI_C57BL6J_2448526 Gmps NCBI_Gene:229363,ENSEMBL:ENSMUSG00000027823 MGI:2448526 protein coding gene guanine monophosphate synthetase
3 pseudogene 64.05303 64.05561 negative MGI_C57BL6J_3757653 Vmn2r-ps3 NCBI_Gene:100124546,ENSEMBL:ENSMUSG00000090303 MGI:3757653 pseudogene vomeronasal 2, receptor, pseudogene 3
3 gene 64.07977 64.22085 positive MGI_C57BL6J_3645892 Vmn2r1 NCBI_Gene:56544,ENSEMBL:ENSMUSG00000027824 MGI:3645892 protein coding gene vomeronasal 2, receptor 1
3 gene 64.10963 64.10974 positive MGI_C57BL6J_5451942 Gm22165 ENSEMBL:ENSMUSG00000089039 MGI:5451942 snRNA gene predicted gene, 22165
3 gene 64.11528 64.17092 negative MGI_C57BL6J_3757666 Vmn2r2 NCBI_Gene:100125586,ENSEMBL:ENSMUSG00000043897 MGI:3757666 protein coding gene vomeronasal 2, receptor 2
3 pseudogene 64.16339 64.16385 positive MGI_C57BL6J_3779465 Gm5139 NCBI_Gene:380739,ENSEMBL:ENSMUSG00000093447 MGI:3779465 pseudogene predicted gene 5139
3 pseudogene 64.19557 64.21368 negative MGI_C57BL6J_5010479 Gm18294 NCBI_Gene:100416861,ENSEMBL:ENSMUSG00000093416 MGI:5010479 pseudogene predicted gene, 18294
3 gene 64.23373 64.23546 positive MGI_C57BL6J_5593621 Gm34462 NCBI_Gene:102637724 MGI:5593621 lncRNA gene predicted gene, 34462
3 gene 64.25722 64.28971 negative MGI_C57BL6J_3643995 Vmn2r3 NCBI_Gene:637004,ENSEMBL:ENSMUSG00000091572 MGI:3643995 protein coding gene vomeronasal 2, receptor 3
3 gene 64.27582 64.27619 negative MGI_C57BL6J_1345615 Ifld3 NA NA unclassified gene induced in fatty liver dystrophy 3
3 gene 64.31841 64.31856 negative MGI_C57BL6J_5453674 Gm23897 ENSEMBL:ENSMUSG00000088735 MGI:5453674 snoRNA gene predicted gene, 23897
3 pseudogene 64.32866 64.33285 positive MGI_C57BL6J_3757669 Vmn2r-ps4 NCBI_Gene:100124547,ENSEMBL:ENSMUSG00000093503 MGI:3757669 pseudogene vomeronasal 2, receptor, pseudogene 4
3 pseudogene 64.33956 64.35772 negative MGI_C57BL6J_3645404 Vmn2r-ps5 NCBI_Gene:667031,ENSEMBL:ENSMUSG00000091967 MGI:3645404 polymorphic pseudogene vomeronasal 2, receptor, pseudogene 5
3 gene 64.38304 64.41537 negative MGI_C57BL6J_3648229 Vmn2r4 NCBI_Gene:637053,ENSEMBL:ENSMUSG00000092049 MGI:3648229 protein coding gene vomeronasal 2, receptor 4
3 pseudogene 64.43688 64.43829 negative MGI_C57BL6J_3757678 Vmn2r-ps6 NCBI_Gene:100124548,ENSEMBL:ENSMUSG00000093395 MGI:3757678 pseudogene vomeronasal 2, receptor, pseudogene 6
3 pseudogene 64.44260 64.44397 negative MGI_C57BL6J_3757679 Vmn2r-ps7 NCBI_Gene:672951,ENSEMBL:ENSMUSG00000093546 MGI:3757679 pseudogene vomeronasal 2, receptor, pseudogene 7
3 pseudogene 64.44797 64.46009 positive MGI_C57BL6J_5313103 Gm20656 ENSEMBL:ENSMUSG00000093671 MGI:5313103 pseudogene predicted gene 20656
3 pseudogene 64.47702 64.47932 positive MGI_C57BL6J_3757680 Vmn2r-ps8 NCBI_Gene:100124549,ENSEMBL:ENSMUSG00000094482 MGI:3757680 pseudogene vomeronasal 2, receptor, pseudogene 8
3 gene 64.48861 64.50984 negative MGI_C57BL6J_3649074 Vmn2r5 NCBI_Gene:667060,ENSEMBL:ENSMUSG00000068999 MGI:3649074 protein coding gene vomeronasal 2, receptor 5
3 gene 64.53131 64.56583 negative MGI_C57BL6J_3649068 Vmn2r6 NCBI_Gene:667069,ENSEMBL:ENSMUSG00000090581 MGI:3649068 protein coding gene vomeronasal 2, receptor 6
3 pseudogene 64.59152 64.59290 negative MGI_C57BL6J_3757686 Vmn2r-ps9 NCBI_Gene:100124550,ENSEMBL:ENSMUSG00000093699 MGI:3757686 pseudogene vomeronasal 2, receptor, pseudogene 9
3 pseudogene 64.59691 64.60577 positive MGI_C57BL6J_5313104 Gm20657 ENSEMBL:ENSMUSG00000093484 MGI:5313104 pseudogene predicted gene 20657
3 pseudogene 64.60043 64.60114 positive MGI_C57BL6J_3781218 Gm3040 NCBI_Gene:100416170 MGI:3781218 pseudogene predicted gene 3040
3 pseudogene 64.62169 64.62399 positive MGI_C57BL6J_3757943 Vmn2r-ps10 NCBI_Gene:100124554,ENSEMBL:ENSMUSG00000095107 MGI:3757943 pseudogene vomeronasal 2, receptor, pseudogene 10
3 pseudogene 64.63257 64.84474 negative MGI_C57BL6J_2441682 Vmn2r-ps11 NCBI_Gene:319210,ENSEMBL:ENSMUSG00000093434 MGI:2441682 pseudogene vomeronasal 2, receptor, pseudogene 11
3 gene 64.63286 64.84474 negative MGI_C57BL6J_5504054 Gm26939 ENSEMBL:ENSMUSG00000097538 MGI:5504054 lncRNA gene predicted gene, 26939
3 gene 64.68504 64.84476 negative MGI_C57BL6J_2441693 Vmn2r7 NCBI_Gene:319217,ENSEMBL:ENSMUSG00000062200 MGI:2441693 protein coding gene vomeronasal 2, receptor 7
3 pseudogene 64.74475 64.74564 negative MGI_C57BL6J_3757944 Vmn2r-ps12 NCBI_Gene:100125273,ENSEMBL:ENSMUSG00000093474 MGI:3757944 pseudogene vomeronasal 2, receptor, pseudogene 12
3 gene 64.89447 64.89460 negative MGI_C57BL6J_5454999 Gm25222 ENSEMBL:ENSMUSG00000088824 MGI:5454999 snoRNA gene predicted gene, 25222
3 pseudogene 64.89885 64.89976 positive MGI_C57BL6J_3757946 Vmn2r-ps13 NCBI_Gene:670110,ENSEMBL:ENSMUSG00000093767 MGI:3757946 pseudogene vomeronasal 2, receptor, pseudogene 13
3 gene 64.94905 65.37823 positive MGI_C57BL6J_109155 Kcnab1 NCBI_Gene:16497,ENSEMBL:ENSMUSG00000027827 MGI:109155 protein coding gene potassium voltage-gated channel, shaker-related subfamily, beta member 1
3 gene 64.94922 65.22370 positive MGI_C57BL6J_5611276 Gm38048 ENSEMBL:ENSMUSG00000102437 MGI:5611276 lncRNA gene predicted gene, 38048
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 65.49409 65.49563 negative MGI_C57BL6J_5593939 Gm34780 NCBI_Gene:102638146,ENSEMBL:ENSMUSG00000103513 MGI:5593939 lncRNA gene predicted gene, 34780
3 gene 65.49517 65.51729 positive MGI_C57BL6J_5622951 Gm40066 NCBI_Gene:105244461 MGI:5622951 lncRNA gene predicted gene, 40066
3 pseudogene 65.50628 65.50664 negative MGI_C57BL6J_5610237 Gm37009 ENSEMBL:ENSMUSG00000103880 MGI:5610237 pseudogene predicted gene, 37009
3 gene 65.50646 65.52004 negative MGI_C57BL6J_5621388 Gm38503 NCBI_Gene:102637953 MGI:5621388 lncRNA gene predicted gene, 38503
3 gene 65.50726 65.52941 negative MGI_C57BL6J_1918254 4931440P22Rik NCBI_Gene:71004,ENSEMBL:ENSMUSG00000074580 MGI:1918254 lncRNA gene RIKEN cDNA 4931440P22 gene
3 gene 65.52570 65.52579 positive MGI_C57BL6J_5452056 Gm22279 ENSEMBL:ENSMUSG00000087825 MGI:5452056 snRNA gene predicted gene, 22279
3 gene 65.52841 65.55552 positive MGI_C57BL6J_2159210 Tiparp NCBI_Gene:99929,ENSEMBL:ENSMUSG00000034640 MGI:2159210 protein coding gene TCDD-inducible poly(ADP-ribose) polymerase
3 gene 65.57522 65.58085 negative MGI_C57BL6J_5594083 Gm34924 NCBI_Gene:102638334 MGI:5594083 lncRNA gene predicted gene, 34924
3 pseudogene 65.61350 65.61532 positive MGI_C57BL6J_3648046 Gm5847 NCBI_Gene:545530,ENSEMBL:ENSMUSG00000082280 MGI:3648046 pseudogene predicted gene 5847
3 pseudogene 65.61537 65.61617 negative MGI_C57BL6J_5611461 Gm38233 ENSEMBL:ENSMUSG00000103294 MGI:5611461 pseudogene predicted gene, 38233
3 gene 65.65929 65.65943 positive MGI_C57BL6J_5531019 Mir8120 miRBase:MI0026052,NCBI_Gene:102465905,ENSEMBL:ENSMUSG00000098944 MGI:5531019 miRNA gene microRNA 8120
3 gene 65.65954 65.83248 positive MGI_C57BL6J_3645902 Lekr1 NCBI_Gene:624866,ENSEMBL:ENSMUSG00000074579 MGI:3645902 protein coding gene leucine, glutamate and lysine rich 1
3 gene 65.67839 65.68088 positive MGI_C57BL6J_5611004 Gm37776 ENSEMBL:ENSMUSG00000104037 MGI:5611004 unclassified gene predicted gene, 37776
3 gene 65.77151 65.77162 negative MGI_C57BL6J_5455532 Gm25755 ENSEMBL:ENSMUSG00000065330 MGI:5455532 snRNA gene predicted gene, 25755
3 gene 65.82912 65.87228 negative MGI_C57BL6J_5610587 Gm37359 ENSEMBL:ENSMUSG00000103620 MGI:5610587 lncRNA gene predicted gene, 37359
3 gene 65.86327 65.86483 negative MGI_C57BL6J_5610359 Gm37131 ENSEMBL:ENSMUSG00000103440 MGI:5610359 unclassified gene predicted gene, 37131
3 gene 65.92610 65.92828 negative MGI_C57BL6J_5594198 Gm35039 NCBI_Gene:102638487 MGI:5594198 lncRNA gene predicted gene, 35039
3 pseudogene 65.93349 65.93391 negative MGI_C57BL6J_5610265 Gm37037 ENSEMBL:ENSMUSG00000102566 MGI:5610265 pseudogene predicted gene, 37037
3 gene 65.94591 65.95839 negative MGI_C57BL6J_1922664 Ccnl1 NCBI_Gene:56706,ENSEMBL:ENSMUSG00000027829 MGI:1922664 protein coding gene cyclin L1
3 gene 65.95776 65.96204 positive MGI_C57BL6J_5610533 Gm37305 ENSEMBL:ENSMUSG00000103041 MGI:5610533 lncRNA gene predicted gene, 37305
3 pseudogene 65.96873 65.97028 negative MGI_C57BL6J_5594265 Gm35106 NCBI_Gene:105244463,ENSEMBL:ENSMUSG00000102914 MGI:5594265 pseudogene predicted gene, 35106
3 gene 65.96991 65.97192 positive MGI_C57BL6J_5610306 Gm37078 ENSEMBL:ENSMUSG00000102652 MGI:5610306 unclassified gene predicted gene, 37078
3 pseudogene 65.98716 65.98975 negative MGI_C57BL6J_5011209 Gm19024 NCBI_Gene:100418133,ENSEMBL:ENSMUSG00000103641 MGI:5011209 pseudogene predicted gene, 19024
3 pseudogene 66.02950 66.03152 negative MGI_C57BL6J_3643872 Gm6546 NCBI_Gene:625048,ENSEMBL:ENSMUSG00000103369 MGI:3643872 pseudogene predicted gene 6546
3 gene 66.05356 66.29707 negative MGI_C57BL6J_1920039 Veph1 NCBI_Gene:72789,ENSEMBL:ENSMUSG00000027831 MGI:1920039 protein coding gene ventricular zone expressed PH domain-containing 1
3 gene 66.08668 66.08779 positive MGI_C57BL6J_5611050 Gm37822 ENSEMBL:ENSMUSG00000104189 MGI:5611050 unclassified gene predicted gene, 37822
3 gene 66.08811 66.08826 negative MGI_C57BL6J_5456219 Gm26442 ENSEMBL:ENSMUSG00000064522 MGI:5456219 snRNA gene predicted gene, 26442
3 pseudogene 66.09981 66.10006 positive MGI_C57BL6J_5610201 Gm36973 ENSEMBL:ENSMUSG00000104307 MGI:5610201 pseudogene predicted gene, 36973
3 pseudogene 66.12840 66.12975 negative MGI_C57BL6J_98800 Tpi-rs2 NCBI_Gene:111205,ENSEMBL:ENSMUSG00000097968 MGI:98800 pseudogene triosephosphate isomerase related sequence 2
3 pseudogene 66.19109 66.19124 negative MGI_C57BL6J_5610558 Gm37330 ENSEMBL:ENSMUSG00000103208 MGI:5610558 pseudogene predicted gene, 37330
3 gene 66.21989 66.22581 positive MGI_C57BL6J_104641 Ptx3 NCBI_Gene:19288,ENSEMBL:ENSMUSG00000027832 MGI:104641 protein coding gene pentraxin related gene
3 pseudogene 66.36454 66.36463 positive MGI_C57BL6J_6275305 Gm50014 ENSEMBL:ENSMUSG00000117623 MGI:6275305 pseudogene predicted gene, 50014
3 gene 66.37430 66.38810 positive MGI_C57BL6J_5594343 Gm35184 NCBI_Gene:102638679 MGI:5594343 lncRNA gene predicted gene, 35184
3 gene 66.40041 66.40607 positive MGI_C57BL6J_5594395 Gm35236 NCBI_Gene:102638746 MGI:5594395 lncRNA gene predicted gene, 35236
3 pseudogene 66.56278 66.56355 negative MGI_C57BL6J_5010137 Gm17952 NCBI_Gene:100416166,ENSEMBL:ENSMUSG00000103600 MGI:5010137 pseudogene predicted gene, 17952
3 pseudogene 66.88235 66.88314 positive MGI_C57BL6J_3646021 Gm6555 NCBI_Gene:625115,ENSEMBL:ENSMUSG00000103700 MGI:3646021 pseudogene predicted gene 6555
3 pseudogene 66.90736 66.90777 negative MGI_C57BL6J_5611584 Gm38356 ENSEMBL:ENSMUSG00000103318 MGI:5611584 pseudogene predicted gene, 38356
3 pseudogene 66.95354 66.95386 positive MGI_C57BL6J_5663653 Gm43516 ENSEMBL:ENSMUSG00000105794 MGI:5663653 pseudogene predicted gene 43516
3 gene 66.97172 66.98177 negative MGI_C57BL6J_1201673 Shox2 NCBI_Gene:20429,ENSEMBL:ENSMUSG00000027833 MGI:1201673 protein coding gene short stature homeobox 2
3 gene 66.98139 67.35840 positive MGI_C57BL6J_1914130 Rsrc1 NCBI_Gene:66880,ENSEMBL:ENSMUSG00000034544 MGI:1914130 protein coding gene arginine/serine-rich coiled-coil 1
3 gene 67.05596 67.05606 positive MGI_C57BL6J_5452072 Gm22295 ENSEMBL:ENSMUSG00000065245 MGI:5452072 snRNA gene predicted gene, 22295
3 gene 67.36546 67.37516 negative MGI_C57BL6J_4937036 Gm17402 ENSEMBL:ENSMUSG00000090408 MGI:4937036 protein coding gene predicted gene, 17402
3 gene 67.37410 67.40000 positive MGI_C57BL6J_1341819 Mlf1 NCBI_Gene:17349,ENSEMBL:ENSMUSG00000048416 MGI:1341819 protein coding gene myeloid leukemia factor 1
3 gene 67.43010 67.47653 positive MGI_C57BL6J_107339 Gfm1 NCBI_Gene:28030,ENSEMBL:ENSMUSG00000027774 MGI:107339 protein coding gene G elongation factor, mitochondrial 1
3 gene 67.45800 67.46393 negative MGI_C57BL6J_107633 Lxn NCBI_Gene:17035,ENSEMBL:ENSMUSG00000047557 MGI:107633 protein coding gene latexin
3 gene 67.47698 67.47882 positive MGI_C57BL6J_5662705 Gm42568 ENSEMBL:ENSMUSG00000103703 MGI:5662705 unclassified gene predicted gene 42568
3 gene 67.47889 67.51552 negative MGI_C57BL6J_1924461 Rarres1 NCBI_Gene:109222,ENSEMBL:ENSMUSG00000049404 MGI:1924461 protein coding gene retinoic acid receptor responder (tazarotene induced) 1
3 gene 67.51567 67.51966 positive MGI_C57BL6J_5622952 Gm40067 NCBI_Gene:105244464 MGI:5622952 lncRNA gene predicted gene, 40067
3 gene 67.52266 67.55343 negative MGI_C57BL6J_5594458 Gm35299 NCBI_Gene:102638825,ENSEMBL:ENSMUSG00000103718 MGI:5594458 lncRNA gene predicted gene, 35299
3 gene 67.57057 67.57282 negative MGI_C57BL6J_1921179 4930402C01Rik ENSEMBL:ENSMUSG00000104382 MGI:1921179 lncRNA gene RIKEN cDNA 4930402C01 gene
3 gene 67.57316 67.57329 negative MGI_C57BL6J_5455696 Gm25919 ENSEMBL:ENSMUSG00000077459 MGI:5455696 snoRNA gene predicted gene, 25919
3 gene 67.58274 67.60424 positive MGI_C57BL6J_1914118 Mfsd1 NCBI_Gene:66868,ENSEMBL:ENSMUSG00000027775 MGI:1914118 protein coding gene major facilitator superfamily domain containing 1
3 pseudogene 67.60575 67.60785 negative MGI_C57BL6J_3648243 Gm8515 NCBI_Gene:667207,ENSEMBL:ENSMUSG00000103206 MGI:3648243 pseudogene predicted gene 8515
3 pseudogene 67.61978 67.62073 negative MGI_C57BL6J_2685258 Gm412 NCBI_Gene:208424,ENSEMBL:ENSMUSG00000103606 MGI:2685258 pseudogene predicted gene 412
3 pseudogene 67.68436 67.68475 negative MGI_C57BL6J_5610829 Gm37601 ENSEMBL:ENSMUSG00000102746 MGI:5610829 pseudogene predicted gene, 37601
3 pseudogene 67.74197 67.74330 negative MGI_C57BL6J_5010902 Gm18717 NCBI_Gene:100417618,ENSEMBL:ENSMUSG00000104477 MGI:5010902 pseudogene predicted gene, 18717
3 gene 67.75360 67.75565 positive MGI_C57BL6J_5594566 Gm35407 NCBI_Gene:102638975 MGI:5594566 lncRNA gene predicted gene, 35407
3 gene 67.75566 67.76628 positive MGI_C57BL6J_5622953 Gm40068 NCBI_Gene:105244465 MGI:5622953 lncRNA gene predicted gene, 40068
3 gene 67.89222 68.05659 positive MGI_C57BL6J_3644166 Iqcj NCBI_Gene:208426,ENSEMBL:ENSMUSG00000051777 MGI:3644166 protein coding gene IQ motif containing J
3 gene 67.89222 68.62648 positive MGI_C57BL6J_5439400 Iqschfp NCBI_Gene:100505386,ENSEMBL:ENSMUSG00000102422 MGI:5439400 protein coding gene Iqcj and Schip1 fusion protein
3 gene 68.06480 68.62648 positive MGI_C57BL6J_1353557 Schip1 NCBI_Gene:30953,ENSEMBL:ENSMUSG00000027777 MGI:1353557 protein coding gene schwannomin interacting protein 1
3 pseudogene 68.30377 68.31036 negative MGI_C57BL6J_3648047 Gm5848 NCBI_Gene:545531 MGI:3648047 pseudogene predicted pseudogene 5848
3 pseudogene 68.33319 68.33378 positive MGI_C57BL6J_3642851 Gm10292 NCBI_Gene:631379,ENSEMBL:ENSMUSG00000102846 MGI:3642851 pseudogene predicted gene 10292
3 gene 68.40778 68.41470 positive MGI_C57BL6J_3641783 Gm10723 ENSEMBL:ENSMUSG00000103345 MGI:3641783 unclassified gene predicted gene 10723
3 gene 68.54752 68.54771 negative MGI_C57BL6J_5451850 Gm22073 ENSEMBL:ENSMUSG00000084617 MGI:5451850 snRNA gene predicted gene, 22073
3 gene 68.69064 68.69855 positive MGI_C57BL6J_96539 Il12a NCBI_Gene:16159,ENSEMBL:ENSMUSG00000027776 MGI:96539 protein coding gene interleukin 12a
3 pseudogene 68.73314 68.73808 positive MGI_C57BL6J_3708676 Gm10040 ENSEMBL:ENSMUSG00000058360 MGI:3708676 pseudogene predicted gene 10040
3 gene 68.75991 68.76143 negative MGI_C57BL6J_1922468 4930535E02Rik ENSEMBL:ENSMUSG00000102677 MGI:1922468 lncRNA gene RIKEN cDNA 4930535E02 gene
3 gene 68.76136 68.76267 positive MGI_C57BL6J_5594743 Gm35584 NCBI_Gene:102639225,ENSEMBL:ENSMUSG00000102936 MGI:5594743 lncRNA gene predicted gene, 35584
3 pseudogene 68.84608 68.84741 positive MGI_C57BL6J_3644317 Gm7270 NCBI_Gene:639530,ENSEMBL:ENSMUSG00000103218,ENSEMBL:ENSMUSG00000102853 MGI:3644317 pseudogene predicted gene 7270
3 gene 68.86792 68.87027 negative MGI_C57BL6J_4937275 Gm17641 ENSEMBL:ENSMUSG00000091272 MGI:4937275 protein coding gene predicted gene, 17641
3 gene 68.86959 68.87216 positive MGI_C57BL6J_1915975 1110032F04Rik NCBI_Gene:68725,ENSEMBL:ENSMUSG00000046999 MGI:1915975 protein coding gene RIKEN cDNA 1110032F04 gene
3 gene 68.89250 69.00464 negative MGI_C57BL6J_1915509 Ift80 NCBI_Gene:68259,ENSEMBL:ENSMUSG00000027778 MGI:1915509 protein coding gene intraflagellar transport 80
3 pseudogene 68.90017 68.90045 negative MGI_C57BL6J_5313136 Gm20689 ENSEMBL:ENSMUSG00000093384 MGI:5313136 pseudogene predicted gene 20689
3 pseudogene 68.90181 68.90216 positive MGI_C57BL6J_5313137 Gm20690 ENSEMBL:ENSMUSG00000093730,ENSEMBL:ENSMUSG00000103007 MGI:5313137 pseudogene predicted gene 20690
3 pseudogene 68.90216 68.90278 negative MGI_C57BL6J_5010773 Gm18588 NCBI_Gene:100417394,ENSEMBL:ENSMUSG00000093402 MGI:5010773 pseudogene predicted gene, 18588
3 pseudogene 68.90382 68.90415 negative MGI_C57BL6J_5313138 Gm20691 ENSEMBL:ENSMUSG00000093505 MGI:5313138 pseudogene predicted gene 20691
3 gene 68.91650 68.91732 negative MGI_C57BL6J_6097561 Gm48183 ENSEMBL:ENSMUSG00000111756 MGI:6097561 unclassified gene predicted gene, 48183
3 gene 69.00474 69.03462 positive MGI_C57BL6J_1917349 Smc4 NCBI_Gene:70099,ENSEMBL:ENSMUSG00000034349 MGI:1917349 protein coding gene structural maintenance of chromosomes 4
3 gene 69.00977 69.00983 positive MGI_C57BL6J_2676842 Mir15b miRBase:MI0000140,NCBI_Gene:387175,ENSEMBL:ENSMUSG00000065580 MGI:2676842 miRNA gene microRNA 15b
3 gene 69.00990 69.01000 positive MGI_C57BL6J_3618690 Mir16-2 miRBase:MI0000566,NCBI_Gene:723949,ENSEMBL:ENSMUSG00000065606 MGI:3618690 miRNA gene microRNA 16-2
3 gene 69.03529 69.04640 negative MGI_C57BL6J_1914199 Trim59 NCBI_Gene:66949,ENSEMBL:ENSMUSG00000034317 MGI:1914199 protein coding gene tripartite motif-containing 59
3 gene 69.06065 69.06525 positive MGI_C57BL6J_2442898 9630025H16Rik NCBI_Gene:105244467 MGI:2442898 lncRNA gene RIKEN cDNA 9630025H16 gene
3 gene 69.06715 69.12711 negative MGI_C57BL6J_1100848 Kpna4 NCBI_Gene:16649,ENSEMBL:ENSMUSG00000027782 MGI:1100848 protein coding gene karyopherin (importin) alpha 4
3 gene 69.08510 69.08545 negative MGI_C57BL6J_5451786 Gm22009 ENSEMBL:ENSMUSG00000089417 MGI:5451786 snoRNA gene predicted gene, 22009
3 gene 69.11974 69.12272 negative MGI_C57BL6J_5610786 Gm37558 ENSEMBL:ENSMUSG00000103094 MGI:5610786 unclassified gene predicted gene, 37558
3 gene 69.13123 69.15718 positive MGI_C57BL6J_2686493 Gm1647 NCBI_Gene:381452,ENSEMBL:ENSMUSG00000094763 MGI:2686493 lncRNA gene predicted gene 1647
3 gene 69.22242 69.22362 positive MGI_C57BL6J_1918869 Arl14 NCBI_Gene:71619,ENSEMBL:ENSMUSG00000098207 MGI:1918869 protein coding gene ADP-ribosylation factor-like 14
3 gene 69.25461 69.26383 positive MGI_C57BL6J_5622955 Gm40070 NCBI_Gene:105244468 MGI:5622955 lncRNA gene predicted gene, 40070
3 gene 69.31686 69.56080 positive MGI_C57BL6J_2139740 Ppm1l NCBI_Gene:242083,ENSEMBL:ENSMUSG00000027784 MGI:2139740 protein coding gene protein phosphatase 1 (formerly 2C)-like
3 gene 69.31816 69.31929 negative MGI_C57BL6J_1920514 1700037N05Rik NA NA unclassified gene RIKEN cDNA 1700037N05 gene
3 pseudogene 69.32001 69.32062 negative MGI_C57BL6J_4938041 Gm17214 NCBI_Gene:100416279,ENSEMBL:ENSMUSG00000091315 MGI:4938041 pseudogene predicted gene 17214
3 pseudogene 69.33519 69.33579 negative MGI_C57BL6J_4938039 Gm17212 NCBI_Gene:100416280,ENSEMBL:ENSMUSG00000090941 MGI:4938039 pseudogene predicted gene 17212
3 gene 69.37640 69.38370 positive MGI_C57BL6J_2443158 A330078L11Rik NA NA unclassified gene RIKEN cDNA A330078L11 gene
3 pseudogene 69.43101 69.43238 negative MGI_C57BL6J_4938040 Gm17213 NCBI_Gene:100417908,ENSEMBL:ENSMUSG00000090743 MGI:4938040 pseudogene predicted gene 17213
3 pseudogene 69.56624 69.56747 negative MGI_C57BL6J_3644126 Gm8565 NCBI_Gene:667309,ENSEMBL:ENSMUSG00000098006 MGI:3644126 pseudogene predicted gene 8565
3 gene 69.57392 69.59896 negative MGI_C57BL6J_1349405 B3galnt1 NCBI_Gene:26879,ENSEMBL:ENSMUSG00000043300 MGI:1349405 protein coding gene UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1
3 pseudogene 69.66177 69.66216 positive MGI_C57BL6J_5610608 Gm37380 ENSEMBL:ENSMUSG00000102342 MGI:5610608 pseudogene predicted gene, 37380
3 gene 69.68547 69.68558 positive MGI_C57BL6J_5455398 Gm25621 ENSEMBL:ENSMUSG00000087848 MGI:5455398 rRNA gene predicted gene, 25621
3 pseudogene 69.71694 69.71744 negative MGI_C57BL6J_98039 Rpl32-ps NCBI_Gene:19952,ENSEMBL:ENSMUSG00000068969 MGI:98039 pseudogene ribosomal protein L32, pseudogene
3 gene 69.72199 69.75637 positive MGI_C57BL6J_2140103 Nmd3 NCBI_Gene:97112,ENSEMBL:ENSMUSG00000027787 MGI:2140103 protein coding gene NMD3 ribosome export adaptor
3 gene 69.75311 69.75637 positive MGI_C57BL6J_2442565 9530051E23Rik NA NA unclassified gene RIKEN cDNA 9530051E23 gene
3 pseudogene 69.80846 69.80902 negative MGI_C57BL6J_5011240 Gm19055 NCBI_Gene:100418175 MGI:5011240 pseudogene predicted gene, 19055
3 gene 69.81954 69.85994 negative MGI_C57BL6J_1913433 Sptssb NCBI_Gene:66183,ENSEMBL:ENSMUSG00000043461 MGI:1913433 protein coding gene serine palmitoyltransferase, small subunit B
3 gene 69.88247 69.88411 positive MGI_C57BL6J_5594976 Gm35817 NCBI_Gene:102639522 MGI:5594976 lncRNA gene predicted gene, 35817
3 pseudogene 69.95481 69.95568 negative MGI_C57BL6J_5010080 Gm17895 NCBI_Gene:100416058,ENSEMBL:ENSMUSG00000103549 MGI:5010080 pseudogene predicted gene, 17895
3 gene 69.96232 69.96245 negative MGI_C57BL6J_5453261 Gm23484 ENSEMBL:ENSMUSG00000077366 MGI:5453261 snoRNA gene predicted gene, 23484
3 pseudogene 69.96328 69.96347 positive MGI_C57BL6J_5611012 Gm37784 ENSEMBL:ENSMUSG00000102525 MGI:5611012 pseudogene predicted gene, 37784
3 gene 70.00761 70.02871 positive MGI_C57BL6J_2685260 Otol1 NCBI_Gene:229389,ENSEMBL:ENSMUSG00000027788 MGI:2685260 protein coding gene otolin 1
3 pseudogene 70.05975 70.06047 positive MGI_C57BL6J_5610909 Gm37681 ENSEMBL:ENSMUSG00000103020 MGI:5610909 pseudogene predicted gene, 37681
3 pseudogene 70.11625 70.11653 negative MGI_C57BL6J_5610813 Gm37585 ENSEMBL:ENSMUSG00000103113 MGI:5610813 pseudogene predicted gene, 37585
3 gene 70.22875 70.22887 negative MGI_C57BL6J_5453254 Gm23477 ENSEMBL:ENSMUSG00000089507 MGI:5453254 snoRNA gene predicted gene, 23477
3 pseudogene 70.41328 70.41388 positive MGI_C57BL6J_3644892 Gm6631 NCBI_Gene:625868,ENSEMBL:ENSMUSG00000102663 MGI:3644892 pseudogene predicted gene 6631
3 pseudogene 70.56626 70.56730 negative MGI_C57BL6J_5610441 Gm37213 ENSEMBL:ENSMUSG00000104023 MGI:5610441 pseudogene predicted gene, 37213
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 pseudogene 72.60384 72.60435 negative MGI_C57BL6J_5611129 Gm37901 ENSEMBL:ENSMUSG00000103078 MGI:5611129 pseudogene predicted gene, 37901
3 gene 72.73783 72.73798 negative MGI_C57BL6J_5452228 Gm22451 ENSEMBL:ENSMUSG00000084752 MGI:5452228 snRNA gene predicted gene, 22451
3 gene 72.88855 72.96786 negative MGI_C57BL6J_1917233 Sis NCBI_Gene:69983,ENSEMBL:ENSMUSG00000027790 MGI:1917233 protein coding gene sucrase isomaltase (alpha-glucosidase)
3 gene 73.04197 73.04384 negative MGI_C57BL6J_5610284 Gm37056 ENSEMBL:ENSMUSG00000102753 MGI:5610284 unclassified gene predicted gene, 37056
3 gene 73.04725 73.05788 negative MGI_C57BL6J_2679447 Slitrk3 NCBI_Gene:386750,ENSEMBL:ENSMUSG00000048304 MGI:2679447 protein coding gene SLIT and NTRK-like family, member 3
3 gene 73.06632 73.59483 positive MGI_C57BL6J_5434110 Gm20754 NCBI_Gene:626082,ENSEMBL:ENSMUSG00000103428 MGI:5434110 lncRNA gene predicted gene, 20754
3 gene 73.14685 73.14696 positive MGI_C57BL6J_5454321 Gm24544 ENSEMBL:ENSMUSG00000077050 MGI:5454321 miRNA gene predicted gene, 24544
3 gene 73.16409 73.16621 positive MGI_C57BL6J_5610953 Gm37725 ENSEMBL:ENSMUSG00000102916 MGI:5610953 unclassified gene predicted gene, 37725
3 gene 73.20770 73.20800 negative MGI_C57BL6J_5452315 Gm22538 ENSEMBL:ENSMUSG00000088794 MGI:5452315 unclassified non-coding RNA gene predicted gene, 22538
3 gene 73.32943 73.47001 positive MGI_C57BL6J_5611581 Gm38353 ENSEMBL:ENSMUSG00000102820 MGI:5611581 lncRNA gene predicted gene, 38353
3 gene 73.35121 73.48165 negative MGI_C57BL6J_1921943 4930509J09Rik NCBI_Gene:74693,ENSEMBL:ENSMUSG00000102362 MGI:1921943 lncRNA gene RIKEN cDNA 4930509J09 gene
3 gene 73.63581 73.70844 negative MGI_C57BL6J_894278 Bche NCBI_Gene:12038,ENSEMBL:ENSMUSG00000027792 MGI:894278 protein coding gene butyrylcholinesterase
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 pseudogene 73.93305 73.93412 positive MGI_C57BL6J_3644686 Gm8625 NCBI_Gene:667425,ENSEMBL:ENSMUSG00000102859 MGI:3644686 pseudogene predicted gene 8625
3 gene 74.00922 74.01728 negative MGI_C57BL6J_5012541 Gm20356 NCBI_Gene:100504692,ENSEMBL:ENSMUSG00000104096 MGI:5012541 lncRNA gene predicted gene, 20356
3 gene 74.10541 74.12645 negative MGI_C57BL6J_5595228 Gm36069 NCBI_Gene:102639855 MGI:5595228 lncRNA gene predicted gene, 36069
3 pseudogene 74.24226 74.29687 negative MGI_C57BL6J_3779552 Gm6098 NCBI_Gene:100861784,ENSEMBL:ENSMUSG00000096400 MGI:3779552 pseudogene predicted gene 6098
3 pseudogene 74.32353 74.32399 negative MGI_C57BL6J_5610278 Gm37050 ENSEMBL:ENSMUSG00000104227 MGI:5610278 pseudogene predicted gene, 37050
3 pseudogene 74.81472 74.81534 positive MGI_C57BL6J_3647458 Gm8643 NCBI_Gene:108168917,ENSEMBL:ENSMUSG00000102809 MGI:3647458 pseudogene predicted gene 8643
3 gene 75.02240 75.02461 negative MGI_C57BL6J_5610692 Gm37464 ENSEMBL:ENSMUSG00000102420 MGI:5610692 unclassified gene predicted gene, 37464
3 gene 75.03790 75.16505 negative MGI_C57BL6J_2674085 Zbbx NCBI_Gene:213234,ENSEMBL:ENSMUSG00000034151 MGI:2674085 protein coding gene zinc finger, B-box domain containing
3 gene 75.16506 75.20808 positive MGI_C57BL6J_5622956 Gm40071 NCBI_Gene:105244469 MGI:5622956 lncRNA gene predicted gene, 40071
3 gene 75.24236 75.27008 negative MGI_C57BL6J_1915181 Serpini2 NCBI_Gene:67931,ENSEMBL:ENSMUSG00000034139 MGI:1915181 protein coding gene serine (or cysteine) peptidase inhibitor, clade I, member 2
3 gene 75.27393 75.48216 negative MGI_C57BL6J_3645287 Wdr49 NCBI_Gene:213248,ENSEMBL:ENSMUSG00000104301 MGI:3645287 protein coding gene WD repeat domain 49
3 pseudogene 75.39132 75.39264 positive MGI_C57BL6J_5010021 Gm17836 NCBI_Gene:100415953,ENSEMBL:ENSMUSG00000103444 MGI:5010021 pseudogene predicted gene, 17836
3 gene 75.51649 75.55686 negative MGI_C57BL6J_1928396 Pdcd10 NCBI_Gene:56426,ENSEMBL:ENSMUSG00000027835 MGI:1928396 protein coding gene programmed cell death 10
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 75.87508 75.95695 negative MGI_C57BL6J_1920374 Golim4 NCBI_Gene:73124,ENSEMBL:ENSMUSG00000034109 MGI:1920374 protein coding gene golgi integral membrane protein 4
3 gene 75.95212 75.95430 positive MGI_C57BL6J_5610913 Gm37685 ENSEMBL:ENSMUSG00000103024 MGI:5610913 unclassified gene predicted gene, 37685
3 gene 75.95610 76.00114 positive MGI_C57BL6J_5610484 Gm37256 ENSEMBL:ENSMUSG00000104448 MGI:5610484 lncRNA gene predicted gene, 37256
3 pseudogene 76.04092 76.04172 negative MGI_C57BL6J_5010613 Gm18428 NCBI_Gene:100417155,ENSEMBL:ENSMUSG00000104223 MGI:5010613 pseudogene predicted gene, 18428
3 gene 76.07427 76.71002 positive MGI_C57BL6J_2442179 Fstl5 NCBI_Gene:213262,ENSEMBL:ENSMUSG00000034098 MGI:2442179 protein coding gene follistatin-like 5
3 gene 76.54669 76.55025 positive MGI_C57BL6J_5611125 Gm37897 ENSEMBL:ENSMUSG00000103920 MGI:5611125 unclassified gene predicted gene, 37897
3 pseudogene 76.82206 76.82240 positive MGI_C57BL6J_5610518 Gm37290 ENSEMBL:ENSMUSG00000103702 MGI:5610518 pseudogene predicted gene, 37290
3 pseudogene 76.88450 76.88533 positive MGI_C57BL6J_5011416 Gm19231 NCBI_Gene:100418471,ENSEMBL:ENSMUSG00000102216 MGI:5011416 pseudogene predicted gene, 19231
3 gene 77.10521 77.10528 negative MGI_C57BL6J_5453421 Gm23644 ENSEMBL:ENSMUSG00000088481 MGI:5453421 snoRNA gene predicted gene, 23644
3 pseudogene 77.56081 77.56394 negative MGI_C57BL6J_2674154 Dnmt3a-ps1 NCBI_Gene:445261,ENSEMBL:ENSMUSG00000102489 MGI:2674154 pseudogene DNA methyltransferase 3A, pseudogene 1
3 gene 77.56496 77.57134 negative MGI_C57BL6J_5611034 Gm37806 ENSEMBL:ENSMUSG00000103849 MGI:5611034 unclassified gene predicted gene, 37806
3 pseudogene 77.69137 77.69223 negative MGI_C57BL6J_5010480 Gm18295 NCBI_Gene:100416866 MGI:5010480 pseudogene predicted gene, 18295
3 gene 77.70289 77.70439 negative MGI_C57BL6J_5611423 Gm38195 ENSEMBL:ENSMUSG00000102872 MGI:5611423 unclassified gene predicted gene, 38195
3 pseudogene 77.87278 77.87315 negative MGI_C57BL6J_5610804 Gm37576 ENSEMBL:ENSMUSG00000102393 MGI:5610804 pseudogene predicted gene, 37576
3 pseudogene 77.96138 77.96280 positive MGI_C57BL6J_5010904 Gm18719 NCBI_Gene:100417620,ENSEMBL:ENSMUSG00000105026 MGI:5010904 pseudogene predicted gene, 18719
3 pseudogene 78.00646 78.00698 positive MGI_C57BL6J_3648953 Gm6677 NCBI_Gene:626461,ENSEMBL:ENSMUSG00000103312 MGI:3648953 pseudogene predicted gene 6677
3 pseudogene 78.08583 78.08740 negative MGI_C57BL6J_3643677 Gm8684 NCBI_Gene:667526,ENSEMBL:ENSMUSG00000102637 MGI:3643677 pseudogene predicted gene 8684
3 pseudogene 78.13446 78.13558 positive MGI_C57BL6J_3645908 Gm6680 NCBI_Gene:626479,ENSEMBL:ENSMUSG00000103817 MGI:3645908 pseudogene predicted gene 6680
3 gene 78.40430 78.40594 negative MGI_C57BL6J_5663463 Gm43326 ENSEMBL:ENSMUSG00000104782 MGI:5663463 unclassified gene predicted gene 43326
3 gene 78.40616 78.41077 negative MGI_C57BL6J_5595447 Gm36288 NCBI_Gene:102640153 MGI:5595447 lncRNA gene predicted gene, 36288
3 pseudogene 78.48658 78.48868 negative MGI_C57BL6J_3705708 Gm15442 NCBI_Gene:100041691,ENSEMBL:ENSMUSG00000084370 MGI:3705708 pseudogene predicted gene 15442
3 pseudogene 78.75862 78.75946 positive MGI_C57BL6J_5011137 Gm18952 NCBI_Gene:100418022,ENSEMBL:ENSMUSG00000102341 MGI:5011137 pseudogene predicted gene, 18952
3 gene 78.78973 78.79223 negative MGI_C57BL6J_5595500 Gm36341 NCBI_Gene:102640221 MGI:5595500 lncRNA gene predicted gene, 36341
3 gene 78.84222 78.84257 positive MGI_C57BL6J_5454526 Gm24749 ENSEMBL:ENSMUSG00000088463 MGI:5454526 unclassified non-coding RNA gene predicted gene, 24749
3 pseudogene 78.86489 78.86557 negative MGI_C57BL6J_5010138 Gm17953 NCBI_Gene:100416167,ENSEMBL:ENSMUSG00000102438 MGI:5010138 pseudogene predicted gene, 17953
3 pseudogene 78.89183 78.89247 negative MGI_C57BL6J_3646590 Gm5277 NCBI_Gene:383883,ENSEMBL:ENSMUSG00000091361 MGI:3646590 pseudogene predicted gene 5277
3 pseudogene 78.91724 78.91846 positive MGI_C57BL6J_3641638 Gm10291 NCBI_Gene:100041748,ENSEMBL:ENSMUSG00000070443 MGI:3641638 pseudogene predicted pseudogene 10291
3 gene 78.91846 78.93631 negative MGI_C57BL6J_5621427 Gm38542 NCBI_Gene:102641233 MGI:5621427 lncRNA gene predicted gene, 38542
3 pseudogene 78.96549 78.96715 negative MGI_C57BL6J_3704220 Gm9762 NCBI_Gene:100041766,ENSEMBL:ENSMUSG00000037096 MGI:3704220 pseudogene predicted pseudogene 9762
3 gene 78.97992 78.98005 positive MGI_C57BL6J_5453217 Gm23440 ENSEMBL:ENSMUSG00000077487 MGI:5453217 snoRNA gene predicted gene, 23440
3 gene 79.06251 79.28724 negative MGI_C57BL6J_2659071 Rapgef2 NCBI_Gene:76089,ENSEMBL:ENSMUSG00000062232 MGI:2659071 protein coding gene Rap guanine nucleotide exchange factor (GEF) 2
3 gene 79.19637 79.19648 positive MGI_C57BL6J_5453927 Gm24150 ENSEMBL:ENSMUSG00000064693 MGI:5453927 snRNA gene predicted gene, 24150
3 gene 79.21292 79.25391 positive MGI_C57BL6J_1918174 4921511C10Rik NCBI_Gene:70924,ENSEMBL:ENSMUSG00000104585 MGI:1918174 lncRNA gene RIKEN cDNA 4921511C10 gene
3 gene 79.23228 79.23413 negative MGI_C57BL6J_2443462 B930012P20Rik NA NA unclassified gene RIKEN cDNA B930012P20 gene
3 gene 79.28717 79.28985 positive MGI_C57BL6J_2686494 6430573P05Rik ENSEMBL:ENSMUSG00000102545 MGI:2686494 lncRNA gene RIKEN cDNA 6430573P05 gene
3 gene 79.33420 79.33658 negative MGI_C57BL6J_5622957 Gm40072 NCBI_Gene:105244470 MGI:5622957 lncRNA gene predicted gene, 40072
3 gene 79.33666 79.46413 positive MGI_C57BL6J_4936993 Gm17359 NCBI_Gene:100233207,ENSEMBL:ENSMUSG00000091685 MGI:4936993 protein coding gene predicted gene, 17359
3 gene 79.45597 79.56780 negative MGI_C57BL6J_2683054 Fnip2 NCBI_Gene:329679,ENSEMBL:ENSMUSG00000061175 MGI:2683054 protein coding gene folliculin interacting protein 2
3 gene 79.50979 79.51210 negative MGI_C57BL6J_5595601 Gm36442 NCBI_Gene:102640362 MGI:5595601 lncRNA gene predicted gene, 36442
3 gene 79.55131 79.55219 negative MGI_C57BL6J_3781690 Gm3513 ENSEMBL:ENSMUSG00000089746 MGI:3781690 lncRNA gene predicted gene 3513
3 gene 79.56819 79.57332 positive MGI_C57BL6J_1923129 4930589L23Rik NCBI_Gene:75879,ENSEMBL:ENSMUSG00000068957 MGI:1923129 lncRNA gene RIKEN cDNA 4930589L23 gene
3 pseudogene 79.58259 79.58323 positive MGI_C57BL6J_5594226 Gm35067 ENSEMBL:ENSMUSG00000103564 MGI:5594226 pseudogene predicted gene, 35067
3 gene 79.59134 79.60365 positive MGI_C57BL6J_1914988 Ppid NCBI_Gene:67738,ENSEMBL:ENSMUSG00000027804 MGI:1914988 protein coding gene peptidylprolyl isomerase D (cyclophilin D)
3 gene 79.60379 79.62950 negative MGI_C57BL6J_106100 Etfdh NCBI_Gene:66841,ENSEMBL:ENSMUSG00000027809 MGI:106100 protein coding gene electron transferring flavoprotein, dehydrogenase
3 gene 79.61054 79.61183 negative MGI_C57BL6J_5611201 Gm37973 ENSEMBL:ENSMUSG00000102370 MGI:5611201 unclassified gene predicted gene, 37973
3 gene 79.62908 79.63282 positive MGI_C57BL6J_1923189 4930579G24Rik NCBI_Gene:75939,ENSEMBL:ENSMUSG00000027811 MGI:1923189 protein coding gene RIKEN cDNA 4930579G24 gene
3 gene 79.64160 79.73795 negative MGI_C57BL6J_2682211 Rxfp1 NCBI_Gene:381489,ENSEMBL:ENSMUSG00000034009 MGI:2682211 protein coding gene relaxin/insulin-like family peptide receptor 1
3 gene 79.67337 79.67688 negative MGI_C57BL6J_5504099 Gm26984 ENSEMBL:ENSMUSG00000098204 MGI:5504099 lncRNA gene predicted gene, 26984
3 gene 79.81256 79.85279 negative MGI_C57BL6J_1917902 Tmem144 NCBI_Gene:70652,ENSEMBL:ENSMUSG00000027956 MGI:1917902 protein coding gene transmembrane protein 144
3 gene 79.83493 79.83504 positive MGI_C57BL6J_5456197 Gm26420 ENSEMBL:ENSMUSG00000077461 MGI:5456197 snRNA gene predicted gene, 26420
3 gene 79.85287 79.85666 positive MGI_C57BL6J_5622958 Gm40073 NCBI_Gene:105244471 MGI:5622958 lncRNA gene predicted gene, 40073
3 gene 79.85929 79.88681 negative MGI_C57BL6J_5595728 Gm36569 NCBI_Gene:102640530,ENSEMBL:ENSMUSG00000102191 MGI:5595728 lncRNA gene predicted gene, 36569
3 gene 79.88447 79.94628 positive MGI_C57BL6J_1915909 Gask1b NCBI_Gene:68659,ENSEMBL:ENSMUSG00000027955 MGI:1915909 protein coding gene golgi associated kinase 1B
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 81.88073 81.88087 positive MGI_C57BL6J_5452308 Gm22531 ENSEMBL:ENSMUSG00000089444 MGI:5452308 snoRNA gene predicted gene, 22531
3 gene 81.91659 81.92467 negative MGI_C57BL6J_3642361 Gm9989 NCBI_Gene:102640985,ENSEMBL:ENSMUSG00000056023 MGI:3642361 lncRNA gene predicted gene 9989
3 gene 81.93260 81.95673 positive MGI_C57BL6J_2139628 Ctso NCBI_Gene:229445,ENSEMBL:ENSMUSG00000028015 MGI:2139628 protein coding gene cathepsin O
3 gene 81.95709 81.97620 negative MGI_C57BL6J_1928486 Tdo2 NCBI_Gene:56720,ENSEMBL:ENSMUSG00000028011 MGI:1928486 protein coding gene tryptophan 2,3-dioxygenase
3 gene 81.98229 82.02123 positive MGI_C57BL6J_1929259 Asic5 NCBI_Gene:58170,ENSEMBL:ENSMUSG00000028008 MGI:1929259 protein coding gene acid-sensing (proton-gated) ion channel family member 5
3 gene 82.03200 82.07471 negative MGI_C57BL6J_1860604 Gucy1b1 NCBI_Gene:54195,ENSEMBL:ENSMUSG00000028005 MGI:1860604 protein coding gene guanylate cyclase 1, soluble, beta 1
3 gene 82.09243 82.14588 negative MGI_C57BL6J_1926562 Gucy1a1 NCBI_Gene:60596,ENSEMBL:ENSMUSG00000033910 MGI:1926562 protein coding gene guanylate cyclase 1, soluble, alpha 1
3 gene 82.10625 82.10631 negative MGI_C57BL6J_5531411 Mir7010 miRBase:MI0022859,NCBI_Gene:102466991,ENSEMBL:ENSMUSG00000098712 MGI:5531411 miRNA gene microRNA 7010
3 gene 82.14640 82.23680 negative MGI_C57BL6J_5589080 Gm29921 NCBI_Gene:102631626 MGI:5589080 lncRNA gene predicted gene, 29921
3 gene 82.35803 82.39527 positive MGI_C57BL6J_2442208 Map9 NCBI_Gene:213582,ENSEMBL:ENSMUSG00000033900 MGI:2442208 protein coding gene microtubule-associated protein 9
3 gene 82.53838 82.54899 negative MGI_C57BL6J_108418 Npy2r NCBI_Gene:18167,ENSEMBL:ENSMUSG00000028004 MGI:108418 protein coding gene neuropeptide Y receptor Y2
3 pseudogene 82.57740 82.57809 positive MGI_C57BL6J_5594482 Gm35323 NCBI_Gene:102638861,ENSEMBL:ENSMUSG00000102514 MGI:5594482 pseudogene predicted gene, 35323
3 gene 82.66038 82.66490 negative MGI_C57BL6J_5589158 Gm29999 NCBI_Gene:102631733,ENSEMBL:ENSMUSG00000102629 MGI:5589158 lncRNA gene predicted gene, 29999
3 pseudogene 82.67199 82.67257 negative MGI_C57BL6J_5663484 Gm43347 ENSEMBL:ENSMUSG00000104772 MGI:5663484 pseudogene predicted gene 43347
3 gene 82.75452 82.75986 positive MGI_C57BL6J_5589202 Gm30043 ENSEMBL:ENSMUSG00000104898 MGI:5589202 lncRNA gene predicted gene, 30043
3 gene 82.79366 82.79390 negative MGI_C57BL6J_5451815 Gm22038 ENSEMBL:ENSMUSG00000087902 MGI:5451815 unclassified non-coding RNA gene predicted gene, 22038
3 gene 82.79497 82.81223 negative MGI_C57BL6J_5663485 Gm43348 ENSEMBL:ENSMUSG00000105034 MGI:5663485 lncRNA gene predicted gene 43348
3 gene 82.83652 82.87648 negative MGI_C57BL6J_3645057 Rbm46 NCBI_Gene:633285,ENSEMBL:ENSMUSG00000033882 MGI:3645057 protein coding gene RNA binding motif protein 46
3 gene 82.87671 82.94364 positive MGI_C57BL6J_1925462 Rbm46os NCBI_Gene:78212,ENSEMBL:ENSMUSG00000086273 MGI:1925462 antisense lncRNA gene RNA binding motif protein 46, opposite strand
3 gene 82.89258 82.90397 negative MGI_C57BL6J_1891259 Lrat NCBI_Gene:79235,ENSEMBL:ENSMUSG00000028003 MGI:1891259 protein coding gene lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)
3 gene 82.92666 83.00849 negative MGI_C57BL6J_5589256 Gm30097 NCBI_Gene:102631873,ENSEMBL:ENSMUSG00000102595 MGI:5589256 lncRNA gene predicted gene, 30097
3 gene 83.00772 83.01506 positive MGI_C57BL6J_95526 Fgg NCBI_Gene:99571,ENSEMBL:ENSMUSG00000033860 MGI:95526 protein coding gene fibrinogen gamma chain
3 gene 83.02608 83.03363 positive MGI_C57BL6J_1316726 Fga NCBI_Gene:14161,ENSEMBL:ENSMUSG00000028001 MGI:1316726 protein coding gene fibrinogen alpha chain
3 gene 83.03708 83.03897 negative MGI_C57BL6J_5622960 Gm40075 NCBI_Gene:105244473 MGI:5622960 lncRNA gene predicted gene, 40075
3 gene 83.04014 83.04986 negative MGI_C57BL6J_99501 Fgb NCBI_Gene:110135,ENSEMBL:ENSMUSG00000033831 MGI:99501 protein coding gene fibrinogen beta chain
3 gene 83.05552 83.07236 positive MGI_C57BL6J_1858197 Plrg1 NCBI_Gene:53317,ENSEMBL:ENSMUSG00000027998 MGI:1858197 protein coding gene pleiotropic regulator 1
3 gene 83.12528 83.12925 negative MGI_C57BL6J_3642896 Gm10710 NCBI_Gene:100038599,ENSEMBL:ENSMUSG00000074517 MGI:3642896 lncRNA gene predicted gene 10710
3 gene 83.12795 83.35721 positive MGI_C57BL6J_2685263 Dchs2 NCBI_Gene:100534287,ENSEMBL:ENSMUSG00000102692 MGI:2685263 protein coding gene dachsous cadherin related 2
3 gene 83.40340 83.40579 positive MGI_C57BL6J_5611324 Gm38096 ENSEMBL:ENSMUSG00000103459 MGI:5611324 lncRNA gene predicted gene, 38096
3 gene 83.55536 83.57412 negative MGI_C57BL6J_1916710 1700028M03Rik NCBI_Gene:69460,ENSEMBL:ENSMUSG00000101334 MGI:1916710 lncRNA gene RIKEN cDNA 1700028M03 gene
3 gene 83.59633 83.60109 negative MGI_C57BL6J_5622961 Gm40076 NCBI_Gene:105244474 MGI:5622961 lncRNA gene predicted gene, 40076
3 gene 83.63458 83.63487 negative MGI_C57BL6J_5452119 Gm22342 ENSEMBL:ENSMUSG00000084596 MGI:5452119 unclassified non-coding RNA gene predicted gene, 22342
3 pseudogene 83.68668 83.68727 positive MGI_C57BL6J_3781837 Rpl28-ps2 NCBI_Gene:100042091,ENSEMBL:ENSMUSG00000102137 MGI:3781837 pseudogene ribosomal protein L28, pseudogene 2
3 gene 83.70225 83.70236 positive MGI_C57BL6J_5454361 Gm24584 ENSEMBL:ENSMUSG00000088597 MGI:5454361 snRNA gene predicted gene, 24584
3 gene 83.71936 83.72737 negative MGI_C57BL6J_5589452 Gm30293 NCBI_Gene:102632140 MGI:5589452 lncRNA gene predicted gene, 30293
3 gene 83.76616 83.77432 positive MGI_C57BL6J_108078 Sfrp2 NCBI_Gene:20319,ENSEMBL:ENSMUSG00000027996 MGI:108078 protein coding gene secreted frizzled-related protein 2
3 gene 83.77385 83.78996 negative MGI_C57BL6J_5477265 Gm26771 ENSEMBL:ENSMUSG00000097250 MGI:5477265 lncRNA gene predicted gene, 26771
3 pseudogene 83.78973 83.83222 positive MGI_C57BL6J_3646388 Gm7115 NCBI_Gene:633522,ENSEMBL:ENSMUSG00000104082 MGI:3646388 pseudogene predicted gene 7115
3 gene 83.83627 83.84182 negative MGI_C57BL6J_1346060 Tlr2 NCBI_Gene:24088,ENSEMBL:ENSMUSG00000027995 MGI:1346060 protein coding gene toll-like receptor 2
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 83.89766 84.04018 negative MGI_C57BL6J_2443399 Tmem131l NCBI_Gene:229473,ENSEMBL:ENSMUSG00000033767 MGI:2443399 protein coding gene transmembrane 131 like
3 gene 84.02844 84.02928 positive MGI_C57BL6J_1922302 4930509B17Rik NA NA unclassified gene RIKEN cDNA 4930509B17 gene
3 gene 84.04022 84.05210 positive MGI_C57BL6J_5589511 Gm30352 NCBI_Gene:102632212 MGI:5589511 lncRNA gene predicted gene, 30352
3 gene 84.05897 84.06345 negative MGI_C57BL6J_5610209 Gm36981 ENSEMBL:ENSMUSG00000103261 MGI:5610209 unclassified non-coding RNA gene predicted gene, 36981
3 gene 84.06174 84.06277 positive MGI_C57BL6J_5589617 Gm30458 NCBI_Gene:102632366 MGI:5589617 lncRNA gene predicted gene, 30458
3 gene 84.08793 84.15579 negative MGI_C57BL6J_1924165 Mnd1 NCBI_Gene:76915,ENSEMBL:ENSMUSG00000033752 MGI:1924165 protein coding gene meiotic nuclear divisions 1
3 gene 84.16044 84.30688 negative MGI_C57BL6J_1933163 Trim2 NCBI_Gene:80890,ENSEMBL:ENSMUSG00000027993 MGI:1933163 protein coding gene tripartite motif-containing 2
3 gene 84.17410 84.17519 positive MGI_C57BL6J_3648757 Gm6525 NCBI_Gene:624713,ENSEMBL:ENSMUSG00000104043 MGI:3648757 protein coding gene predicted pseudogene 6525
3 gene 84.22869 84.24704 positive MGI_C57BL6J_5622963 Gm40078 NCBI_Gene:105244477 MGI:5622963 lncRNA gene predicted gene, 40078
3 gene 84.22901 84.22908 negative MGI_C57BL6J_4413878 n-TGgcc9 NCBI_Gene:102467313 MGI:4413878 tRNA gene nuclear encoded tRNA glycine 9 (anticodon GCC)
3 gene 84.30298 84.30542 negative MGI_C57BL6J_2443303 C630001G18Rik NA NA unclassified gene RIKEN cDNA C630001G18 gene
3 gene 84.34938 84.37992 negative MGI_C57BL6J_1922559 4930565D16Rik NCBI_Gene:75309,ENSEMBL:ENSMUSG00000104004 MGI:1922559 lncRNA gene RIKEN cDNA 4930565D16 gene
3 gene 84.44219 84.48044 negative MGI_C57BL6J_2684972 Fhdc1 NCBI_Gene:229474,ENSEMBL:ENSMUSG00000041842 MGI:2684972 protein coding gene FH2 domain containing 1
3 gene 84.49609 84.58283 negative MGI_C57BL6J_1277120 Arfip1 NCBI_Gene:99889,ENSEMBL:ENSMUSG00000074513 MGI:1277120 protein coding gene ADP-ribosylation factor interacting protein 1
3 gene 84.49643 85.88752 negative MGI_C57BL6J_5610468 Gm37240 ENSEMBL:ENSMUSG00000102805 MGI:5610468 protein coding gene predicted gene, 37240
3 pseudogene 84.55266 84.55348 negative MGI_C57BL6J_3645282 Gm8813 NCBI_Gene:667788,ENSEMBL:ENSMUSG00000085625 MGI:3645282 pseudogene predicted gene 8813
3 pseudogene 84.55689 84.55779 negative MGI_C57BL6J_5611469 Gm38241 ENSEMBL:ENSMUSG00000103741 MGI:5611469 pseudogene predicted gene, 38241
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 86.22390 86.78269 positive MGI_C57BL6J_1933162 Lrba NCBI_Gene:80877,ENSEMBL:ENSMUSG00000028080 MGI:1933162 protein coding gene LPS-responsive beige-like anchor
3 pseudogene 86.67177 86.67224 negative MGI_C57BL6J_3781961 Gm3788 NCBI_Gene:100042319,ENSEMBL:ENSMUSG00000094392 MGI:3781961 pseudogene predicted gene 3788
3 gene 86.76807 86.77865 negative MGI_C57BL6J_5611104 Gm37876 ENSEMBL:ENSMUSG00000104108 MGI:5611104 lncRNA gene predicted gene, 37876
3 gene 86.78615 86.92088 negative MGI_C57BL6J_1918012 Dclk2 NCBI_Gene:70762,ENSEMBL:ENSMUSG00000028078 MGI:1918012 protein coding gene doublecortin-like kinase 2
3 gene 86.82565 86.82710 negative MGI_C57BL6J_5826447 Gm46810 NCBI_Gene:108168877 MGI:5826447 lncRNA gene predicted gene, 46810
3 pseudogene 86.86449 86.86532 positive MGI_C57BL6J_5610253 Gm37025 ENSEMBL:ENSMUSG00000104074 MGI:5610253 pseudogene predicted gene, 37025
3 gene 86.93074 86.93090 positive MGI_C57BL6J_5453153 Gm23376 ENSEMBL:ENSMUSG00000064872 MGI:5453153 snRNA gene predicted gene, 23376
3 pseudogene 86.93337 86.93366 negative MGI_C57BL6J_5610435 Gm37207 ENSEMBL:ENSMUSG00000103650 MGI:5610435 pseudogene predicted gene, 37207
3 pseudogene 86.98655 86.98978 positive MGI_C57BL6J_107675 Cd1d2 NCBI_Gene:12480,ENSEMBL:ENSMUSG00000041750 MGI:107675 polymorphic pseudogene CD1d2 antigen
3 gene 86.99583 86.99944 negative MGI_C57BL6J_107674 Cd1d1 NCBI_Gene:12479,ENSEMBL:ENSMUSG00000028076 MGI:107674 protein coding gene CD1d1 antigen
3 pseudogene 87.02286 87.02396 negative MGI_C57BL6J_3644826 Gm8869 NCBI_Gene:667897,ENSEMBL:ENSMUSG00000104265 MGI:3644826 pseudogene predicted gene 8869
3 pseudogene 87.05436 87.05500 positive MGI_C57BL6J_5010588 Gm18403 NCBI_Gene:100417112,ENSEMBL:ENSMUSG00000103913 MGI:5010588 pseudogene predicted gene, 18403
3 pseudogene 87.06012 87.06043 positive MGI_C57BL6J_5610803 Gm37575 ENSEMBL:ENSMUSG00000102394 MGI:5610803 pseudogene predicted gene, 37575
3 gene 87.06689 87.06702 positive MGI_C57BL6J_5454249 Gm24472 ENSEMBL:ENSMUSG00000077672 MGI:5454249 snoRNA gene predicted gene, 24472
3 gene 87.07859 87.17475 negative MGI_C57BL6J_1891396 Kirrel NCBI_Gene:170643,ENSEMBL:ENSMUSG00000041734 MGI:1891396 protein coding gene kirre like nephrin family adhesion molecule 1
3 gene 87.11060 87.11222 negative MGI_C57BL6J_5011567 Gm19382 NA NA unclassified gene predicted gene%2c 19382
3 gene 87.15769 87.16245 positive MGI_C57BL6J_5611083 Gm37855 ENSEMBL:ENSMUSG00000102893 MGI:5611083 lncRNA gene predicted gene, 37855
3 pseudogene 87.20734 87.20803 negative MGI_C57BL6J_3708678 Gm10705 NCBI_Gene:100042355,ENSEMBL:ENSMUSG00000074506 MGI:3708678 pseudogene predicted gene 10705
3 gene 87.25076 87.26377 negative MGI_C57BL6J_1933397 Fcrls NCBI_Gene:80891,ENSEMBL:ENSMUSG00000015852 MGI:1933397 protein coding gene Fc receptor-like S, scavenger receptor
3 gene 87.29034 87.30091 positive MGI_C57BL6J_5591038 Gm31879 NCBI_Gene:102634249 MGI:5591038 lncRNA gene predicted gene, 31879
3 gene 87.35400 87.37760 negative MGI_C57BL6J_5591099 Gm31940 NCBI_Gene:102634332 MGI:5591099 lncRNA gene predicted gene, 31940
3 gene 87.35788 87.37107 positive MGI_C57BL6J_1334419 Cd5l NCBI_Gene:11801,ENSEMBL:ENSMUSG00000015854 MGI:1334419 protein coding gene CD5 antigen-like
3 gene 87.37634 87.40397 positive MGI_C57BL6J_2442862 Fcrl1 NCBI_Gene:229499,ENSEMBL:ENSMUSG00000059994 MGI:2442862 protein coding gene Fc receptor-like 1
3 gene 87.41141 87.41479 positive MGI_C57BL6J_5622969 Gm40084 NCBI_Gene:105244483 MGI:5622969 lncRNA gene predicted gene, 40084
3 gene 87.43577 87.50068 positive MGI_C57BL6J_3053558 Fcrl5 NCBI_Gene:329693,ENSEMBL:ENSMUSG00000048031 MGI:3053558 protein coding gene Fc receptor-like 5
3 gene 87.48702 87.51219 negative MGI_C57BL6J_5622970 Gm40085 NCBI_Gene:105244484 MGI:5622970 lncRNA gene predicted gene, 40085
3 gene 87.50853 87.51318 positive MGI_C57BL6J_5591157 Gm31998 NCBI_Gene:102634410 MGI:5591157 lncRNA gene predicted gene, 31998
3 gene 87.52541 87.54016 positive MGI_C57BL6J_1350926 Etv3 NCBI_Gene:27049,ENSEMBL:ENSMUSG00000003382 MGI:1350926 protein coding gene ets variant 3
3 gene 87.54988 87.56110 positive MGI_C57BL6J_3646099 Etv3l NCBI_Gene:546801,ENSEMBL:ENSMUSG00000104058 MGI:3646099 protein coding gene ets variant 3-like
3 gene 87.58267 87.58279 negative MGI_C57BL6J_5454944 Gm25167 ENSEMBL:ENSMUSG00000077376 MGI:5454944 snoRNA gene predicted gene, 25167
3 gene 87.61740 87.61750 positive MGI_C57BL6J_5453886 Gm24109 ENSEMBL:ENSMUSG00000093230 MGI:5453886 miRNA gene predicted gene, 24109
3 gene 87.61755 87.73803 positive MGI_C57BL6J_2441869 Arhgef11 NCBI_Gene:213498,ENSEMBL:ENSMUSG00000041977 MGI:2441869 protein coding gene Rho guanine nucleotide exchange factor (GEF) 11
3 pseudogene 87.64843 87.64867 negative MGI_C57BL6J_5011427 Gm19242 NCBI_Gene:100462734 MGI:5011427 pseudogene predicted gene, 19242
3 gene 87.67964 87.68003 negative MGI_C57BL6J_3644100 Gm6570 NCBI_Gene:625281 MGI:3644100 protein coding gene predicted gene 6570
3 gene 87.73692 87.74863 negative MGI_C57BL6J_1921735 Lrrc71 NCBI_Gene:74485,ENSEMBL:ENSMUSG00000023084 MGI:1921735 protein coding gene leucine rich repeat containing 71
3 gene 87.74789 87.82431 negative MGI_C57BL6J_1920432 Pear1 NCBI_Gene:73182,ENSEMBL:ENSMUSG00000028073 MGI:1920432 protein coding gene platelet endothelial aggregation receptor 1
3 gene 87.77824 87.79524 negative MGI_C57BL6J_97383 Ntrk1 NCBI_Gene:18211,ENSEMBL:ENSMUSG00000028072 MGI:97383 protein coding gene neurotrophic tyrosine kinase, receptor, type 1
3 gene 87.79691 87.81610 positive MGI_C57BL6J_1346037 Insrr NCBI_Gene:23920,ENSEMBL:ENSMUSG00000005640 MGI:1346037 protein coding gene insulin receptor-related receptor
3 gene 87.82054 87.82307 positive MGI_C57BL6J_5622971 Gm40086 NCBI_Gene:105244485 MGI:5622971 lncRNA gene predicted gene, 40086
3 gene 87.82475 87.83127 positive MGI_C57BL6J_5591629 Gm32470 NCBI_Gene:105244486 MGI:5591629 lncRNA gene predicted gene, 32470
3 gene 87.84676 87.85572 positive MGI_C57BL6J_1351596 Sh2d2a NCBI_Gene:27371,ENSEMBL:ENSMUSG00000028071 MGI:1351596 protein coding gene SH2 domain containing 2A
3 gene 87.85890 87.88561 negative MGI_C57BL6J_2137738 Prcc NCBI_Gene:94315,ENSEMBL:ENSMUSG00000004895 MGI:2137738 protein coding gene papillary renal cell carcinoma (translocation-associated)
3 gene 87.90632 87.91613 positive MGI_C57BL6J_1194494 Hdgf NCBI_Gene:15191,ENSEMBL:ENSMUSG00000004897 MGI:1194494 protein coding gene heparin binding growth factor
3 gene 87.91813 87.92367 positive MGI_C57BL6J_1914957 Mrpl24 NCBI_Gene:67707,ENSEMBL:ENSMUSG00000019710 MGI:1914957 protein coding gene mitochondrial ribosomal protein L24
3 gene 87.92260 87.93072 negative MGI_C57BL6J_2387197 Rrnad1 NCBI_Gene:229503,ENSEMBL:ENSMUSG00000004896 MGI:2387197 protein coding gene ribosomal RNA adenine dimethylase domain containing 1
3 gene 87.93031 87.94069 positive MGI_C57BL6J_2140076 Isg20l2 NCBI_Gene:229504,ENSEMBL:ENSMUSG00000048039 MGI:2140076 protein coding gene interferon stimulated exonuclease gene 20-like 2
3 gene 87.94867 87.95338 positive MGI_C57BL6J_88491 Crabp2 NCBI_Gene:12904,ENSEMBL:ENSMUSG00000004885 MGI:88491 protein coding gene cellular retinoic acid binding protein II
3 gene 87.96008 87.96573 positive MGI_C57BL6J_5591677 Gm32518 NCBI_Gene:102635095 MGI:5591677 lncRNA gene predicted gene, 32518
3 pseudogene 87.96676 87.96869 positive MGI_C57BL6J_3781920 Gm3745 NCBI_Gene:100042242,ENSEMBL:ENSMUSG00000103792 MGI:3781920 pseudogene predicted gene 3745
3 gene 87.97108 87.98045 positive MGI_C57BL6J_101784 Nes NCBI_Gene:18008,ENSEMBL:ENSMUSG00000004891 MGI:101784 protein coding gene nestin
3 gene 87.98753 88.00089 negative MGI_C57BL6J_1096385 Bcan NCBI_Gene:12032,ENSEMBL:ENSMUSG00000004892 MGI:1096385 protein coding gene brevican
3 gene 88.02056 88.02758 negative MGI_C57BL6J_2137300 Hapln2 NCBI_Gene:73940,ENSEMBL:ENSMUSG00000004894 MGI:2137300 protein coding gene hyaluronan and proteoglycan link protein 2
3 gene 88.03078 88.03621 positive MGI_C57BL6J_5011624 Gm19439 NCBI_Gene:105244487,ENSEMBL:ENSMUSG00000105843 MGI:5011624 lncRNA gene predicted gene, 19439
3 gene 88.04311 88.05599 positive MGI_C57BL6J_1913864 Gpatch4 NCBI_Gene:66614,ENSEMBL:ENSMUSG00000028069 MGI:1913864 protein coding gene G patch domain containing 4
3 gene 88.05652 88.05854 negative MGI_C57BL6J_2180167 Naxe NCBI_Gene:246703,ENSEMBL:ENSMUSG00000028070 MGI:2180167 protein coding gene NAD(P)HX epimerase
3 gene 88.06941 88.07830 negative MGI_C57BL6J_2443841 Ttc24 NCBI_Gene:214191,ENSEMBL:ENSMUSG00000051036 MGI:2443841 protein coding gene tetratricopeptide repeat domain 24
3 gene 88.08197 88.12105 positive MGI_C57BL6J_3028642 Iqgap3 NCBI_Gene:404710,ENSEMBL:ENSMUSG00000028068 MGI:3028642 protein coding gene IQ motif containing GTPase activating protein 3
3 gene 88.13352 88.13842 positive MGI_C57BL6J_5622972 Gm40087 NCBI_Gene:105244489 MGI:5622972 lncRNA gene predicted gene, 40087
3 gene 88.14197 88.17209 positive MGI_C57BL6J_99533 Mef2d NCBI_Gene:17261,ENSEMBL:ENSMUSG00000001419 MGI:99533 protein coding gene myocyte enhancer factor 2D
3 gene 88.17156 88.17779 negative MGI_C57BL6J_1923892 1700113A16Rik NCBI_Gene:76642,ENSEMBL:ENSMUSG00000096935 MGI:1923892 lncRNA gene RIKEN cDNA 1700113A16 gene
3 gene 88.19910 88.20459 negative MGI_C57BL6J_2139818 AI849053 ENSEMBL:ENSMUSG00000097280 MGI:2139818 lncRNA gene expressed sequence AI849053
3 gene 88.20020 88.20348 positive MGI_C57BL6J_2139951 AW047730 NCBI_Gene:99870,ENSEMBL:ENSMUSG00000097428 MGI:2139951 lncRNA gene expressed sequence AW047730
3 gene 88.20577 88.22996 positive MGI_C57BL6J_3781938 Gm3764 NCBI_Gene:100042277,ENSEMBL:ENSMUSG00000097156 MGI:3781938 lncRNA gene predicted gene 3764
3 gene 88.21517 88.21526 positive MGI_C57BL6J_4834307 Mir3093 miRBase:MI0014086,NCBI_Gene:100526540,ENSEMBL:ENSMUSG00000092988 MGI:4834307 miRNA gene microRNA 3093
3 gene 88.21559 88.21570 negative MGI_C57BL6J_5455418 Gm25641 ENSEMBL:ENSMUSG00000092876 MGI:5455418 miRNA gene predicted gene, 25641
3 gene 88.21560 88.21569 positive MGI_C57BL6J_2676911 Mir9-1 miRBase:MI0000720,NCBI_Gene:387133,ENSEMBL:ENSMUSG00000106493 MGI:2676911 miRNA gene microRNA 9-1
3 gene 88.22741 88.23234 negative MGI_C57BL6J_1918213 4931402H11Rik NA NA unclassified non-coding RNA gene RIKEN cDNA 4931402H11 gene
3 gene 88.24287 88.25474 negative MGI_C57BL6J_1927379 Rhbg NCBI_Gene:58176,ENSEMBL:ENSMUSG00000104445 MGI:1927379 protein coding gene Rhesus blood group-associated B glycoprotein
3 gene 88.24338 88.28721 negative MGI_C57BL6J_5613632 Gm38392 ENSEMBL:ENSMUSG00000103766 MGI:5613632 protein coding gene predicted gene, 38392
3 gene 88.28275 88.29701 negative MGI_C57BL6J_1924177 Tsacc NCBI_Gene:76927,ENSEMBL:ENSMUSG00000010538 MGI:1924177 protein coding gene TSSK6 activating co-chaperone
3 pseudogene 88.28461 88.28475 negative MGI_C57BL6J_5610344 Gm37116 ENSEMBL:ENSMUSG00000103574 MGI:5610344 pseudogene predicted gene, 37116
3 gene 88.29712 88.32177 positive MGI_C57BL6J_104708 Cct3 NCBI_Gene:12462,ENSEMBL:ENSMUSG00000001416 MGI:104708 protein coding gene chaperonin containing Tcp1, subunit 3 (gamma)
3 gene 88.32502 88.33131 positive MGI_C57BL6J_1913318 Glmp NCBI_Gene:56700,ENSEMBL:ENSMUSG00000001418 MGI:1913318 protein coding gene glycosylated lysosomal membrane protein
3 gene 88.32865 88.33615 negative MGI_C57BL6J_1919163 Tmem79 NCBI_Gene:71913,ENSEMBL:ENSMUSG00000001420 MGI:1919163 protein coding gene transmembrane protein 79
3 gene 88.33474 88.33618 negative MGI_C57BL6J_3040675 BC038331 NA NA unclassified gene cDNA sequence BC038331
3 gene 88.33626 88.36234 positive MGI_C57BL6J_2447364 Smg5 NCBI_Gene:229512,ENSEMBL:ENSMUSG00000001415 MGI:2447364 protein coding gene Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
3 gene 88.36407 88.36854 positive MGI_C57BL6J_1916207 Paqr6 NCBI_Gene:68957,ENSEMBL:ENSMUSG00000041423 MGI:1916207 protein coding gene progestin and adipoQ receptor family member VI
3 gene 88.36862 88.37274 negative MGI_C57BL6J_88155 Bglap3 NCBI_Gene:12095,ENSEMBL:ENSMUSG00000074489 MGI:88155 protein coding gene bone gamma-carboxyglutamate protein 3
3 pseudogene 88.37581 88.38293 positive MGI_C57BL6J_5439425 Gm21956 NCBI_Gene:101055651,NCBI_Gene:108168878,ENSEMBL:ENSMUSG00000096792 MGI:5439425 pseudogene predicted gene, 21956
3 gene 88.37774 88.37870 negative MGI_C57BL6J_88157 Bglap2 NCBI_Gene:12097,ENSEMBL:ENSMUSG00000074486 MGI:88157 protein coding gene bone gamma-carboxyglutamate protein 2
3 pseudogene 88.38163 88.38293 positive MGI_C57BL6J_3779634 Gm6821 NCBI_Gene:101055651,ENSEMBL:ENSMUSG00000078691 MGI:3779634 pseudogene predicted gene 6821
3 gene 88.38349 88.38447 negative MGI_C57BL6J_88156 Bglap NCBI_Gene:12096,ENSEMBL:ENSMUSG00000074483 MGI:88156 protein coding gene bone gamma carboxyglutamate protein
3 gene 88.39414 88.41040 negative MGI_C57BL6J_1914287 Pmf1 NCBI_Gene:67037,ENSEMBL:ENSMUSG00000028066 MGI:1914287 protein coding gene polyamine-modulated factor 1
3 gene 88.41049 88.42514 negative MGI_C57BL6J_2444391 Slc25a44 NCBI_Gene:229517,ENSEMBL:ENSMUSG00000050144 MGI:2444391 protein coding gene solute carrier family 25, member 44
3 gene 88.42508 88.42867 positive MGI_C57BL6J_5592672 Gm33513 NCBI_Gene:102636453 MGI:5592672 lncRNA gene predicted gene, 33513
3 pseudogene 88.42894 88.42939 positive MGI_C57BL6J_5662951 Gm42814 ENSEMBL:ENSMUSG00000106568 MGI:5662951 pseudogene predicted gene 42814
3 gene 88.43596 88.46118 negative MGI_C57BL6J_107560 Sema4a NCBI_Gene:20351,ENSEMBL:ENSMUSG00000028064 MGI:107560 protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
3 gene 88.44088 88.44095 negative MGI_C57BL6J_5531059 Mir7011 miRBase:MI0022860,NCBI_Gene:102465611,ENSEMBL:ENSMUSG00000098655 MGI:5531059 miRNA gene microRNA 7011
3 gene 88.46209 88.46613 negative MGI_C57BL6J_5622974 Gm40089 NCBI_Gene:105244492 MGI:5622974 lncRNA gene predicted gene, 40089
3 pseudogene 88.47454 88.47535 positive MGI_C57BL6J_3643641 Gm5979 NCBI_Gene:546802,ENSEMBL:ENSMUSG00000103304 MGI:3643641 pseudogene predicted gene 5979
3 gene 88.48015 88.50996 negative MGI_C57BL6J_96794 Lmna NCBI_Gene:16905,ENSEMBL:ENSMUSG00000028063 MGI:96794 protein coding gene lamin A
3 gene 88.52607 88.52736 negative MGI_C57BL6J_5610812 Gm37584 ENSEMBL:ENSMUSG00000103115 MGI:5610812 lncRNA gene predicted gene, 37584
3 gene 88.52927 88.53179 negative MGI_C57BL6J_5621503 Gm38618 NCBI_Gene:102642612 MGI:5621503 lncRNA gene predicted gene, 38618
3 gene 88.53239 88.54140 positive MGI_C57BL6J_1919890 Mex3a NCBI_Gene:72640,ENSEMBL:ENSMUSG00000074480 MGI:1919890 protein coding gene mex3 RNA binding family member A
3 gene 88.53630 88.53638 negative MGI_C57BL6J_3811408 Mir1905 miRBase:MI0008315,NCBI_Gene:100316808,ENSEMBL:ENSMUSG00000084728 MGI:3811408 miRNA gene microRNA 1905
3 gene 88.54203 88.54830 negative MGI_C57BL6J_1858203 Rab25 NCBI_Gene:53868,ENSEMBL:ENSMUSG00000008601 MGI:1858203 protein coding gene RAB25, member RAS oncogene family
3 gene 88.54982 88.55307 negative MGI_C57BL6J_1932697 Lamtor2 NCBI_Gene:83409,ENSEMBL:ENSMUSG00000028062 MGI:1932697 protein coding gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
3 gene 88.55368 88.56973 positive MGI_C57BL6J_2150152 Ubqln4 NCBI_Gene:94232,ENSEMBL:ENSMUSG00000008604 MGI:2150152 protein coding gene ubiquilin 4
3 gene 88.57588 88.58842 positive MGI_C57BL6J_1913506 Ssr2 NCBI_Gene:66256,ENSEMBL:ENSMUSG00000041355 MGI:1913506 protein coding gene signal sequence receptor, beta
3 pseudogene 88.57624 88.57720 negative MGI_C57BL6J_3642446 Rtraf-ps NCBI_Gene:545536,ENSEMBL:ENSMUSG00000074479 MGI:3642446 pseudogene RNA transcription, translation and transport factor, pseudogene
3 gene 88.59311 88.64953 positive MGI_C57BL6J_103264 Arhgef2 NCBI_Gene:16800,ENSEMBL:ENSMUSG00000028059 MGI:103264 protein coding gene rho/rac guanine nucleotide exchange factor (GEF) 2
3 gene 88.60667 88.60722 negative MGI_C57BL6J_5622975 Gm40090 NCBI_Gene:105244493 MGI:5622975 lncRNA gene predicted gene, 40090
3 gene 88.61646 88.62111 negative MGI_C57BL6J_5313099 Gm20652 NCBI_Gene:102636610,ENSEMBL:ENSMUSG00000093390 MGI:5313099 lncRNA gene predicted gene 20652
3 gene 88.65190 88.65314 negative MGI_C57BL6J_2182926 Rxfp4 NCBI_Gene:242093,ENSEMBL:ENSMUSG00000049741 MGI:2182926 protein coding gene relaxin family peptide receptor 4
3 gene 88.68502 88.68640 negative MGI_C57BL6J_5663851 Gm43714 ENSEMBL:ENSMUSG00000105512 MGI:5663851 lncRNA gene predicted gene 43714
3 gene 88.68578 88.71293 positive MGI_C57BL6J_1921450 Khdc4 NCBI_Gene:74200,ENSEMBL:ENSMUSG00000028060 MGI:1921450 protein coding gene KH domain containing 4, pre-mRNA splicing factor
3 gene 88.69393 88.69406 positive MGI_C57BL6J_5455597 Gm25820 ENSEMBL:ENSMUSG00000105288,ENSEMBL:ENSMUSG00000105448 MGI:5455597 snoRNA gene predicted gene, 25820
3 gene 88.70716 88.70729 positive MGI_C57BL6J_5455722 Gm25945 ENSEMBL:ENSMUSG00000084433 MGI:5455722 snoRNA gene predicted gene, 25945
3 gene 88.71684 88.73105 positive MGI_C57BL6J_108053 Rit1 NCBI_Gene:19769,ENSEMBL:ENSMUSG00000028057 MGI:108053 protein coding gene Ras-like without CAAX 1
3 gene 88.72209 88.72267 positive MGI_C57BL6J_4937973 Gm17146 ENSEMBL:ENSMUSG00000091881 MGI:4937973 lncRNA gene predicted gene 17146
3 gene 88.73875 88.73969 negative MGI_C57BL6J_3641796 Gm10253 ENSEMBL:ENSMUSG00000104333 MGI:3641796 unclassified gene predicted gene 10253
3 gene 88.74470 88.77516 negative MGI_C57BL6J_1859547 Syt11 NCBI_Gene:229521,ENSEMBL:ENSMUSG00000068923 MGI:1859547 protein coding gene synaptotagmin XI
3 pseudogene 88.77522 88.82937 positive MGI_C57BL6J_1923272 5830417I10Rik NCBI_Gene:100302730,ENSEMBL:ENSMUSG00000078684 MGI:1923272 pseudogene RIKEN cDNA 5830417I10 gene
3 gene 88.78294 88.83255 negative MGI_C57BL6J_2442808 1500004A13Rik NCBI_Gene:319830,ENSEMBL:ENSMUSG00000098912 MGI:2442808 lncRNA gene RIKEN cDNA 1500004A13 gene
3 gene 88.83097 88.91010 positive MGI_C57BL6J_1917579 Gon4l NCBI_Gene:76022,ENSEMBL:ENSMUSG00000054199 MGI:1917579 protein coding gene gon-4-like (C.elegans)
3 gene 88.84503 88.90000 negative MGI_C57BL6J_5663850 Gm43713 ENSEMBL:ENSMUSG00000106218 MGI:5663850 lncRNA gene predicted gene 43713
3 gene 88.86292 88.86308 positive MGI_C57BL6J_5452831 Gm23054 ENSEMBL:ENSMUSG00000064738 MGI:5452831 snRNA gene predicted gene, 23054
3 gene 88.88092 88.89994 negative MGI_C57BL6J_5622976 Gm40091 NCBI_Gene:105244494 MGI:5622976 lncRNA gene predicted gene, 40091
3 gene 88.90511 88.91400 negative MGI_C57BL6J_2385175 Msto1 NCBI_Gene:229524,ENSEMBL:ENSMUSG00000068922 MGI:2385175 protein coding gene misato 1, mitochondrial distribution and morphology regulator
3 gene 88.90651 88.90663 positive MGI_C57BL6J_4422062 n-R5s197 ENSEMBL:ENSMUSG00000065236 MGI:4422062 rRNA gene nuclear encoded rRNA 5S 197
3 gene 88.92080 88.95120 negative MGI_C57BL6J_1929538 Dap3 NCBI_Gene:65111,ENSEMBL:ENSMUSG00000068921 MGI:1929538 protein coding gene death associated protein 3
3 gene 88.95049 89.07937 positive MGI_C57BL6J_2183158 Ash1l NCBI_Gene:192195,ENSEMBL:ENSMUSG00000028053 MGI:2183158 protein coding gene ASH1 like histone lysine methyltransferase
3 gene 88.97062 88.97073 negative MGI_C57BL6J_5456242 Gm26465 ENSEMBL:ENSMUSG00000095712 MGI:5456242 snRNA gene predicted gene, 26465
3 gene 89.04900 89.04913 negative MGI_C57BL6J_5454180 Gm24403 ENSEMBL:ENSMUSG00000077804 MGI:5454180 snoRNA gene predicted gene, 24403
3 gene 89.08194 89.10110 negative MGI_C57BL6J_5663875 Gm43738 ENSEMBL:ENSMUSG00000105204 MGI:5663875 protein coding gene predicted gene 43738
3 gene 89.08397 89.09336 negative MGI_C57BL6J_1919546 Rusc1 NCBI_Gene:72296,ENSEMBL:ENSMUSG00000041263 MGI:1919546 protein coding gene RUN and SH3 domain containing 1
3 gene 89.09359 89.10197 negative MGI_C57BL6J_104888 Fdps NCBI_Gene:110196,ENSEMBL:ENSMUSG00000059743 MGI:104888 protein coding gene farnesyl diphosphate synthetase
3 gene 89.09791 89.09801 negative MGI_C57BL6J_5452712 Gm22935 ENSEMBL:ENSMUSG00000077148 MGI:5452712 snRNA gene predicted gene, 22935
3 pseudogene 89.11669 89.11702 positive MGI_C57BL6J_5588863 Gm29704 NCBI_Gene:101055641,ENSEMBL:ENSMUSG00000105654 MGI:5588863 pseudogene predicted gene, 29704
3 gene 89.13613 89.14678 positive MGI_C57BL6J_97604 Pklr NCBI_Gene:18770,ENSEMBL:ENSMUSG00000041237 MGI:97604 protein coding gene pyruvate kinase liver and red blood cell
3 gene 89.14607 89.16023 negative MGI_C57BL6J_1298211 Hcn3 NCBI_Gene:15168,ENSEMBL:ENSMUSG00000028051 MGI:1298211 protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 3
3 gene 89.16479 89.17709 positive MGI_C57BL6J_1098669 Clk2 NCBI_Gene:12748,ENSEMBL:ENSMUSG00000068917 MGI:1098669 protein coding gene CDC-like kinase 2
3 gene 89.16479 89.18277 positive MGI_C57BL6J_5825564 Gm45927 NCBI_Gene:105943584 MGI:5825564 protein coding gene predicted gene, 45927
3 gene 89.17739 89.18277 positive MGI_C57BL6J_1346346 Scamp3 NCBI_Gene:24045,ENSEMBL:ENSMUSG00000028049 MGI:1346346 protein coding gene secretory carrier membrane protein 3
3 gene 89.18076 89.18410 negative MGI_C57BL6J_3801823 Gm16069 NCBI_Gene:102636781,ENSEMBL:ENSMUSG00000086718 MGI:3801823 lncRNA gene predicted gene 16069
3 gene 89.18314 89.18930 positive MGI_C57BL6J_1915771 Fam189b NCBI_Gene:68521,ENSEMBL:ENSMUSG00000032657 MGI:1915771 protein coding gene family with sequence similarity 189, member B
3 gene 89.20117 89.20127 negative MGI_C57BL6J_5453046 Gm23269 ENSEMBL:ENSMUSG00000094489 MGI:5453046 snRNA gene predicted gene, 23269
3 gene 89.20291 89.20897 positive MGI_C57BL6J_95665 Gba NCBI_Gene:14466,ENSEMBL:ENSMUSG00000028048 MGI:95665 protein coding gene glucosidase, beta, acid
3 gene 89.20908 89.22709 negative MGI_C57BL6J_103025 Mtx1 NCBI_Gene:17827,ENSEMBL:ENSMUSG00000064068 MGI:103025 protein coding gene metaxin 1
3 gene 89.21043 89.21316 positive MGI_C57BL6J_5663874 Gm43737 ENSEMBL:ENSMUSG00000105692 MGI:5663874 unclassified gene predicted gene 43737
3 gene 89.21481 89.22684 positive MGI_C57BL6J_98739 Thbs3 NCBI_Gene:21827,ENSEMBL:ENSMUSG00000028047 MGI:98739 protein coding gene thrombospondin 3
3 gene 89.22712 89.22720 negative MGI_C57BL6J_3718577 Mir92b miRBase:MI0005521,NCBI_Gene:100124470,ENSEMBL:ENSMUSG00000076255 MGI:3718577 miRNA gene microRNA 92b
3 gene 89.22906 89.23338 positive MGI_C57BL6J_97231 Muc1 NCBI_Gene:17829,ENSEMBL:ENSMUSG00000042784 MGI:97231 protein coding gene mucin 1, transmembrane
3 gene 89.23417 89.24631 negative MGI_C57BL6J_2673000 Trim46 NCBI_Gene:360213,ENSEMBL:ENSMUSG00000042766 MGI:2673000 protein coding gene tripartite motif-containing 46
3 gene 89.24597 89.24991 positive MGI_C57BL6J_1913309 Krtcap2 NCBI_Gene:66059,ENSEMBL:ENSMUSG00000042747 MGI:1913309 protein coding gene keratinocyte associated protein 2
3 gene 89.25926 89.26708 positive MGI_C57BL6J_1915813 Dpm3 NCBI_Gene:68563,ENSEMBL:ENSMUSG00000042737 MGI:1915813 protein coding gene dolichyl-phosphate mannosyltransferase polypeptide 3
3 gene 89.26825 89.27057 negative MGI_C57BL6J_107417 Slc50a1 NCBI_Gene:19729,ENSEMBL:ENSMUSG00000027953 MGI:107417 protein coding gene solute carrier family 50 (sugar transporter), member 1
3 gene 89.27173 89.28114 negative MGI_C57BL6J_103236 Efna1 NCBI_Gene:13636,ENSEMBL:ENSMUSG00000027954 MGI:103236 protein coding gene ephrin A1
3 gene 89.29054 89.30290 negative MGI_C57BL6J_5593004 Gm33845 NCBI_Gene:102636898 MGI:5593004 lncRNA gene predicted gene, 33845
3 gene 89.30248 89.30273 positive MGI_C57BL6J_5452419 Gm22642 ENSEMBL:ENSMUSG00000093093 MGI:5452419 unclassified non-coding RNA gene predicted gene, 22642
3 gene 89.30324 89.31422 positive MGI_C57BL6J_5593173 Gm34014 NCBI_Gene:102637122 MGI:5593173 lncRNA gene predicted gene, 34014
3 gene 89.31390 89.32296 negative MGI_C57BL6J_106644 Efna3 NCBI_Gene:13638,ENSEMBL:ENSMUSG00000028039 MGI:106644 protein coding gene ephrin A3
3 gene 89.31544 89.31891 positive MGI_C57BL6J_3802094 Gm15998 ENSEMBL:ENSMUSG00000086389 MGI:3802094 lncRNA gene predicted gene 15998
3 gene 89.32590 89.33117 negative MGI_C57BL6J_5593277 Gm34118 NCBI_Gene:102637253 MGI:5593277 lncRNA gene predicted gene, 34118
3 gene 89.33339 89.33803 negative MGI_C57BL6J_106643 Efna4 NCBI_Gene:13639,ENSEMBL:ENSMUSG00000028040 MGI:106643 protein coding gene ephrin A4
3 gene 89.33785 89.34783 positive MGI_C57BL6J_3704222 4731419I09Rik ENSEMBL:ENSMUSG00000097004 MGI:3704222 lncRNA gene RIKEN cDNA 4731419I09 gene
3 gene 89.33854 89.35003 negative MGI_C57BL6J_1333882 Adam15 NCBI_Gene:11490,ENSEMBL:ENSMUSG00000028041 MGI:1333882 protein coding gene a disintegrin and metallopeptidase domain 15 (metargidin)
3 gene 89.35022 89.36525 negative MGI_C57BL6J_1925022 Dcst1 NCBI_Gene:77772,ENSEMBL:ENSMUSG00000042672 MGI:1925022 protein coding gene DC-STAMP domain containing 1
3 gene 89.35042 89.37764 positive MGI_C57BL6J_2685606 Dcst2 NCBI_Gene:329702,ENSEMBL:ENSMUSG00000109293 MGI:2685606 protein coding gene DC-STAMP domain containing 2
3 pseudogene 89.35363 89.35490 positive MGI_C57BL6J_3708679 Gm10702 ENSEMBL:ENSMUSG00000074467 MGI:3708679 pseudogene predicted gene 10702
3 gene 89.37764 89.39481 negative MGI_C57BL6J_102755 Zbtb7b NCBI_Gene:22724,ENSEMBL:ENSMUSG00000028042 MGI:102755 protein coding gene zinc finger and BTB domain containing 7B
3 gene 89.39185 89.39878 positive MGI_C57BL6J_3642531 Gm15417 NCBI_Gene:545539,ENSEMBL:ENSMUSG00000074466 MGI:3642531 lncRNA gene predicted gene 15417
3 gene 89.40099 89.40279 negative MGI_C57BL6J_1930020 Lenep NCBI_Gene:57275,ENSEMBL:ENSMUSG00000078173 MGI:1930020 protein coding gene lens epithelial protein
3 gene 89.40100 89.41187 negative MGI_C57BL6J_2443030 Flad1 NCBI_Gene:319945,ENSEMBL:ENSMUSG00000042642 MGI:2443030 protein coding gene flavin adenine dinucleotide synthetase 1
3 gene 89.41547 89.41838 negative MGI_C57BL6J_1889208 Cks1b NCBI_Gene:54124,ENSEMBL:ENSMUSG00000028044 MGI:1889208 protein coding gene CDC28 protein kinase 1b
3 gene 89.41840 89.43003 positive MGI_C57BL6J_98296 Shc1 NCBI_Gene:20416,ENSEMBL:ENSMUSG00000042626 MGI:98296 protein coding gene src homology 2 domain-containing transforming protein C1
3 gene 89.43012 89.43513 positive MGI_C57BL6J_1916161 Pygo2 NCBI_Gene:68911,ENSEMBL:ENSMUSG00000047824 MGI:1916161 protein coding gene pygopus 2
3 gene 89.43667 89.45095 positive MGI_C57BL6J_2441670 Pbxip1 NCBI_Gene:229534,ENSEMBL:ENSMUSG00000042613 MGI:2441670 protein coding gene pre B cell leukemia transcription factor interacting protein 1
3 gene 89.45077 89.45094 positive MGI_C57BL6J_1916805 2310033F14Rik NA NA unclassified gene RIKEN cDNA 2310033F14 gene
3 gene 89.45454 89.46901 positive MGI_C57BL6J_1915853 Pmvk NCBI_Gene:68603,ENSEMBL:ENSMUSG00000027952 MGI:1915853 protein coding gene phosphomevalonate kinase
3 gene 89.52016 89.67513 positive MGI_C57BL6J_2153183 Kcnn3 NCBI_Gene:140493,ENSEMBL:ENSMUSG00000000794 MGI:2153183 protein coding gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
3 gene 89.71502 89.75346 positive MGI_C57BL6J_1889575 Adar NCBI_Gene:56417,ENSEMBL:ENSMUSG00000027951 MGI:1889575 protein coding gene adenosine deaminase, RNA-specific
3 gene 89.74620 89.76463 negative MGI_C57BL6J_87891 Chrnb2 NCBI_Gene:11444,ENSEMBL:ENSMUSG00000027950 MGI:87891 protein coding gene cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)
3 gene 89.76751 89.77340 negative MGI_C57BL6J_1921284 4632404H12Rik NCBI_Gene:74034,ENSEMBL:ENSMUSG00000042579 MGI:1921284 lncRNA gene RIKEN cDNA 4632404H12 gene
3 gene 89.77361 89.78400 positive MGI_C57BL6J_1917343 Ube2q1 NCBI_Gene:70093,ENSEMBL:ENSMUSG00000042572 MGI:1917343 protein coding gene ubiquitin-conjugating enzyme E2Q family member 1
3 pseudogene 89.81948 89.82168 positive MGI_C57BL6J_3645290 Gm8969 NCBI_Gene:668087,ENSEMBL:ENSMUSG00000106564 MGI:3645290 pseudogene predicted gene 8969
3 gene 89.83137 89.85885 positive MGI_C57BL6J_1099462 She NCBI_Gene:214547,ENSEMBL:ENSMUSG00000046280 MGI:1099462 protein coding gene src homology 2 domain-containing transforming protein E
3 gene 89.86406 89.91320 negative MGI_C57BL6J_105304 Il6ra NCBI_Gene:16194,ENSEMBL:ENSMUSG00000027947 MGI:105304 protein coding gene interleukin 6 receptor, alpha
3 gene 89.87208 89.89024 positive MGI_C57BL6J_5826448 Gm46811 NCBI_Gene:108168879 MGI:5826448 lncRNA gene predicted gene, 46811
3 gene 89.91292 89.91405 positive MGI_C57BL6J_5662946 Gm42809 ENSEMBL:ENSMUSG00000105941 MGI:5662946 lncRNA gene predicted gene 42809
3 gene 89.93948 89.96351 negative MGI_C57BL6J_1859660 Atp8b2 NCBI_Gene:54667,ENSEMBL:ENSMUSG00000060671 MGI:1859660 protein coding gene ATPase, class I, type 8B, member 2
3 pseudogene 89.96344 89.96973 negative MGI_C57BL6J_4356425 Aqp10-ps NCBI_Gene:435743,ENSEMBL:ENSMUSG00000105082 MGI:4356425 pseudogene aquaporin 10, pseudogene
3 gene 89.96800 89.96816 negative MGI_C57BL6J_5453823 Gm24046 ENSEMBL:ENSMUSG00000065045 MGI:5453823 snRNA gene predicted gene, 24046
3 gene 89.99545 89.99878 negative MGI_C57BL6J_1346319 Hax1 NCBI_Gene:23897,ENSEMBL:ENSMUSG00000027944 MGI:1346319 protein coding gene HCLS1 associated X-1
3 gene 89.99876 90.02144 positive MGI_C57BL6J_5011895 Gm19710 NCBI_Gene:100503469,ENSEMBL:ENSMUSG00000105552 MGI:5011895 lncRNA gene predicted gene, 19710
3 gene 89.99959 90.05263 negative MGI_C57BL6J_1921633 Ubap2l NCBI_Gene:74383,ENSEMBL:ENSMUSG00000042520 MGI:1921633 protein coding gene ubiquitin-associated protein 2-like
3 gene 90.01059 90.01073 negative MGI_C57BL6J_5454385 Gm24608 ENSEMBL:ENSMUSG00000077569 MGI:5454385 snoRNA gene predicted gene, 24608
3 gene 90.01115 90.01121 negative MGI_C57BL6J_5531378 Mir7669 miRBase:MI0025009,NCBI_Gene:102465771,ENSEMBL:ENSMUSG00000098397 MGI:5531378 miRNA gene microRNA 7669
3 gene 90.05164 90.06835 positive MGI_C57BL6J_1914027 4933434E20Rik NCBI_Gene:99650,ENSEMBL:ENSMUSG00000027942 MGI:1914027 protein coding gene RIKEN cDNA 4933434E20 gene
3 gene 90.05726 90.05838 positive MGI_C57BL6J_4414960 Gm16540 ENSEMBL:ENSMUSG00000090005 MGI:4414960 lncRNA gene predicted gene 16540
3 gene 90.06280 90.06835 positive MGI_C57BL6J_1920795 1700094D03Rik NCBI_Gene:73545 MGI:1920795 protein coding gene RIKEN cDNA 1700094D03 gene
3 gene 90.07002 90.07010 positive MGI_C57BL6J_3718457 Mir190b miRBase:MI0005478,NCBI_Gene:100124481,ENSEMBL:ENSMUSG00000077996 MGI:3718457 miRNA gene microRNA 190b
3 gene 90.07265 90.10090 positive MGI_C57BL6J_1890149 Tpm3 NCBI_Gene:59069,ENSEMBL:ENSMUSG00000027940 MGI:1890149 protein coding gene tropomyosin 3, gamma
3 gene 90.10157 90.21215 positive MGI_C57BL6J_1924845 Nup210l NCBI_Gene:77595,ENSEMBL:ENSMUSG00000027939 MGI:1924845 protein coding gene nucleoporin 210-like
3 gene 90.12465 90.12712 positive MGI_C57BL6J_5594024 Gm34865 NCBI_Gene:102638261 MGI:5594024 lncRNA gene predicted gene, 34865
3 gene 90.12654 90.12667 positive MGI_C57BL6J_5453500 Gm23723 ENSEMBL:ENSMUSG00000064930 MGI:5453500 snoRNA gene predicted gene, 23723
3 pseudogene 90.12677 90.12706 positive MGI_C57BL6J_5663849 Gm43712 ENSEMBL:ENSMUSG00000104649 MGI:5663849 pseudogene predicted gene 43712
3 gene 90.19868 90.19879 positive MGI_C57BL6J_5453962 Gm24185 ENSEMBL:ENSMUSG00000084527 MGI:5453962 snRNA gene predicted gene, 24185
3 gene 90.21252 90.21365 negative MGI_C57BL6J_1888676 Rps27 NCBI_Gene:57294,ENSEMBL:ENSMUSG00000090733 MGI:1888676 protein coding gene ribosomal protein S27
3 gene 90.21370 90.22639 positive MGI_C57BL6J_1927232 Rab13 NCBI_Gene:68328,ENSEMBL:ENSMUSG00000027935 MGI:1927232 protein coding gene RAB13, member RAS oncogene family
3 gene 90.23160 90.23584 positive MGI_C57BL6J_1346082 Jtb NCBI_Gene:23922,ENSEMBL:ENSMUSG00000027937 MGI:1346082 protein coding gene jumping translocation breakpoint
3 gene 90.23750 90.24445 negative MGI_C57BL6J_1916603 Creb3l4 NCBI_Gene:78284,ENSEMBL:ENSMUSG00000027938 MGI:1916603 protein coding gene cAMP responsive element binding protein 3-like 4
3 gene 90.24817 90.25361 positive MGI_C57BL6J_1353474 Slc39a1 NCBI_Gene:30791,ENSEMBL:ENSMUSG00000052310 MGI:1353474 protein coding gene solute carrier family 39 (zinc transporter), member 1
3 gene 90.25386 90.26413 positive MGI_C57BL6J_1921593 Crtc2 NCBI_Gene:74343,ENSEMBL:ENSMUSG00000027936 MGI:1921593 protein coding gene CREB regulated transcription coactivator 2
3 gene 90.26492 90.28067 positive MGI_C57BL6J_2446201 Dennd4b NCBI_Gene:229541,ENSEMBL:ENSMUSG00000042404 MGI:2446201 protein coding gene DENN/MADD domain containing 4B
3 gene 90.27015 90.27021 positive MGI_C57BL6J_5530752 Mir7012 miRBase:MI0022861,NCBI_Gene:102465612,ENSEMBL:ENSMUSG00000099199 MGI:5530752 miRNA gene microRNA 7012
3 gene 90.28999 90.29073 positive MGI_C57BL6J_1918721 8430422J01Rik NA NA unclassified gene RIKEN cDNA 8430422J01 gene
3 gene 90.29230 90.29398 negative MGI_C57BL6J_1923075 4930537H20Rik ENSEMBL:ENSMUSG00000105350 MGI:1923075 lncRNA gene RIKEN cDNA 4930537H20 gene
3 gene 90.29318 90.36341 positive MGI_C57BL6J_2443225 Gatad2b NCBI_Gene:229542,ENSEMBL:ENSMUSG00000042390 MGI:2443225 protein coding gene GATA zinc finger domain containing 2B
3 gene 90.31152 90.31701 positive MGI_C57BL6J_5791313 Gm45477 ENSEMBL:ENSMUSG00000108394 MGI:5791313 unclassified gene predicted gene 45477
3 gene 90.33540 90.33795 positive MGI_C57BL6J_5791190 Gm45354 ENSEMBL:ENSMUSG00000108689 MGI:5791190 unclassified gene predicted gene 45354
3 gene 90.38523 90.39005 negative MGI_C57BL6J_1347358 Slc27a3 NCBI_Gene:26568,ENSEMBL:ENSMUSG00000027932 MGI:1347358 protein coding gene solute carrier family 27 (fatty acid transporter), member 3
3 gene 90.39138 90.43364 negative MGI_C57BL6J_2140050 Ints3 NCBI_Gene:229543,ENSEMBL:ENSMUSG00000027933 MGI:2140050 protein coding gene integrator complex subunit 3
3 gene 90.45059 90.46593 negative MGI_C57BL6J_97371 Npr1 NCBI_Gene:18160,ENSEMBL:ENSMUSG00000027931 MGI:97371 protein coding gene natriuretic peptide receptor 1
3 gene 90.45158 90.45709 positive MGI_C57BL6J_3801855 Gm16048 ENSEMBL:ENSMUSG00000087411 MGI:3801855 lncRNA gene predicted gene 16048
3 pseudogene 90.46890 90.47096 negative MGI_C57BL6J_5663732 Gm43595 ENSEMBL:ENSMUSG00000105746 MGI:5663732 pseudogene predicted gene 43595
3 gene 90.47586 90.47593 negative MGI_C57BL6J_4413988 n-TMcat11 NCBI_Gene:102467358 MGI:4413988 tRNA gene nuclear encoded tRNA methionine 11 (anticodon CAT)
3 gene 90.47613 90.48838 positive MGI_C57BL6J_1915031 Ilf2 NCBI_Gene:67781,ENSEMBL:ENSMUSG00000001016 MGI:1915031 protein coding gene interleukin enhancer binding factor 2
3 gene 90.48803 90.49103 negative MGI_C57BL6J_1333745 Snapin NCBI_Gene:20615,ENSEMBL:ENSMUSG00000001018 MGI:1333745 protein coding gene SNAP-associated protein
3 gene 90.49854 90.50954 negative MGI_C57BL6J_1913761 Chtop NCBI_Gene:66511,ENSEMBL:ENSMUSG00000001017 MGI:1913761 protein coding gene chromatin target of PRMT1
3 gene 90.51103 90.51439 negative MGI_C57BL6J_1338917 S100a1 NCBI_Gene:20193,ENSEMBL:ENSMUSG00000044080 MGI:1338917 protein coding gene S100 calcium binding protein A1
3 gene 90.51444 90.52458 positive MGI_C57BL6J_109581 S100a13 NCBI_Gene:20196,ENSEMBL:ENSMUSG00000042312 MGI:109581 protein coding gene S100 calcium binding protein A13
3 gene 90.52685 90.52884 positive MGI_C57BL6J_1913416 S100a14 NCBI_Gene:66166,ENSEMBL:ENSMUSG00000042306 MGI:1913416 protein coding gene S100 calcium binding protein A14
3 gene 90.53725 90.54315 positive MGI_C57BL6J_1915110 S100a16 NCBI_Gene:67860,ENSEMBL:ENSMUSG00000074457 MGI:1915110 protein coding gene S100 calcium binding protein A16
3 gene 90.54862 90.54872 positive MGI_C57BL6J_5454370 Gm24593 ENSEMBL:ENSMUSG00000084456 MGI:5454370 snRNA gene predicted gene, 24593
3 gene 90.56036 90.60271 positive MGI_C57BL6J_1338849 S100a3 NCBI_Gene:20197,ENSEMBL:ENSMUSG00000001021 MGI:1338849 protein coding gene S100 calcium binding protein A3
3 gene 90.56036 90.59153 positive MGI_C57BL6J_3510999 S100a2 NCBI_Gene:628324,ENSEMBL:ENSMUSG00000094018 MGI:3510999 protein coding gene S100 calcium binding protein A2
3 gene 90.56056 90.56070 negative MGI_C57BL6J_5453241 Gm23464 ENSEMBL:ENSMUSG00000065079 MGI:5453241 snRNA gene predicted gene, 23464
3 gene 90.60190 90.60589 positive MGI_C57BL6J_5662811 Gm42674 ENSEMBL:ENSMUSG00000105518 MGI:5662811 protein coding gene predicted gene 42674
3 gene 90.60377 90.60604 positive MGI_C57BL6J_1330282 S100a4 NCBI_Gene:20198,ENSEMBL:ENSMUSG00000001020 MGI:1330282 protein coding gene S100 calcium binding protein A4
3 gene 90.60648 90.61178 positive MGI_C57BL6J_1338915 S100a5 NCBI_Gene:20199,ENSEMBL:ENSMUSG00000001023 MGI:1338915 protein coding gene S100 calcium binding protein A5
3 gene 90.61288 90.62418 positive MGI_C57BL6J_1339467 S100a6 NCBI_Gene:20200,ENSEMBL:ENSMUSG00000001025 MGI:1339467 protein coding gene S100 calcium binding protein A6 (calcyclin)
3 pseudogene 90.65165 90.65187 negative MGI_C57BL6J_5011924 Gm19739 NCBI_Gene:102638335,ENSEMBL:ENSMUSG00000105644 MGI:5011924 pseudogene predicted gene, 19739
3 gene 90.65183 90.65867 positive MGI_C57BL6J_2687194 S100a7a NCBI_Gene:381493,ENSEMBL:ENSMUSG00000063767 MGI:2687194 protein coding gene S100 calcium binding protein A7A
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 pseudogene 90.84637 90.84825 negative MGI_C57BL6J_5663372 Gm43235 ENSEMBL:ENSMUSG00000106174 MGI:5663372 pseudogene predicted gene 43235
3 pseudogene 91.00976 91.01718 negative MGI_C57BL6J_3643784 Gm9023 NCBI_Gene:668179,ENSEMBL:ENSMUSG00000106257 MGI:3643784 pseudogene predicted gene 9023
3 pseudogene 91.03957 91.03987 positive MGI_C57BL6J_3779688 Gm7166 ENSEMBL:ENSMUSG00000105919 MGI:3779688 pseudogene predicted gene 7166
3 pseudogene 91.07166 91.07519 positive MGI_C57BL6J_1922392 4930529C04Rik NCBI_Gene:619677,ENSEMBL:ENSMUSG00000086377 MGI:1922392 pseudogene RIKEN cDNA 4930529C04 gene
3 gene 91.08814 91.10743 negative MGI_C57BL6J_2684973 S100a7l2 NCBI_Gene:229550,ENSEMBL:ENSMUSG00000091175 MGI:2684973 protein coding gene S100 calcium binding protein A7 like 2
3 gene 91.62856 91.63070 negative MGI_C57BL6J_5595482 Gm36323 NCBI_Gene:102640196 MGI:5595482 protein coding gene predicted gene, 36323
3 gene 91.73835 91.74049 negative MGI_C57BL6J_5594344 Gm35185 NCBI_Gene:102638680 MGI:5594344 protein coding gene predicted gene, 35185
3 pseudogene 91.91438 91.91653 positive MGI_C57BL6J_5826474 Gm46837 NCBI_Gene:108168919 MGI:5826474 pseudogene predicted gene, 46837
3 pseudogene 91.99611 91.99725 positive MGI_C57BL6J_5009818 Gm17742 NCBI_Gene:383887 MGI:5009818 pseudogene predicted gene, 17742
3 gene 92.01076 92.01086 negative MGI_C57BL6J_5453474 Gm23697 ENSEMBL:ENSMUSG00000077085 MGI:5453474 miRNA gene predicted gene, 23697
3 gene 92.01248 92.03267 positive MGI_C57BL6J_2685266 Pglyrp3 NCBI_Gene:242100,ENSEMBL:ENSMUSG00000042244 MGI:2685266 protein coding gene peptidoglycan recognition protein 3
3 pseudogene 92.02449 92.02503 positive MGI_C57BL6J_103164 Mif-ps3 NCBI_Gene:619750,ENSEMBL:ENSMUSG00000082826 MGI:103164 pseudogene macrophage migration inhibitory factor, pseudogene 3
3 gene 92.06140 92.06151 negative MGI_C57BL6J_5454922 Gm25145 ENSEMBL:ENSMUSG00000096133 MGI:5454922 miRNA gene predicted gene, 25145
3 gene 92.08027 92.08314 negative MGI_C57BL6J_96816 Lor NCBI_Gene:16939,ENSEMBL:ENSMUSG00000043165 MGI:96816 protein coding gene loricrin
3 gene 92.09735 92.09963 positive MGI_C57BL6J_5663873 Gm43736 ENSEMBL:ENSMUSG00000104981 MGI:5663873 lncRNA gene predicted gene 43736
3 gene 92.10258 92.14274 negative MGI_C57BL6J_1922313 4930511M18Rik ENSEMBL:ENSMUSG00000104791 MGI:1922313 lncRNA gene RIKEN cDNA 4930511M18 gene
3 gene 92.11319 92.11932 positive MGI_C57BL6J_5663872 Gm43735 ENSEMBL:ENSMUSG00000106143 MGI:5663872 lncRNA gene predicted gene 43735
3 gene 92.12220 92.12395 negative MGI_C57BL6J_1925680 Prr9 NCBI_Gene:109314,ENSEMBL:ENSMUSG00000056270 MGI:1925680 protein coding gene proline rich 9
3 gene 92.13499 92.14275 negative MGI_C57BL6J_1916582 Lelp1 NCBI_Gene:69332,ENSEMBL:ENSMUSG00000027927 MGI:1916582 protein coding gene late cornified envelope-like proline-rich 1
3 gene 92.17019 92.18323 positive MGI_C57BL6J_5594598 Gm35439 NCBI_Gene:102639022,ENSEMBL:ENSMUSG00000105476 MGI:5594598 lncRNA gene predicted gene, 35439
3 gene 92.21580 92.22249 positive MGI_C57BL6J_1330350 Sprr2a1 NCBI_Gene:20755,ENSEMBL:ENSMUSG00000078664 MGI:1330350 protein coding gene small proline-rich protein 2A1
3 gene 92.21592 92.25730 positive MGI_C57BL6J_3845026 Sprr2a2 NCBI_Gene:100303744,ENSEMBL:ENSMUSG00000068893 MGI:3845026 protein coding gene small proline-rich protein 2A2
3 pseudogene 92.22741 92.22870 negative MGI_C57BL6J_3645657 Gm5850 NCBI_Gene:545543,ENSEMBL:ENSMUSG00000103286 MGI:3645657 pseudogene predicted gene 5850
3 gene 92.24293 92.24624 negative MGI_C57BL6J_5610315 Gm37087 ENSEMBL:ENSMUSG00000103187 MGI:5610315 unclassified gene predicted gene, 37087
3 pseudogene 92.26222 92.26350 negative MGI_C57BL6J_3645652 Gm5851 NCBI_Gene:545545,ENSEMBL:ENSMUSG00000104028 MGI:3645652 pseudogene predicted gene 5851
3 gene 92.27773 92.28103 negative MGI_C57BL6J_5610980 Gm37752 ENSEMBL:ENSMUSG00000103385 MGI:5610980 unclassified gene predicted gene, 37752
3 gene 92.28530 92.29140 positive MGI_C57BL6J_3845028 Sprr2a3 NCBI_Gene:100042514,ENSEMBL:ENSMUSG00000074445 MGI:3845028 protein coding gene small proline-rich protein 2A3
3 gene 92.31662 92.31808 positive MGI_C57BL6J_1330352 Sprr2b NCBI_Gene:20756,ENSEMBL:ENSMUSG00000050092 MGI:1330352 protein coding gene small proline-rich protein 2B
3 pseudogene 92.32091 92.32105 positive MGI_C57BL6J_5610656 Gm37428 ENSEMBL:ENSMUSG00000103518 MGI:5610656 pseudogene predicted gene, 37428
3 pseudogene 92.32660 92.32690 positive MGI_C57BL6J_1330351 Sprr2c-ps NCBI_Gene:20757,ENSEMBL:ENSMUSG00000103221 MGI:1330351 pseudogene small proline-rich protein 2C, pseudogene
3 gene 92.33914 92.34087 positive MGI_C57BL6J_1330347 Sprr2d NCBI_Gene:20758,ENSEMBL:ENSMUSG00000042212 MGI:1330347 protein coding gene small proline-rich protein 2D
3 gene 92.35214 92.35345 positive MGI_C57BL6J_1330346 Sprr2e NCBI_Gene:20759,ENSEMBL:ENSMUSG00000055030 MGI:1330346 protein coding gene small proline-rich protein 2E
3 gene 92.36519 92.36644 positive MGI_C57BL6J_1330349 Sprr2f NCBI_Gene:20760,ENSEMBL:ENSMUSG00000050635 MGI:1330349 protein coding gene small proline-rich protein 2F
3 pseudogene 92.37391 92.37523 positive MGI_C57BL6J_1330348 Sprr2g NCBI_Gene:20761,ENSEMBL:ENSMUSG00000046203 MGI:1330348 polymorphic pseudogene small proline-rich protein 2G
3 gene 92.38568 92.38732 positive MGI_C57BL6J_1330343 Sprr2h NCBI_Gene:20762,ENSEMBL:ENSMUSG00000046259 MGI:1330343 protein coding gene small proline-rich protein 2H
3 gene 92.40799 92.40927 positive MGI_C57BL6J_1330309 Sprr2i NCBI_Gene:20763,ENSEMBL:ENSMUSG00000042157 MGI:1330309 protein coding gene small proline-rich protein 2I
3 pseudogene 92.41808 92.41940 positive MGI_C57BL6J_1330345 Sprr2j-ps NCBI_Gene:20764,ENSEMBL:ENSMUSG00000027925 MGI:1330345 pseudogene small proline-rich protein 2J, pseudogene
3 gene 92.42803 92.42942 negative MGI_C57BL6J_3642386 Gm9774 NCBI_Gene:100043022,ENSEMBL:ENSMUSG00000042165 MGI:3642386 protein coding gene predicted pseudogene 9774
3 gene 92.43258 92.43393 positive MGI_C57BL6J_1330344 Sprr2k NCBI_Gene:20765,ENSEMBL:ENSMUSG00000054215 MGI:1330344 protein coding gene small proline-rich protein 2K
3 gene 92.43681 92.43882 negative MGI_C57BL6J_106659 Sprr1b NCBI_Gene:20754,ENSEMBL:ENSMUSG00000048455 MGI:106659 protein coding gene small proline-rich protein 1B
3 gene 92.45650 92.45872 negative MGI_C57BL6J_1330237 Sprr3 NCBI_Gene:20766,ENSEMBL:ENSMUSG00000045539 MGI:1330237 protein coding gene small proline-rich protein 3
3 pseudogene 92.47324 92.47354 negative MGI_C57BL6J_5610605 Gm37377 ENSEMBL:ENSMUSG00000102345 MGI:5610605 pseudogene predicted gene, 37377
3 gene 92.48395 92.48589 negative MGI_C57BL6J_106660 Sprr1a NCBI_Gene:20753,ENSEMBL:ENSMUSG00000050359 MGI:106660 protein coding gene small proline-rich protein 1A
3 gene 92.50026 92.50049 negative MGI_C57BL6J_2654508 Sprr4 NCBI_Gene:229562,ENSEMBL:ENSMUSG00000045566 MGI:2654508 protein coding gene small proline-rich protein 4
3 gene 92.53251 92.53451 negative MGI_C57BL6J_1924218 2310046K23Rik ENSEMBL:ENSMUSG00000102308 MGI:1924218 protein coding gene RIKEN cDNA 2310046K23 gene
3 gene 92.57090 92.57379 negative MGI_C57BL6J_96626 Ivl NCBI_Gene:16447,ENSEMBL:ENSMUSG00000049128 MGI:96626 protein coding gene involucrin
3 gene 92.57387 92.62033 positive MGI_C57BL6J_5594798 Gm35639 NCBI_Gene:102639293 MGI:5594798 lncRNA gene predicted gene, 35639
3 gene 92.58387 92.58902 negative MGI_C57BL6J_96945 Smcp NCBI_Gene:17235,ENSEMBL:ENSMUSG00000074435 MGI:96945 protein coding gene sperm mitochondria-associated cysteine-rich protein
3 gene 92.60472 92.60749 negative MGI_C57BL6J_3588251 2210017I01Rik ENSEMBL:ENSMUSG00000103523 MGI:3588251 protein coding gene RIKEN cDNA 2210017I01 gene
3 gene 92.60476 92.62166 negative MGI_C57BL6J_1925632 Lce6a NCBI_Gene:78382,ENSEMBL:ENSMUSG00000086848 MGI:1925632 protein coding gene late cornified envelope 6A
3 gene 92.62034 92.64644 positive MGI_C57BL6J_5826449 Gm46812 NCBI_Gene:108168880 MGI:5826449 lncRNA gene predicted gene, 46812
3 gene 92.63906 92.64007 negative MGI_C57BL6J_5594858 Gm35699 NCBI_Gene:102639369 MGI:5594858 lncRNA gene predicted gene, 35699
3 gene 92.64653 92.64831 negative MGI_C57BL6J_1914377 Lce1a1 NCBI_Gene:67127,ENSEMBL:ENSMUSG00000057609 MGI:1914377 protein coding gene late cornified envelope 1A1
3 gene 92.65565 92.65693 negative MGI_C57BL6J_1915970 Lce1b NCBI_Gene:68720,ENSEMBL:ENSMUSG00000027923 MGI:1915970 protein coding gene late cornified envelope 1B
3 pseudogene 92.66419 92.66490 positive MGI_C57BL6J_3648077 Rpl13-ps4 NCBI_Gene:620325,ENSEMBL:ENSMUSG00000104215 MGI:3648077 pseudogene ribosomal protein L13, pseudogene 4
3 gene 92.66861 92.67032 negative MGI_C57BL6J_1920972 Lce1a2 NCBI_Gene:73722,ENSEMBL:ENSMUSG00000068890 MGI:1920972 protein coding gene late cornified envelope 1A2
3 gene 92.67925 92.68092 positive MGI_C57BL6J_1920969 Lce1c NCBI_Gene:73719,ENSEMBL:ENSMUSG00000042092 MGI:1920969 protein coding gene late cornified envelope 1C
3 gene 92.68550 92.68721 negative MGI_C57BL6J_1916861 Lce1d NCBI_Gene:69611,ENSEMBL:ENSMUSG00000103243 MGI:1916861 protein coding gene late cornified envelope 1D
3 pseudogene 92.68942 92.69016 positive MGI_C57BL6J_3782379 Gm4202 NCBI_Gene:100418460,ENSEMBL:ENSMUSG00000091421 MGI:3782379 pseudogene predicted gene 4202
3 gene 92.70740 92.70907 negative MGI_C57BL6J_1915944 Lce1e NCBI_Gene:68694,ENSEMBL:ENSMUSG00000068889 MGI:1915944 protein coding gene late cornified envelope 1E
3 gene 92.71868 92.72035 negative MGI_C57BL6J_1915078 Lce1f NCBI_Gene:67828,ENSEMBL:ENSMUSG00000042124 MGI:1915078 protein coding gene late cornified envelope 1F
3 gene 92.73765 92.73910 negative MGI_C57BL6J_5611347 Gm38119 ENSEMBL:ENSMUSG00000103084 MGI:5611347 protein coding gene predicted gene, 38119
3 gene 92.75015 92.75234 negative MGI_C57BL6J_1913445 Lce1g NCBI_Gene:66195,ENSEMBL:ENSMUSG00000027919 MGI:1913445 protein coding gene late cornified envelope 1G
3 gene 92.76322 92.76507 negative MGI_C57BL6J_1914968 Lce1h NCBI_Gene:67718,ENSEMBL:ENSMUSG00000049593 MGI:1914968 protein coding gene late cornified envelope 1H
3 gene 92.77721 92.77890 negative MGI_C57BL6J_1923835 Lce1i NCBI_Gene:76585,ENSEMBL:ENSMUSG00000068888 MGI:1923835 protein coding gene late cornified envelope 1I
3 gene 92.78884 92.79051 negative MGI_C57BL6J_3702532 Lce1j NCBI_Gene:545547,ENSEMBL:ENSMUSG00000068887 MGI:3702532 protein coding gene late cornified envelope 1J
3 gene 92.80629 92.80789 negative MGI_C57BL6J_3702534 Lce1k NCBI_Gene:631101,ENSEMBL:ENSMUSG00000095870 MGI:3702534 protein coding gene late cornified envelope 1K
3 gene 92.82307 92.82725 negative MGI_C57BL6J_1920981 Kprp NCBI_Gene:433619,ENSEMBL:ENSMUSG00000059832 MGI:1920981 protein coding gene keratinocyte expressed, proline-rich
3 gene 92.84330 92.84368 negative MGI_C57BL6J_5611429 Gm38201 ENSEMBL:ENSMUSG00000102469 MGI:5611429 lncRNA gene predicted gene, 38201
3 gene 92.84995 92.85129 negative MGI_C57BL6J_1920980 Lce1l NCBI_Gene:73730,ENSEMBL:ENSMUSG00000046676 MGI:1920980 protein coding gene late cornified envelope 1L
3 gene 92.86836 92.87022 negative MGI_C57BL6J_1913783 2310050C09Rik NCBI_Gene:66533,ENSEMBL:ENSMUSG00000090314 MGI:1913783 protein coding gene RIKEN cDNA 2310050C09 gene
3 gene 92.92529 92.92623 negative MGI_C57BL6J_3645650 Lce3a NCBI_Gene:545548,ENSEMBL:ENSMUSG00000054325 MGI:3645650 protein coding gene late cornified envelope 3A
3 gene 92.93298 92.93410 positive MGI_C57BL6J_1913594 Lce3b NCBI_Gene:66344,ENSEMBL:ENSMUSG00000042031 MGI:1913594 protein coding gene late cornified envelope 3B
3 pseudogene 92.93768 92.93807 positive MGI_C57BL6J_5611306 Gm38078 ENSEMBL:ENSMUSG00000104364 MGI:5611306 pseudogene predicted gene, 38078
3 gene 92.94449 92.94573 positive MGI_C57BL6J_2135932 Lce3c NCBI_Gene:94060,ENSEMBL:ENSMUSG00000045475 MGI:2135932 protein coding gene late cornified envelope 3C
3 gene 92.94916 92.94926 negative MGI_C57BL6J_5454258 Gm24481 ENSEMBL:ENSMUSG00000087835 MGI:5454258 snRNA gene predicted gene, 24481
3 gene 92.95739 92.95857 positive MGI_C57BL6J_3642919 Lce3d NCBI_Gene:630994,ENSEMBL:ENSMUSG00000043472 MGI:3642919 protein coding gene late cornified envelope 3D
3 gene 92.96201 92.96212 negative MGI_C57BL6J_5452354 Gm22577 ENSEMBL:ENSMUSG00000065665 MGI:5452354 snRNA gene predicted gene, 22577
3 gene 92.96706 92.96828 positive MGI_C57BL6J_1916764 Lce3e NCBI_Gene:69514,ENSEMBL:ENSMUSG00000074433 MGI:1916764 protein coding gene late cornified envelope 3E
3 gene 92.99223 92.99343 positive MGI_C57BL6J_1916770 Lce3f NCBI_Gene:69520,ENSEMBL:ENSMUSG00000068885 MGI:1916770 protein coding gene late cornified envelope 3F
3 gene 93.01421 93.01569 negative MGI_C57BL6J_1921425 Crct1 NCBI_Gene:74175,ENSEMBL:ENSMUSG00000027913 MGI:1921425 protein coding gene cysteine-rich C-terminal 1
3 gene 93.01781 93.01906 negative MGI_C57BL6J_1913453 Lce1m NCBI_Gene:66203,ENSEMBL:ENSMUSG00000027912 MGI:1913453 protein coding gene late cornified envelope 1M
3 pseudogene 93.06474 93.06496 negative MGI_C57BL6J_5611268 Gm38040 ENSEMBL:ENSMUSG00000104298 MGI:5611268 pseudogene predicted gene, 38040
3 gene 93.06882 93.07551 positive MGI_C57BL6J_3645677 Tdpoz8 NCBI_Gene:229571,ENSEMBL:ENSMUSG00000096879 MGI:3645677 protein coding gene TD and POZ domain containing 8
3 gene 93.09758 93.12825 negative MGI_C57BL6J_5594944 Gm35785 NCBI_Gene:102639481 MGI:5594944 lncRNA gene predicted gene, 35785
3 pseudogene 93.10044 93.10060 negative MGI_C57BL6J_5610589 Gm37361 NCBI_Gene:108168920,ENSEMBL:ENSMUSG00000103628 MGI:5610589 pseudogene predicted gene, 37361
3 gene 93.14479 93.14982 positive MGI_C57BL6J_2685861 Crnn NCBI_Gene:381457,ENSEMBL:ENSMUSG00000078657 MGI:2685861 protein coding gene cornulin
3 pseudogene 93.15218 93.15287 positive MGI_C57BL6J_5610729 Gm37501 ENSEMBL:ENSMUSG00000103902 MGI:5610729 pseudogene predicted gene, 37501
3 gene 93.19727 93.22139 positive MGI_C57BL6J_3645678 Flg2 NCBI_Gene:229574,ENSEMBL:ENSMUSG00000049133 MGI:3645678 protein coding gene filaggrin family member 2
3 pseudogene 93.23492 93.23647 positive MGI_C57BL6J_5010617 Gm18432 NCBI_Gene:100417160,ENSEMBL:ENSMUSG00000102609 MGI:5010617 pseudogene predicted gene, 18432
3 gene 93.27352 93.29369 positive MGI_C57BL6J_95553 Flg NCBI_Gene:14246,ENSEMBL:ENSMUSG00000102439 MGI:95553 protein coding gene filaggrin
3 pseudogene 93.27807 93.27915 positive MGI_C57BL6J_3648599 Rplp0-ps1 NCBI_Gene:668300,ENSEMBL:ENSMUSG00000081640 MGI:3648599 pseudogene ribosomal protein, large, P0, pseudogene 1
3 pseudogene 93.30501 93.30547 positive MGI_C57BL6J_5611150 Gm37922 ENSEMBL:ENSMUSG00000102485 MGI:5611150 pseudogene predicted gene, 37922
3 gene 93.30647 93.30901 positive MGI_C57BL6J_5611141 Gm37913 ENSEMBL:ENSMUSG00000103273 MGI:5611141 unclassified gene predicted gene, 37913
3 gene 93.30647 93.46536 negative MGI_C57BL6J_5610473 Gm37245 ENSEMBL:ENSMUSG00000102476 MGI:5610473 lncRNA gene predicted gene, 37245
3 gene 93.31954 93.33357 positive MGI_C57BL6J_3046938 Hrnr NCBI_Gene:68723,ENSEMBL:ENSMUSG00000041991 MGI:3046938 protein coding gene hornerin
3 gene 93.38869 93.38883 positive MGI_C57BL6J_5690745 Gm44353 ENSEMBL:ENSMUSG00000106242 MGI:5690745 miRNA gene predicted gene, 44353
3 gene 93.39370 93.39490 positive MGI_C57BL6J_5611085 Gm37857 ENSEMBL:ENSMUSG00000103765 MGI:5611085 unclassified gene predicted gene, 37857
3 gene 93.39370 93.39944 positive MGI_C57BL6J_1099055 Rptn NCBI_Gene:20129,ENSEMBL:ENSMUSG00000041984 MGI:1099055 protein coding gene repetin
3 pseudogene 93.42065 93.42143 negative MGI_C57BL6J_5010481 Gm18296 NCBI_Gene:100416867,ENSEMBL:ENSMUSG00000104171 MGI:5010481 pseudogene predicted gene, 18296
3 pseudogene 93.43306 93.43396 negative MGI_C57BL6J_3643701 Gm5278 NCBI_Gene:383891,ENSEMBL:ENSMUSG00000057829 MGI:3643701 pseudogene predicted pseudogene 5278
3 gene 93.43320 93.43331 negative MGI_C57BL6J_5452529 Gm22752 ENSEMBL:ENSMUSG00000076037 MGI:5452529 miRNA gene predicted gene, 22752
3 gene 93.44233 93.44908 positive MGI_C57BL6J_2177944 Tchh NCBI_Gene:99681,ENSEMBL:ENSMUSG00000052415 MGI:2177944 protein coding gene trichohyalin
3 gene 93.46875 93.47198 positive MGI_C57BL6J_1918575 Tchhl1 NCBI_Gene:71325,ENSEMBL:ENSMUSG00000027908 MGI:1918575 protein coding gene trichohyalin-like 1
3 pseudogene 93.49981 93.50030 negative MGI_C57BL6J_5610181 Gm36953 ENSEMBL:ENSMUSG00000104135 MGI:5610181 pseudogene predicted gene, 36953
3 gene 93.52049 93.52629 positive MGI_C57BL6J_1338798 S100a11 NCBI_Gene:20195,ENSEMBL:ENSMUSG00000027907 MGI:1338798 protein coding gene S100 calcium binding protein A11
3 pseudogene 93.53051 93.53079 negative MGI_C57BL6J_5589109 Gm29950 NCBI_Gene:102631667,ENSEMBL:ENSMUSG00000103031 MGI:5589109 pseudogene predicted gene, 29950
3 gene 93.55507 93.56464 positive MGI_C57BL6J_1339468 S100a10 NCBI_Gene:20194,ENSEMBL:ENSMUSG00000041959 MGI:1339468 protein coding gene S100 calcium binding protein A10 (calpactin)
3 gene 93.59536 93.59750 negative MGI_C57BL6J_5622978 Gm40093 NCBI_Gene:105244496 MGI:5622978 lncRNA gene predicted gene, 40093
3 pseudogene 93.60517 93.60571 positive MGI_C57BL6J_5010516 Gm18331 NCBI_Gene:100416948 MGI:5010516 pseudogene predicted gene, 18331
3 pseudogene 93.62864 93.62975 negative MGI_C57BL6J_3645005 Gm5541 NCBI_Gene:433623,ENSEMBL:ENSMUSG00000103406 MGI:3645005 pseudogene predicted gene 5541
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 pseudogene 93.90814 93.91191 positive MGI_C57BL6J_3648187 Gm9116 NCBI_Gene:668344,ENSEMBL:ENSMUSG00000102933 MGI:3648187 pseudogene predicted gene 9116
3 pseudogene 93.91284 93.91325 positive MGI_C57BL6J_5610413 Gm37185 ENSEMBL:ENSMUSG00000102769 MGI:5610413 pseudogene predicted gene, 37185
3 gene 93.93663 93.94354 negative MGI_C57BL6J_3704095 Gm9117 NCBI_Gene:668346,ENSEMBL:ENSMUSG00000095822 MGI:3704095 protein coding gene predicted pseudogene 9117
3 pseudogene 93.95807 93.95827 positive MGI_C57BL6J_5610332 Gm37104 ENSEMBL:ENSMUSG00000102445 MGI:5610332 pseudogene predicted gene, 37104
3 gene 93.96029 93.96131 negative MGI_C57BL6J_3027905 Tdpoz5 NCBI_Gene:399676,ENSEMBL:ENSMUSG00000094163 MGI:3027905 protein coding gene TD and POZ domain containing 5
3 pseudogene 93.96914 93.96933 positive MGI_C57BL6J_5611035 Gm37807 ENSEMBL:ENSMUSG00000103841 MGI:5611035 pseudogene predicted gene, 37807
3 pseudogene 93.97771 93.97811 negative MGI_C57BL6J_5610709 Gm37481 ENSEMBL:ENSMUSG00000102804 MGI:5610709 pseudogene predicted gene, 37481
3 pseudogene 93.97904 93.98283 negative MGI_C57BL6J_3644976 Gm9121 NCBI_Gene:668353,ENSEMBL:ENSMUSG00000104460 MGI:3644976 pseudogene predicted pseudogene 9121
3 pseudogene 94.00828 94.01139 positive MGI_C57BL6J_3644979 Gm9124 NCBI_Gene:668356,ENSEMBL:ENSMUSG00000104059 MGI:3644979 pseudogene predicted pseudogene 9124
3 pseudogene 94.01277 94.01296 negative MGI_C57BL6J_5610313 Gm37085 ENSEMBL:ENSMUSG00000102857 MGI:5610313 pseudogene predicted gene, 37085
3 gene 94.04798 94.05488 negative MGI_C57BL6J_3702970 Tdpoz9 NCBI_Gene:668359,ENSEMBL:ENSMUSG00000094328 MGI:3702970 protein coding gene TD and POZ domain containing 9
3 pseudogene 94.06940 94.06960 positive MGI_C57BL6J_5610309 Gm37081 ENSEMBL:ENSMUSG00000102655 MGI:5610309 pseudogene predicted gene, 37081
3 gene 94.07162 94.07264 negative MGI_C57BL6J_3710527 Tdpoz7 NCBI_Gene:100042761,ENSEMBL:ENSMUSG00000095251 MGI:3710527 protein coding gene Td and POZ domain containing 7
3 pseudogene 94.07991 94.08010 positive MGI_C57BL6J_5611006 Gm37778 ENSEMBL:ENSMUSG00000102696 MGI:5611006 pseudogene predicted gene, 37778
3 pseudogene 94.08848 94.08888 negative MGI_C57BL6J_5610383 Gm37155 ENSEMBL:ENSMUSG00000103239 MGI:5610383 pseudogene predicted gene, 37155
3 pseudogene 94.08982 94.09360 negative MGI_C57BL6J_3779496 Gm5542 NCBI_Gene:433624,ENSEMBL:ENSMUSG00000102462 MGI:3779496 pseudogene predicted gene 5542
3 pseudogene 94.11833 94.12144 positive MGI_C57BL6J_3648392 Gm9131 NCBI_Gene:668367,ENSEMBL:ENSMUSG00000104338 MGI:3648392 pseudogene predicted gene 9131
3 pseudogene 94.12282 94.12301 negative MGI_C57BL6J_5611110 Gm37882 ENSEMBL:ENSMUSG00000102949 MGI:5611110 pseudogene predicted gene, 37882
3 pseudogene 94.15763 94.15872 negative MGI_C57BL6J_3645007 Gm5543 NCBI_Gene:433625,ENSEMBL:ENSMUSG00000102311 MGI:3645007 pseudogene predicted gene 5543
3 pseudogene 94.16655 94.16674 positive MGI_C57BL6J_5610229 Gm37001 ENSEMBL:ENSMUSG00000102285 MGI:5610229 pseudogene predicted gene, 37001
3 pseudogene 94.16696 94.16985 negative MGI_C57BL6J_5434310 Gm20955 NCBI_Gene:100418020 MGI:5434310 pseudogene predicted gene, 20955
3 pseudogene 94.17308 94.17348 negative MGI_C57BL6J_4414980 Gm16560 ENSEMBL:ENSMUSG00000089826 MGI:4414980 pseudogene predicted gene 16560
3 gene 94.17441 94.17819 negative MGI_C57BL6J_3702972 Spopfm2 NCBI_Gene:100043188,ENSEMBL:ENSMUSG00000074424 MGI:3702972 protein coding gene speckle-type BTB/POZ protein family member 2
3 gene 94.19671 94.19983 positive MGI_C57BL6J_3644284 Spopfm3 NCBI_Gene:383977,ENSEMBL:ENSMUSG00000090268 MGI:3644284 protein coding gene speckle-type BTB/POZ protein family member 3
3 pseudogene 94.20121 94.20140 negative MGI_C57BL6J_4415004 Gm16584 ENSEMBL:ENSMUSG00000090111 MGI:4415004 pseudogene predicted gene 16584
3 pseudogene 94.23670 94.23780 negative MGI_C57BL6J_3646925 Gm4982 NCBI_Gene:245290,ENSEMBL:ENSMUSG00000089689 MGI:3646925 pseudogene predicted gene 4982
3 pseudogene 94.24244 94.24347 negative MGI_C57BL6J_3643267 Gm9141 NCBI_Gene:668385,ENSEMBL:ENSMUSG00000089893 MGI:3643267 pseudogene predicted gene 9141
3 gene 94.26404 94.26718 positive MGI_C57BL6J_3643869 Spopfm1 NCBI_Gene:212727,ENSEMBL:ENSMUSG00000089696 MGI:3643869 protein coding gene speckle-type BTB/POZ protein family member 1
3 pseudogene 94.27523 94.27542 negative MGI_C57BL6J_4414981 Gm16561 ENSEMBL:ENSMUSG00000089891 MGI:4414981 pseudogene predicted gene 16561
3 gene 94.27797 94.30999 negative MGI_C57BL6J_5595169 Gm36010 NCBI_Gene:102639779 MGI:5595169 lncRNA gene predicted gene, 36010
3 gene 94.31009 94.33254 positive MGI_C57BL6J_1923028 Them4 NCBI_Gene:75778,ENSEMBL:ENSMUSG00000028145 MGI:1923028 protein coding gene thioesterase superfamily member 4
3 pseudogene 94.33439 94.33533 negative MGI_C57BL6J_5663880 Gm43743 ENSEMBL:ENSMUSG00000105506 MGI:5663880 pseudogene predicted gene 43743
3 gene 94.34210 94.34735 positive MGI_C57BL6J_1913448 Them5 NCBI_Gene:66198,ENSEMBL:ENSMUSG00000028148 MGI:1913448 protein coding gene thioesterase superfamily member 5
3 gene 94.35651 94.36084 negative MGI_C57BL6J_5595229 Gm36070 ENSEMBL:ENSMUSG00000105708 MGI:5595229 lncRNA gene predicted gene, 36070
3 gene 94.36244 94.36457 positive MGI_C57BL6J_2685505 C2cd4d NCBI_Gene:271944,ENSEMBL:ENSMUSG00000091648 MGI:2685505 protein coding gene C2 calcium-dependent domain containing 4D
3 gene 94.36553 94.37725 negative MGI_C57BL6J_5621296 Gm38411 NCBI_Gene:329711,ENSEMBL:ENSMUSG00000104669 MGI:5621296 lncRNA gene predicted gene, 38411
3 gene 94.37272 94.39828 positive MGI_C57BL6J_104856 Rorc NCBI_Gene:19885,ENSEMBL:ENSMUSG00000028150 MGI:104856 protein coding gene RAR-related orphan receptor gamma
3 gene 94.39297 94.40285 negative MGI_C57BL6J_5663538 Gm43401 ENSEMBL:ENSMUSG00000105391 MGI:5663538 lncRNA gene predicted gene 43401
3 gene 94.39852 94.40450 positive MGI_C57BL6J_2444651 Lingo4 NCBI_Gene:320747,ENSEMBL:ENSMUSG00000044505 MGI:2444651 protein coding gene leucine rich repeat and Ig domain containing 4
3 gene 94.40939 94.41294 negative MGI_C57BL6J_1923852 1700040D17Rik NCBI_Gene:76602,ENSEMBL:ENSMUSG00000097515 MGI:1923852 lncRNA gene RIKEN cDNA 1700040D17 gene
3 gene 94.41314 94.43485 positive MGI_C57BL6J_1919884 Tdrkh NCBI_Gene:72634,ENSEMBL:ENSMUSG00000041912 MGI:1919884 protein coding gene tudor and KH domain containing protein
3 gene 94.41340 94.41829 positive MGI_C57BL6J_5662600 Gm42463 ENSEMBL:ENSMUSG00000106032 MGI:5662600 lncRNA gene predicted gene 42463
3 pseudogene 94.42166 94.42243 negative MGI_C57BL6J_5662601 Gm42464 ENSEMBL:ENSMUSG00000104756 MGI:5662601 pseudogene predicted gene 42464
3 gene 94.43241 94.44392 negative MGI_C57BL6J_1858170 Oaz3 NCBI_Gene:53814,ENSEMBL:ENSMUSG00000028141 MGI:1858170 protein coding gene ornithine decarboxylase antizyme 3
3 gene 94.44315 94.45113 positive MGI_C57BL6J_2137211 Mrpl9 NCBI_Gene:78523,ENSEMBL:ENSMUSG00000028140 MGI:2137211 protein coding gene mitochondrial ribosomal protein L9
3 pseudogene 94.44854 94.45407 positive MGI_C57BL6J_5589182 Gm30023 NCBI_Gene:102631769,ENSEMBL:ENSMUSG00000104695 MGI:5589182 pseudogene predicted gene, 30023
3 gene 94.46498 94.48034 negative MGI_C57BL6J_1913603 Riiad1 NCBI_Gene:66353,ENSEMBL:ENSMUSG00000028139 MGI:1913603 protein coding gene regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1
3 gene 94.47828 94.49220 positive MGI_C57BL6J_1926034 Celf3 NCBI_Gene:78784,ENSEMBL:ENSMUSG00000028137 MGI:1926034 protein coding gene CUGBP, Elav-like family member 3
3 gene 94.48334 94.48399 negative MGI_C57BL6J_5826450 Gm46813 NCBI_Gene:108168881 MGI:5826450 lncRNA gene predicted gene, 46813
3 gene 94.49754 94.58272 negative MGI_C57BL6J_1923992 Snx27 NCBI_Gene:76742,ENSEMBL:ENSMUSG00000028136 MGI:1923992 protein coding gene sorting nexin family member 27
3 gene 94.53381 94.53597 negative MGI_C57BL6J_5663910 Gm43773 ENSEMBL:ENSMUSG00000106061 MGI:5663910 lncRNA gene predicted gene 43773
3 gene 94.53661 94.53749 negative MGI_C57BL6J_5663911 Gm43774 ENSEMBL:ENSMUSG00000104631 MGI:5663911 lncRNA gene predicted gene 43774
3 gene 94.57578 94.57703 negative MGI_C57BL6J_5663905 Gm43768 ENSEMBL:ENSMUSG00000105412 MGI:5663905 lncRNA gene predicted gene 43768
3 pseudogene 94.58947 94.58966 positive MGI_C57BL6J_3705756 Gm15235 ENSEMBL:ENSMUSG00000105522 MGI:3705756 pseudogene predicted gene 15235
3 pseudogene 94.60438 94.60485 negative MGI_C57BL6J_3646595 Rpl31-ps11 NCBI_Gene:668409,ENSEMBL:ENSMUSG00000062896 MGI:3646595 pseudogene ribosomal protein L31, pseudogene 11
3 gene 94.61275 94.65887 negative MGI_C57BL6J_109572 Tuft1 NCBI_Gene:22156,ENSEMBL:ENSMUSG00000005968 MGI:109572 protein coding gene tuftelin 1
3 gene 94.64310 94.64360 positive MGI_C57BL6J_3779183 Gm10972 ENSEMBL:ENSMUSG00000118474 MGI:3779183 protein coding gene predicted gene 10972
3 gene 94.65896 94.66012 positive MGI_C57BL6J_3705137 Gm15234 ENSEMBL:ENSMUSG00000085250 MGI:3705137 lncRNA gene predicted gene 15234
3 pseudogene 94.66059 94.67070 negative MGI_C57BL6J_3615512 BC021767 NCBI_Gene:545551,ENSEMBL:ENSMUSG00000085006 MGI:3615512 pseudogene cDNA sequence BC021767
3 gene 94.67721 94.68467 positive MGI_C57BL6J_5826451 Gm46814 NCBI_Gene:108168882 MGI:5826451 lncRNA gene predicted gene, 46814
3 gene 94.69356 94.70441 positive MGI_C57BL6J_104859 Selenbp2 NCBI_Gene:20342,ENSEMBL:ENSMUSG00000068877 MGI:104859 protein coding gene selenium binding protein 2
3 pseudogene 94.72002 94.75818 negative MGI_C57BL6J_3705845 Gm15264 NCBI_Gene:100042801,ENSEMBL:ENSMUSG00000081355 MGI:3705845 pseudogene predicted gene 15264
3 pseudogene 94.73734 94.73771 positive MGI_C57BL6J_5663848 Gm43711 ENSEMBL:ENSMUSG00000104881 MGI:5663848 pseudogene predicted gene 43711
3 gene 94.76007 94.78772 negative MGI_C57BL6J_1927237 Cgn NCBI_Gene:70737,ENSEMBL:ENSMUSG00000068876 MGI:1927237 protein coding gene cingulin
3 gene 94.82085 94.82231 positive MGI_C57BL6J_5622979 Gm40094 NCBI_Gene:105244497 MGI:5622979 lncRNA gene predicted gene, 40094
3 gene 94.82311 94.88357 positive MGI_C57BL6J_2442117 Pogz NCBI_Gene:229584,ENSEMBL:ENSMUSG00000038902 MGI:2442117 protein coding gene pogo transposable element with ZNF domain
3 pseudogene 94.83298 94.83380 positive MGI_C57BL6J_3705753 Gm15263 NCBI_Gene:100417859,ENSEMBL:ENSMUSG00000084058 MGI:3705753 pseudogene predicted gene 15263
3 gene 94.88409 94.88696 negative MGI_C57BL6J_1098257 Psmb4 NCBI_Gene:19172,ENSEMBL:ENSMUSG00000005779 MGI:1098257 protein coding gene proteasome (prosome, macropain) subunit, beta type 4
3 gene 94.91796 94.92300 positive MGI_C57BL6J_5595396 Gm36237 NCBI_Gene:102640082 MGI:5595396 lncRNA gene predicted gene, 36237
3 gene 94.92032 94.92042 negative MGI_C57BL6J_5456056 Gm26279 ENSEMBL:ENSMUSG00000087720 MGI:5456056 snRNA gene predicted gene, 26279
3 gene 94.93306 94.94476 positive MGI_C57BL6J_96825 Selenbp1 NCBI_Gene:20341,ENSEMBL:ENSMUSG00000068874 MGI:96825 protein coding gene selenium binding protein 1
3 gene 94.95307 94.96156 positive MGI_C57BL6J_1858421 Rfx5 NCBI_Gene:53970,ENSEMBL:ENSMUSG00000005774 MGI:1858421 protein coding gene regulatory factor X, 5 (influences HLA class II expression)
3 gene 94.95331 94.95369 positive MGI_C57BL6J_1922445 4930532J02Rik NA NA unclassified gene RIKEN cDNA 4930532J02 gene
3 gene 94.95903 94.97492 negative MGI_C57BL6J_1925930 B230398E01Rik NCBI_Gene:109334,ENSEMBL:ENSMUSG00000087660 MGI:1925930 lncRNA gene RIKEN cDNA B230398E01 gene
3 gene 94.97473 95.00694 positive MGI_C57BL6J_1334433 Pi4kb NCBI_Gene:107650,ENSEMBL:ENSMUSG00000038861 MGI:1334433 protein coding gene phosphatidylinositol 4-kinase beta
3 gene 94.99441 94.99735 negative MGI_C57BL6J_2442973 A730011C13Rik ENSEMBL:ENSMUSG00000084846 MGI:2442973 lncRNA gene RIKEN cDNA A730011C13 gene
3 gene 94.99467 95.01545 negative MGI_C57BL6J_1925516 Zfp687 NCBI_Gene:78266,ENSEMBL:ENSMUSG00000019338 MGI:1925516 protein coding gene zinc finger protein 687
3 gene 94.99880 95.00487 negative MGI_C57BL6J_3705193 Gm15265 ENSEMBL:ENSMUSG00000086288 MGI:3705193 lncRNA gene predicted gene 15265
3 gene 95.00417 95.00424 positive MGI_C57BL6J_5530870 Mir7013 miRBase:MI0022862,NCBI_Gene:102465613,ENSEMBL:ENSMUSG00000099033 MGI:5530870 miRNA gene microRNA 7013
3 gene 95.01562 95.02198 positive MGI_C57BL6J_1922187 4930481B07Rik NCBI_Gene:108168883,ENSEMBL:ENSMUSG00000085956 MGI:1922187 lncRNA gene RIKEN cDNA 4930481B07 gene
3 gene 95.03269 95.04261 negative MGI_C57BL6J_1201670 Psmd4 NCBI_Gene:19185,ENSEMBL:ENSMUSG00000005625 MGI:1201670 protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
3 gene 95.04233 95.04293 positive MGI_C57BL6J_1923891 1700123N01Rik NA NA unclassified gene RIKEN cDNA 1700123N01 gene
3 gene 95.05853 95.10693 negative MGI_C57BL6J_107929 Pip5k1a NCBI_Gene:18720,ENSEMBL:ENSMUSG00000028126 MGI:107929 protein coding gene phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
3 gene 95.09063 95.09071 negative MGI_C57BL6J_5454697 Gm24920 ENSEMBL:ENSMUSG00000064952 MGI:5454697 snoRNA gene predicted gene, 24920
3 pseudogene 95.09704 95.09737 negative MGI_C57BL6J_5622980 Gm40095 NCBI_Gene:105244498 MGI:5622980 pseudogene predicted gene, 40095
3 gene 95.09950 95.09961 positive MGI_C57BL6J_5452078 Gm22301 ENSEMBL:ENSMUSG00000064590 MGI:5452078 snRNA gene predicted gene, 22301
3 gene 95.11102 95.12305 positive MGI_C57BL6J_1202305 Vps72 NCBI_Gene:21427,ENSEMBL:ENSMUSG00000008958 MGI:1202305 protein coding gene vacuolar protein sorting 72
3 gene 95.12280 95.12921 positive MGI_C57BL6J_1355285 Tmod4 NCBI_Gene:50874,ENSEMBL:ENSMUSG00000005628 MGI:1355285 protein coding gene tropomodulin 4
3 gene 95.12954 95.13405 negative MGI_C57BL6J_1341284 Scnm1 NCBI_Gene:69269,ENSEMBL:ENSMUSG00000092607 MGI:1341284 protein coding gene sodium channel modifier 1
3 gene 95.13409 95.13953 positive MGI_C57BL6J_1919409 Lysmd1 NCBI_Gene:217779,ENSEMBL:ENSMUSG00000053769 MGI:1919409 protein coding gene LysM, putative peptidoglycan-binding, domain containing 1
3 gene 95.13906 95.13919 negative MGI_C57BL6J_5531299 Mir8099-1 miRBase:MI0026027,NCBI_Gene:102465890,ENSEMBL:ENSMUSG00000098498 MGI:5531299 miRNA gene microRNA 8099-1
3 gene 95.13952 95.14245 negative MGI_C57BL6J_1917019 Tnfaip8l2 NCBI_Gene:69769,ENSEMBL:ENSMUSG00000013707 MGI:1917019 protein coding gene tumor necrosis factor, alpha-induced protein 8-like 2
3 pseudogene 95.14298 95.14515 positive MGI_C57BL6J_3648561 Gm9169 NCBI_Gene:668436,ENSEMBL:ENSMUSG00000098198 MGI:3648561 pseudogene predicted gene 9169
3 gene 95.16042 95.17405 positive MGI_C57BL6J_1338032 Sema6c NCBI_Gene:20360,ENSEMBL:ENSMUSG00000038777 MGI:1338032 protein coding gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
3 gene 95.18177 95.21808 negative MGI_C57BL6J_95612 Gabpb2 NCBI_Gene:213054,ENSEMBL:ENSMUSG00000038766 MGI:95612 protein coding gene GA repeat binding protein, beta 2
3 gene 95.21746 95.22666 positive MGI_C57BL6J_4439664 Gm16740 NCBI_Gene:100504029,ENSEMBL:ENSMUSG00000097167 MGI:4439664 lncRNA gene predicted gene, 16740
3 gene 95.21854 95.23220 negative MGI_C57BL6J_1929671 Mllt11 NCBI_Gene:56772,ENSEMBL:ENSMUSG00000053192 MGI:1929671 protein coding gene myeloid/lymphoid or mixed-lineage leukemia, translocated to, 11
3 gene 95.22842 95.23642 positive MGI_C57BL6J_1889510 Cdc42se1 NCBI_Gene:57912,ENSEMBL:ENSMUSG00000046722 MGI:1889510 protein coding gene CDC42 small effector 1
3 gene 95.23692 95.24160 negative MGI_C57BL6J_2684974 Gm128 NCBI_Gene:229588,ENSEMBL:ENSMUSG00000068860 MGI:2684974 protein coding gene predicted gene 128
3 gene 95.24127 95.25119 negative MGI_C57BL6J_2384749 Bnipl NCBI_Gene:171388,ENSEMBL:ENSMUSG00000028115 MGI:2384749 protein coding gene BCL2/adenovirus E1B 19kD interacting protein like
3 gene 95.25367 95.28208 negative MGI_C57BL6J_1925152 Prune1 NCBI_Gene:229589,ENSEMBL:ENSMUSG00000015711 MGI:1925152 protein coding gene prune exopolyphosphatase
3 gene 95.28135 95.29617 positive MGI_C57BL6J_1922257 Mindy1 NCBI_Gene:75007,ENSEMBL:ENSMUSG00000038712 MGI:1922257 protein coding gene MINDY lysine 48 deubiquitinase 1
3 gene 95.29609 95.31489 negative MGI_C57BL6J_1923711 Anxa9 NCBI_Gene:71790,ENSEMBL:ENSMUSG00000015702 MGI:1923711 protein coding gene annexin A9
3 gene 95.30708 95.31513 negative MGI_C57BL6J_1923443 6330562C20Rik ENSEMBL:ENSMUSG00000093424 MGI:1923443 lncRNA gene RIKEN cDNA 6330562C20 gene
3 gene 95.31479 95.32360 positive MGI_C57BL6J_1924143 Cers2 NCBI_Gene:76893,ENSEMBL:ENSMUSG00000015714 MGI:1924143 protein coding gene ceramide synthase 2
3 gene 95.32353 95.35720 negative MGI_C57BL6J_1934229 Setdb1 NCBI_Gene:84505,ENSEMBL:ENSMUSG00000015697 MGI:1934229 protein coding gene SET domain, bifurcated 1
3 pseudogene 95.35278 95.35298 positive MGI_C57BL6J_5662715 Gm42578 ENSEMBL:ENSMUSG00000105860 MGI:5662715 pseudogene predicted gene 42578
3 gene 95.35613 95.35757 positive MGI_C57BL6J_5610728 Gm37500 NCBI_Gene:108168884,ENSEMBL:ENSMUSG00000103900 MGI:5610728 protein coding gene predicted gene, 37500
3 gene 95.38646 95.40284 negative MGI_C57BL6J_1914904 4930558C23Rik NCBI_Gene:67654,ENSEMBL:ENSMUSG00000105734 MGI:1914904 protein coding gene RIKEN cDNA 4930558C23 gene
3 pseudogene 95.41030 95.41124 negative MGI_C57BL6J_3643219 Gm5070 NCBI_Gene:277589,ENSEMBL:ENSMUSG00000096177 MGI:3643219 pseudogene predicted gene 5070
3 pseudogene 95.41498 95.41545 negative MGI_C57BL6J_3647108 Gm9173 NCBI_Gene:101055724,ENSEMBL:ENSMUSG00000104646 MGI:3647108 pseudogene predicted gene 9173
3 pseudogene 95.42735 95.43109 positive MGI_C57BL6J_3782533 Gm4349 NCBI_Gene:100043305,ENSEMBL:ENSMUSG00000097532 MGI:3782533 pseudogene predicted gene 4349
3 gene 95.43437 95.49724 positive MGI_C57BL6J_88071 Arnt NCBI_Gene:11863,ENSEMBL:ENSMUSG00000015522 MGI:88071 protein coding gene aryl hydrocarbon receptor nuclear translocator
3 pseudogene 95.46119 95.46154 positive MGI_C57BL6J_5662809 Gm42672 ENSEMBL:ENSMUSG00000105395 MGI:5662809 pseudogene predicted gene 42672
3 gene 95.49921 95.50939 positive MGI_C57BL6J_107823 Ctsk NCBI_Gene:13038,ENSEMBL:ENSMUSG00000028111 MGI:107823 protein coding gene cathepsin K
3 gene 95.52321 95.52450 negative MGI_C57BL6J_5622981 Gm40096 NCBI_Gene:105244499 MGI:5622981 lncRNA gene predicted gene, 40096
3 gene 95.52679 95.55640 positive MGI_C57BL6J_107341 Ctss NCBI_Gene:13040,ENSEMBL:ENSMUSG00000038642 MGI:107341 protein coding gene cathepsin S
3 pseudogene 95.53041 95.53104 positive MGI_C57BL6J_3776505 Hmgb1-ps5 NCBI_Gene:100043312,ENSEMBL:ENSMUSG00000083822 MGI:3776505 pseudogene high mobility group box 1, pseudogene 5
3 gene 95.55964 95.58786 positive MGI_C57BL6J_1915231 Hormad1 NCBI_Gene:67981,ENSEMBL:ENSMUSG00000028109 MGI:1915231 protein coding gene HORMA domain containing 1
3 gene 95.58588 95.58883 negative MGI_C57BL6J_5622982 Gm40097 NCBI_Gene:105244500 MGI:5622982 lncRNA gene predicted gene, 40097
3 gene 95.58892 95.61925 positive MGI_C57BL6J_1917129 Golph3l NCBI_Gene:229593,ENSEMBL:ENSMUSG00000046519 MGI:1917129 protein coding gene golgi phosphoprotein 3-like
3 gene 95.58897 95.59057 positive MGI_C57BL6J_5662808 Gm42671 ENSEMBL:ENSMUSG00000105460 MGI:5662808 unclassified gene predicted gene 42671
3 pseudogene 95.62224 95.62281 positive MGI_C57BL6J_3644167 Rps10-ps1 NCBI_Gene:668457,ENSEMBL:ENSMUSG00000060438 MGI:3644167 pseudogene ribosomal protein S10, pseudogene 1
3 gene 95.62498 95.63212 positive MGI_C57BL6J_1891189 Ensa NCBI_Gene:56205,ENSEMBL:ENSMUSG00000038619 MGI:1891189 protein coding gene endosulfine alpha
3 gene 95.63930 95.64105 positive MGI_C57BL6J_3026962 E330034L11Rik ENSEMBL:ENSMUSG00000106383 MGI:3026962 unclassified gene RIKEN cDNA E330034L11 gene
3 gene 95.65841 95.66318 positive MGI_C57BL6J_101769 Mcl1 NCBI_Gene:17210,ENSEMBL:ENSMUSG00000038612 MGI:101769 protein coding gene myeloid cell leukemia sequence 1
3 gene 95.67620 95.68813 negative MGI_C57BL6J_2389008 Adamtsl4 NCBI_Gene:229595,ENSEMBL:ENSMUSG00000015850 MGI:2389008 protein coding gene ADAMTS-like 4
3 gene 95.73415 95.73987 negative MGI_C57BL6J_103060 Ecm1 NCBI_Gene:13601,ENSEMBL:ENSMUSG00000028108 MGI:103060 protein coding gene extracellular matrix protein 1
3 gene 95.73491 95.73497 negative MGI_C57BL6J_5531219 Mir7014 miRBase:MI0022863,NCBI_Gene:102466787,ENSEMBL:ENSMUSG00000098737 MGI:5531219 miRNA gene microRNA 7014
3 gene 95.73997 95.76021 negative MGI_C57BL6J_1919057 Tars2 NCBI_Gene:71807,ENSEMBL:ENSMUSG00000028107 MGI:1919057 protein coding gene threonyl-tRNA synthetase 2, mitochondrial (putative)
3 gene 95.75987 95.81979 negative MGI_C57BL6J_1922387 Rprd2 NCBI_Gene:75137,ENSEMBL:ENSMUSG00000028106 MGI:1922387 protein coding gene regulation of nuclear pre-mRNA domain containing 2
3 pseudogene 95.78072 95.78087 positive MGI_C57BL6J_5663573 Gm43436 ENSEMBL:ENSMUSG00000104967 MGI:5663573 pseudogene predicted gene 43436
3 gene 95.79670 95.79688 negative MGI_C57BL6J_5456138 Gm26361 ENSEMBL:ENSMUSG00000089493 MGI:5456138 snRNA gene predicted gene, 26361
3 pseudogene 95.80482 95.80652 positive MGI_C57BL6J_5010000 Gm17815 NCBI_Gene:100306934,ENSEMBL:ENSMUSG00000105093 MGI:5010000 pseudogene predicted gene, 17815
3 gene 95.81905 95.82190 positive MGI_C57BL6J_5589107 Gm29948 NCBI_Gene:102631665 MGI:5589107 lncRNA gene predicted gene, 29948
3 gene 95.83012 95.85680 negative MGI_C57BL6J_1918017 Prpf3 NCBI_Gene:70767,ENSEMBL:ENSMUSG00000015748 MGI:1918017 protein coding gene pre-mRNA processing factor 3
3 gene 95.85597 95.86149 positive MGI_C57BL6J_5477088 Gm26594 ENSEMBL:ENSMUSG00000097189 MGI:5477088 lncRNA gene predicted gene, 26594
3 gene 95.86263 95.87155 negative MGI_C57BL6J_1913542 Mrps21 NCBI_Gene:66292,ENSEMBL:ENSMUSG00000054312 MGI:1913542 protein coding gene mitochondrial ribosomal protein S21
3 gene 95.87152 95.88909 positive MGI_C57BL6J_1923991 C920021L13Rik NCBI_Gene:100042889,ENSEMBL:ENSMUSG00000080727 MGI:1923991 lncRNA gene RIKEN cDNA C920021L13 gene
3 gene 95.87850 95.88225 negative MGI_C57BL6J_2684975 Ciart NCBI_Gene:229599,ENSEMBL:ENSMUSG00000038550 MGI:2684975 protein coding gene circadian associated repressor of transcription
3 gene 95.88395 95.89295 negative MGI_C57BL6J_2385885 BC028528 NCBI_Gene:229600,ENSEMBL:ENSMUSG00000038543 MGI:2385885 protein coding gene cDNA sequence BC028528
3 gene 95.89392 95.89859 positive MGI_C57BL6J_2385110 Aph1a NCBI_Gene:226548,ENSEMBL:ENSMUSG00000015750 MGI:2385110 protein coding gene aph1 homolog A, gamma secretase subunit
3 gene 95.89777 95.90512 negative MGI_C57BL6J_1344341 Car14 NCBI_Gene:23831,ENSEMBL:ENSMUSG00000038526 MGI:1344341 protein coding gene carbonic anhydrase 14
3 gene 95.92588 95.92902 negative MGI_C57BL6J_5826452 Gm46815 NCBI_Gene:108168885 MGI:5826452 lncRNA gene predicted gene, 46815
3 gene 95.92924 95.94739 positive MGI_C57BL6J_1913721 Anp32e NCBI_Gene:66471,ENSEMBL:ENSMUSG00000015749 MGI:1913721 protein coding gene acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
3 gene 95.94009 95.94257 positive MGI_C57BL6J_5663512 Gm43375 ENSEMBL:ENSMUSG00000106262 MGI:5663512 unclassified gene predicted gene 43375
3 pseudogene 95.96403 95.96439 negative MGI_C57BL6J_5434296 Gm20940 ENSEMBL:ENSMUSG00000106640 MGI:5434296 pseudogene predicted gene, 20940
3 pseudogene 95.98281 95.98360 positive MGI_C57BL6J_3782273 Gm4097 NCBI_Gene:100042898 MGI:3782273 pseudogene predicted gene 4097
3 gene 95.98551 95.98697 positive MGI_C57BL6J_3646918 Gm9054 NCBI_Gene:668224 MGI:3646918 lncRNA gene predicted gene 9054
3 gene 95.98843 95.99600 negative MGI_C57BL6J_1914470 Plekho1 NCBI_Gene:67220,ENSEMBL:ENSMUSG00000015745 MGI:1914470 protein coding gene pleckstrin homology domain containing, family O member 1
3 gene 95.99592 95.99646 positive MGI_C57BL6J_3646916 Gm9052 NA NA unclassified gene predicted gene 9052
3 gene 95.99983 96.05847 negative MGI_C57BL6J_891965 Vps45 NCBI_Gene:22365,ENSEMBL:ENSMUSG00000015747 MGI:891965 protein coding gene vacuolar protein sorting 45
3 pseudogene 96.08687 96.08706 positive MGI_C57BL6J_5663691 Gm43554 ENSEMBL:ENSMUSG00000105995 MGI:5663691 pseudogene predicted gene 43554
3 gene 96.09817 96.10436 negative MGI_C57BL6J_5589203 Gm30044 NCBI_Gene:102631798 MGI:5589203 lncRNA gene predicted gene, 30044
3 gene 96.10451 96.16113 positive MGI_C57BL6J_2654703 Otud7b NCBI_Gene:229603,ENSEMBL:ENSMUSG00000038495 MGI:2654703 protein coding gene OTU domain containing 7B
3 gene 96.16195 96.17172 positive MGI_C57BL6J_2652817 Mtmr11 NCBI_Gene:194126,ENSEMBL:ENSMUSG00000045934 MGI:2652817 protein coding gene myotubularin related protein 11
3 gene 96.16746 96.17242 negative MGI_C57BL6J_4937324 Gm17690 ENSEMBL:ENSMUSG00000097204 MGI:4937324 lncRNA gene predicted gene, 17690
3 gene 96.17233 96.17756 positive MGI_C57BL6J_109580 Sf3b4 NCBI_Gene:107701,ENSEMBL:ENSMUSG00000068856 MGI:109580 protein coding gene splicing factor 3b, subunit 4
3 gene 96.17636 96.17649 positive MGI_C57BL6J_5451804 Gm22027 ENSEMBL:ENSMUSG00000084686 MGI:5451804 snoRNA gene predicted gene, 22027
3 gene 96.18115 96.19552 positive MGI_C57BL6J_1927139 Sv2a NCBI_Gene:64051,ENSEMBL:ENSMUSG00000038486 MGI:1927139 protein coding gene synaptic vesicle glycoprotein 2 a
3 gene 96.19658 96.21971 negative MGI_C57BL6J_1916418 Bola1 NCBI_Gene:69168,ENSEMBL:ENSMUSG00000015943 MGI:1916418 protein coding gene bolA-like 1 (E. coli)
3 gene 96.20963 96.22017 negative MGI_C57BL6J_3705796 Gm15444 ENSEMBL:ENSMUSG00000086556 MGI:3705796 lncRNA gene predicted gene 15444
3 gene 96.21986 96.22035 positive MGI_C57BL6J_2448314 H2ac21 NCBI_Gene:621893,ENSEMBL:ENSMUSG00000063689 MGI:2448314 protein coding gene H2A clustered histone 21
3 gene 96.22036 96.22088 negative MGI_C57BL6J_2448316 H2ac20 NCBI_Gene:319176,ENSEMBL:ENSMUSG00000068855 MGI:2448316 protein coding gene H2A clustered histone 20
3 gene 96.22050 96.22064 positive MGI_C57BL6J_5690884 Gm44492 ENSEMBL:ENSMUSG00000106431 MGI:5690884 miRNA gene predicted gene, 44492
3 gene 96.22107 96.22374 positive MGI_C57BL6J_2448415 H2bc21 NCBI_Gene:319190,ENSEMBL:ENSMUSG00000068854 MGI:2448415 protein coding gene H2B clustered histone 21
3 gene 96.23811 96.23913 negative MGI_C57BL6J_2448357 H3c15 NCBI_Gene:97114,ENSEMBL:ENSMUSG00000081058 MGI:2448357 protein coding gene H3 clustered histone 15
3 gene 96.23939 96.24182 positive MGI_C57BL6J_5313079 Gm20632 ENSEMBL:ENSMUSG00000093577 MGI:5313079 lncRNA gene predicted gene 20632
3 gene 96.23975 96.24037 negative MGI_C57BL6J_2448283 H2ac19 NCBI_Gene:319192,ENSEMBL:ENSMUSG00000063954 MGI:2448283 protein coding gene H2A clustered histone 19
3 gene 96.23987 96.24000 positive MGI_C57BL6J_6096187 Gm47311 ENSEMBL:ENSMUSG00000106587 MGI:6096187 miRNA gene predicted gene, 47311
3 gene 96.24355 96.24638 negative MGI_C57BL6J_5313080 Gm20633 ENSEMBL:ENSMUSG00000093553 MGI:5313080 lncRNA gene predicted gene 20633
3 gene 96.24550 96.24608 positive MGI_C57BL6J_96097 H2ac18 NCBI_Gene:15267,ENSEMBL:ENSMUSG00000064220 MGI:96097 protein coding gene H2A clustered histone 18
3 gene 96.24555 96.24851 positive MGI_C57BL6J_5313081 Gm20634 ENSEMBL:ENSMUSG00000070392 MGI:5313081 lncRNA gene predicted gene 20634
3 gene 96.24583 96.24596 negative MGI_C57BL6J_6096191 Gm47313 ENSEMBL:ENSMUSG00000105610 MGI:6096191 miRNA gene predicted gene, 47313
3 gene 96.24668 96.24851 positive MGI_C57BL6J_2448355 H3c14 NCBI_Gene:15077,ENSEMBL:ENSMUSG00000093769 MGI:2448355 protein coding gene H3 clustered histone 14
3 gene 96.25462 96.25775 negative MGI_C57BL6J_5313074 Gm20627 NCBI_Gene:102631874,ENSEMBL:ENSMUSG00000093507 MGI:5313074 lncRNA gene predicted gene 20627
3 gene 96.26168 96.26332 negative MGI_C57BL6J_2140113 H4c14 NCBI_Gene:97122,ENSEMBL:ENSMUSG00000091405 MGI:2140113 protein coding gene H4 clustered histone 14
3 gene 96.26378 96.26539 positive MGI_C57BL6J_5611455 Gm38227 ENSEMBL:ENSMUSG00000103940 MGI:5611455 unclassified gene predicted gene, 38227
3 gene 96.26708 96.27029 negative MGI_C57BL6J_5313075 Gm20628 ENSEMBL:ENSMUSG00000093656 MGI:5313075 lncRNA gene predicted gene 20628
3 gene 96.26865 96.26915 positive MGI_C57BL6J_2448351 H3c13 NCBI_Gene:319154,ENSEMBL:ENSMUSG00000074403 MGI:2448351 protein coding gene H3 clustered histone 13
3 gene 96.26970 96.27019 positive MGI_C57BL6J_2448413 H2bc18 NCBI_Gene:319189,ENSEMBL:ENSMUSG00000105827 MGI:2448413 protein coding gene H2B clustered histone 18
3 gene 96.26972 96.27900 positive MGI_C57BL6J_5662880 Gm42743 ENSEMBL:ENSMUSG00000050936 MGI:5662880 lncRNA gene predicted gene 42743
3 gene 96.28291 96.29397 negative MGI_C57BL6J_95498 Fcgr1 NCBI_Gene:14129,ENSEMBL:ENSMUSG00000015947 MGI:95498 protein coding gene Fc receptor, IgG, high affinity I
3 gene 96.32207 96.32215 positive MGI_C57BL6J_4413741 n-TNgtt4 NCBI_Gene:102467475 MGI:4413741 tRNA gene nuclear encoded tRNA asparagine 4 (anticodon GTT)
3 gene 96.32842 96.32859 positive MGI_C57BL6J_5454607 Gm24830 ENSEMBL:ENSMUSG00000095701 MGI:5454607 snRNA gene predicted gene, 24830
3 gene 96.33274 96.33281 positive MGI_C57BL6J_4414101 n-TVcac10 NCBI_Gene:102467407 MGI:4414101 tRNA gene nuclear encoded tRNA valine 10 (anticodon CAC)
3 gene 96.33461 96.33469 negative MGI_C57BL6J_4413742 n-TNgtt5 NCBI_Gene:102467256 MGI:4413742 tRNA gene nuclear encoded tRNA asparagine 5 (anticodon GTT)
3 gene 96.34116 96.34123 negative MGI_C57BL6J_4413829 n-TQctg5 NCBI_Gene:102467292 MGI:4413829 tRNA gene nuclear encoded tRNA glutamine 5 (anticodon CTG)
3 gene 96.34529 96.35881 positive MGI_C57BL6J_4937214 Platr30 NCBI_Gene:100504145,ENSEMBL:ENSMUSG00000097851 MGI:4937214 lncRNA gene pluripotency associated transcript 30
3 gene 96.34668 96.34675 positive MGI_C57BL6J_4413854 n-TEttc3 NCBI_Gene:102467302 MGI:4413854 tRNA gene nuclear encoded tRNA glutamic acid 3 (anticodon TTC)
3 gene 96.34863 96.35715 negative MGI_C57BL6J_5477047 Gm26553 NCBI_Gene:74690,ENSEMBL:ENSMUSG00000097807 MGI:5477047 lncRNA gene predicted gene, 26553
3 gene 96.35117 96.35124 negative MGI_C57BL6J_4413866 n-TGccc5 NCBI_Gene:102467528 MGI:4413866 tRNA gene nuclear encoded tRNA glycine 5 (anticodon CCC)
3 gene 96.35995 96.36012 negative MGI_C57BL6J_97974 Rnu1b1 NCBI_Gene:19844,ENSEMBL:ENSMUSG00000095580 MGI:97974 snRNA gene U1b1 small nuclear RNA
3 gene 96.37402 96.37418 positive MGI_C57BL6J_104624 Rnu1b2 NCBI_Gene:19845,ENSEMBL:ENSMUSG00000093834 MGI:104624 snRNA gene U1b2 small nuclear RNA
3 gene 96.37565 96.38886 negative MGI_C57BL6J_4937209 Gm17575 ENSEMBL:ENSMUSG00000097420 MGI:4937209 lncRNA gene predicted gene, 17575
3 gene 96.37698 96.38552 positive MGI_C57BL6J_5477183 Gm26689 NCBI_Gene:102632400,ENSEMBL:ENSMUSG00000097753 MGI:5477183 lncRNA gene predicted gene, 26689
3 gene 96.38291 96.38298 positive MGI_C57BL6J_4413865 n-TGccc1 NCBI_Gene:102467307 MGI:4413865 tRNA gene nuclear encoded tRNA glycine 1 (anticodon CCC)
3 gene 96.38741 96.38748 negative MGI_C57BL6J_4413855 n-TEttc2 NCBI_Gene:102467523 MGI:4413855 tRNA gene nuclear encoded tRNA glutamic acid 2 (anticodon TTC)
3 gene 96.39906 96.39913 negative MGI_C57BL6J_4413828 n-TQctg4 NCBI_Gene:102467413 MGI:4413828 tRNA gene nuclear encoded tRNA glutamine 4 (anticodon CTG)
3 gene 96.40115 96.40201 negative MGI_C57BL6J_1922199 4930477E14Rik ENSEMBL:ENSMUSG00000097539 MGI:1922199 lncRNA gene RIKEN cDNA 4930477E14 gene
3 gene 96.40222 96.40229 positive MGI_C57BL6J_4413747 n-TNgtt10 NCBI_Gene:102467258 MGI:4413747 tRNA gene nuclear encoded tRNA asparagine 10 (anticodon GTT)
3 gene 96.40238 96.40295 positive MGI_C57BL6J_5477148 Gm26654 NCBI_Gene:105244502,ENSEMBL:ENSMUSG00000097299 MGI:5477148 lncRNA gene predicted gene, 26654
3 pseudogene 96.40738 96.40946 negative MGI_C57BL6J_103115 Pafah1b1-ps1 NCBI_Gene:18473,ENSEMBL:ENSMUSG00000097041 MGI:103115 pseudogene platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit, pseudogene 1
3 gene 96.41007 96.41014 positive MGI_C57BL6J_4413896 n-THgtg6 NCBI_Gene:102467539 MGI:4413896 tRNA gene nuclear encoded tRNA histidine 6 (anticodon GTG)
3 pseudogene 96.41291 96.41336 negative MGI_C57BL6J_5439429 Gm21960 ENSEMBL:ENSMUSG00000095836 MGI:5439429 pseudogene predicted gene, 21960
3 gene 96.41444 96.41486 negative MGI_C57BL6J_109558 Terc NCBI_Gene:21748,ENSEMBL:ENSMUSG00000064796,ENSEMBL:ENSMUSG00000118406 MGI:109558 telomerase RNA gene telomerase RNA component
3 gene 96.42273 96.42290 positive MGI_C57BL6J_5453913 Gm24136 ENSEMBL:ENSMUSG00000095513 MGI:5453913 snRNA gene predicted gene, 24136
3 gene 96.42403 96.42410 negative MGI_C57BL6J_4413867 n-TGccc6 NCBI_Gene:102467308 MGI:4413867 tRNA gene nuclear encoded tRNA glycine 6 (anticodon CCC)
3 gene 96.42824 96.42831 positive MGI_C57BL6J_4413962 n-TKctt15 NCBI_Gene:102467347 MGI:4413962 tRNA gene nuclear encoded tRNA lysine 15 (anticodon CTT)
3 gene 96.43379 96.45231 negative MGI_C57BL6J_3618860 BC107364 NCBI_Gene:329716,ENSEMBL:ENSMUSG00000046317 MGI:3618860 protein coding gene cDNA sequence BC107364
3 gene 96.43597 96.43604 positive MGI_C57BL6J_4413892 n-THgtg2 NCBI_Gene:22053 MGI:4413892 tRNA gene nuclear encoded tRNA histidine 2 (anticodon GTG)
3 gene 96.44994 96.45164 positive MGI_C57BL6J_5456009 Gm26232 NCBI_Gene:102632589,ENSEMBL:ENSMUSG00000096838 MGI:5456009 snRNA gene predicted gene, 26232
3 gene 96.45143 96.45150 positive MGI_C57BL6J_4413748 n-TNgtt11 NCBI_Gene:102467478 MGI:4413748 tRNA gene nuclear encoded tRNA asparagine 11 (anticodon GTT)
3 gene 96.45249 96.45257 positive MGI_C57BL6J_4413897 n-THgtg7 NCBI_Gene:102467320 MGI:4413897 tRNA gene nuclear encoded tRNA histidine 7 (anticodon GTG)
3 pseudogene 96.45454 96.45595 negative MGI_C57BL6J_3779840 Gm9207 NCBI_Gene:668500,ENSEMBL:ENSMUSG00000104642 MGI:3779840 pseudogene predicted gene 9207
3 gene 96.45807 96.45814 negative MGI_C57BL6J_4413899 n-THgtg9 NCBI_Gene:102467414 MGI:4413899 tRNA gene nuclear encoded tRNA histidine 9 (anticodon GTG)
3 gene 96.45821 96.47066 positive MGI_C57BL6J_3641752 Gm10685 NCBI_Gene:102632901,ENSEMBL:ENSMUSG00000106429 MGI:3641752 lncRNA gene predicted gene 10685
3 gene 96.45900 96.46034 negative MGI_C57BL6J_5622984 Gm40099 NCBI_Gene:105244504 MGI:5622984 lncRNA gene predicted gene, 40099
3 gene 96.45914 96.45921 negative MGI_C57BL6J_4413750 n-TNgtt13 NCBI_Gene:102467479 MGI:4413750 tRNA gene nuclear encoded tRNA asparagine 13 (anticodon GTT)
3 gene 96.46002 96.46019 negative MGI_C57BL6J_104604 Rnu1b6 NCBI_Gene:19847,ENSEMBL:ENSMUSG00000065773 MGI:104604 snRNA gene U1b6 small nuclear RNA
3 gene 96.46397 96.46404 negative MGI_C57BL6J_4413901 n-THgtg1 NCBI_Gene:102467321 MGI:4413901 tRNA gene nuclear encoded tRNA histidine 1 (anticodon GTG)
3 gene 96.46407 96.46692 negative MGI_C57BL6J_5663671 Gm43534 ENSEMBL:ENSMUSG00000106641 MGI:5663671 unclassified gene predicted gene 43534
3 gene 96.47939 96.47946 positive MGI_C57BL6J_4413827 n-TQctg3 NCBI_Gene:102467511 MGI:4413827 tRNA gene nuclear encoded tRNA glutamine 3 (anticodon CTG)
3 gene 96.48516 96.48528 positive MGI_C57BL6J_5531383 Gm28001 ENSEMBL:ENSMUSG00000098392 MGI:5531383 rRNA gene predicted gene, 28001
3 gene 96.48655 96.48672 negative MGI_C57BL6J_5455667 Gm25890 ENSEMBL:ENSMUSG00000095260 MGI:5455667 snRNA gene predicted gene, 25890
3 gene 96.48873 96.48889 positive MGI_C57BL6J_5452391 Gm22614 ENSEMBL:ENSMUSG00000094812 MGI:5452391 snRNA gene predicted gene, 22614
3 gene 96.49778 96.49785 positive MGI_C57BL6J_4413749 n-TNgtt12 NCBI_Gene:102467259 MGI:4413749 tRNA gene nuclear encoded tRNA asparagine 12 (anticodon GTT)
3 gene 96.49951 96.49958 negative MGI_C57BL6J_4413963 n-TKctt16 NCBI_Gene:102467567 MGI:4413963 tRNA gene nuclear encoded tRNA lysine 16 (anticodon CTT)
3 gene 96.50037 96.50044 negative MGI_C57BL6J_4413898 n-THgtg8 NCBI_Gene:104358 MGI:4413898 tRNA gene nuclear encoded tRNA histidine 8 (anticodon GTG)
3 gene 96.50101 96.50108 negative MGI_C57BL6J_4413890 n-TGtcc7 NCBI_Gene:102467318 MGI:4413890 tRNA gene nuclear encoded tRNA glycine 7 (anticodon TCC)
3 gene 96.50145 96.50152 negative MGI_C57BL6J_4413853 n-TEctc13 NCBI_Gene:102467428 MGI:4413853 tRNA gene nuclear encoded tRNA glutamic acid 13 (anticodon CTC)
3 gene 96.50639 96.50878 negative MGI_C57BL6J_5622985 Gm40100 NCBI_Gene:105244505 MGI:5622985 lncRNA gene predicted gene, 40100
3 gene 96.52516 96.52922 positive MGI_C57BL6J_1916835 Hjv NCBI_Gene:69585,ENSEMBL:ENSMUSG00000038403 MGI:1916835 protein coding gene hemojuvelin BMP co-receptor
3 gene 96.55576 96.56680 negative MGI_C57BL6J_3641753 Gm15441 NCBI_Gene:100038464,ENSEMBL:ENSMUSG00000074398 MGI:3641753 lncRNA gene predicted gene 15441
3 gene 96.55796 96.56188 positive MGI_C57BL6J_1889549 Txnip NCBI_Gene:56338,ENSEMBL:ENSMUSG00000038393 MGI:1889549 protein coding gene thioredoxin interacting protein
3 gene 96.57698 96.58066 positive MGI_C57BL6J_3826531 Gm16253 ENSEMBL:ENSMUSG00000087610 MGI:3826531 protein coding gene predicted gene 16253
3 gene 96.57787 96.59418 negative MGI_C57BL6J_1917120 Polr3gl NCBI_Gene:69870,ENSEMBL:ENSMUSG00000028104 MGI:1917120 protein coding gene polymerase (RNA) III (DNA directed) polypeptide G like
3 gene 96.59548 96.60013 positive MGI_C57BL6J_3617846 Ankrd34a NCBI_Gene:545554,ENSEMBL:ENSMUSG00000049097 MGI:3617846 protein coding gene ankyrin repeat domain 34A
3 gene 96.60113 96.62617 positive MGI_C57BL6J_3036267 Lix1l NCBI_Gene:280411,ENSEMBL:ENSMUSG00000049288 MGI:3036267 protein coding gene Lix1-like
3 pseudogene 96.60666 96.62982 negative MGI_C57BL6J_2442586 6330549D23Rik NCBI_Gene:229613,ENSEMBL:ENSMUSG00000045327 MGI:2442586 pseudogene RIKEN cDNA 6330549D23 gene
3 gene 96.62993 96.63379 positive MGI_C57BL6J_1913129 Rbm8a NCBI_Gene:60365,ENSEMBL:ENSMUSG00000038374 MGI:1913129 protein coding gene RNA binding motif protein 8a
3 gene 96.63536 96.64538 positive MGI_C57BL6J_1338882 Pex11b NCBI_Gene:18632,ENSEMBL:ENSMUSG00000028102 MGI:1338882 protein coding gene peroxisomal biogenesis factor 11 beta
3 gene 96.63547 96.65310 positive MGI_C57BL6J_5663094 Gm42957 ENSEMBL:ENSMUSG00000106447 MGI:5663094 protein coding gene predicted gene 42957
3 gene 96.64558 96.66452 positive MGI_C57BL6J_2153482 Itga10 NCBI_Gene:213119,ENSEMBL:ENSMUSG00000090210 MGI:2153482 protein coding gene integrin, alpha 10
3 pseudogene 96.66647 96.66702 negative MGI_C57BL6J_3648207 Rpl21-ps11 NCBI_Gene:433630,ENSEMBL:ENSMUSG00000105144 MGI:3648207 pseudogene ribosomal protein L21, pseudogene 11
3 gene 96.67013 96.69103 positive MGI_C57BL6J_2442590 Ankrd35 NCBI_Gene:213121,ENSEMBL:ENSMUSG00000038354 MGI:2442590 protein coding gene ankyrin repeat domain 35
3 gene 96.69386 96.69701 negative MGI_C57BL6J_2444301 C230057H02Rik NA NA unclassified gene RIKEN cDNA C230057H02 gene
3 gene 96.69638 96.70607 positive MGI_C57BL6J_1913126 Pias3 NCBI_Gene:229615,ENSEMBL:ENSMUSG00000028101 MGI:1913126 protein coding gene protein inhibitor of activated STAT 3
3 gene 96.70589 96.70893 negative MGI_C57BL6J_1925623 Nudt17 NCBI_Gene:78373,ENSEMBL:ENSMUSG00000028100 MGI:1925623 protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 17
3 gene 96.71149 96.72763 negative MGI_C57BL6J_1921664 Polr3c NCBI_Gene:74414,ENSEMBL:ENSMUSG00000028099 MGI:1921664 protein coding gene polymerase (RNA) III (DNA directed) polypeptide C
3 gene 96.72427 96.72440 negative MGI_C57BL6J_5452358 Gm22581 ENSEMBL:ENSMUSG00000065669 MGI:5452358 snoRNA gene predicted gene, 22581
3 gene 96.72453 96.72532 negative MGI_C57BL6J_5662920 Gm42783 ENSEMBL:ENSMUSG00000104795 MGI:5662920 unclassified gene predicted gene 42783
3 gene 96.72759 96.79164 positive MGI_C57BL6J_1915095 Rnf115 NCBI_Gene:67845,ENSEMBL:ENSMUSG00000028098 MGI:1915095 protein coding gene ring finger protein 115
3 gene 96.78432 96.78485 positive MGI_C57BL6J_5662919 Gm42782 ENSEMBL:ENSMUSG00000105976 MGI:5662919 unclassified gene predicted gene 42782
3 gene 96.79876 96.82935 negative MGI_C57BL6J_1860383 Cd160 NCBI_Gene:54215,ENSEMBL:ENSMUSG00000038304 MGI:1860383 protein coding gene CD160 antigen
3 gene 96.82928 96.87093 positive MGI_C57BL6J_1928901 Pdzk1 NCBI_Gene:59020,ENSEMBL:ENSMUSG00000038298 MGI:1928901 protein coding gene PDZ domain containing 1
3 gene 96.82983 96.83210 negative MGI_C57BL6J_1914833 4930442L01Rik NCBI_Gene:67583,ENSEMBL:ENSMUSG00000087223 MGI:1914833 lncRNA gene RIKEN cDNA 4930442L01 gene
3 gene 96.86828 96.90535 negative MGI_C57BL6J_1914799 Gpr89 NCBI_Gene:67549,ENSEMBL:ENSMUSG00000028096 MGI:1914799 protein coding gene G protein-coupled receptor 89
3 gene 96.90469 97.07742 positive MGI_C57BL6J_95716 Gja5 NCBI_Gene:14613,ENSEMBL:ENSMUSG00000057123 MGI:95716 protein coding gene gap junction protein, alpha 5
3 gene 96.91357 96.92605 negative MGI_C57BL6J_99953 Gja8 NCBI_Gene:14616,ENSEMBL:ENSMUSG00000049908 MGI:99953 protein coding gene gap junction protein, alpha 8
3 gene 96.99872 97.00077 negative MGI_C57BL6J_1925330 9230114J08Rik ENSEMBL:ENSMUSG00000105385 MGI:1925330 lncRNA gene RIKEN cDNA 9230114J08 gene
3 gene 97.04666 97.09279 negative MGI_C57BL6J_1923138 4930573H18Rik NCBI_Gene:75888,ENSEMBL:ENSMUSG00000104766 MGI:1923138 lncRNA gene RIKEN cDNA 4930573H18 gene
3 gene 97.07415 97.07602 positive MGI_C57BL6J_5590279 Gm31120 NCBI_Gene:102633248 MGI:5590279 lncRNA gene predicted gene, 31120
3 gene 97.10109 97.10296 positive MGI_C57BL6J_5590342 Gm31183 NCBI_Gene:102633334 MGI:5590342 lncRNA gene predicted gene, 31183
3 pseudogene 97.12551 97.12611 negative MGI_C57BL6J_5663359 Gm43222 ENSEMBL:ENSMUSG00000106324 MGI:5663359 pseudogene predicted gene 43222
3 gene 97.14055 97.14066 negative MGI_C57BL6J_5454212 Gm24435 ENSEMBL:ENSMUSG00000088511 MGI:5454212 snRNA gene predicted gene, 24435
3 gene 97.15808 97.15816 positive MGI_C57BL6J_4413852 n-TEctc12 NCBI_Gene:102467522 MGI:4413852 tRNA gene nuclear encoded tRNA glutamic acid 12 (anticodon CTC)
3 gene 97.15875 97.17730 positive MGI_C57BL6J_1931010 Acp6 NCBI_Gene:66659,ENSEMBL:ENSMUSG00000028093 MGI:1931010 protein coding gene acid phosphatase 6, lysophosphatidic
3 gene 97.20366 97.29808 negative MGI_C57BL6J_1924828 Bcl9 NCBI_Gene:77578,ENSEMBL:ENSMUSG00000038256 MGI:1924828 protein coding gene B cell CLL/lymphoma 9
3 gene 97.26235 97.26565 positive MGI_C57BL6J_5662645 Gm42508 ENSEMBL:ENSMUSG00000106536 MGI:5662645 unclassified gene predicted gene 42508
3 gene 97.27063 97.27162 negative MGI_C57BL6J_1924948 9230110I02Rik NA NA unclassified non-coding RNA gene RIKEN cDNA 9230110I02 gene
3 gene 97.27388 97.27506 negative MGI_C57BL6J_5663210 Gm43073 ENSEMBL:ENSMUSG00000104745 MGI:5663210 unclassified gene predicted gene 43073
3 gene 97.33042 97.33295 positive MGI_C57BL6J_5622986 Gm40101 NCBI_Gene:105244507 MGI:5622986 lncRNA gene predicted gene, 40101
3 gene 97.40745 97.42202 negative MGI_C57BL6J_3031236 Olfr1402 NCBI_Gene:258272,ENSEMBL:ENSMUSG00000051392 MGI:3031236 protein coding gene olfactory receptor 1402
3 gene 97.54630 97.57259 positive MGI_C57BL6J_5622987 Gm40102 NCBI_Gene:105244508 MGI:5622987 lncRNA gene predicted gene, 40102
3 gene 97.56074 97.61020 negative MGI_C57BL6J_1915308 Chd1l NCBI_Gene:68058,ENSEMBL:ENSMUSG00000028089 MGI:1915308 protein coding gene chromodomain helicase DNA binding protein 1-like
3 gene 97.60993 97.61384 positive MGI_C57BL6J_5663212 Gm43075 ENSEMBL:ENSMUSG00000105004 MGI:5663212 unclassified gene predicted gene 43075
3 gene 97.61019 97.65529 positive MGI_C57BL6J_1310004 Fmo5 NCBI_Gene:14263,ENSEMBL:ENSMUSG00000028088 MGI:1310004 protein coding gene flavin containing monooxygenase 5
3 gene 97.65819 97.67381 positive MGI_C57BL6J_1336185 Prkab2 NCBI_Gene:108097,ENSEMBL:ENSMUSG00000038205 MGI:1336185 protein coding gene protein kinase, AMP-activated, beta 2 non-catalytic subunit
3 gene 97.67303 97.67469 negative MGI_C57BL6J_4937285 Gm17651 ENSEMBL:ENSMUSG00000090441 MGI:4937285 protein coding gene predicted gene, 17651
3 gene 97.68034 97.68206 positive MGI_C57BL6J_5590401 Gm31242 NCBI_Gene:102633409 MGI:5590401 lncRNA gene predicted gene, 31242
3 gene 97.68146 97.68153 positive MGI_C57BL6J_4413826 n-TQctg2 NCBI_Gene:102467291 MGI:4413826 tRNA gene nuclear encoded tRNA glutamine 2 (anticodon CTG)
3 gene 97.68982 97.88871 negative MGI_C57BL6J_1891434 Pde4dip NCBI_Gene:83679,ENSEMBL:ENSMUSG00000038170 MGI:1891434 protein coding gene phosphodiesterase 4D interacting protein (myomegalin)
3 gene 97.69051 97.69056 negative MGI_C57BL6J_5530881 Mir7225 miRBase:MI0023720,NCBI_Gene:102466229,ENSEMBL:ENSMUSG00000098381 MGI:5530881 miRNA gene microRNA 7225
3 gene 97.73034 97.73714 positive MGI_C57BL6J_5590464 Gm31305 NCBI_Gene:102633492,ENSEMBL:ENSMUSG00000105245 MGI:5590464 lncRNA gene predicted gene, 31305
3 gene 97.74903 97.75107 positive MGI_C57BL6J_5826453 Gm46816 NCBI_Gene:108168886 MGI:5826453 lncRNA gene predicted gene, 46816
3 gene 97.76152 97.76277 negative MGI_C57BL6J_2444459 A630078F23Rik NA NA unclassified gene RIKEN cDNA A630078F23 gene
3 pseudogene 97.78707 97.78785 negative MGI_C57BL6J_5011008 Gm18823 NCBI_Gene:100417783 MGI:5011008 pseudogene predicted gene, 18823
3 gene 97.89223 97.90109 negative MGI_C57BL6J_3802103 Gm15999 ENSEMBL:ENSMUSG00000086557 MGI:3802103 lncRNA gene predicted gene 15999
3 gene 97.90119 97.92328 positive MGI_C57BL6J_1338759 Sec22b NCBI_Gene:20333,ENSEMBL:ENSMUSG00000027879 MGI:1338759 protein coding gene SEC22 homolog B, vesicle trafficking protein
3 gene 97.93017 97.96702 positive MGI_C57BL6J_3648209 Gm5544 NCBI_Gene:433632,ENSEMBL:ENSMUSG00000074388 MGI:3648209 lncRNA gene predicted gene 5544
3 gene 98.01353 98.15037 positive MGI_C57BL6J_97364 Notch2 NCBI_Gene:18129,ENSEMBL:ENSMUSG00000027878 MGI:97364 protein coding gene notch 2
3 gene 98.02231 98.02688 negative MGI_C57BL6J_5622988 Gm40103 NCBI_Gene:105244509 MGI:5622988 lncRNA gene predicted gene, 40103
3 gene 98.03069 98.03581 positive MGI_C57BL6J_5662956 Gm42819 ENSEMBL:ENSMUSG00000105728 MGI:5662956 unclassified gene predicted gene 42819
3 gene 98.12159 98.12465 positive MGI_C57BL6J_5662957 Gm42820 ENSEMBL:ENSMUSG00000106427 MGI:5662957 unclassified gene predicted gene 42820
3 gene 98.16063 98.16417 positive MGI_C57BL6J_1918328 Adam30 NCBI_Gene:71078,ENSEMBL:ENSMUSG00000043468 MGI:1918328 protein coding gene a disintegrin and metallopeptidase domain 30
3 pseudogene 98.18997 98.19112 negative MGI_C57BL6J_3642065 Gm9771 NCBI_Gene:622561,ENSEMBL:ENSMUSG00000106486 MGI:3642065 pseudogene predicted gene 9771
3 gene 98.20235 98.20676 positive MGI_C57BL6J_5622989 Gm40104 NCBI_Gene:105244510 MGI:5622989 lncRNA gene predicted gene, 40104
3 gene 98.22214 98.23675 positive MGI_C57BL6J_1914959 Reg4 NCBI_Gene:67709,ENSEMBL:ENSMUSG00000027876 MGI:1914959 protein coding gene regenerating islet-derived family, member 4
3 pseudogene 98.24860 98.24909 positive MGI_C57BL6J_5662958 Gm42821 ENSEMBL:ENSMUSG00000104842 MGI:5662958 pseudogene predicted gene 42821
3 gene 98.28043 98.31074 positive MGI_C57BL6J_101939 Hmgcs2 NCBI_Gene:15360,ENSEMBL:ENSMUSG00000027875 MGI:101939 protein coding gene 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
3 gene 98.28699 98.29006 positive MGI_C57BL6J_5663326 Gm43189 ENSEMBL:ENSMUSG00000105909 MGI:5663326 lncRNA gene predicted gene 43189
3 gene 98.31317 98.33999 negative MGI_C57BL6J_1355330 Phgdh NCBI_Gene:236539,ENSEMBL:ENSMUSG00000053398 MGI:1355330 protein coding gene 3-phosphoglycerate dehydrogenase
3 gene 98.35151 98.35497 positive MGI_C57BL6J_5590579 Gm31420 NCBI_Gene:102633639 MGI:5590579 lncRNA gene predicted gene, 31420
3 gene 98.38134 98.75381 positive MGI_C57BL6J_2139736 Zfp697 NCBI_Gene:242109,ENSEMBL:ENSMUSG00000050064 MGI:2139736 protein coding gene zinc finger protein 697
3 gene 98.44567 98.45714 negative MGI_C57BL6J_3782634 Gm4450 NCBI_Gene:100043461,ENSEMBL:ENSMUSG00000090817 MGI:3782634 protein coding gene predicted gene 4450
3 gene 98.44720 98.44898 negative MGI_C57BL6J_5663327 Gm43190 ENSEMBL:ENSMUSG00000106107 MGI:5663327 lncRNA gene predicted gene 43190
3 pseudogene 98.46915 98.47322 negative MGI_C57BL6J_5011395 Gm19210 NCBI_Gene:100418432,ENSEMBL:ENSMUSG00000106129 MGI:5011395 pseudogene predicted gene, 19210
3 gene 98.49907 98.51058 negative MGI_C57BL6J_96236 Hsd3b4 NCBI_Gene:15495,ENSEMBL:ENSMUSG00000095143 MGI:96236 protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4
3 pseudogene 98.52274 98.52669 negative MGI_C57BL6J_5011396 Gm19211 NCBI_Gene:100418433,ENSEMBL:ENSMUSG00000105696 MGI:5011396 pseudogene predicted gene, 19211
3 gene 98.55254 98.58881 negative MGI_C57BL6J_3711284 Gm10681 NCBI_Gene:100043456,ENSEMBL:ENSMUSG00000095388 MGI:3711284 protein coding gene predicted gene 10681
3 pseudogene 98.57976 98.58057 negative MGI_C57BL6J_3648707 Gm5853 NCBI_Gene:545555,ENSEMBL:ENSMUSG00000105641 MGI:3648707 pseudogene predicted gene 5853
3 pseudogene 98.58115 98.58829 negative MGI_C57BL6J_3780086 Gm9678 NCBI_Gene:676433,ENSEMBL:ENSMUSG00000106456 MGI:3780086 pseudogene predicted gene 9678
3 gene 98.61863 98.64553 negative MGI_C57BL6J_104645 Hsd3b5 NCBI_Gene:15496,ENSEMBL:ENSMUSG00000038092 MGI:104645 protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5
3 pseudogene 98.66985 98.67833 negative MGI_C57BL6J_3651917 Gm12399 NCBI_Gene:100418434,ENSEMBL:ENSMUSG00000081919 MGI:3651917 pseudogene predicted gene 12399
3 pseudogene 98.68082 98.68824 negative MGI_C57BL6J_3651916 Gm12400 NCBI_Gene:668543,ENSEMBL:ENSMUSG00000083331 MGI:3651916 pseudogene predicted gene 12400
3 gene 98.70925 98.72459 negative MGI_C57BL6J_96234 Hsd3b2 NCBI_Gene:15493,ENSEMBL:ENSMUSG00000063730 MGI:96234 protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2
3 gene 98.74148 98.76515 negative MGI_C57BL6J_96235 Hsd3b3 NCBI_Gene:15494,ENSEMBL:ENSMUSG00000062410 MGI:96235 protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 3
3 gene 98.80550 98.81444 negative MGI_C57BL6J_109598 Hsd3b6 NCBI_Gene:15497,ENSEMBL:ENSMUSG00000027869 MGI:109598 protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 6
3 pseudogene 98.81808 98.82002 negative MGI_C57BL6J_3650847 Gm12427 ENSEMBL:ENSMUSG00000083222 MGI:3650847 pseudogene predicted gene 12427
3 pseudogene 98.82085 98.82266 positive MGI_C57BL6J_3650848 Gm12428 NCBI_Gene:545556,ENSEMBL:ENSMUSG00000082185 MGI:3650848 pseudogene predicted gene 12428
3 gene 98.84235 98.85979 negative MGI_C57BL6J_96233 Hsd3b1 NCBI_Gene:15492,ENSEMBL:ENSMUSG00000027871 MGI:96233 protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1
3 pseudogene 98.84287 98.84304 negative MGI_C57BL6J_3649672 Gm12431 ENSEMBL:ENSMUSG00000082089 MGI:3649672 pseudogene predicted gene 12431
3 pseudogene 98.84634 98.84652 negative MGI_C57BL6J_3649670 Gm12432 ENSEMBL:ENSMUSG00000083577 MGI:3649670 pseudogene predicted gene 12432
3 pseudogene 98.84651 98.84676 positive MGI_C57BL6J_3649669 Gm12433 ENSEMBL:ENSMUSG00000082589 MGI:3649669 pseudogene predicted gene 12433
3 gene 98.87452 98.89538 negative MGI_C57BL6J_96012 Hao2 NCBI_Gene:56185,ENSEMBL:ENSMUSG00000027870 MGI:96012 protein coding gene hydroxyacid oxidase 2
3 gene 98.89783 98.93252 negative MGI_C57BL6J_5591039 Gm31880 NCBI_Gene:102634250 MGI:5591039 lncRNA gene predicted gene, 31880
3 gene 98.93765 98.94126 negative MGI_C57BL6J_1917808 5730437C11Rik ENSEMBL:ENSMUSG00000085121 MGI:1917808 lncRNA gene RIKEN cDNA 5730437C11 gene
3 gene 99.04982 99.05374 positive MGI_C57BL6J_3649266 Gm12440 NCBI_Gene:102634753,ENSEMBL:ENSMUSG00000086833 MGI:3649266 lncRNA gene predicted gene 12440
3 pseudogene 99.10057 99.10115 negative MGI_C57BL6J_3649265 Gm12441 NCBI_Gene:102631982,ENSEMBL:ENSMUSG00000083888 MGI:3649265 pseudogene predicted gene 12441
3 gene 99.11096 99.11570 positive MGI_C57BL6J_5622990 Gm40105 NCBI_Gene:105244511 MGI:5622990 lncRNA gene predicted gene, 40105
3 gene 99.11316 99.11328 negative MGI_C57BL6J_5452118 Gm22341 ENSEMBL:ENSMUSG00000065709 MGI:5452118 snoRNA gene predicted gene, 22341
3 gene 99.12419 99.12430 negative MGI_C57BL6J_5453993 Gm24216 ENSEMBL:ENSMUSG00000088884 MGI:5453993 snoRNA gene predicted gene, 24216
3 gene 99.14062 99.23919 positive MGI_C57BL6J_1917810 Wars2 NCBI_Gene:70560,ENSEMBL:ENSMUSG00000004233 MGI:1917810 protein coding gene tryptophanyl tRNA synthetase 2 (mitochondrial)
3 gene 99.14460 99.14895 positive MGI_C57BL6J_5663161 Gm43024 ENSEMBL:ENSMUSG00000105472 MGI:5663161 lncRNA gene predicted gene 43024
3 pseudogene 99.18075 99.18139 negative MGI_C57BL6J_5011167 Gm18982 NCBI_Gene:100418070,ENSEMBL:ENSMUSG00000105798 MGI:5011167 pseudogene predicted gene, 18982
3 gene 99.19934 99.19945 negative MGI_C57BL6J_5531126 Mir6481 miRBase:MI0022051,NCBI_Gene:102465230,ENSEMBL:ENSMUSG00000098918 MGI:5531126 miRNA gene microRNA 6481
3 gene 99.20642 99.20988 positive MGI_C57BL6J_5662854 Gm42717 ENSEMBL:ENSMUSG00000106197 MGI:5662854 lncRNA gene predicted gene 42717
3 gene 99.23691 99.23912 positive MGI_C57BL6J_5621353 Gm38468 NCBI_Gene:102634827 MGI:5621353 lncRNA gene predicted gene, 38468
3 gene 99.24035 99.35426 positive MGI_C57BL6J_1277234 Tbx15 NCBI_Gene:21384,ENSEMBL:ENSMUSG00000027868 MGI:1277234 protein coding gene T-box 15
3 gene 99.24066 99.24189 negative MGI_C57BL6J_5826454 Gm46817 NCBI_Gene:108168887 MGI:5826454 lncRNA gene predicted gene, 46817
3 gene 99.25470 99.26129 negative MGI_C57BL6J_5663257 Gm43120 ENSEMBL:ENSMUSG00000105689 MGI:5663257 lncRNA gene predicted gene 43120
3 pseudogene 99.46359 99.46382 negative MGI_C57BL6J_3650542 Gm12449 ENSEMBL:ENSMUSG00000081183 MGI:3650542 pseudogene predicted gene 12449
3 pseudogene 99.50037 99.50261 positive MGI_C57BL6J_96905 M6pr-ps NCBI_Gene:17114,ENSEMBL:ENSMUSG00000080832 MGI:96905 pseudogene mannose-6-phosphate receptor, pseudogene
3 pseudogene 99.54441 99.54506 negative MGI_C57BL6J_3651230 Gm12448 ENSEMBL:ENSMUSG00000083938 MGI:3651230 pseudogene predicted gene 12448
3 gene 99.70774 99.70785 negative MGI_C57BL6J_5452282 Gm22505 ENSEMBL:ENSMUSG00000064890 MGI:5452282 snRNA gene predicted gene, 22505
3 gene 99.88541 100.14332 positive MGI_C57BL6J_1921612 Spag17 NCBI_Gene:74362,ENSEMBL:ENSMUSG00000027867 MGI:1921612 protein coding gene sperm associated antigen 17
3 pseudogene 100.00832 100.00873 positive MGI_C57BL6J_3649699 Rpl36-ps7 NCBI_Gene:623045,ENSEMBL:ENSMUSG00000080754 MGI:3649699 pseudogene ribosomal protein L36, pseudogene 7
3 pseudogene 100.07848 100.07864 negative MGI_C57BL6J_3650850 Tra2b-ps ENSEMBL:ENSMUSG00000082763 MGI:3650850 pseudogene transformer 2 beta, pseudogene
3 gene 100.10068 100.10689 negative MGI_C57BL6J_2444368 Spag17os ENSEMBL:ENSMUSG00000085244 MGI:2444368 antisense lncRNA gene sperm associated antigen 17, opposite strand
3 gene 100.13818 100.16241 negative MGI_C57BL6J_2443143 Wdr3 NCBI_Gene:269470,ENSEMBL:ENSMUSG00000033285 MGI:2443143 protein coding gene WD repeat domain 3
3 gene 100.16238 100.20699 positive MGI_C57BL6J_1338001 Gdap2 NCBI_Gene:14547,ENSEMBL:ENSMUSG00000027865 MGI:1338001 protein coding gene ganglioside-induced differentiation-associated-protein 2
3 gene 100.30329 100.30336 positive MGI_C57BL6J_5455579 Gm25802 ENSEMBL:ENSMUSG00000064573 MGI:5455579 snoRNA gene predicted gene, 25802
3 pseudogene 100.41355 100.41478 positive MGI_C57BL6J_3650645 Gm12464 NCBI_Gene:195514,ENSEMBL:ENSMUSG00000081440 MGI:3650645 pseudogene predicted gene 12464
3 gene 100.41808 100.42242 positive MGI_C57BL6J_5591630 Gm32471 NCBI_Gene:102635032 MGI:5591630 lncRNA gene predicted gene, 32471
3 gene 100.42641 100.43775 positive MGI_C57BL6J_1921056 4930406D18Rik NCBI_Gene:73806,ENSEMBL:ENSMUSG00000086923 MGI:1921056 lncRNA gene RIKEN cDNA 4930406D18 gene
3 gene 100.43783 100.43914 positive MGI_C57BL6J_5663258 Gm43121 ENSEMBL:ENSMUSG00000106639 MGI:5663258 lncRNA gene predicted gene 43121
3 gene 100.45163 100.48932 negative MGI_C57BL6J_1921895 Tent5c NCBI_Gene:74645,ENSEMBL:ENSMUSG00000044468 MGI:1921895 protein coding gene terminal nucleotidyltransferase 5C
3 gene 100.45181 100.45958 negative MGI_C57BL6J_5621415 Gm38530 NCBI_Gene:102641070 MGI:5621415 lncRNA gene predicted gene, 38530
3 gene 100.48932 100.53121 positive MGI_C57BL6J_3649378 Gm12474 NCBI_Gene:545557,ENSEMBL:ENSMUSG00000053957 MGI:3649378 lncRNA gene predicted gene 12474
3 gene 100.49536 100.54135 negative MGI_C57BL6J_5622991 Gm40106 NCBI_Gene:105244512 MGI:5622991 lncRNA gene predicted gene, 40106
3 gene 100.49743 100.50012 positive MGI_C57BL6J_5663005 Gm42868 ENSEMBL:ENSMUSG00000104943 MGI:5663005 lncRNA gene predicted gene 42868
3 gene 100.56220 100.68550 negative MGI_C57BL6J_104676 Man1a2 NCBI_Gene:17156,ENSEMBL:ENSMUSG00000008763 MGI:104676 protein coding gene mannosidase, alpha, class 1A, member 2
3 gene 100.58231 100.58753 negative MGI_C57BL6J_5663603 Gm43466 ENSEMBL:ENSMUSG00000105824 MGI:5663603 lncRNA gene predicted gene 43466
3 gene 100.62490 100.62702 negative MGI_C57BL6J_5663006 Gm42869 ENSEMBL:ENSMUSG00000105137 MGI:5663006 lncRNA gene predicted gene 42869
3 gene 100.62730 100.63094 negative MGI_C57BL6J_5663599 Gm43462 ENSEMBL:ENSMUSG00000105561 MGI:5663599 lncRNA gene predicted gene 43462
3 gene 100.67829 100.68009 negative MGI_C57BL6J_5663600 Gm43463 ENSEMBL:ENSMUSG00000106184 MGI:5663600 lncRNA gene predicted gene 43463
3 pseudogene 100.68027 100.68055 positive MGI_C57BL6J_3651876 Gm12485 ENSEMBL:ENSMUSG00000083842 MGI:3651876 pseudogene predicted gene 12485
3 gene 100.69271 100.70008 positive MGI_C57BL6J_5663601 Gm43464 ENSEMBL:ENSMUSG00000106227 MGI:5663601 lncRNA gene predicted gene 43464
3 gene 100.73845 100.73871 negative MGI_C57BL6J_5453242 Gm23465 ENSEMBL:ENSMUSG00000087759 MGI:5453242 unclassified non-coding RNA gene predicted gene, 23465
3 gene 100.81154 100.81775 negative MGI_C57BL6J_5622992 Gm40107 NCBI_Gene:105244513 MGI:5622992 lncRNA gene predicted gene, 40107
3 gene 100.82040 100.82702 negative MGI_C57BL6J_5591879 Gm32720 NCBI_Gene:102635361 MGI:5591879 lncRNA gene predicted gene, 32720
3 gene 100.82546 100.89692 positive MGI_C57BL6J_3039619 Vtcn1 NCBI_Gene:242122,ENSEMBL:ENSMUSG00000051076 MGI:3039619 protein coding gene V-set domain containing T cell activation inhibitor 1
3 gene 100.90894 100.91522 positive MGI_C57BL6J_5622993 Gm40108 NCBI_Gene:105244514 MGI:5622993 lncRNA gene predicted gene, 40108
3 gene 100.92220 100.93693 positive MGI_C57BL6J_1918187 Trim45 NCBI_Gene:229644,ENSEMBL:ENSMUSG00000033233 MGI:1918187 protein coding gene tripartite motif-containing 45
3 gene 100.93886 100.96972 negative MGI_C57BL6J_1921294 Ttf2 NCBI_Gene:74044,ENSEMBL:ENSMUSG00000033222 MGI:1921294 protein coding gene transcription termination factor, RNA polymerase II
3 pseudogene 100.95544 100.95594 positive MGI_C57BL6J_3650947 Gm12488 ENSEMBL:ENSMUSG00000082000 MGI:3650947 pseudogene predicted gene 12488
3 gene 100.99353 101.02956 negative MGI_C57BL6J_2685862 Cd101 NCBI_Gene:630146,ENSEMBL:ENSMUSG00000086564 MGI:2685862 protein coding gene CD101 antigen
3 gene 101.04023 101.11075 negative MGI_C57BL6J_1277114 Ptgfrn NCBI_Gene:19221,ENSEMBL:ENSMUSG00000027864 MGI:1277114 protein coding gene prostaglandin F2 receptor negative regulator
3 gene 101.08459 101.08739 negative MGI_C57BL6J_5663602 Gm43465 ENSEMBL:ENSMUSG00000105717 MGI:5663602 lncRNA gene predicted gene 43465
3 pseudogene 101.20666 101.20748 negative MGI_C57BL6J_3650949 Gm12486 NCBI_Gene:668578,ENSEMBL:ENSMUSG00000082415 MGI:3650949 pseudogene predicted gene 12486
3 pseudogene 101.23346 101.23412 positive MGI_C57BL6J_107797 Tpt1-ps1 NCBI_Gene:668583,ENSEMBL:ENSMUSG00000083546 MGI:107797 pseudogene tumor protein, translationally-controlled, pseudogene 1
3 pseudogene 101.26092 101.26148 positive MGI_C57BL6J_3651827 Gm12490 NCBI_Gene:669017,ENSEMBL:ENSMUSG00000081569 MGI:3651827 pseudogene predicted gene 12490
3 gene 101.27590 101.28794 negative MGI_C57BL6J_88320 Cd2 NCBI_Gene:12481,ENSEMBL:ENSMUSG00000027863 MGI:88320 protein coding gene CD2 antigen
3 gene 101.29100 101.29661 negative MGI_C57BL6J_5591962 Gm32803 NCBI_Gene:102635474 MGI:5591962 lncRNA gene predicted gene, 32803
3 pseudogene 101.30643 101.30719 negative MGI_C57BL6J_3641762 Gm10355 NCBI_Gene:100043490,ENSEMBL:ENSMUSG00000072381 MGI:3641762 pseudogene predicted gene 10355
3 pseudogene 101.31085 101.31128 positive MGI_C57BL6J_5663604 Gm43467 ENSEMBL:ENSMUSG00000106316 MGI:5663604 pseudogene predicted gene 43467
3 gene 101.31591 101.32129 positive MGI_C57BL6J_5592007 Gm32848 NCBI_Gene:102635540 MGI:5592007 lncRNA gene predicted gene, 32848
3 gene 101.33963 101.35461 negative MGI_C57BL6J_5592059 Gm32900 NCBI_Gene:102635610 MGI:5592059 lncRNA gene predicted gene, 32900
3 gene 101.37708 101.46306 positive MGI_C57BL6J_1926158 Igsf3 NCBI_Gene:78908,ENSEMBL:ENSMUSG00000042035 MGI:1926158 protein coding gene immunoglobulin superfamily, member 3
3 gene 101.40779 101.41000 positive MGI_C57BL6J_5663076 Gm42939 ENSEMBL:ENSMUSG00000104639 MGI:5663076 lncRNA gene predicted gene 42939
3 gene 101.41154 101.41261 positive MGI_C57BL6J_5663075 Gm42938 ENSEMBL:ENSMUSG00000105611 MGI:5663075 lncRNA gene predicted gene 42938
3 gene 101.42462 101.42694 negative MGI_C57BL6J_5662675 Gm42538 ENSEMBL:ENSMUSG00000106137 MGI:5662675 lncRNA gene predicted gene 42538
3 gene 101.50193 101.50785 negative MGI_C57BL6J_5622994 Gm40109 NCBI_Gene:105244515 MGI:5622994 lncRNA gene predicted gene, 40109
3 gene 101.51156 101.53625 negative MGI_C57BL6J_5592321 Gm33162 NCBI_Gene:102635957 MGI:5592321 lncRNA gene predicted gene, 33162
3 gene 101.57622 101.60471 negative MGI_C57BL6J_88105 Atp1a1 NCBI_Gene:11928,ENSEMBL:ENSMUSG00000033161 MGI:88105 protein coding gene ATPase, Na+/K+ transporting, alpha 1 polypeptide
3 gene 101.58030 101.58106 negative MGI_C57BL6J_5663074 Gm42937 ENSEMBL:ENSMUSG00000104737 MGI:5663074 lncRNA gene predicted gene 42937
3 gene 101.59581 101.59713 negative MGI_C57BL6J_5663078 Gm42941 ENSEMBL:ENSMUSG00000104693 MGI:5663078 lncRNA gene predicted gene 42941
3 gene 101.63405 101.65080 negative MGI_C57BL6J_5592374 Gm33215 NCBI_Gene:102636027 MGI:5592374 lncRNA gene predicted gene, 33215
3 gene 101.65909 101.66730 negative MGI_C57BL6J_5592424 Gm33265 NCBI_Gene:102636098 MGI:5592424 lncRNA gene predicted gene, 33265
3 gene 101.69179 101.69963 positive MGI_C57BL6J_5663272 Gm43135 ENSEMBL:ENSMUSG00000106070 MGI:5663272 lncRNA gene predicted gene 43135
3 gene 101.72714 101.73754 negative MGI_C57BL6J_5592468 Gm33309 NCBI_Gene:102636166 MGI:5592468 lncRNA gene predicted gene, 33309
3 gene 101.74812 101.75001 positive MGI_C57BL6J_5663271 Gm43134 ENSEMBL:ENSMUSG00000105642 MGI:5663271 lncRNA gene predicted gene 43134
3 gene 101.81308 101.84896 negative MGI_C57BL6J_2446273 Mab21l3 NCBI_Gene:242125,ENSEMBL:ENSMUSG00000044313 MGI:2446273 protein coding gene mab-21-like 3
3 gene 101.82688 101.83499 positive MGI_C57BL6J_5592540 Gm33381 NCBI_Gene:102636267 MGI:5592540 lncRNA gene predicted gene, 33381
3 gene 101.85444 101.92454 negative MGI_C57BL6J_3607704 Slc22a15 NCBI_Gene:242126,ENSEMBL:ENSMUSG00000033147 MGI:3607704 protein coding gene solute carrier family 22 (organic anion/cation transporter), member 15
3 gene 102.01008 102.01549 positive MGI_C57BL6J_97324 Nhlh2 NCBI_Gene:18072,ENSEMBL:ENSMUSG00000048540 MGI:97324 protein coding gene nescient helix loop helix 2
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 104.8228 104.8645 negative MGI_C57BL6J_106227 Capza1 NCBI_Gene:12340,ENSEMBL:ENSMUSG00000070372 MGI:106227 protein coding gene capping protein (actin filament) muscle Z-line, alpha 1
3 gene 104.8263 104.8279 negative MGI_C57BL6J_5662795 Gm42658 ENSEMBL:ENSMUSG00000106251 MGI:5662795 lncRNA gene predicted gene 42658
3 gene 104.8364 104.8382 negative MGI_C57BL6J_5662796 Gm42659 ENSEMBL:ENSMUSG00000105655 MGI:5662796 lncRNA gene predicted gene 42659
3 gene 104.8640 104.9301 positive MGI_C57BL6J_2386964 St7l NCBI_Gene:229681,ENSEMBL:ENSMUSG00000045576 MGI:2386964 protein coding gene suppression of tumorigenicity 7-like
3 pseudogene 104.9159 104.9162 negative MGI_C57BL6J_3782710 Gm4525 NCBI_Gene:100043572,ENSEMBL:ENSMUSG00000106105 MGI:3782710 pseudogene predicted gene 4525
3 gene 104.9448 104.9619 negative MGI_C57BL6J_1261834 Wnt2b NCBI_Gene:22414,ENSEMBL:ENSMUSG00000027840 MGI:1261834 protein coding gene wingless-type MMTV integration site family, member 2B
3 gene 104.9574 104.9584 negative MGI_C57BL6J_5663983 Gm43846 ENSEMBL:ENSMUSG00000105925 MGI:5663983 lncRNA gene predicted gene 43846
3 gene 104.9816 104.9862 positive MGI_C57BL6J_5826456 Gm46819 NCBI_Gene:108168890 MGI:5826456 lncRNA gene predicted gene, 46819
3 gene 104.9922 105.0040 positive MGI_C57BL6J_5623002 Gm40117 NCBI_Gene:105244523,ENSEMBL:ENSMUSG00000105355 MGI:5623002 lncRNA gene predicted gene, 40117
3 gene 105.0019 105.0531 negative MGI_C57BL6J_1933137 Cttnbp2nl NCBI_Gene:80281,ENSEMBL:ENSMUSG00000062127 MGI:1933137 protein coding gene CTTNBP2 N-terminal like
3 gene 105.0081 105.0178 positive MGI_C57BL6J_5623001 Gm40116 NCBI_Gene:105244522 MGI:5623001 lncRNA gene predicted gene, 40116
3 gene 105.0668 105.0788 positive MGI_C57BL6J_1922519 4930564D02Rik NCBI_Gene:75269,ENSEMBL:ENSMUSG00000051788 MGI:1922519 protein coding gene RIKEN cDNA 4930564D02 gene
3 gene 105.0976 105.0983 positive MGI_C57BL6J_5593940 Gm34781 NA NA protein coding gene predicted gene%2c 34781
3 gene 105.1074 105.1350 positive MGI_C57BL6J_5623003 Gm40118 NCBI_Gene:105244524 MGI:5623003 lncRNA gene predicted gene, 40118
3 gene 105.3551 105.3683 positive MGI_C57BL6J_5593996 Gm34837 NCBI_Gene:102638225 MGI:5593996 lncRNA gene predicted gene, 34837
3 gene 105.4416 105.4530 negative MGI_C57BL6J_1925885 Kcnd3os NCBI_Gene:78635,ENSEMBL:ENSMUSG00000074346 MGI:1925885 antisense lncRNA gene potassium voltage-gated channel, Shal-related family, member 3, opposite strand
3 gene 105.4522 105.6740 positive MGI_C57BL6J_1928743 Kcnd3 NCBI_Gene:56543,ENSEMBL:ENSMUSG00000040896 MGI:1928743 protein coding gene potassium voltage-gated channel, Shal-related family, member 3
3 gene 105.5029 105.5048 positive MGI_C57BL6J_5663984 Gm43847 ENSEMBL:ENSMUSG00000105753 MGI:5663984 lncRNA gene predicted gene 43847
3 gene 105.6783 105.6881 negative MGI_C57BL6J_1858415 Ddx20 NCBI_Gene:53975,ENSEMBL:ENSMUSG00000027905 MGI:1858415 protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
3 gene 105.7046 105.7208 positive MGI_C57BL6J_1923497 Inka2 NCBI_Gene:109050,ENSEMBL:ENSMUSG00000048458 MGI:1923497 protein coding gene inka box actin regulator 2
3 gene 105.7259 105.7271 negative MGI_C57BL6J_5663985 Gm43848 ENSEMBL:ENSMUSG00000106317 MGI:5663985 lncRNA gene predicted gene 43848
3 gene 105.7273 105.8014 negative MGI_C57BL6J_97852 Rap1a NCBI_Gene:109905,ENSEMBL:ENSMUSG00000068798 MGI:97852 protein coding gene RAS-related protein 1a
3 gene 105.7324 105.7339 negative MGI_C57BL6J_5663465 Gm43328 ENSEMBL:ENSMUSG00000105677 MGI:5663465 lncRNA gene predicted gene 43328
3 gene 105.7670 105.7702 negative MGI_C57BL6J_5663466 Gm43329 ENSEMBL:ENSMUSG00000105842 MGI:5663466 lncRNA gene predicted gene 43329
3 gene 105.7829 105.7850 negative MGI_C57BL6J_5663467 Gm43330 ENSEMBL:ENSMUSG00000106341 MGI:5663467 lncRNA gene predicted gene 43330
3 gene 105.7876 105.7893 negative MGI_C57BL6J_5663468 Gm43331 ENSEMBL:ENSMUSG00000104910 MGI:5663468 lncRNA gene predicted gene 43331
3 gene 105.8155 105.8174 positive MGI_C57BL6J_3648206 Gm5547 NCBI_Gene:433637,ENSEMBL:ENSMUSG00000104835 MGI:3648206 lncRNA gene predicted gene 5547
3 gene 105.8218 105.8259 negative MGI_C57BL6J_5826475 Gm46838 NCBI_Gene:108168921 MGI:5826475 lncRNA gene predicted gene, 46838
3 gene 105.8709 105.9089 positive MGI_C57BL6J_104847 Adora3 NCBI_Gene:11542,ENSEMBL:ENSMUSG00000000562 MGI:104847 protein coding gene adenosine A3 receptor
3 gene 105.8709 105.9240 positive MGI_C57BL6J_5604098 Tmigd3 NCBI_Gene:69296,ENSEMBL:ENSMUSG00000074344 MGI:5604098 protein coding gene transmembrane and immunoglobulin domain containing 3
3 gene 105.9244 105.9329 negative MGI_C57BL6J_3588284 I830077J02Rik NCBI_Gene:433638,ENSEMBL:ENSMUSG00000074342 MGI:3588284 protein coding gene RIKEN cDNA I830077J02 gene
3 gene 105.9427 105.9602 negative MGI_C57BL6J_1100495 Atp5pb NCBI_Gene:11950,ENSEMBL:ENSMUSG00000000563 MGI:1100495 protein coding gene ATP synthase peripheral stalk-membrane subunit b
3 gene 105.9594 105.9700 positive MGI_C57BL6J_1917715 Wdr77 NCBI_Gene:70465,ENSEMBL:ENSMUSG00000000561 MGI:1917715 protein coding gene WD repeat domain 77
3 gene 105.9595 105.9846 positive MGI_C57BL6J_5663027 Gm42890 ENSEMBL:ENSMUSG00000105852 MGI:5663027 lncRNA gene predicted gene 42890
3 gene 105.9737 105.9874 positive MGI_C57BL6J_106661 Ovgp1 NCBI_Gene:12659,ENSEMBL:ENSMUSG00000074340 MGI:106661 protein coding gene oviductal glycoprotein 1
3 gene 105.9970 106.0146 negative MGI_C57BL6J_1923670 Pifo NCBI_Gene:100503311,ENSEMBL:ENSMUSG00000010136 MGI:1923670 protein coding gene primary cilia formation
3 gene 106.0016 106.0175 positive MGI_C57BL6J_5662859 Gm42722 ENSEMBL:ENSMUSG00000106093 MGI:5662859 lncRNA gene predicted gene 42722
3 gene 106.0079 106.0094 negative MGI_C57BL6J_5662858 Gm42721 ENSEMBL:ENSMUSG00000104592 MGI:5662858 lncRNA gene predicted gene 42721
3 gene 106.0169 106.0331 negative MGI_C57BL6J_2676649 Chil5 NCBI_Gene:229687,ENSEMBL:ENSMUSG00000043873 MGI:2676649 protein coding gene chitinase-like 5
3 pseudogene 106.0347 106.0351 positive MGI_C57BL6J_3782724 Gm4540 NCBI_Gene:100043594,ENSEMBL:ENSMUSG00000092072 MGI:3782724 pseudogene predicted gene 4540
3 pseudogene 106.0417 106.0448 negative MGI_C57BL6J_3779914 Gm9504 NCBI_Gene:102638412,ENSEMBL:ENSMUSG00000105277 MGI:3779914 pseudogene predicted gene 9504
3 pseudogene 106.0909 106.0915 positive MGI_C57BL6J_3782425 Gm4248 NCBI_Gene:100043129,ENSEMBL:ENSMUSG00000105051 MGI:3782425 pseudogene predicted pseudogene 4248
3 gene 106.1132 106.1321 positive MGI_C57BL6J_1932052 Chia1 NCBI_Gene:81600,ENSEMBL:ENSMUSG00000062778 MGI:1932052 protein coding gene chitinase, acidic 1
3 gene 106.1476 106.1676 negative MGI_C57BL6J_1330860 Chil3 NCBI_Gene:12655,ENSEMBL:ENSMUSG00000040809 MGI:1330860 protein coding gene chitinase-like 3
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 106.9032 107.0939 negative MGI_C57BL6J_5504123 Gm27008 NCBI_Gene:102639188,ENSEMBL:ENSMUSG00000098108 MGI:5504123 lncRNA gene predicted gene, 27008
3 gene 107.0362 107.0381 positive MGI_C57BL6J_96660 Kcna3 NCBI_Gene:16491,ENSEMBL:ENSMUSG00000047959 MGI:96660 protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 3
3 gene 107.0395 107.0543 positive MGI_C57BL6J_2139742 AI504432 NCBI_Gene:229694,ENSEMBL:ENSMUSG00000056145 MGI:2139742 lncRNA gene expressed sequence AI504432
3 gene 107.0549 107.0667 negative MGI_C57BL6J_5621597 Gm38712 NCBI_Gene:105242447 MGI:5621597 lncRNA gene predicted gene, 38712
3 gene 107.0909 107.1150 positive MGI_C57BL6J_96659 Kcna2 NCBI_Gene:16490,ENSEMBL:ENSMUSG00000040724 MGI:96659 protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 2
3 gene 107.0909 107.0984 positive MGI_C57BL6J_1924480 A930002I21Rik ENSEMBL:ENSMUSG00000050179 MGI:1924480 lncRNA gene RIKEN cDNA A930002I21 gene
3 gene 107.1831 107.1957 positive MGI_C57BL6J_3037820 Kcna10 NCBI_Gene:242151,ENSEMBL:ENSMUSG00000042861 MGI:3037820 protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 10
3 gene 107.2113 107.2217 negative MGI_C57BL6J_2684977 Cym NCBI_Gene:229697,ENSEMBL:ENSMUSG00000046213 MGI:2684977 protein coding gene chymosin
3 gene 107.2306 107.2347 positive MGI_C57BL6J_2442999 A630076J17Rik NCBI_Gene:319929,ENSEMBL:ENSMUSG00000094613 MGI:2442999 protein coding gene RIKEN cDNA A630076J17 gene
3 gene 107.2319 107.2397 negative MGI_C57BL6J_2180370 Prok1 NCBI_Gene:246691,ENSEMBL:ENSMUSG00000070368 MGI:2180370 protein coding gene prokineticin 1
3 gene 107.2789 107.2841 positive MGI_C57BL6J_1915826 Lamtor5 NCBI_Gene:68576,ENSEMBL:ENSMUSG00000087260 MGI:1915826 protein coding gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 5
3 gene 107.2912 107.3121 positive MGI_C57BL6J_2385183 Slc16a4 NCBI_Gene:229699,ENSEMBL:ENSMUSG00000027896 MGI:2385183 protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 4
3 gene 107.3055 107.3350 negative MGI_C57BL6J_2443205 Rbm15 NCBI_Gene:229700,ENSEMBL:ENSMUSG00000048109 MGI:2443205 protein coding gene RNA binding motif protein 15
3 pseudogene 107.3430 107.3437 positive MGI_C57BL6J_3647225 Gm5279 NCBI_Gene:383901,ENSEMBL:ENSMUSG00000105532 MGI:3647225 pseudogene predicted gene 5279
3 gene 107.3648 107.3731 positive MGI_C57BL6J_5594859 Gm35700 NCBI_Gene:102639370 MGI:5594859 lncRNA gene predicted gene, 35700
3 gene 107.3808 107.3826 positive MGI_C57BL6J_5623005 Gm40120 NCBI_Gene:105244526 MGI:5623005 lncRNA gene predicted gene, 40120
3 gene 107.4159 107.4162 negative MGI_C57BL6J_5454160 Gm24383 ENSEMBL:ENSMUSG00000084640 MGI:5454160 unclassified non-coding RNA gene predicted gene, 24383
3 gene 107.4383 107.4596 negative MGI_C57BL6J_96670 Kcnc4 NCBI_Gene:99738,ENSEMBL:ENSMUSG00000027895 MGI:96670 protein coding gene potassium voltage gated channel, Shaw-related subfamily, member 4
3 gene 107.4403 107.4430 negative MGI_C57BL6J_2443689 A330043J11Rik NA NA unclassified gene RIKEN cDNA A330043J11 gene
3 gene 107.4675 107.5180 negative MGI_C57BL6J_2442535 Slc6a17 NCBI_Gene:229706,ENSEMBL:ENSMUSG00000027894 MGI:2442535 protein coding gene solute carrier family 6 (neurotransmitter transporter), member 17
3 gene 107.5479 107.5542 positive MGI_C57BL6J_5595256 Gm36097 NCBI_Gene:102639893 MGI:5595256 lncRNA gene predicted gene, 36097
3 gene 107.5537 107.5551 negative MGI_C57BL6J_1914841 Ubl4b NCBI_Gene:67591,ENSEMBL:ENSMUSG00000055891 MGI:1914841 protein coding gene ubiquitin-like 4B
3 gene 107.5950 107.6059 positive MGI_C57BL6J_1277097 Alx3 NCBI_Gene:11694,ENSEMBL:ENSMUSG00000014603 MGI:1277097 protein coding gene aristaless-like homeobox 3
3 gene 107.6125 107.6317 negative MGI_C57BL6J_2443884 Strip1 NCBI_Gene:229707,ENSEMBL:ENSMUSG00000014601 MGI:2443884 protein coding gene striatin interacting protein 1
3 gene 107.6313 107.6348 positive MGI_C57BL6J_3779172 Gm10961 NCBI_Gene:102639972,ENSEMBL:ENSMUSG00000078604 MGI:3779172 lncRNA gene predicted gene 10961
3 gene 107.6631 107.6966 negative MGI_C57BL6J_2385184 Ahcyl1 NCBI_Gene:229709,ENSEMBL:ENSMUSG00000027893 MGI:2385184 protein coding gene S-adenosylhomocysteine hydrolase-like 1
3 gene 107.6967 107.8130 positive MGI_C57BL6J_5623006 Gm40121 NCBI_Gene:105244527 MGI:5623006 lncRNA gene predicted gene, 40121
3 gene 107.7410 107.7605 negative MGI_C57BL6J_1339753 Csf1 NCBI_Gene:12977,ENSEMBL:ENSMUSG00000014599 MGI:1339753 protein coding gene colony stimulating factor 1 (macrophage)
3 pseudogene 107.7819 107.7825 positive MGI_C57BL6J_5663370 Gm43233 ENSEMBL:ENSMUSG00000106531 MGI:5663370 pseudogene predicted gene 43233
3 gene 107.8202 107.8335 negative MGI_C57BL6J_5595370 Gm36211 ENSEMBL:ENSMUSG00000106426 MGI:5595370 lncRNA gene predicted gene, 36211
3 pseudogene 107.8680 107.8687 negative MGI_C57BL6J_3645483 Gm5075 NCBI_Gene:280047,ENSEMBL:ENSMUSG00000105944 MGI:3645483 pseudogene predicted gene 5075
3 gene 107.8739 107.8929 positive MGI_C57BL6J_2139743 Eps8l3 NCBI_Gene:99662,ENSEMBL:ENSMUSG00000040600 MGI:2139743 protein coding gene EPS8-like 3
3 gene 107.8748 107.8755 positive MGI_C57BL6J_1922590 4930554G22Rik ENSEMBL:ENSMUSG00000106359 MGI:1922590 unclassified gene RIKEN cDNA 4930554G22 gene
3 gene 107.8860 107.8878 positive MGI_C57BL6J_5663882 Gm43745 ENSEMBL:ENSMUSG00000105456 MGI:5663882 unclassified gene predicted gene 43745
3 gene 107.8860 107.8878 negative MGI_C57BL6J_3642497 Gm10667 NA NA unclassified gene predicted gene 10667
3 gene 107.8889 107.8962 negative MGI_C57BL6J_3584041 4933431E20Rik NCBI_Gene:329735,ENSEMBL:ENSMUSG00000086968 MGI:3584041 lncRNA gene RIKEN cDNA 4933431E20 gene
3 gene 107.8958 107.8987 positive MGI_C57BL6J_1309466 Gstm5 NCBI_Gene:14866,ENSEMBL:ENSMUSG00000004032 MGI:1309466 protein coding gene glutathione S-transferase, mu 5
3 pseudogene 107.9068 107.9113 negative MGI_C57BL6J_3779925 Gm9515 NCBI_Gene:671031,ENSEMBL:ENSMUSG00000105872 MGI:3779925 pseudogene predicted gene 9515
3 pseudogene 107.9197 107.9198 positive MGI_C57BL6J_3650952 Gm12489 ENSEMBL:ENSMUSG00000082720 MGI:3650952 pseudogene predicted gene 12489
3 gene 107.9263 107.9319 negative MGI_C57BL6J_1915562 Gstm7 NCBI_Gene:68312,ENSEMBL:ENSMUSG00000004035 MGI:1915562 protein coding gene glutathione S-transferase, mu 7
3 gene 107.9388 107.9535 negative MGI_C57BL6J_1309467 Gstm6 NCBI_Gene:14867,ENSEMBL:ENSMUSG00000068762 MGI:1309467 protein coding gene glutathione S-transferase, mu 6
3 pseudogene 107.9508 107.9531 negative MGI_C57BL6J_3702525 Gm12494 ENSEMBL:ENSMUSG00000089664 MGI:3702525 pseudogene predicted gene 12494
3 gene 107.9637 107.9693 negative MGI_C57BL6J_106026 Gstm3 NCBI_Gene:14864,ENSEMBL:ENSMUSG00000004038 MGI:106026 protein coding gene glutathione S-transferase, mu 3
3 pseudogene 107.9796 107.9800 positive MGI_C57BL6J_3650111 Gm12497 NCBI_Gene:624701,ENSEMBL:ENSMUSG00000049231 MGI:3650111 pseudogene predicted pseudogene 12497
3 gene 107.9817 107.9865 negative MGI_C57BL6J_95861 Gstm2 NCBI_Gene:14863,ENSEMBL:ENSMUSG00000040562 MGI:95861 protein coding gene glutathione S-transferase, mu 2
3 pseudogene 107.9994 107.9998 negative MGI_C57BL6J_5663883 Gm43746 ENSEMBL:ENSMUSG00000106614 MGI:5663883 pseudogene predicted gene 43746
3 gene 108.0122 108.0180 negative MGI_C57BL6J_95860 Gstm1 NCBI_Gene:14862,ENSEMBL:ENSMUSG00000058135 MGI:95860 protein coding gene glutathione S-transferase, mu 1
3 gene 108.0183 108.0259 negative MGI_C57BL6J_3650533 Gm12498 NCBI_Gene:108168891,ENSEMBL:ENSMUSG00000087357 MGI:3650533 lncRNA gene predicted gene 12498
3 pseudogene 108.0197 108.0204 positive MGI_C57BL6J_3650307 Gm12502 NCBI_Gene:102640327,ENSEMBL:ENSMUSG00000083627 MGI:3650307 pseudogene predicted gene 12502
3 pseudogene 108.0296 108.0314 negative MGI_C57BL6J_3650532 Gm12499 ENSEMBL:ENSMUSG00000081688 MGI:3650532 pseudogene predicted gene 12499
3 gene 108.0306 108.0451 negative MGI_C57BL6J_95862 Gstm4 NCBI_Gene:14865,ENSEMBL:ENSMUSG00000027890 MGI:95862 protein coding gene glutathione S-transferase, mu 4
3 gene 108.0308 108.0370 negative MGI_C57BL6J_5595657 Gm36498 NCBI_Gene:102640435 MGI:5595657 lncRNA gene predicted gene, 36498
3 gene 108.0340 108.0342 positive MGI_C57BL6J_5455369 Gm25592 ENSEMBL:ENSMUSG00000064569 MGI:5455369 snoRNA gene predicted gene, 25592
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 108.8537 108.8900 negative MGI_C57BL6J_2443535 Fndc7 NCBI_Gene:320181,ENSEMBL:ENSMUSG00000045326 MGI:2443535 protein coding gene fibronectin type III domain containing 7
3 gene 108.9028 108.9118 negative MGI_C57BL6J_1914171 Prpf38b NCBI_Gene:66921,ENSEMBL:ENSMUSG00000027881 MGI:1914171 protein coding gene PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
3 gene 108.9385 108.9608 positive MGI_C57BL6J_1913965 Henmt1 NCBI_Gene:66715,ENSEMBL:ENSMUSG00000045662 MGI:1913965 protein coding gene HEN1 methyltransferase homolog 1 (Arabidopsis)
3 gene 108.9399 108.9404 negative MGI_C57BL6J_3704224 Gm9857 ENSEMBL:ENSMUSG00000051638 MGI:3704224 protein coding gene predicted gene 9857
3 gene 108.9710 109.0276 negative MGI_C57BL6J_3036259 Fam102b NCBI_Gene:329739,ENSEMBL:ENSMUSG00000040339 MGI:3036259 protein coding gene family with sequence similarity 102, member B
3 gene 109.0000 109.0021 positive MGI_C57BL6J_5663358 Gm43221 ENSEMBL:ENSMUSG00000106108 MGI:5663358 lncRNA gene predicted gene 43221
3 gene 109.0556 109.0557 positive MGI_C57BL6J_5690776 Gm44384 ENSEMBL:ENSMUSG00000105371 MGI:5690776 miRNA gene predicted gene, 44384
3 gene 109.0557 109.0654 positive MGI_C57BL6J_5595937 Gm36778 NCBI_Gene:102640795 MGI:5595937 lncRNA gene predicted gene, 36778
3 gene 109.0786 109.0804 negative MGI_C57BL6J_1924115 4930408K08Rik ENSEMBL:ENSMUSG00000105638 MGI:1924115 lncRNA gene RIKEN cDNA 4930408K08 gene
3 gene 109.0805 109.1167 positive MGI_C57BL6J_1921936 Slc25a54 NCBI_Gene:74686,ENSEMBL:ENSMUSG00000027880 MGI:1921936 protein coding gene solute carrier family 25, member 54
3 gene 109.1205 109.1231 negative MGI_C57BL6J_5011576 Gm19391 NCBI_Gene:105244530,ENSEMBL:ENSMUSG00000105139 MGI:5011576 lncRNA gene predicted gene, 19391
3 gene 109.1231 109.1685 positive MGI_C57BL6J_1917160 Slc25a24 NCBI_Gene:229731,ENSEMBL:ENSMUSG00000040322 MGI:1917160 protein coding gene solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24
3 pseudogene 109.1920 109.1929 negative MGI_C57BL6J_3651348 Gm13865 NCBI_Gene:100417395,ENSEMBL:ENSMUSG00000083717 MGI:3651348 pseudogene predicted gene 13865
3 gene 109.3403 109.6857 positive MGI_C57BL6J_1888518 Vav3 NCBI_Gene:57257,ENSEMBL:ENSMUSG00000033721 MGI:1888518 protein coding gene vav 3 oncogene
3 gene 109.4509 109.4547 positive MGI_C57BL6J_2444726 C130083B21Rik NA NA unclassified gene RIKEN cDNA C130083B21 gene
3 gene 109.7800 110.1440 negative MGI_C57BL6J_1934028 Ntng1 NCBI_Gene:80883,ENSEMBL:ENSMUSG00000059857 MGI:1934028 protein coding gene netrin G1
3 gene 109.8638 109.8639 positive MGI_C57BL6J_5455458 Gm25681 ENSEMBL:ENSMUSG00000065872 MGI:5455458 snRNA gene predicted gene, 25681
3 pseudogene 109.9074 109.9079 positive MGI_C57BL6J_3650178 Gm12535 ENSEMBL:ENSMUSG00000082624 MGI:3650178 pseudogene predicted gene 12535
3 gene 110.2439 110.2446 negative MGI_C57BL6J_5662653 Gm42516 ENSEMBL:ENSMUSG00000105639 MGI:5662653 unclassified gene predicted gene 42516
3 gene 110.2461 110.2510 negative MGI_C57BL6J_2139971 Prmt6 NCBI_Gene:99890,ENSEMBL:ENSMUSG00000049300 MGI:2139971 protein coding gene protein arginine N-methyltransferase 6
3 gene 110.2500 110.2537 positive MGI_C57BL6J_3697343 C130013H08Rik ENSEMBL:ENSMUSG00000105509 MGI:3697343 lncRNA gene RIKEN cDNA C130013H08 gene
3 pseudogene 110.2771 110.2775 negative MGI_C57BL6J_5663542 Gm43405 ENSEMBL:ENSMUSG00000104944 MGI:5663542 pseudogene predicted gene 43405
3 pseudogene 110.3991 110.3998 positive MGI_C57BL6J_5011370 Gm19185 NCBI_Gene:100418401,ENSEMBL:ENSMUSG00000105859 MGI:5011370 pseudogene predicted gene, 19185
3 pseudogene 110.5641 110.5644 negative MGI_C57BL6J_5663543 Gm43406 ENSEMBL:ENSMUSG00000105121 MGI:5663543 pseudogene predicted gene 43406
3 gene 110.5644 110.5645 negative MGI_C57BL6J_5455853 Gm26076 ENSEMBL:ENSMUSG00000077253 MGI:5455853 snRNA gene predicted gene, 26076
3 gene 110.6343 110.6369 positive MGI_C57BL6J_5663541 Gm43404 ENSEMBL:ENSMUSG00000106650 MGI:5663541 unclassified gene predicted gene 43404
3 pseudogene 111.1085 111.1088 positive MGI_C57BL6J_5663544 Gm43407 ENSEMBL:ENSMUSG00000106487 MGI:5663544 pseudogene predicted gene 43407
3 pseudogene 111.3211 111.3230 negative MGI_C57BL6J_3647777 Gm9314 NCBI_Gene:668712,ENSEMBL:ENSMUSG00000106100 MGI:3647777 pseudogene predicted gene 9314
3 gene 111.7895 111.7911 positive MGI_C57BL6J_5663042 Gm42905 ENSEMBL:ENSMUSG00000105882 MGI:5663042 unclassified gene predicted gene 42905
3 pseudogene 111.8094 111.8098 negative MGI_C57BL6J_5663991 Gm43854 ENSEMBL:ENSMUSG00000104711 MGI:5663991 pseudogene predicted gene 43854
3 gene 111.8819 112.0820 positive MGI_C57BL6J_3779614 Gm6602 NCBI_Gene:625585,ENSEMBL:ENSMUSG00000104543 MGI:3779614 lncRNA gene predicted gene 6602
3 gene 112.1989 112.1990 negative MGI_C57BL6J_5455296 Gm25519 ENSEMBL:ENSMUSG00000089017 MGI:5455296 snoRNA gene predicted gene, 25519
3 pseudogene 112.2027 112.2030 negative MGI_C57BL6J_5663990 Gm43853 ENSEMBL:ENSMUSG00000105507 MGI:5663990 pseudogene predicted gene 43853
3 pseudogene 112.3023 112.3033 positive MGI_C57BL6J_3646906 Gm4859 NCBI_Gene:229746,ENSEMBL:ENSMUSG00000105077 MGI:3646906 pseudogene predicted gene 4859
3 pseudogene 112.3309 112.3318 negative MGI_C57BL6J_3647781 Gm9317 NCBI_Gene:668717,ENSEMBL:ENSMUSG00000105073 MGI:3647781 pseudogene predicted gene 9317
3 pseudogene 112.5916 112.5920 positive MGI_C57BL6J_5662663 Gm42526 ENSEMBL:ENSMUSG00000105785 MGI:5662663 pseudogene predicted gene 42526
3 pseudogene 112.7668 112.7670 negative MGI_C57BL6J_5663724 Gm43587 ENSEMBL:ENSMUSG00000106666 MGI:5663724 pseudogene predicted gene 43587
3 pseudogene 113.0195 113.0230 positive MGI_C57BL6J_3051682 Utp14b-ps1 NCBI_Gene:383905,ENSEMBL:ENSMUSG00000105588 MGI:3051682 pseudogene UTP14B small subunit processome component, pseudogene 1
3 pseudogene 113.0525 113.0543 negative MGI_C57BL6J_3644344 Gm5548 NCBI_Gene:102632213,ENSEMBL:ENSMUSG00000045952 MGI:3644344 pseudogene predicted pseudogene 5548
3 pseudogene 113.0558 113.0566 negative MGI_C57BL6J_5618687 Gm38395 NCBI_Gene:100416050,ENSEMBL:ENSMUSG00000105665 MGI:5618687 pseudogene predicted gene, 38395
3 pseudogene 113.1477 113.1567 negative MGI_C57BL6J_104547 Amy2b NCBI_Gene:545562,ENSEMBL:ENSMUSG00000083079 MGI:104547 pseudogene amylase 2b
3 pseudogene 113.1822 113.2067 negative MGI_C57BL6J_104546 Amy2-ps1 NCBI_Gene:668723,ENSEMBL:ENSMUSG00000081506 MGI:104546 pseudogene amylase 2, pseudogene 1
3 gene 113.2472 113.2477 positive MGI_C57BL6J_1916346 1810008N23Rik NA NA unclassified non-coding RNA gene RIKEN cDNA 1810008N23 gene
3 gene 113.2472 113.2588 negative MGI_C57BL6J_88020 Amy2a5 NCBI_Gene:109959,ENSEMBL:ENSMUSG00000074268 MGI:88020 protein coding gene amylase 2a5
3 gene 113.2798 113.2914 negative MGI_C57BL6J_3711258 Amy2a4 NCBI_Gene:100043684,ENSEMBL:ENSMUSG00000096770 MGI:3711258 protein coding gene amylase 2a4
3 gene 113.3124 113.3241 negative MGI_C57BL6J_3714985 Amy2a3 NCBI_Gene:100043686,ENSEMBL:ENSMUSG00000093931 MGI:3714985 protein coding gene amylase 2a3
3 gene 113.3450 113.3567 negative MGI_C57BL6J_3711220 Amy2a2 NCBI_Gene:100043688,ENSEMBL:ENSMUSG00000096569 MGI:3711220 protein coding gene amylase 2a2
3 gene 113.5281 113.5324 negative MGI_C57BL6J_104548 Amy2a1 NCBI_Gene:100043207,ENSEMBL:ENSMUSG00000070360 MGI:104548 protein coding gene amylase 2a1
3 gene 113.5434 113.5458 negative MGI_C57BL6J_5826457 Gm46820 NCBI_Gene:108168892 MGI:5826457 lncRNA gene predicted gene, 46820
3 gene 113.5557 113.6067 negative MGI_C57BL6J_88019 Amy1 NCBI_Gene:11722,ENSEMBL:ENSMUSG00000074264 MGI:88019 protein coding gene amylase 1, salivary
3 gene 113.6051 113.6301 negative MGI_C57BL6J_1914475 Rnpc3 NCBI_Gene:67225,ENSEMBL:ENSMUSG00000027981 MGI:1914475 protein coding gene RNA-binding region (RNP1, RRM) containing 3
3 gene 113.6299 113.6313 positive MGI_C57BL6J_3698878 C530020B09Rik NA NA unclassified non-coding RNA gene RIKEN cDNA C530020B09 gene
3 pseudogene 113.6316 113.6322 negative MGI_C57BL6J_5010139 Gm17954 NCBI_Gene:100416168,ENSEMBL:ENSMUSG00000105836 MGI:5010139 pseudogene predicted gene, 17954
3 pseudogene 113.7286 113.7295 positive MGI_C57BL6J_5009939 Gm17775 NCBI_Gene:100046591,ENSEMBL:ENSMUSG00000106454 MGI:5009939 pseudogene predicted gene, 17775
3 pseudogene 113.8547 113.8564 positive MGI_C57BL6J_5010348 Gm18163 NCBI_Gene:100416594,ENSEMBL:ENSMUSG00000106084 MGI:5010348 pseudogene predicted gene, 18163
3 gene 114.0305 114.2208 positive MGI_C57BL6J_88446 Col11a1 NCBI_Gene:12814,ENSEMBL:ENSMUSG00000027966 MGI:88446 protein coding gene collagen, type XI, alpha 1
3 pseudogene 114.5444 114.5448 negative MGI_C57BL6J_5663886 Gm43749 ENSEMBL:ENSMUSG00000106452 MGI:5663886 pseudogene predicted gene 43749
3 gene 114.8242 114.8243 negative MGI_C57BL6J_5453527 Gm23750 ENSEMBL:ENSMUSG00000077410 MGI:5453527 snoRNA gene predicted gene, 23750
3 pseudogene 114.8280 114.8287 negative MGI_C57BL6J_5011332 Gm19147 NCBI_Gene:100418337,ENSEMBL:ENSMUSG00000105225 MGI:5011332 pseudogene predicted gene, 19147
3 gene 114.9041 115.1258 positive MGI_C57BL6J_2387329 Olfm3 NCBI_Gene:229759,ENSEMBL:ENSMUSG00000027965 MGI:2387329 protein coding gene olfactomedin 3
3 pseudogene 115.1716 115.1721 negative MGI_C57BL6J_5010614 Gm18429 NCBI_Gene:100417157,ENSEMBL:ENSMUSG00000106510 MGI:5010614 pseudogene predicted gene, 18429
3 gene 115.3916 115.3917 positive MGI_C57BL6J_5452114 Gm22337 ENSEMBL:ENSMUSG00000088346 MGI:5452114 snoRNA gene predicted gene, 22337
3 gene 115.4840 115.4841 negative MGI_C57BL6J_5455124 Gm25347 ENSEMBL:ENSMUSG00000080676 MGI:5455124 miRNA gene predicted gene, 25347
3 pseudogene 115.5186 115.5190 positive MGI_C57BL6J_5663806 Gm43669 ENSEMBL:ENSMUSG00000105829 MGI:5663806 pseudogene predicted gene 43669
3 gene 115.6367 115.6417 negative MGI_C57BL6J_5623009 Gm40124 NCBI_Gene:105244531 MGI:5623009 lncRNA gene predicted gene, 40124
3 gene 115.7104 115.7151 negative MGI_C57BL6J_1096355 S1pr1 NCBI_Gene:13609,ENSEMBL:ENSMUSG00000045092 MGI:1096355 protein coding gene sphingosine-1-phosphate receptor 1
3 gene 115.7151 115.7167 positive MGI_C57BL6J_3642568 Gm9889 ENSEMBL:ENSMUSG00000052769 MGI:3642568 lncRNA gene predicted gene 9889
3 gene 115.8816 115.8881 negative MGI_C57BL6J_1915411 A930005H10Rik NCBI_Gene:68161,ENSEMBL:ENSMUSG00000054426 MGI:1915411 lncRNA gene RIKEN cDNA A930005H10 gene
3 gene 115.8878 115.9344 positive MGI_C57BL6J_1916990 Dph5 NCBI_Gene:69740,ENSEMBL:ENSMUSG00000033554 MGI:1916990 protein coding gene diphthamide biosynthesis 5
3 gene 115.8893 115.8923 positive MGI_C57BL6J_2442378 A230060L02Rik NA NA unclassified gene RIKEN cDNA A230060L02 gene
3 gene 115.9104 115.9105 positive MGI_C57BL6J_5662824 Gm42687 ENSEMBL:ENSMUSG00000105108 MGI:5662824 unclassified gene predicted gene 42687
3 gene 115.9138 115.9141 negative MGI_C57BL6J_5663244 Gm43107 ENSEMBL:ENSMUSG00000105017 MGI:5663244 unclassified gene predicted gene 43107
3 gene 115.9139 115.9142 positive MGI_C57BL6J_5663245 Gm43108 ENSEMBL:ENSMUSG00000104803 MGI:5663245 unclassified gene predicted gene 43108
3 gene 115.9390 116.0074 negative MGI_C57BL6J_1913750 Slc30a7 NCBI_Gene:66500,ENSEMBL:ENSMUSG00000054414 MGI:1913750 protein coding gene solute carrier family 30 (zinc transporter), member 7
3 pseudogene 115.9425 115.9431 positive MGI_C57BL6J_5663243 Gm43106 ENSEMBL:ENSMUSG00000104723 MGI:5663243 pseudogene predicted gene 43106
3 pseudogene 115.9431 115.9443 positive MGI_C57BL6J_3779621 Gm6649 NCBI_Gene:626061,ENSEMBL:ENSMUSG00000105645 MGI:3779621 pseudogene predicted gene 6649
3 gene 115.9799 115.9800 positive MGI_C57BL6J_3837039 Mir669n miRBase:MI0009951,NCBI_Gene:100316705,ENSEMBL:ENSMUSG00000089261 MGI:3837039 miRNA gene microRNA 669n
3 gene 116.0074 116.0290 positive MGI_C57BL6J_1889574 Extl2 NCBI_Gene:58193,ENSEMBL:ENSMUSG00000027963 MGI:1889574 protein coding gene exostoses (multiple)-like 2
3 gene 116.0658 116.0659 negative MGI_C57BL6J_5456121 Gm26344 ENSEMBL:ENSMUSG00000077741 MGI:5456121 snoRNA gene predicted gene, 26344
3 gene 116.0936 116.1024 positive MGI_C57BL6J_5590543 Gm31384 NCBI_Gene:102633598 MGI:5590543 lncRNA gene predicted gene, 31384
3 gene 116.1099 116.1297 negative MGI_C57BL6J_98926 Vcam1 NCBI_Gene:22329,ENSEMBL:ENSMUSG00000027962 MGI:98926 protein coding gene vascular cell adhesion molecule 1
3 gene 116.1285 116.1410 positive MGI_C57BL6J_5663246 Gm43109 ENSEMBL:ENSMUSG00000104653 MGI:5663246 lncRNA gene predicted gene 43109
3 gene 116.1349 116.1491 positive MGI_C57BL6J_1924313 5330425B07Rik NCBI_Gene:102633677,ENSEMBL:ENSMUSG00000105729 MGI:1924313 lncRNA gene RIKEN cDNA 5330425B07 gene
3 gene 116.1505 116.1658 positive MGI_C57BL6J_5477038 Gm26544 NCBI_Gene:102633872,ENSEMBL:ENSMUSG00000097362 MGI:5477038 lncRNA gene predicted gene, 26544
3 gene 116.1982 116.2036 positive MGI_C57BL6J_5590810 Gm31651 NCBI_Gene:102633953,ENSEMBL:ENSMUSG00000104607 MGI:5590810 lncRNA gene predicted gene, 31651
3 gene 116.2497 116.2535 negative MGI_C57BL6J_1927653 Gpr88 NCBI_Gene:64378,ENSEMBL:ENSMUSG00000068696 MGI:1927653 protein coding gene G-protein coupled receptor 88
3 gene 116.2579 116.2700 positive MGI_C57BL6J_5826476 Gm46839 NCBI_Gene:108168922 MGI:5826476 lncRNA gene predicted gene, 46839
3 gene 116.2726 116.4287 negative MGI_C57BL6J_2442676 Cdc14a NCBI_Gene:229776,ENSEMBL:ENSMUSG00000033502 MGI:2442676 protein coding gene CDC14 cell division cycle 14A
3 gene 116.3501 116.3529 positive MGI_C57BL6J_5579857 Gm29151 ENSEMBL:ENSMUSG00000106005 MGI:5579857 lncRNA gene predicted gene 29151
3 gene 116.4242 116.4354 positive MGI_C57BL6J_5623010 Gm40125 NCBI_Gene:105244532 MGI:5623010 lncRNA gene predicted gene, 40125
3 gene 116.4484 116.4486 negative MGI_C57BL6J_5452138 Gm22361 ENSEMBL:ENSMUSG00000089060 MGI:5452138 snRNA gene predicted gene, 22361
3 gene 116.4666 116.4667 positive MGI_C57BL6J_5456135 Gm26358 ENSEMBL:ENSMUSG00000088840 MGI:5456135 snoRNA gene predicted gene, 26358
3 gene 116.4890 116.5082 negative MGI_C57BL6J_1913618 Rtca NCBI_Gene:66368,ENSEMBL:ENSMUSG00000000339 MGI:1913618 protein coding gene RNA 3’-terminal phosphate cyclase
3 gene 116.4890 116.4934 positive MGI_C57BL6J_5477024 Gm26530 ENSEMBL:ENSMUSG00000097737 MGI:5477024 lncRNA gene predicted gene, 26530
3 gene 116.5131 116.5500 positive MGI_C57BL6J_105386 Dbt NCBI_Gene:13171,ENSEMBL:ENSMUSG00000000340 MGI:105386 protein coding gene dihydrolipoamide branched chain transacylase E2
3 pseudogene 116.5273 116.5287 negative MGI_C57BL6J_3782779 Gm4596 NCBI_Gene:100043702,ENSEMBL:ENSMUSG00000082394 MGI:3782779 pseudogene predicted gene 4596
3 gene 116.5321 116.5326 positive MGI_C57BL6J_5663788 Gm43651 ENSEMBL:ENSMUSG00000105992 MGI:5663788 unclassified gene predicted gene 43651
3 pseudogene 116.5606 116.5615 negative MGI_C57BL6J_3708640 Gm9761 NCBI_Gene:100043705,ENSEMBL:ENSMUSG00000034437 MGI:3708640 pseudogene predicted gene 9761
3 gene 116.5630 116.5831 positive MGI_C57BL6J_1924557 Lrrc39 NCBI_Gene:109245,ENSEMBL:ENSMUSG00000027961 MGI:1924557 protein coding gene leucine rich repeat containing 39
3 gene 116.5721 116.5744 negative MGI_C57BL6J_5663077 Gm42940 ENSEMBL:ENSMUSG00000106025 MGI:5663077 unclassified gene predicted gene 42940
3 gene 116.5766 116.6146 negative MGI_C57BL6J_1925219 Trmt13 NCBI_Gene:229780,ENSEMBL:ENSMUSG00000033439 MGI:1925219 protein coding gene tRNA methyltransferase 13
3 gene 116.5950 116.6310 positive MGI_C57BL6J_1920026 Sass6 NCBI_Gene:72776,ENSEMBL:ENSMUSG00000027959 MGI:1920026 protein coding gene SAS-6 centriolar assembly protein
3 gene 116.6292 116.6310 negative MGI_C57BL6J_5663030 Gm42893 ENSEMBL:ENSMUSG00000106415 MGI:5663030 lncRNA gene predicted gene 42893
3 gene 116.6312 116.6627 negative MGI_C57BL6J_1201609 Mfsd14a NCBI_Gene:15247,ENSEMBL:ENSMUSG00000089911 MGI:1201609 protein coding gene major facilitator superfamily domain containing 14A
3 gene 116.6317 116.6322 positive MGI_C57BL6J_5662594 Gm42457 ENSEMBL:ENSMUSG00000105339 MGI:5662594 lncRNA gene predicted gene 42457
3 gene 116.6419 116.6813 negative MGI_C57BL6J_5663328 Gm43191 ENSEMBL:ENSMUSG00000105103 MGI:5663328 protein coding gene predicted gene 43191
3 gene 116.6637 116.6642 positive MGI_C57BL6J_1925434 4930512P04Rik ENSEMBL:ENSMUSG00000106125 MGI:1925434 lncRNA gene RIKEN cDNA 4930512P04 gene
3 gene 116.6695 116.7137 negative MGI_C57BL6J_1917648 Slc35a3 NCBI_Gene:229782,ENSEMBL:ENSMUSG00000027957 MGI:1917648 protein coding gene solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
3 gene 116.6904 116.6934 negative MGI_C57BL6J_5623011 Gm40126 NCBI_Gene:105244533 MGI:5623011 lncRNA gene predicted gene, 40126
3 gene 116.7400 116.8082 negative MGI_C57BL6J_1924809 Agl NCBI_Gene:77559,ENSEMBL:ENSMUSG00000033400 MGI:1924809 protein coding gene amylo-1,6-glucosidase, 4-alpha-glucanotransferase
3 gene 116.8188 116.8190 positive MGI_C57BL6J_5663657 Gm43520 ENSEMBL:ENSMUSG00000106128 MGI:5663657 unclassified gene predicted gene 43520
3 gene 116.8223 116.8225 negative MGI_C57BL6J_5663658 Gm43521 ENSEMBL:ENSMUSG00000106511 MGI:5663658 unclassified gene predicted gene 43521
3 gene 116.8230 116.8298 positive MGI_C57BL6J_5623012 Gm40127 NCBI_Gene:105244534 MGI:5623012 lncRNA gene predicted gene, 40127
3 gene 116.8354 116.8415 negative MGI_C57BL6J_5623013 Gm40128 NCBI_Gene:105244535 MGI:5623013 lncRNA gene predicted gene, 40128
3 pseudogene 116.8446 116.8450 positive MGI_C57BL6J_5588895 Gm29736 NCBI_Gene:101055867,ENSEMBL:ENSMUSG00000105250 MGI:5588895 pseudogene predicted gene, 29736
3 pseudogene 116.8469 116.8473 positive MGI_C57BL6J_5663679 Gm43542 ENSEMBL:ENSMUSG00000105241 MGI:5663679 pseudogene predicted gene 43542
3 gene 116.8595 116.9082 positive MGI_C57BL6J_108076 Frrs1 NCBI_Gene:20321,ENSEMBL:ENSMUSG00000033386 MGI:108076 protein coding gene ferric-chelate reductase 1
3 gene 116.8695 116.8708 positive MGI_C57BL6J_1924370 9030201C23Rik NA NA unclassified gene RIKEN cDNA 9030201C23 gene
3 gene 116.9183 116.9690 negative MGI_C57BL6J_2148896 Palmd NCBI_Gene:114301,ENSEMBL:ENSMUSG00000033377 MGI:2148896 protein coding gene palmdelphin
3 gene 116.9404 116.9443 negative MGI_C57BL6J_5663029 Gm42892 ENSEMBL:ENSMUSG00000106073 MGI:5663029 unclassified gene predicted gene 42892
3 gene 116.9531 116.9601 positive MGI_C57BL6J_5591307 Gm32148 NCBI_Gene:102634607 MGI:5591307 lncRNA gene predicted gene, 32148
3 gene 116.9683 116.9844 positive MGI_C57BL6J_1921904 4930455H04Rik NCBI_Gene:74654,ENSEMBL:ENSMUSG00000080907 MGI:1921904 protein coding gene RIKEN cDNA 4930455H04 gene
3 pseudogene 116.9988 116.9996 negative MGI_C57BL6J_3643926 Gm9332 NCBI_Gene:668749,ENSEMBL:ENSMUSG00000105221 MGI:3643926 pseudogene predicted gene 9332
3 gene 117.0605 117.0778 negative MGI_C57BL6J_1920612 1700061I17Rik NCBI_Gene:433646,ENSEMBL:ENSMUSG00000028009 MGI:1920612 lncRNA gene RIKEN cDNA 1700061I17 gene
3 pseudogene 117.0741 117.0748 negative MGI_C57BL6J_5010081 Gm17896 NCBI_Gene:100416059 MGI:5010081 pseudogene predicted gene, 17896
3 pseudogene 117.1008 117.1015 negative MGI_C57BL6J_5010615 Gm18430 NCBI_Gene:100417158,ENSEMBL:ENSMUSG00000106343 MGI:5010615 pseudogene predicted gene, 18430
3 pseudogene 117.1759 117.1768 positive MGI_C57BL6J_3780039 Gm9632 NCBI_Gene:674908,ENSEMBL:ENSMUSG00000106314 MGI:3780039 pseudogene predicted gene 9632
3 pseudogene 117.2229 117.2236 negative MGI_C57BL6J_5011428 Gm19243 NCBI_Gene:100462736,ENSEMBL:ENSMUSG00000105914 MGI:5011428 pseudogene predicted gene, 19243
3 gene 117.2346 117.2562 positive MGI_C57BL6J_5591375 Gm32216 NCBI_Gene:102634688 MGI:5591375 lncRNA gene predicted gene, 32216
3 gene 117.2510 117.2631 negative MGI_C57BL6J_5623015 Gm40130 NCBI_Gene:105244537 MGI:5623015 lncRNA gene predicted gene, 40130
3 gene 117.2551 117.2558 positive MGI_C57BL6J_5663028 Gm42891 ENSEMBL:ENSMUSG00000106342 MGI:5663028 lncRNA gene predicted gene 42891
3 gene 117.3191 117.3609 negative MGI_C57BL6J_106530 Plppr4 NCBI_Gene:229791,ENSEMBL:ENSMUSG00000044667 MGI:106530 protein coding gene phospholipid phosphatase related 4
3 gene 117.3229 117.3230 positive MGI_C57BL6J_5452185 Gm22408 ENSEMBL:ENSMUSG00000092666 MGI:5452185 miRNA gene predicted gene, 22408
3 gene 117.5710 117.6895 positive MGI_C57BL6J_1923019 Plppr5 NCBI_Gene:75769,ENSEMBL:ENSMUSG00000033342 MGI:1923019 protein coding gene phospholipid phosphatase related 5
3 gene 117.7815 117.8689 negative MGI_C57BL6J_1923811 Snx7 NCBI_Gene:76561,ENSEMBL:ENSMUSG00000028007 MGI:1923811 protein coding gene sorting nexin 7
3 gene 117.8486 117.8487 negative MGI_C57BL6J_5454588 Gm24811 ENSEMBL:ENSMUSG00000093054 MGI:5454588 miRNA gene predicted gene, 24811
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 118.4303 118.5396 positive MGI_C57BL6J_5477365 Gm26871 NCBI_Gene:102634933,ENSEMBL:ENSMUSG00000097311 MGI:5477365 lncRNA gene predicted gene, 26871
3 gene 118.4339 118.4339 positive MGI_C57BL6J_2676822 Mir137 miRBase:MI0000163,NCBI_Gene:387155,ENSEMBL:ENSMUSG00000065569 MGI:2676822 miRNA gene microRNA 137
3 gene 118.4347 118.4348 positive MGI_C57BL6J_5453932 Gm24155 ENSEMBL:ENSMUSG00000093000 MGI:5453932 miRNA gene predicted gene, 24155
3 gene 118.4348 118.4360 positive MGI_C57BL6J_3642633 Gm9916 ENSEMBL:ENSMUSG00000104178 MGI:3642633 lncRNA gene predicted gene 9916
3 gene 118.5262 118.5283 positive MGI_C57BL6J_5611001 Gm37773 ENSEMBL:ENSMUSG00000104033 MGI:5611001 unclassified gene predicted gene, 37773
3 gene 118.5309 118.5350 positive MGI_C57BL6J_5611156 Gm37928 ENSEMBL:ENSMUSG00000104362 MGI:5611156 unclassified gene predicted gene, 37928
3 gene 118.5370 118.5405 positive MGI_C57BL6J_5591603 Gm32444 ENSEMBL:ENSMUSG00000102729 MGI:5591603 unclassified non-coding RNA gene predicted gene, 32444
3 gene 118.5621 119.4329 positive MGI_C57BL6J_2139667 Dpyd NCBI_Gene:99586,ENSEMBL:ENSMUSG00000033308 MGI:2139667 protein coding gene dihydropyrimidine dehydrogenase
3 gene 118.8682 118.8705 positive MGI_C57BL6J_5663547 Gm43410 ENSEMBL:ENSMUSG00000106542 MGI:5663547 unclassified gene predicted gene 43410
3 gene 119.4372 119.4404 negative MGI_C57BL6J_5591736 Gm32577 NCBI_Gene:102635174 MGI:5591736 lncRNA gene predicted gene, 32577
3 gene 119.4568 119.4751 negative MGI_C57BL6J_5591791 Gm32632 NCBI_Gene:102635242 MGI:5591791 lncRNA gene predicted gene, 32632
3 gene 119.4838 119.4900 negative MGI_C57BL6J_5623016 Gm40131 NCBI_Gene:105244538 MGI:5623016 lncRNA gene predicted gene, 40131
3 gene 119.6387 119.6389 negative MGI_C57BL6J_5453209 Gm23432 ENSEMBL:ENSMUSG00000087806 MGI:5453209 snoRNA gene predicted gene, 23432
3 pseudogene 119.7095 119.7099 positive MGI_C57BL6J_3782515 Gm4332 NCBI_Gene:100043278,ENSEMBL:ENSMUSG00000106037 MGI:3782515 pseudogene predicted gene 4332
3 gene 119.7187 119.7845 negative MGI_C57BL6J_1860489 Ptbp2 NCBI_Gene:56195,ENSEMBL:ENSMUSG00000028134 MGI:1860489 protein coding gene polypyrimidine tract binding protein 2
3 gene 119.7277 119.7298 negative MGI_C57BL6J_5663437 Gm43300 ENSEMBL:ENSMUSG00000105572 MGI:5663437 unclassified gene predicted gene 43300
3 gene 119.7432 119.7464 negative MGI_C57BL6J_5662801 Gm42664 ENSEMBL:ENSMUSG00000106099 MGI:5662801 lncRNA gene predicted gene 42664
3 pseudogene 119.7573 119.7575 positive MGI_C57BL6J_5662941 Gm42804 ENSEMBL:ENSMUSG00000106075 MGI:5662941 pseudogene predicted gene 42804
3 gene 119.7838 119.7849 positive MGI_C57BL6J_5621433 Gm38548 NCBI_Gene:102641335 MGI:5621433 lncRNA gene predicted gene, 38548
3 gene 119.8319 119.8321 positive MGI_C57BL6J_5454521 Gm24744 ENSEMBL:ENSMUSG00000094593 MGI:5454521 miRNA gene predicted gene, 24744
3 gene 119.8379 119.8380 positive MGI_C57BL6J_5455914 Gm26137 ENSEMBL:ENSMUSG00000096196 MGI:5455914 miRNA gene predicted gene, 26137
3 pseudogene 119.9687 119.9695 positive MGI_C57BL6J_5010569 Gm18384 NCBI_Gene:100417046,ENSEMBL:ENSMUSG00000104726 MGI:5010569 pseudogene predicted gene, 18384
3 gene 120.3179 120.3180 negative MGI_C57BL6J_5453510 Gm23733 ENSEMBL:ENSMUSG00000065684 MGI:5453510 snRNA gene predicted gene, 23733
3 gene 120.4543 120.8867 negative MGI_C57BL6J_2444638 6530403H02Rik NCBI_Gene:320739,ENSEMBL:ENSMUSG00000098097 MGI:2444638 lncRNA gene RIKEN cDNA 6530403H02 gene
3 gene 120.6100 120.6101 negative MGI_C57BL6J_5454790 Gm25013 ENSEMBL:ENSMUSG00000089027 MGI:5454790 snoRNA gene predicted gene, 25013
3 pseudogene 120.7357 120.7396 negative MGI_C57BL6J_5663064 Gm42927 ENSEMBL:ENSMUSG00000105207 MGI:5663064 pseudogene predicted gene 42927
3 gene 120.9321 120.9347 negative MGI_C57BL6J_5623018 Gm40133 NCBI_Gene:105244540 MGI:5623018 lncRNA gene predicted gene, 40133
3 gene 121.0205 121.0208 negative MGI_C57BL6J_5663581 Gm43444 ENSEMBL:ENSMUSG00000105243 MGI:5663581 unclassified gene predicted gene 43444
3 gene 121.0291 121.0298 negative MGI_C57BL6J_5663063 Gm42926 ENSEMBL:ENSMUSG00000104749 MGI:5663063 unclassified gene predicted gene 42926
3 gene 121.1554 121.1718 negative MGI_C57BL6J_1920420 Rwdd3 NCBI_Gene:66568,ENSEMBL:ENSMUSG00000028133 MGI:1920420 protein coding gene RWD domain containing 3
3 gene 121.1687 121.1713 positive MGI_C57BL6J_3642648 Gm10652 ENSEMBL:ENSMUSG00000106329 MGI:3642648 unclassified gene predicted gene 10652
3 pseudogene 121.1799 121.1811 negative MGI_C57BL6J_3643595 Gm5710 NCBI_Gene:435752,ENSEMBL:ENSMUSG00000098042 MGI:3643595 pseudogene predicted gene 5710
3 gene 121.2018 121.2831 negative MGI_C57BL6J_1923195 Tmem56 NCBI_Gene:99887,ENSEMBL:ENSMUSG00000028132 MGI:1923195 protein coding gene transmembrane protein 56
3 pseudogene 121.2500 121.2508 negative MGI_C57BL6J_3644601 Gm9353 NCBI_Gene:668778,ENSEMBL:ENSMUSG00000106619 MGI:3644601 pseudogene predicted gene 9353
3 pseudogene 121.2775 121.2783 positive MGI_C57BL6J_5589676 Gm30517 ENSEMBL:ENSMUSG00000104902 MGI:5589676 pseudogene predicted gene, 30517
3 gene 121.2917 121.3631 positive MGI_C57BL6J_1914039 Alg14 NCBI_Gene:66789,ENSEMBL:ENSMUSG00000039887 MGI:1914039 protein coding gene asparagine-linked glycosylation 14
3 gene 121.3377 121.3380 positive MGI_C57BL6J_5455804 Gm26027 ENSEMBL:ENSMUSG00000084674 MGI:5455804 unclassified non-coding RNA gene predicted gene, 26027
3 gene 121.3536 121.3613 positive MGI_C57BL6J_5592469 Gm33310 NCBI_Gene:102636167 MGI:5592469 lncRNA gene predicted gene, 33310
3 gene 121.3690 121.3887 positive MGI_C57BL6J_5592522 Gm33363 NCBI_Gene:102636241 MGI:5592522 lncRNA gene predicted gene, 33363
3 pseudogene 121.3801 121.3808 negative MGI_C57BL6J_3643596 Gm5711 NCBI_Gene:435753,ENSEMBL:ENSMUSG00000106455 MGI:3643596 pseudogene predicted gene 5711
3 gene 121.3893 121.3927 positive MGI_C57BL6J_5623019 Gm40134 NCBI_Gene:105244541 MGI:5623019 lncRNA gene predicted gene, 40134
3 gene 121.4242 121.4276 negative MGI_C57BL6J_5663065 Gm42928 ENSEMBL:ENSMUSG00000105813 MGI:5663065 unclassified gene predicted gene 42928
3 gene 121.4265 121.4582 positive MGI_C57BL6J_1919244 Cnn3 NCBI_Gene:71994,ENSEMBL:ENSMUSG00000053931 MGI:1919244 protein coding gene calponin 3, acidic
3 gene 121.4280 121.4293 positive MGI_C57BL6J_5663066 Gm42929 ENSEMBL:ENSMUSG00000106022 MGI:5663066 unclassified gene predicted gene 42929
3 gene 121.4595 121.5324 negative MGI_C57BL6J_2384860 Slc44a3 NCBI_Gene:213603,ENSEMBL:ENSMUSG00000039865 MGI:2384860 protein coding gene solute carrier family 44, member 3
3 gene 121.5310 121.5325 positive MGI_C57BL6J_5621569 Gm38684 NCBI_Gene:105242407 MGI:5621569 lncRNA gene predicted gene, 38684
3 gene 121.5316 121.5362 positive MGI_C57BL6J_2442825 A530020G20Rik NCBI_Gene:319839,ENSEMBL:ENSMUSG00000097124 MGI:2442825 lncRNA gene RIKEN cDNA A530020G20 gene
3 gene 121.5452 121.5627 positive MGI_C57BL6J_5623020 Gm40135 NCBI_Gene:105244542 MGI:5623020 lncRNA gene predicted gene, 40135
3 gene 121.5642 121.5762 negative MGI_C57BL6J_5592706 Gm33547 NCBI_Gene:102636496 MGI:5592706 lncRNA gene predicted gene, 33547
3 gene 121.5805 121.6066 negative MGI_C57BL6J_5592644 Gm33485 NCBI_Gene:102636411 MGI:5592644 lncRNA gene predicted gene, 33485
3 gene 121.5929 121.5951 positive MGI_C57BL6J_5592867 Gm33708 NCBI_Gene:102636712 MGI:5592867 lncRNA gene predicted gene, 33708
3 gene 121.6349 121.6465 negative MGI_C57BL6J_2442643 A730020M07Rik NCBI_Gene:100503044,ENSEMBL:ENSMUSG00000044522 MGI:2442643 lncRNA gene RIKEN cDNA A730020M07 gene
3 gene 121.6708 121.6830 positive MGI_C57BL6J_3588188 4930432M17Rik NCBI_Gene:619318,ENSEMBL:ENSMUSG00000074248 MGI:3588188 protein coding gene RIKEN cDNA 4930432M17 gene
3 gene 121.7015 121.7102 negative MGI_C57BL6J_5663745 Gm43608 ENSEMBL:ENSMUSG00000106036 MGI:5663745 lncRNA gene predicted gene 43608
3 gene 121.7116 121.7124 negative MGI_C57BL6J_5663744 Gm43607 ENSEMBL:ENSMUSG00000105767 MGI:5663744 lncRNA gene predicted gene 43607
3 gene 121.7166 121.7234 negative MGI_C57BL6J_5623021 Gm40136 NCBI_Gene:105244543 MGI:5623021 lncRNA gene predicted gene, 40136
3 gene 121.7216 121.7234 negative MGI_C57BL6J_5663960 Gm43823 ENSEMBL:ENSMUSG00000106224 MGI:5663960 unclassified gene predicted gene 43823
3 gene 121.7235 121.7351 positive MGI_C57BL6J_88381 F3 NCBI_Gene:14066,ENSEMBL:ENSMUSG00000028128 MGI:88381 protein coding gene coagulation factor III
3 gene 121.7550 121.7586 negative MGI_C57BL6J_5662914 Gm42777 ENSEMBL:ENSMUSG00000104676 MGI:5662914 unclassified gene predicted gene 42777
3 gene 121.7588 121.8153 negative MGI_C57BL6J_1349216 Abcd3 NCBI_Gene:19299,ENSEMBL:ENSMUSG00000028127 MGI:1349216 protein coding gene ATP-binding cassette, sub-family D (ALD), member 3
3 gene 121.7622 121.7649 negative MGI_C57BL6J_5663746 Gm43609 ENSEMBL:ENSMUSG00000106087 MGI:5663746 unclassified gene predicted gene 43609
3 gene 121.7875 121.7886 negative MGI_C57BL6J_1918078 4633401B06Rik ENSEMBL:ENSMUSG00000105597 MGI:1918078 unclassified gene RIKEN cDNA 4633401B06 gene
3 pseudogene 121.8234 121.8238 negative MGI_C57BL6J_5662913 Gm42776 ENSEMBL:ENSMUSG00000105889 MGI:5662913 pseudogene predicted gene 42776
3 gene 121.8461 121.8472 negative MGI_C57BL6J_5593083 Gm33924 NCBI_Gene:102637009 MGI:5593083 lncRNA gene predicted gene, 33924
3 gene 121.8511 121.8552 positive MGI_C57BL6J_5593146 Gm33987 NCBI_Gene:102637085 MGI:5593146 lncRNA gene predicted gene, 33987
3 pseudogene 121.8628 121.8632 positive MGI_C57BL6J_5662730 Gm42593 ENSEMBL:ENSMUSG00000104595 MGI:5662730 pseudogene predicted gene 42593
3 gene 121.8961 121.9034 negative MGI_C57BL6J_5593209 Gm34050 NCBI_Gene:102637167 MGI:5593209 lncRNA gene predicted gene, 34050
3 gene 121.9036 121.9358 positive MGI_C57BL6J_5593278 Gm34119 NCBI_Gene:102637254 MGI:5593278 lncRNA gene predicted gene, 34119
3 gene 121.9269 121.9366 negative MGI_C57BL6J_5826458 Gm46821 NCBI_Gene:108168893 MGI:5826458 lncRNA gene predicted gene, 46821
3 gene 121.9525 122.0168 positive MGI_C57BL6J_2443818 Arhgap29 NCBI_Gene:214137,ENSEMBL:ENSMUSG00000039831 MGI:2443818 protein coding gene Rho GTPase activating protein 29
3 gene 122.0238 122.0271 positive MGI_C57BL6J_5662681 Gm42544 ENSEMBL:ENSMUSG00000104869 MGI:5662681 unclassified gene predicted gene 42544
3 gene 122.0439 122.1801 positive MGI_C57BL6J_109424 Abca4 NCBI_Gene:11304,ENSEMBL:ENSMUSG00000028125 MGI:109424 protein coding gene ATP-binding cassette, sub-family A (ABC1), member 4
3 gene 122.1055 122.1318 negative MGI_C57BL6J_5623023 Gm40138 NCBI_Gene:105244545 MGI:5623023 lncRNA gene predicted gene, 40138
3 pseudogene 122.1251 122.2274 negative MGI_C57BL6J_5663295 Gm43158 ENSEMBL:ENSMUSG00000104887 MGI:5663295 pseudogene predicted gene 43158
3 pseudogene 122.1522 122.1526 negative MGI_C57BL6J_5663294 Gm43157 ENSEMBL:ENSMUSG00000105351 MGI:5663294 pseudogene predicted gene 43157
3 pseudogene 122.1835 122.1850 negative MGI_C57BL6J_3643912 Gm9361 NCBI_Gene:668788,ENSEMBL:ENSMUSG00000104799 MGI:3643912 pseudogene predicted gene 9361
3 gene 122.1974 122.2454 negative MGI_C57BL6J_5826459 Gm46822 NCBI_Gene:108168894 MGI:5826459 lncRNA gene predicted gene, 46822
3 gene 122.2114 122.2153 positive MGI_C57BL6J_5623022 Gm40137 NCBI_Gene:105244544 MGI:5623022 lncRNA gene predicted gene, 40137
3 pseudogene 122.2300 122.2312 negative MGI_C57BL6J_3782792 Gm4609 NCBI_Gene:100043724,ENSEMBL:ENSMUSG00000078592 MGI:3782792 pseudogene predicted gene 4609
3 gene 122.2325 122.2326 negative MGI_C57BL6J_5452680 Gm22903 ENSEMBL:ENSMUSG00000092934 MGI:5452680 miRNA gene predicted gene, 22903
3 gene 122.2456 122.2707 positive MGI_C57BL6J_104995 Gclm NCBI_Gene:14630,ENSEMBL:ENSMUSG00000028124 MGI:104995 protein coding gene glutamate-cysteine ligase, modifier subunit
3 gene 122.2560 122.2937 negative MGI_C57BL6J_4937128 Gm17494 ENSEMBL:ENSMUSG00000057359 MGI:4937128 lncRNA gene predicted gene, 17494
3 pseudogene 122.2567 122.2574 positive MGI_C57BL6J_3648621 Gm6061 NCBI_Gene:606529,ENSEMBL:ENSMUSG00000093392 MGI:3648621 pseudogene predicted gene 6061
3 gene 122.2744 122.2853 positive MGI_C57BL6J_1923173 Dnttip2 NCBI_Gene:99480,ENSEMBL:ENSMUSG00000039756 MGI:1923173 protein coding gene deoxynucleotidyltransferase, terminal, interacting protein 2
3 gene 122.2929 122.2930 negative MGI_C57BL6J_4413735 n-TRtct2 NCBI_Gene:102467253 MGI:4413735 tRNA gene nuclear encoded tRNA arginine 2 (anticodon TCT)
3 gene 122.2934 122.3052 positive MGI_C57BL6J_5623075 Gm40190 NCBI_Gene:105244600,ENSEMBL:ENSMUSG00000105057 MGI:5623075 lncRNA gene predicted gene, 40190
3 gene 122.2936 122.2937 negative MGI_C57BL6J_3691613 Mir760 miRBase:MI0004605,NCBI_Gene:791077,ENSEMBL:ENSMUSG00000076456 MGI:3691613 miRNA gene microRNA 760
3 gene 122.2941 122.5302 positive MGI_C57BL6J_1352501 Bcar3 NCBI_Gene:29815,ENSEMBL:ENSMUSG00000028121 MGI:1352501 protein coding gene breast cancer anti-estrogen resistance 3
3 gene 122.3217 122.3317 positive MGI_C57BL6J_5623024 Gm40139 NCBI_Gene:105244546 MGI:5623024 lncRNA gene predicted gene, 40139
3 gene 122.3771 122.3923 negative MGI_C57BL6J_3782793 Gm4610 NCBI_Gene:100043726,ENSEMBL:ENSMUSG00000104554 MGI:3782793 lncRNA gene predicted gene 4610
3 gene 122.4264 122.4591 negative MGI_C57BL6J_5662973 Gm42836 ENSEMBL:ENSMUSG00000104574 MGI:5662973 lncRNA gene predicted gene 42836
3 gene 122.4647 122.4649 positive MGI_C57BL6J_5454930 Gm25153 ENSEMBL:ENSMUSG00000087743 MGI:5454930 snRNA gene predicted gene, 25153
3 gene 122.4765 122.4831 negative MGI_C57BL6J_5593508 Gm34349 NCBI_Gene:102637574 MGI:5593508 lncRNA gene predicted gene, 34349
3 gene 122.5387 122.6197 negative MGI_C57BL6J_1925642 Fnbp1l NCBI_Gene:214459,ENSEMBL:ENSMUSG00000039735 MGI:1925642 protein coding gene formin binding protein 1-like
3 gene 122.5416 122.5417 negative MGI_C57BL6J_5562759 Mir7657 miRBase:MI0024997,NCBI_Gene:102465764,ENSEMBL:ENSMUSG00000104773 MGI:5562759 miRNA gene microRNA 7657
3 gene 122.5650 122.5747 positive MGI_C57BL6J_5663706 Gm43569 ENSEMBL:ENSMUSG00000106194 MGI:5663706 lncRNA gene predicted gene 43569
3 gene 122.5745 122.5771 negative MGI_C57BL6J_5663131 Gm42994 ENSEMBL:ENSMUSG00000106364 MGI:5663131 unclassified gene predicted gene 42994
3 gene 122.6222 122.6302 negative MGI_C57BL6J_5663705 Gm43568 NCBI_Gene:108168895,ENSEMBL:ENSMUSG00000106365 MGI:5663705 lncRNA gene predicted gene 43568
3 pseudogene 122.6326 122.6333 negative MGI_C57BL6J_3649175 Gm5981 NCBI_Gene:546810,ENSEMBL:ENSMUSG00000106562 MGI:3649175 pseudogene predicted gene 5981
3 gene 122.6622 122.6841 negative MGI_C57BL6J_5623025 Gm40140 NCBI_Gene:105244547 MGI:5623025 lncRNA gene predicted gene, 40140
3 gene 122.7289 122.8594 positive MGI_C57BL6J_2651499 Pde5a NCBI_Gene:242202,ENSEMBL:ENSMUSG00000053965 MGI:2651499 protein coding gene phosphodiesterase 5A, cGMP-specific
3 gene 122.7620 122.8020 negative MGI_C57BL6J_1918897 4930447N08Rik NCBI_Gene:71647,ENSEMBL:ENSMUSG00000106583 MGI:1918897 lncRNA gene RIKEN cDNA 4930447N08 gene
3 pseudogene 122.7880 122.7887 negative MGI_C57BL6J_5593298 Gm34139 NCBI_Gene:102637287,ENSEMBL:ENSMUSG00000106376 MGI:5593298 pseudogene predicted gene, 34139
3 gene 122.8125 122.8505 negative MGI_C57BL6J_5593736 Gm34577 NCBI_Gene:102637877 MGI:5593736 lncRNA gene predicted gene, 34577
3 pseudogene 122.8619 122.8627 positive MGI_C57BL6J_3646838 Gm9364 NCBI_Gene:102637985,ENSEMBL:ENSMUSG00000106059 MGI:3646838 pseudogene predicted gene 9364
3 gene 122.8647 122.9241 negative MGI_C57BL6J_1921307 4933405D12Rik NCBI_Gene:74057,ENSEMBL:ENSMUSG00000097852 MGI:1921307 lncRNA gene RIKEN cDNA 4933405D12 gene
3 gene 122.8951 122.8995 positive MGI_C57BL6J_95478 Fabp2 NCBI_Gene:14079,ENSEMBL:ENSMUSG00000023057 MGI:95478 protein coding gene fatty acid binding protein 2, intestinal
3 gene 122.9131 122.9194 negative MGI_C57BL6J_3779169 Gm10959 ENSEMBL:ENSMUSG00000078590 MGI:3779169 protein coding gene predicted gene 10959
3 gene 122.9242 122.9262 positive MGI_C57BL6J_1914954 1810037I17Rik NCBI_Gene:67704,ENSEMBL:ENSMUSG00000054091 MGI:1914954 protein coding gene RIKEN cDNA 1810037I17 gene
3 gene 122.9315 122.9845 negative MGI_C57BL6J_2139607 Usp53 NCBI_Gene:99526,ENSEMBL:ENSMUSG00000039701 MGI:2139607 protein coding gene ubiquitin specific peptidase 53
3 gene 122.9954 122.9990 positive MGI_C57BL6J_5663422 Gm43285 ENSEMBL:ENSMUSG00000105478 MGI:5663422 unclassified gene predicted gene 43285
3 gene 123.0062 123.0350 negative MGI_C57BL6J_1913063 Myoz2 NCBI_Gene:59006,ENSEMBL:ENSMUSG00000028116 MGI:1913063 protein coding gene myozenin 2
3 gene 123.0153 123.0154 negative MGI_C57BL6J_5451843 Gm22066 ENSEMBL:ENSMUSG00000076949 MGI:5451843 miRNA gene predicted gene, 22066
3 pseudogene 123.0433 123.0437 negative MGI_C57BL6J_5663423 Gm43286 ENSEMBL:ENSMUSG00000106114 MGI:5663423 pseudogene predicted gene 43286
3 gene 123.0765 123.2362 negative MGI_C57BL6J_2153070 Synpo2 NCBI_Gene:118449,ENSEMBL:ENSMUSG00000050315 MGI:2153070 protein coding gene synaptopodin 2
3 pseudogene 123.1423 123.1430 positive MGI_C57BL6J_5663881 Gm43744 ENSEMBL:ENSMUSG00000106012 MGI:5663881 pseudogene predicted gene 43744
3 gene 123.1639 123.1645 negative MGI_C57BL6J_5663424 Gm43287 ENSEMBL:ENSMUSG00000105562 MGI:5663424 unclassified gene predicted gene 43287
3 gene 123.1901 123.1928 negative MGI_C57BL6J_5663425 Gm43288 ENSEMBL:ENSMUSG00000106220 MGI:5663425 unclassified gene predicted gene 43288
3 gene 123.2094 123.2119 negative MGI_C57BL6J_5663420 Gm43283 ENSEMBL:ENSMUSG00000106490 MGI:5663420 unclassified gene predicted gene 43283
3 gene 123.2675 123.3656 positive MGI_C57BL6J_1916858 Sec24d NCBI_Gene:69608,ENSEMBL:ENSMUSG00000039234 MGI:1916858 protein coding gene Sec24 related gene family, member D (S. cerevisiae)
3 gene 123.3212 123.3262 negative MGI_C57BL6J_5623027 Gm40142 NCBI_Gene:105244549 MGI:5623027 lncRNA gene predicted gene, 40142
3 gene 123.3683 123.3861 negative MGI_C57BL6J_2442926 Mettl14 NCBI_Gene:210529,ENSEMBL:ENSMUSG00000028114 MGI:2442926 protein coding gene methyltransferase like 14
3 gene 123.3911 123.3912 negative MGI_C57BL6J_5452490 Gm22713 ENSEMBL:ENSMUSG00000080545 MGI:5452490 snRNA gene predicted gene, 22713
3 gene 123.4342 123.4379 positive MGI_C57BL6J_5623028 Gm40143 NCBI_Gene:105244550 MGI:5623028 lncRNA gene predicted gene, 40143
3 gene 123.4412 123.4489 negative MGI_C57BL6J_5594224 Gm35065 NCBI_Gene:102638522,ENSEMBL:ENSMUSG00000105784 MGI:5594224 lncRNA gene predicted gene, 35065
3 gene 123.4469 123.5066 positive MGI_C57BL6J_1100881 Prss12 NCBI_Gene:19142,ENSEMBL:ENSMUSG00000027978 MGI:1100881 protein coding gene protease, serine 12 neurotrypsin (motopsin)
3 gene 123.4720 123.4724 positive MGI_C57BL6J_5663727 Gm43590 ENSEMBL:ENSMUSG00000105058 MGI:5663727 unclassified gene predicted gene 43590
3 gene 123.5076 123.5084 negative MGI_C57BL6J_1917145 Snhg8 NCBI_Gene:69895,ENSEMBL:ENSMUSG00000104960 MGI:1917145 lncRNA gene small nucleolar RNA host gene 8
3 gene 123.5079 123.5081 negative MGI_C57BL6J_4360223 Snora24 NCBI_Gene:100306957,ENSEMBL:ENSMUSG00000092730 MGI:4360223 snoRNA gene small nucleolar RNA, H/ACA box 24
3 pseudogene 123.5096 123.5107 negative MGI_C57BL6J_3645990 Gm9369 NCBI_Gene:668804,ENSEMBL:ENSMUSG00000104670 MGI:3645990 pseudogene predicted pseudogene 9369
3 gene 123.5262 123.6909 negative MGI_C57BL6J_1932544 Ndst3 NCBI_Gene:83398,ENSEMBL:ENSMUSG00000027977 MGI:1932544 protein coding gene N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
3 gene 123.6857 123.6880 negative MGI_C57BL6J_5662647 Gm42510 ENSEMBL:ENSMUSG00000104860 MGI:5662647 unclassified gene predicted gene 42510
3 gene 123.7433 123.7434 negative MGI_C57BL6J_5454233 Gm24456 ENSEMBL:ENSMUSG00000065132 MGI:5454233 snRNA gene predicted gene, 24456
3 pseudogene 123.7613 123.7619 positive MGI_C57BL6J_3705651 Gm15400 NCBI_Gene:108168856,ENSEMBL:ENSMUSG00000080842 MGI:3705651 pseudogene predicted gene 15400
3 pseudogene 123.9841 123.9851 negative MGI_C57BL6J_3705526 Gm15399 ENSEMBL:ENSMUSG00000081939 MGI:3705526 pseudogene predicted gene 15399
3 gene 124.0075 124.0290 positive MGI_C57BL6J_5623029 Gm40144 NCBI_Gene:105244551 MGI:5623029 lncRNA gene predicted gene, 40144
3 gene 124.2462 124.3190 positive MGI_C57BL6J_5663868 Gm43731 ENSEMBL:ENSMUSG00000104531 MGI:5663868 lncRNA gene predicted gene 43731
3 pseudogene 124.2920 124.2925 positive MGI_C57BL6J_3645996 Gm9372 NCBI_Gene:668809,ENSEMBL:ENSMUSG00000090474 MGI:3645996 pseudogene predicted gene 9372
3 pseudogene 124.3042 124.3044 negative MGI_C57BL6J_5662961 Gm42824 ENSEMBL:ENSMUSG00000106238 MGI:5662961 pseudogene predicted gene 42824
3 gene 124.3209 124.3247 positive MGI_C57BL6J_2443503 Tram1l1 NCBI_Gene:229801,ENSEMBL:ENSMUSG00000044528 MGI:2443503 protein coding gene translocation associated membrane protein 1-like 1
3 pseudogene 124.3855 124.3867 positive MGI_C57BL6J_3704225 Gm4617 NCBI_Gene:100043740,ENSEMBL:ENSMUSG00000096544 MGI:3704225 pseudogene predicted pseudogene 4617
3 gene 124.3981 124.3998 negative MGI_C57BL6J_1918179 4921527H02Rik ENSEMBL:ENSMUSG00000106150 MGI:1918179 unclassified gene RIKEN cDNA 4921527H02 gene
3 gene 124.4010 124.4260 negative MGI_C57BL6J_1919074 1700006A11Rik NCBI_Gene:71824,ENSEMBL:ENSMUSG00000027973 MGI:1919074 protein coding gene RIKEN cDNA 1700006A11 gene
3 gene 124.4107 124.4108 positive MGI_C57BL6J_5452352 Gm22575 ENSEMBL:ENSMUSG00000064915 MGI:5452352 snRNA gene predicted gene, 22575
3 gene 124.4204 124.4221 positive MGI_C57BL6J_5662960 Gm42823 ENSEMBL:ENSMUSG00000106413 MGI:5662960 lncRNA gene predicted gene 42823
3 gene 124.5016 124.5017 positive MGI_C57BL6J_5452677 Gm22900 ENSEMBL:ENSMUSG00000077726 MGI:5452677 snoRNA gene predicted gene, 22900
3 gene 124.5564 124.5811 negative MGI_C57BL6J_1923637 1700003H04Rik NCBI_Gene:384775,ENSEMBL:ENSMUSG00000039174 MGI:1923637 protein coding gene RIKEN cDNA 1700003H04 gene
3 pseudogene 124.5885 124.5892 negative MGI_C57BL6J_3643020 Gm9379 NCBI_Gene:668817,ENSEMBL:ENSMUSG00000106009 MGI:3643020 pseudogene predicted gene 9379
3 gene 124.8395 124.9369 positive MGI_C57BL6J_5662962 Gm42825 ENSEMBL:ENSMUSG00000106423 MGI:5662962 lncRNA gene predicted gene 42825
3 gene 124.8486 124.8489 positive MGI_C57BL6J_5453450 Gm23673 ENSEMBL:ENSMUSG00000088099 MGI:5453450 unclassified non-coding RNA gene predicted gene, 23673
3 pseudogene 125.0421 125.0433 negative MGI_C57BL6J_3644106 Gm9381 NCBI_Gene:668820,ENSEMBL:ENSMUSG00000098033 MGI:3644106 pseudogene predicted gene 9381
3 gene 125.2169 125.2196 negative MGI_C57BL6J_5662963 Gm42826 ENSEMBL:ENSMUSG00000106001 MGI:5662963 unclassified gene predicted gene 42826
3 gene 125.4041 125.7289 positive MGI_C57BL6J_1932545 Ndst4 NCBI_Gene:64580,ENSEMBL:ENSMUSG00000027971 MGI:1932545 protein coding gene N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
3 gene 125.5201 125.5351 negative MGI_C57BL6J_5594396 Gm35237 NCBI_Gene:102638747 MGI:5594396 lncRNA gene predicted gene, 35237
3 gene 125.6576 125.6813 negative MGI_C57BL6J_5594345 Gm35186 NCBI_Gene:102638681 MGI:5594345 lncRNA gene predicted gene, 35186
3 gene 125.8653 125.9387 negative MGI_C57BL6J_109522 Ugt8a NCBI_Gene:22239,ENSEMBL:ENSMUSG00000032854 MGI:109522 protein coding gene UDP galactosyltransferase 8A
3 gene 125.8965 125.9006 positive MGI_C57BL6J_5623030 Gm40145 NCBI_Gene:105244552 MGI:5623030 lncRNA gene predicted gene, 40145
3 gene 126.1067 126.1837 positive MGI_C57BL6J_5623031 Gm40146 NCBI_Gene:105244553 MGI:5623031 lncRNA gene predicted gene, 40146
3 gene 126.1525 126.1527 negative MGI_C57BL6J_5456052 Gm26275 ENSEMBL:ENSMUSG00000087726 MGI:5456052 unclassified non-coding RNA gene predicted gene, 26275
3 gene 126.2263 126.2284 positive MGI_C57BL6J_5662964 Gm42827 ENSEMBL:ENSMUSG00000106503 MGI:5662964 lncRNA gene predicted gene 42827
3 pseudogene 126.2780 126.2793 positive MGI_C57BL6J_5011101 Gm18916 NCBI_Gene:100417950,ENSEMBL:ENSMUSG00000106094 MGI:5011101 pseudogene predicted gene, 18916
3 gene 126.3637 126.4404 positive MGI_C57BL6J_2443513 Arsj NCBI_Gene:271970,ENSEMBL:ENSMUSG00000046561 MGI:2443513 protein coding gene arylsulfatase J
3 gene 126.3656 126.3808 negative MGI_C57BL6J_5594567 Gm35408 NCBI_Gene:102638976 MGI:5594567 lncRNA gene predicted gene, 35408
3 gene 126.3863 126.4072 negative MGI_C57BL6J_5594510 Gm35351 NCBI_Gene:102638900 MGI:5594510 lncRNA gene predicted gene, 35351
3 gene 126.4329 126.4393 negative MGI_C57BL6J_4938052 Gm17225 ENSEMBL:ENSMUSG00000090427 MGI:4938052 lncRNA gene predicted gene 17225
3 gene 126.4410 126.4451 positive MGI_C57BL6J_5663464 Gm43327 ENSEMBL:ENSMUSG00000105695 MGI:5663464 unclassified gene predicted gene 43327
3 pseudogene 126.4475 126.4480 positive MGI_C57BL6J_5295675 Gm20568 NCBI_Gene:108168897,ENSEMBL:ENSMUSG00000105233 MGI:5295675 pseudogene predicted gene, 20568
3 gene 126.4683 126.5199 positive MGI_C57BL6J_5826460 Gm46823 NCBI_Gene:108168898 MGI:5826460 lncRNA gene predicted gene, 46823
3 gene 126.5963 126.8463 positive MGI_C57BL6J_1341265 Camk2d NCBI_Gene:108058,ENSEMBL:ENSMUSG00000053819 MGI:1341265 protein coding gene calcium/calmodulin-dependent protein kinase II, delta
3 gene 126.6000 126.6045 positive MGI_C57BL6J_5663148 Gm43011 ENSEMBL:ENSMUSG00000106475 MGI:5663148 unclassified gene predicted gene 43011
3 gene 126.6259 126.6288 positive MGI_C57BL6J_5663147 Gm43010 ENSEMBL:ENSMUSG00000104571 MGI:5663147 unclassified gene predicted gene 43010
3 gene 126.6445 126.6480 positive MGI_C57BL6J_5663146 Gm43009 ENSEMBL:ENSMUSG00000105586 MGI:5663146 unclassified gene predicted gene 43009
3 gene 126.6577 126.6593 positive MGI_C57BL6J_5663143 Gm43006 ENSEMBL:ENSMUSG00000105774 MGI:5663143 unclassified gene predicted gene 43006
3 gene 126.6624 126.6630 positive MGI_C57BL6J_5663142 Gm43005 ENSEMBL:ENSMUSG00000104906 MGI:5663142 unclassified gene predicted gene 43005
3 gene 126.6673 126.6699 negative MGI_C57BL6J_3783000 Gm15551 NCBI_Gene:102639086,ENSEMBL:ENSMUSG00000086679 MGI:3783000 lncRNA gene predicted gene 15551
3 gene 126.7375 126.7411 positive MGI_C57BL6J_5662652 Gm42515 ENSEMBL:ENSMUSG00000105378 MGI:5662652 unclassified gene predicted gene 42515
3 gene 126.7461 126.7480 positive MGI_C57BL6J_5662651 Gm42514 ENSEMBL:ENSMUSG00000105553 MGI:5662651 unclassified gene predicted gene 42514
3 gene 126.8045 126.8069 positive MGI_C57BL6J_5633903 C2dat1 NA NA unclassified non-coding RNA gene CAMK2D associated transcript 1
3 gene 126.9216 127.5003 negative MGI_C57BL6J_88025 Ank2 NCBI_Gene:109676,ENSEMBL:ENSMUSG00000032826 MGI:88025 protein coding gene ankyrin 2, brain
3 gene 126.9665 126.9675 negative MGI_C57BL6J_1925217 A930036I15Rik ENSEMBL:ENSMUSG00000105469 MGI:1925217 unclassified gene RIKEN cDNA A930036I15 gene
3 gene 126.9743 126.9759 negative MGI_C57BL6J_5663459 Gm43322 ENSEMBL:ENSMUSG00000105939 MGI:5663459 unclassified gene predicted gene 43322
3 gene 126.9868 126.9877 negative MGI_C57BL6J_5663902 Gm43765 ENSEMBL:ENSMUSG00000105119 MGI:5663902 unclassified gene predicted gene 43765
3 gene 127.0054 127.0055 positive MGI_C57BL6J_5455278 Gm25501 ENSEMBL:ENSMUSG00000077617 MGI:5455278 snoRNA gene predicted gene, 25501
3 gene 127.0083 127.0108 negative MGI_C57BL6J_5663887 Gm43750 ENSEMBL:ENSMUSG00000106612 MGI:5663887 unclassified gene predicted gene 43750
3 gene 127.0490 127.0520 negative MGI_C57BL6J_5663888 Gm43751 ENSEMBL:ENSMUSG00000105322 MGI:5663888 unclassified gene predicted gene 43751
3 gene 127.1378 127.1405 negative MGI_C57BL6J_5663111 Gm42974 ENSEMBL:ENSMUSG00000104963 MGI:5663111 unclassified gene predicted gene 42974
3 gene 127.1613 127.1683 positive MGI_C57BL6J_4439882 Gm16958 NCBI_Gene:100862268,ENSEMBL:ENSMUSG00000097456 MGI:4439882 lncRNA gene predicted gene, 16958
3 gene 127.1803 127.1840 negative MGI_C57BL6J_2445192 C230031I18Rik ENSEMBL:ENSMUSG00000105202 MGI:2445192 unclassified gene RIKEN cDNA C230031I18 gene
3 gene 127.2406 127.2438 negative MGI_C57BL6J_5663110 Gm42973 ENSEMBL:ENSMUSG00000105733 MGI:5663110 unclassified gene predicted gene 42973
3 gene 127.2667 127.2723 negative MGI_C57BL6J_5663109 Gm42972 ENSEMBL:ENSMUSG00000105445 MGI:5663109 unclassified gene predicted gene 42972
3 gene 127.2835 127.2856 negative MGI_C57BL6J_5663108 Gm42971 ENSEMBL:ENSMUSG00000105568 MGI:5663108 unclassified gene predicted gene 42971
3 gene 127.2983 127.2997 negative MGI_C57BL6J_5663107 Gm42970 ENSEMBL:ENSMUSG00000106446 MGI:5663107 unclassified gene predicted gene 42970
3 gene 127.3901 127.3937 negative MGI_C57BL6J_5663106 Gm42969 ENSEMBL:ENSMUSG00000105822 MGI:5663106 unclassified gene predicted gene 42969
3 gene 127.3939 127.4040 negative MGI_C57BL6J_5826461 Gm46824 NCBI_Gene:108168899 MGI:5826461 lncRNA gene predicted gene, 46824
3 gene 127.4662 127.4708 negative MGI_C57BL6J_5594694 Gm35535 NCBI_Gene:102639156 MGI:5594694 lncRNA gene predicted gene, 35535
3 pseudogene 127.4794 127.4814 negative MGI_C57BL6J_5663492 Gm43355 ENSEMBL:ENSMUSG00000106369 MGI:5663492 pseudogene predicted gene 43355
3 pseudogene 127.4802 127.4812 negative MGI_C57BL6J_5662662 Gm42525 ENSEMBL:ENSMUSG00000105969 MGI:5662662 pseudogene predicted gene 42525
3 gene 127.4811 127.4812 positive MGI_C57BL6J_5690886 Gm44494 ENSEMBL:ENSMUSG00000105116 MGI:5690886 miRNA gene predicted gene, 44494
3 pseudogene 127.5129 127.5132 positive MGI_C57BL6J_5663491 Gm43354 ENSEMBL:ENSMUSG00000104957 MGI:5663491 pseudogene predicted gene 43354
3 gene 127.5367 127.5533 negative MGI_C57BL6J_107634 Larp7 NCBI_Gene:28036,ENSEMBL:ENSMUSG00000027968 MGI:107634 protein coding gene La ribonucleoprotein domain family, member 7
3 gene 127.5452 127.5453 positive MGI_C57BL6J_3619326 Mir302b miRBase:MI0003716,NCBI_Gene:723948,ENSEMBL:ENSMUSG00000076252 MGI:3619326 miRNA gene microRNA 302b
3 gene 127.5454 127.5454 positive MGI_C57BL6J_3619327 Mir302c miRBase:MI0003717,NCBI_Gene:723835,ENSEMBL:ENSMUSG00000065482 MGI:3619327 miRNA gene microRNA 302c
3 gene 127.5455 127.5456 positive MGI_C57BL6J_3619325 Mir302a miRBase:MI0000402,NCBI_Gene:723920,ENSEMBL:ENSMUSG00000065552 MGI:3619325 miRNA gene microRNA 302a
3 gene 127.5456 127.5457 positive MGI_C57BL6J_3619328 Mir302d miRBase:MI0003718,NCBI_Gene:723928,ENSEMBL:ENSMUSG00000065447 MGI:3619328 miRNA gene microRNA 302d
3 gene 127.5457 127.5458 positive MGI_C57BL6J_3619373 Mir367 miRBase:MI0003531,NCBI_Gene:723911,ENSEMBL:ENSMUSG00000065413 MGI:3619373 miRNA gene microRNA 367
3 gene 127.5534 127.6180 positive MGI_C57BL6J_1918893 Zgrf1 NCBI_Gene:71643,ENSEMBL:ENSMUSG00000051278 MGI:1918893 protein coding gene zinc finger, GRF-type containing 1
3 gene 127.5562 127.5576 negative MGI_C57BL6J_5663866 Gm43729 ENSEMBL:ENSMUSG00000105104 MGI:5663866 lncRNA gene predicted gene 43729
3 gene 127.6262 127.6281 negative MGI_C57BL6J_5623032 Gm40147 NCBI_Gene:105244554 MGI:5623032 lncRNA gene predicted gene, 40147
3 gene 127.6331 127.6356 positive MGI_C57BL6J_109619 Neurog2 NCBI_Gene:11924,ENSEMBL:ENSMUSG00000027967 MGI:109619 protein coding gene neurogenin 2
3 gene 127.6703 127.7806 negative MGI_C57BL6J_1918731 Alpk1 NCBI_Gene:71481,ENSEMBL:ENSMUSG00000028028 MGI:1918731 protein coding gene alpha-kinase 1
3 pseudogene 127.6919 127.6925 negative MGI_C57BL6J_3802104 Gm16238 NCBI_Gene:100191076,ENSEMBL:ENSMUSG00000089988 MGI:3802104 pseudogene predicted gene 16238
3 gene 127.7146 127.7170 negative MGI_C57BL6J_1919269 1500005C15Rik ENSEMBL:ENSMUSG00000104888 MGI:1919269 unclassified gene RIKEN cDNA 1500005C15 gene
3 gene 127.7172 127.7192 negative MGI_C57BL6J_5662724 Gm42587 ENSEMBL:ENSMUSG00000105701 MGI:5662724 unclassified gene predicted gene 42587
3 gene 127.7316 127.7317 positive MGI_C57BL6J_5453056 Gm23279 ENSEMBL:ENSMUSG00000088537 MGI:5453056 rRNA gene predicted gene, 23279
3 gene 127.7891 127.8322 positive MGI_C57BL6J_2182965 Tifa NCBI_Gene:211550,ENSEMBL:ENSMUSG00000046688 MGI:2182965 protein coding gene TRAF-interacting protein with forkhead-associated domain
3 gene 127.8070 127.8375 negative MGI_C57BL6J_2384822 Ap1ar NCBI_Gene:211556,ENSEMBL:ENSMUSG00000074238 MGI:2384822 protein coding gene adaptor-related protein complex 1 associated regulatory protein
3 gene 127.8296 127.8330 negative MGI_C57BL6J_5663791 Gm43654 ENSEMBL:ENSMUSG00000105804 MGI:5663791 unclassified gene predicted gene 43654
3 gene 127.8369 127.8386 positive MGI_C57BL6J_5663790 Gm43653 ENSEMBL:ENSMUSG00000105447 MGI:5663790 lncRNA gene predicted gene 43653
3 gene 127.8593 127.8676 positive MGI_C57BL6J_5594744 Gm35585 NCBI_Gene:102639226,ENSEMBL:ENSMUSG00000105550 MGI:5594744 lncRNA gene predicted gene, 35585
3 gene 127.8632 127.8639 negative MGI_C57BL6J_5663789 Gm43652 ENSEMBL:ENSMUSG00000105008 MGI:5663789 unclassified gene predicted gene 43652
3 gene 127.8691 127.8963 negative MGI_C57BL6J_1917867 Fam241a NCBI_Gene:70617,ENSEMBL:ENSMUSG00000050549 MGI:1917867 protein coding gene family with sequence similarity 241, member A
3 gene 127.9162 127.9552 positive MGI_C57BL6J_5439414 9830132P13Rik NCBI_Gene:329753,ENSEMBL:ENSMUSG00000104763 MGI:5439414 lncRNA gene RIKEN cDNA 9830132P13 gene
3 gene 127.9707 127.9729 positive MGI_C57BL6J_5594826 Gm35667 NCBI_Gene:102639331,ENSEMBL:ENSMUSG00000106437 MGI:5594826 lncRNA gene predicted gene, 35667
3 gene 128.0387 128.0407 positive MGI_C57BL6J_3642040 Gm10650 ENSEMBL:ENSMUSG00000074237 MGI:3642040 protein coding gene predicted gene 10650
3 gene 128.1170 128.2316 negative MGI_C57BL6J_3028083 D030025E07Rik NCBI_Gene:402774,ENSEMBL:ENSMUSG00000105816 MGI:3028083 lncRNA gene RIKEN cDNA D030025E07 gene
3 pseudogene 128.2807 128.2811 negative MGI_C57BL6J_5663793 Gm43656 ENSEMBL:ENSMUSG00000106119 MGI:5663793 pseudogene predicted gene 43656
chr type start stop strand ID Name Dbxref gene_id mgi_type description
3 gene 129.5274 129.5324 negative MGI_C57BL6J_5595145 Gm35986 NCBI_Gene:102639747,ENSEMBL:ENSMUSG00000105837 MGI:5595145 lncRNA gene predicted gene, 35986
3 gene 129.5324 129.6385 positive MGI_C57BL6J_2156528 Elovl6 NCBI_Gene:170439,ENSEMBL:ENSMUSG00000041220 MGI:2156528 protein coding gene ELOVL family member 6, elongation of long chain fatty acids (yeast)
3 gene 129.5381 129.5398 positive MGI_C57BL6J_5663209 Gm43072 ENSEMBL:ENSMUSG00000106092 MGI:5663209 unclassified gene predicted gene 43072
3 gene 129.6776 129.7554 negative MGI_C57BL6J_95290 Egf NCBI_Gene:13645,ENSEMBL:ENSMUSG00000028017 MGI:95290 protein coding gene epidermal growth factor
3 gene 129.6841 129.6842 negative MGI_C57BL6J_5454292 Gm24515 ENSEMBL:ENSMUSG00000092701 MGI:5454292 miRNA gene predicted gene, 24515
3 gene 129.7288 129.7402 positive MGI_C57BL6J_5662834 Gm42697 ENSEMBL:ENSMUSG00000106120 MGI:5662834 lncRNA gene predicted gene 42697
3 gene 129.7453 129.7502 positive MGI_C57BL6J_5662787 Gm42650 ENSEMBL:ENSMUSG00000105596 MGI:5662787 lncRNA gene predicted gene 42650
3 gene 129.7538 129.7639 positive MGI_C57BL6J_2441710 6330410L21Rik NCBI_Gene:319224,ENSEMBL:ENSMUSG00000105960 MGI:2441710 lncRNA gene RIKEN cDNA 6330410L21 gene
3 gene 129.7879 129.8040 negative MGI_C57BL6J_2685267 Lrit3 NCBI_Gene:242235,ENSEMBL:ENSMUSG00000093865 MGI:2685267 protein coding gene leucine-rich repeat, immunoglobulin-like and transmembrane domains 3
3 gene 129.7976 129.8156 positive MGI_C57BL6J_5595289 Gm36130 NCBI_Gene:102639932 MGI:5595289 lncRNA gene predicted gene, 36130
3 gene 129.8044 129.8226 negative MGI_C57BL6J_1097709 Rrh NCBI_Gene:20132,ENSEMBL:ENSMUSG00000028012 MGI:1097709 protein coding gene retinal pigment epithelium derived rhodopsin homolog
3 gene 129.8249 129.8314 negative MGI_C57BL6J_1930948 Gar1 NCBI_Gene:68147,ENSEMBL:ENSMUSG00000028010 MGI:1930948 protein coding gene GAR1 ribonucleoprotein
3 gene 129.8359 129.8753 positive MGI_C57BL6J_105937 Cfi NCBI_Gene:12630,ENSEMBL:ENSMUSG00000058952 MGI:105937 protein coding gene complement component factor i
3 gene 129.8442 129.8472 negative MGI_C57BL6J_5595339 Gm36180 NCBI_Gene:102639999 MGI:5595339 lncRNA gene predicted gene, 36180
3 gene 129.8786 129.8958 positive MGI_C57BL6J_1913600 Pla2g12a NCBI_Gene:66350,ENSEMBL:ENSMUSG00000027999 MGI:1913600 protein coding gene phospholipase A2, group XIIA
3 gene 129.8959 129.9014 negative MGI_C57BL6J_5826462 Gm46825 NCBI_Gene:108168900 MGI:5826462 lncRNA gene predicted gene, 46825
3 gene 129.9014 129.9141 positive MGI_C57BL6J_1312921 Casp6 NCBI_Gene:12368,ENSEMBL:ENSMUSG00000027997 MGI:1312921 protein coding gene caspase 6
3 gene 129.9065 129.9103 positive MGI_C57BL6J_5623035 Gm40150 NCBI_Gene:105244557 MGI:5623035 lncRNA gene predicted gene, 40150
3 gene 129.9150 129.9702 negative MGI_C57BL6J_1914065 Mcub NCBI_Gene:66815,ENSEMBL:ENSMUSG00000027994 MGI:1914065 protein coding gene mitochondrial calcium uniporter dominant negative beta subunit
3 gene 129.9465 129.9472 negative MGI_C57BL6J_5623036 Gm40151 NCBI_Gene:105244558 MGI:5623036 lncRNA gene predicted gene, 40151
3 gene 129.9828 130.0616 negative MGI_C57BL6J_2139764 Sec24b NCBI_Gene:99683,ENSEMBL:ENSMUSG00000001052 MGI:2139764 protein coding gene Sec24 related gene family, member B (S. cerevisiae)
3 pseudogene 130.0684 130.0690 positive MGI_C57BL6J_3645563 Gm9396 NCBI_Gene:668844,ENSEMBL:ENSMUSG00000063328 MGI:3645563 pseudogene predicted gene 9396
3 pseudogene 130.0808 130.0811 positive MGI_C57BL6J_5662800 Gm42663 ENSEMBL:ENSMUSG00000106072 MGI:5662800 pseudogene predicted gene 42663
3 gene 130.1315 130.1829 positive MGI_C57BL6J_1922224 4930502M04Rik NA NA unclassified non-coding RNA gene RIKEN cDNA 4930502M04 gene
3 gene 130.1315 130.5999 positive MGI_C57BL6J_1924268 Col25a1 NCBI_Gene:77018,ENSEMBL:ENSMUSG00000058897 MGI:1924268 protein coding gene collagen, type XXV, alpha 1
3 pseudogene 130.1404 130.1453 positive MGI_C57BL6J_3645564 Gm9397 NCBI_Gene:668845,ENSEMBL:ENSMUSG00000106276 MGI:3645564 pseudogene predicted gene 9397
3 gene 130.2055 130.2056 positive MGI_C57BL6J_5452459 Gm22682 ENSEMBL:ENSMUSG00000065788 MGI:5452459 snRNA gene predicted gene, 22682
3 gene 130.5395 130.5456 positive MGI_C57BL6J_5663347 Gm43210 ENSEMBL:ENSMUSG00000105011 MGI:5663347 unclassified gene predicted gene 43210
3 gene 130.5619 130.5638 positive MGI_C57BL6J_5663348 Gm43211 ENSEMBL:ENSMUSG00000105760 MGI:5663348 unclassified gene predicted gene 43211
3 gene 130.5921 130.5949 positive MGI_C57BL6J_5662974 Gm42837 ENSEMBL:ENSMUSG00000105520 MGI:5662974 unclassified gene predicted gene 42837
3 gene 130.6174 130.6375 positive MGI_C57BL6J_1919010 Etnppl NCBI_Gene:71760,ENSEMBL:ENSMUSG00000019232 MGI:1919010 protein coding gene ethanolamine phosphate phospholyase
3 gene 130.6320 130.6334 negative MGI_C57BL6J_5595481 Gm36322 NCBI_Gene:102640195 MGI:5595481 lncRNA gene predicted gene, 36322
3 gene 130.6459 130.6953 negative MGI_C57BL6J_5595532 Gm36373 NCBI_Gene:102640261 MGI:5595532 lncRNA gene predicted gene, 36373
3 gene 130.6959 130.7094 negative MGI_C57BL6J_1913607 Ostc NCBI_Gene:66357,ENSEMBL:ENSMUSG00000041084 MGI:1913607 protein coding gene oligosaccharyltransferase complex subunit (non-catalytic)
3 gene 130.7036 130.7059 negative MGI_C57BL6J_5663135 Gm42998 ENSEMBL:ENSMUSG00000105466 MGI:5663135 unclassified gene predicted gene 42998
3 gene 130.7268 130.7304 negative MGI_C57BL6J_1915686 Rpl34 NCBI_Gene:68436,ENSEMBL:ENSMUSG00000062006 MGI:1915686 protein coding gene ribosomal protein L34
3 gene 130.7305 130.7716 positive MGI_C57BL6J_5663134 Gm42997 ENSEMBL:ENSMUSG00000105789 MGI:5663134 lncRNA gene predicted gene 42997
3 pseudogene 130.7575 130.7578 positive MGI_C57BL6J_5663661 Gm43524 ENSEMBL:ENSMUSG00000106260 MGI:5663661 pseudogene predicted gene 43524
3 gene 130.7593 130.7621 positive MGI_C57BL6J_5663659 Gm43522 ENSEMBL:ENSMUSG00000105716 MGI:5663659 lncRNA gene predicted gene 43522
3 gene 130.7921 130.8040 negative MGI_C57BL6J_5595602 Gm36443 NCBI_Gene:102640363 MGI:5595602 lncRNA gene predicted gene, 36443
3 gene 130.8385 130.9373 negative MGI_C57BL6J_1917148 2010110G14Rik ENSEMBL:ENSMUSG00000106095 MGI:1917148 lncRNA gene RIKEN cDNA 2010110G14 gene
3 pseudogene 130.8464 130.8470 negative MGI_C57BL6J_3649176 Gm5982 NCBI_Gene:546811,ENSEMBL:ENSMUSG00000104984 MGI:3649176 pseudogene predicted gene 5982
3 gene 130.8518 130.8688 positive MGI_C57BL6J_5595679 Gm36520 NCBI_Gene:102640465,ENSEMBL:ENSMUSG00000104557 MGI:5595679 lncRNA gene predicted gene, 36520
3 gene 130.8709 130.8711 negative MGI_C57BL6J_5455867 Gm26090 ENSEMBL:ENSMUSG00000088522 MGI:5455867 snoRNA gene predicted gene, 26090
3 gene 130.8741 130.8768 positive MGI_C57BL6J_5663488 Gm43351 ENSEMBL:ENSMUSG00000105769 MGI:5663488 lncRNA gene predicted gene 43351
3 gene 130.8849 130.8856 positive MGI_C57BL6J_5663487 Gm43350 ENSEMBL:ENSMUSG00000105628 MGI:5663487 unclassified gene predicted gene 43350
3 gene 130.9017 130.9030 positive MGI_C57BL6J_1923318 5830437K03Rik ENSEMBL:ENSMUSG00000104579 MGI:1923318 unclassified gene RIKEN cDNA 5830437K03 gene
3 gene 130.9235 130.9248 negative MGI_C57BL6J_5663486 Gm43349 ENSEMBL:ENSMUSG00000106249 MGI:5663486 lncRNA gene predicted gene 43349
3 pseudogene 130.9291 130.9308 negative MGI_C57BL6J_3645472 Gm5855 NCBI_Gene:545568,ENSEMBL:ENSMUSG00000105558 MGI:3645472 pseudogene predicted gene 5855
3 gene 131.0238 131.0264 negative MGI_C57BL6J_2442445 A430072C10Rik ENSEMBL:ENSMUSG00000104859 MGI:2442445 unclassified gene RIKEN cDNA A430072C10 gene
3 gene 131.1016 131.1080 negative MGI_C57BL6J_5595762 Gm36603 NCBI_Gene:102640569 MGI:5595762 lncRNA gene predicted gene, 36603
3 gene 131.1090 131.1121 negative MGI_C57BL6J_5663489 Lef1os1 ENSEMBL:ENSMUSG00000106086 MGI:5663489 antisense lncRNA gene LEF1 opposite strand RNA 1
3 gene 131.1103 131.2244 positive MGI_C57BL6J_96770 Lef1 NCBI_Gene:16842,ENSEMBL:ENSMUSG00000027985 MGI:96770 protein coding gene lymphoid enhancer binding factor 1
3 gene 131.1368 131.1390 positive MGI_C57BL6J_5662586 Gm42449 ENSEMBL:ENSMUSG00000104612 MGI:5662586 unclassified gene predicted gene 42449
3 gene 131.1918 131.1930 positive MGI_C57BL6J_1925142 6720418B01Rik NA NA unclassified gene RIKEN cDNA 6720418B01 gene
3 gene 131.2334 131.2721 negative MGI_C57BL6J_96009 Hadh NCBI_Gene:15107,ENSEMBL:ENSMUSG00000027984 MGI:96009 protein coding gene hydroxyacyl-Coenzyme A dehydrogenase
3 pseudogene 131.2841 131.2851 negative MGI_C57BL6J_5010677 Gm18492 NCBI_Gene:100417267,ENSEMBL:ENSMUSG00000106268 MGI:5010677 pseudogene predicted gene, 18492
3 gene 131.2884 131.3032 negative MGI_C57BL6J_1918769 Cyp2u1 NCBI_Gene:71519,ENSEMBL:ENSMUSG00000027983 MGI:1918769 protein coding gene cytochrome P450, family 2, subfamily u, polypeptide 1
3 gene 131.3026 131.3172 positive MGI_C57BL6J_1925437 4930534D22Rik NCBI_Gene:100503594,ENSEMBL:ENSMUSG00000097761 MGI:1925437 lncRNA gene RIKEN cDNA 4930534D22 gene
3 gene 131.3190 131.4914 negative MGI_C57BL6J_1921692 Sgms2 NCBI_Gene:74442,ENSEMBL:ENSMUSG00000050931 MGI:1921692 protein coding gene sphingomyelin synthase 2
3 pseudogene 131.3605 131.3609 positive MGI_C57BL6J_5663253 Gm43116 NCBI_Gene:108168901,ENSEMBL:ENSMUSG00000104754 MGI:5663253 pseudogene predicted gene 43116
3 gene 131.4906 131.4992 positive MGI_C57BL6J_5595912 Gm36753 NCBI_Gene:102640761 MGI:5595912 lncRNA gene predicted gene, 36753
3 gene 131.5091 131.5111 positive MGI_C57BL6J_5596022 Gm36863 NCBI_Gene:102640912 MGI:5596022 lncRNA gene predicted gene, 36863
3 gene 131.5648 131.6437 positive MGI_C57BL6J_1330587 Papss1 NCBI_Gene:23971,ENSEMBL:ENSMUSG00000028032 MGI:1330587 protein coding gene 3’-phosphoadenosine 5’-phosphosulfate synthase 1
3 gene 131.5876 131.5895 positive MGI_C57BL6J_5596076 Gm36917 NCBI_Gene:102640987 MGI:5596076 lncRNA gene predicted gene, 36917
3 gene 131.6104 131.6138 negative MGI_C57BL6J_5663018 Gm42881 ENSEMBL:ENSMUSG00000105973 MGI:5663018 unclassified gene predicted gene 42881
3 gene 131.7598 132.0307 positive MGI_C57BL6J_5589024 Gm29865 NCBI_Gene:102631558,ENSEMBL:ENSMUSG00000105331 MGI:5589024 lncRNA gene predicted gene, 29865
3 pseudogene 131.8991 131.8995 negative MGI_C57BL6J_3030209 Olfr375-ps1 NCBI_Gene:257879,ENSEMBL:ENSMUSG00000104853 MGI:3030209 pseudogene olfactory receptor 375, pseudogene 1
3 gene 131.9183 131.9184 positive MGI_C57BL6J_5455880 Gm26103 ENSEMBL:ENSMUSG00000087877 MGI:5455880 snRNA gene predicted gene, 26103
3 gene 132.0073 132.0582 positive MGI_C57BL6J_5589108 Gm29949 NCBI_Gene:102631666 MGI:5589108 lncRNA gene predicted gene, 29949
3 gene 132.0823 132.0824 negative MGI_C57BL6J_5452198 Gm22421 ENSEMBL:ENSMUSG00000064992 MGI:5452198 snRNA gene predicted gene, 22421
3 gene 132.0852 132.1803 positive MGI_C57BL6J_1890663 Dkk2 NCBI_Gene:56811,ENSEMBL:ENSMUSG00000028031 MGI:1890663 protein coding gene dickkopf WNT signaling pathway inhibitor 2
3 gene 132.4437 132.4455 negative MGI_C57BL6J_5663017 Gm42880 ENSEMBL:ENSMUSG00000106280 MGI:5663017 lncRNA gene predicted gene 42880
3 gene 132.4796 132.5004 positive MGI_C57BL6J_5589306 Gm30147 NCBI_Gene:102631945 MGI:5589306 lncRNA gene predicted gene, 30147
3 gene 132.5376 132.5377 negative MGI_C57BL6J_5455084 Gm25307 ENSEMBL:ENSMUSG00000089510 MGI:5455084 snRNA gene predicted gene, 25307
3 gene 132.6298 132.6478 positive MGI_C57BL6J_3647547 Gimd1 NCBI_Gene:433653,ENSEMBL:ENSMUSG00000091721 MGI:3647547 protein coding gene GIMAP family P-loop NTPase domain containing 1
3 pseudogene 132.6551 132.6563 negative MGI_C57BL6J_3648832 Gm9402 NCBI_Gene:668857,ENSEMBL:ENSMUSG00000106313 MGI:3648832 pseudogene predicted gene 9402
3 gene 132.6605 132.6844 negative MGI_C57BL6J_102774 Aimp1 NCBI_Gene:13722,ENSEMBL:ENSMUSG00000028029 MGI:102774 protein coding gene aminoacyl tRNA synthetase complex-interacting multifunctional protein 1
3 gene 132.6840 132.8417 positive MGI_C57BL6J_2445052 Tbck NCBI_Gene:271981,ENSEMBL:ENSMUSG00000028030 MGI:2445052 protein coding gene TBC1 domain containing kinase
3 gene 132.7674 132.7694 positive MGI_C57BL6J_5663009 Gm42872 ENSEMBL:ENSMUSG00000105719 MGI:5663009 unclassified gene predicted gene 42872
3 gene 132.7721 132.7829 negative MGI_C57BL6J_5589453 Gm30294 NCBI_Gene:102632141 MGI:5589453 lncRNA gene predicted gene, 30294
3 gene 132.7872 132.7873 negative MGI_C57BL6J_5452099 Gm22322 ENSEMBL:ENSMUSG00000087776 MGI:5452099 snoRNA gene predicted gene, 22322
3 gene 132.8063 132.8095 positive MGI_C57BL6J_5663013 Gm42876 ENSEMBL:ENSMUSG00000105691 MGI:5663013 unclassified gene predicted gene 42876
3 gene 132.8422 132.8786 negative MGI_C57BL6J_5588970 Gm29811 NCBI_Gene:101243624,ENSEMBL:ENSMUSG00000106230 MGI:5588970 lncRNA gene predicted gene, 29811
3 pseudogene 132.8423 132.8450 positive MGI_C57BL6J_3648825 Gm9403 NCBI_Gene:668858,ENSEMBL:ENSMUSG00000106499 MGI:3648825 pseudogene predicted gene 9403
3 gene 132.8817 132.9503 negative MGI_C57BL6J_2148811 Npnt NCBI_Gene:114249,ENSEMBL:ENSMUSG00000040998 MGI:2148811 protein coding gene nephronectin
3 gene 132.9399 132.9400 positive MGI_C57BL6J_5452973 Gm23196 ENSEMBL:ENSMUSG00000089431 MGI:5452973 snRNA gene predicted gene, 23196
3 gene 132.9818 133.0920 negative MGI_C57BL6J_1914803 Gstcd NCBI_Gene:67553,ENSEMBL:ENSMUSG00000028018 MGI:1914803 protein coding gene glutathione S-transferase, C-terminal domain containing
3 pseudogene 133.0293 133.0299 positive MGI_C57BL6J_5011333 Gm19148 NCBI_Gene:100418338,ENSEMBL:ENSMUSG00000104787 MGI:5011333 pseudogene predicted gene, 19148
3 gene 133.0506 133.0524 negative MGI_C57BL6J_5663011 Gm42874 ENSEMBL:ENSMUSG00000105259 MGI:5663011 unclassified gene predicted gene 42874
3 gene 133.0525 133.0543 negative MGI_C57BL6J_5663010 Gm42873 ENSEMBL:ENSMUSG00000105217 MGI:5663010 unclassified gene predicted gene 42873
3 gene 133.0918 133.1110 positive MGI_C57BL6J_1919043 Ints12 NCBI_Gene:71793,ENSEMBL:ENSMUSG00000028016 MGI:1919043 protein coding gene integrator complex subunit 12
3 gene 133.1123 133.2349 negative MGI_C57BL6J_1924919 Arhgef38 NCBI_Gene:77669,ENSEMBL:ENSMUSG00000040969 MGI:1924919 protein coding gene Rho guanine nucleotide exchange factor (GEF) 38
3 gene 133.3075 133.3100 negative MGI_C57BL6J_5663391 Gm43254 ENSEMBL:ENSMUSG00000105957 MGI:5663391 lncRNA gene predicted gene 43254
3 gene 133.3101 133.3782 positive MGI_C57BL6J_1922026 Ppa2 NCBI_Gene:74776,ENSEMBL:ENSMUSG00000028013 MGI:1922026 protein coding gene pyrophosphatase (inorganic) 2
3 gene 133.4317 133.4318 negative MGI_C57BL6J_5454819 Gm25042 ENSEMBL:ENSMUSG00000080506 MGI:5454819 miRNA gene predicted gene, 25042
3 gene 133.4637 133.5452 negative MGI_C57BL6J_2443298 Tet2 NCBI_Gene:214133,ENSEMBL:ENSMUSG00000040943 MGI:2443298 protein coding gene tet methylcytosine dioxygenase 2
3 gene 133.5451 133.5851 positive MGI_C57BL6J_5662704 Gm42567 ENSEMBL:ENSMUSG00000105085 MGI:5662704 lncRNA gene predicted gene 42567
3 pseudogene 133.5790 133.5911 negative MGI_C57BL6J_6118967 Gm49316 NCBI_Gene:102632793,ENSEMBL:ENSMUSG00000105595 MGI:6118967 pseudogene predicted gene 49316
3 gene 133.5884 133.5885 negative MGI_C57BL6J_5452788 Gm23011 ENSEMBL:ENSMUSG00000077336 MGI:5452788 snoRNA gene predicted gene, 23011
3 gene 133.6237 133.6348 negative MGI_C57BL6J_5610456 Gm37228 ENSEMBL:ENSMUSG00000102530 MGI:5610456 unclassified gene predicted gene, 37228
3 gene 133.6457 133.6638 negative MGI_C57BL6J_5623038 Gm40153 NCBI_Gene:105244560,ENSEMBL:ENSMUSG00000105952 MGI:5623038 lncRNA gene predicted gene, 40153
3 gene 133.7892 133.7915 negative MGI_C57BL6J_3643755 Gm6135 NCBI_Gene:620205,ENSEMBL:ENSMUSG00000106069 MGI:3643755 lncRNA gene prediticted gene 6135
3 gene 133.8159 133.8186 negative MGI_C57BL6J_5589643 Gm30484 NCBI_Gene:102632401,ENSEMBL:ENSMUSG00000104645 MGI:5589643 lncRNA gene predicted gene, 30484
3 gene 133.8306 134.2406 negative MGI_C57BL6J_5477185 Gm26691 NCBI_Gene:102632484,ENSEMBL:ENSMUSG00000097911 MGI:5477185 lncRNA gene predicted gene, 26691
3 gene 134.1470 134.1471 negative MGI_C57BL6J_5690753 Gm44361 ENSEMBL:ENSMUSG00000106130 MGI:5690753 miRNA gene predicted gene, 44361
3 gene 134.1604 134.1920 positive MGI_C57BL6J_5663329 Gm43192 ENSEMBL:ENSMUSG00000104556 MGI:5663329 lncRNA gene predicted gene 43192
3 pseudogene 134.1809 134.1814 positive MGI_C57BL6J_5663330 Gm43193 ENSEMBL:ENSMUSG00000105523 MGI:5663330 pseudogene predicted gene 43193
3 gene 134.1999 134.2132 positive MGI_C57BL6J_5589807 Gm30648 NCBI_Gene:102632621,ENSEMBL:ENSMUSG00000106139 MGI:5589807 lncRNA gene predicted gene, 30648
3 gene 134.2364 134.2622 positive MGI_C57BL6J_2442112 Cxxc4 NCBI_Gene:319478,ENSEMBL:ENSMUSG00000044365 MGI:2442112 protein coding gene CXXC finger 4
3 gene 134.2405 134.2406 negative MGI_C57BL6J_3811410 Mir1895 miRBase:MI0008316,NCBI_Gene:100316832,ENSEMBL:ENSMUSG00000084564 MGI:3811410 miRNA gene microRNA 1895
3 pseudogene 134.2720 134.2725 negative MGI_C57BL6J_5663696 Gm43559 ENSEMBL:ENSMUSG00000104779 MGI:5663696 pseudogene predicted gene 43559
3 gene 134.3573 134.3575 positive MGI_C57BL6J_5663695 Gm43558 ENSEMBL:ENSMUSG00000106628 MGI:5663695 unclassified gene predicted gene 43558
3 pseudogene 134.3654 134.3661 negative MGI_C57BL6J_3648504 Gm6077 NCBI_Gene:606718,ENSEMBL:ENSMUSG00000104530 MGI:3648504 pseudogene predicted gene 6077
3 gene 134.4041 134.4236 negative MGI_C57BL6J_1922458 4930539C22Rik NCBI_Gene:75208,ENSEMBL:ENSMUSG00000105765 MGI:1922458 lncRNA gene RIKEN cDNA 4930539C22 gene
3 gene 134.4621 134.6308 negative MGI_C57BL6J_5477314 Gm26820 ENSEMBL:ENSMUSG00000097031 MGI:5477314 lncRNA gene predicted gene, 26820
3 gene 134.8290 134.9346 positive MGI_C57BL6J_892968 Tacr3 NCBI_Gene:21338,ENSEMBL:ENSMUSG00000028172 MGI:892968 protein coding gene tachykinin receptor 3
3 pseudogene 134.9630 134.9654 positive MGI_C57BL6J_3647155 Gm4860 NCBI_Gene:229837,ENSEMBL:ENSMUSG00000105559 MGI:3647155 pseudogene predicted gene 4860
3 pseudogene 134.9659 134.9672 positive MGI_C57BL6J_5663173 Gm43036 ENSEMBL:ENSMUSG00000106569 MGI:5663173 pseudogene predicted gene 43036
3 pseudogene 134.9715 134.9720 positive MGI_C57BL6J_5663172 Gm43035 ENSEMBL:ENSMUSG00000104539 MGI:5663172 pseudogene predicted gene 43035
3 pseudogene 135.1219 135.1224 positive MGI_C57BL6J_3780311 Gm2142 NCBI_Gene:100039290,ENSEMBL:ENSMUSG00000105538 MGI:3780311 pseudogene predicted gene 2142
3 gene 135.1474 135.1475 positive MGI_C57BL6J_5453825 Gm24048 ENSEMBL:ENSMUSG00000076366 MGI:5453825 miRNA gene predicted gene, 24048
3 pseudogene 135.1706 135.1713 positive MGI_C57BL6J_5010731 Gm18546 NCBI_Gene:100417343,ENSEMBL:ENSMUSG00000105266 MGI:5010731 pseudogene predicted gene, 18546
3 pseudogene 135.2090 135.2094 positive MGI_C57BL6J_5663170 Gm43033 ENSEMBL:ENSMUSG00000106079 MGI:5663170 pseudogene predicted gene 43033
3 gene 135.2125 135.2736 positive MGI_C57BL6J_1098230 Cenpe NCBI_Gene:229841,ENSEMBL:ENSMUSG00000045328 MGI:1098230 protein coding gene centromere protein E
3 gene 135.2812 135.3044 positive MGI_C57BL6J_1917022 Bdh2 NCBI_Gene:69772,ENSEMBL:ENSMUSG00000028167 MGI:1917022 protein coding gene 3-hydroxybutyrate dehydrogenase, type 2
3 gene 135.2820 135.3163 negative MGI_C57BL6J_5826463 Gm46826 NCBI_Gene:108168902 MGI:5826463 lncRNA gene predicted gene, 46826
3 gene 135.3077 135.3454 positive MGI_C57BL6J_2140077 Slc9b2 NCBI_Gene:97086,ENSEMBL:ENSMUSG00000037994 MGI:2140077 protein coding gene solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2
3 gene 135.3480 135.3978 positive MGI_C57BL6J_1921696 Slc9b1 NCBI_Gene:74446,ENSEMBL:ENSMUSG00000050150 MGI:1921696 protein coding gene solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1
3 gene 135.4064 135.4241 negative MGI_C57BL6J_1914256 Cisd2 NCBI_Gene:67006,ENSEMBL:ENSMUSG00000028165 MGI:1914256 protein coding gene CDGSH iron sulfur domain 2
3 gene 135.4252 135.4279 negative MGI_C57BL6J_1914308 2810428J06Rik ENSEMBL:ENSMUSG00000105981 MGI:1914308 unclassified gene RIKEN cDNA 2810428J06 gene
3 gene 135.4282 135.4359 negative MGI_C57BL6J_5663516 Gm43379 ENSEMBL:ENSMUSG00000105449 MGI:5663516 unclassified gene predicted gene 43379
3 gene 135.4362 135.4387 negative MGI_C57BL6J_1922477 4930539J05Rik NCBI_Gene:319587,ENSEMBL:ENSMUSG00000097032 MGI:1922477 lncRNA gene RIKEN cDNA 4930539J05 gene
3 gene 135.4381 135.4682 positive MGI_C57BL6J_1913355 Ube2d3 NCBI_Gene:66105,ENSEMBL:ENSMUSG00000078578 MGI:1913355 protein coding gene ubiquitin-conjugating enzyme E2D 3
3 gene 135.4717 135.4855 negative MGI_C57BL6J_5590151 Gm30992 NCBI_Gene:102633078 MGI:5590151 lncRNA gene predicted gene, 30992
3 pseudogene 135.4836 135.4840 positive MGI_C57BL6J_5662944 Gm42807 ENSEMBL:ENSMUSG00000105404 MGI:5662944 pseudogene predicted gene 42807
3 gene 135.4856 135.5714 positive MGI_C57BL6J_88175 Manba NCBI_Gene:110173,ENSEMBL:ENSMUSG00000028164 MGI:88175 protein coding gene mannosidase, beta A, lysosomal
3 pseudogene 135.4957 135.4959 positive MGI_C57BL6J_3802060 Gm16100 ENSEMBL:ENSMUSG00000083045 MGI:3802060 pseudogene predicted gene 16100
3 pseudogene 135.5250 135.5268 negative MGI_C57BL6J_3644634 Oaz2-ps NCBI_Gene:102633210,ENSEMBL:ENSMUSG00000083610 MGI:3644634 pseudogene ornithine decarboxylase antizyme 2, pseudogene
3 gene 135.5847 135.6920 negative MGI_C57BL6J_97312 Nfkb1 NCBI_Gene:18033,ENSEMBL:ENSMUSG00000028163 MGI:97312 protein coding gene nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105
3 gene 135.6116 135.6128 positive MGI_C57BL6J_5826464 Gm46827 NCBI_Gene:108168903 MGI:5826464 lncRNA gene predicted gene, 46827
3 gene 135.6507 135.6546 negative MGI_C57BL6J_5663567 Gm43430 ENSEMBL:ENSMUSG00000106149 MGI:5663567 unclassified gene predicted gene 43430
3 gene 135.7273 135.7287 positive MGI_C57BL6J_3642121 Gm9799 NA NA protein coding gene predicted gene 9799
3 gene 135.8161 135.8161 negative MGI_C57BL6J_1923004 9030607L02Rik NA NA unclassified gene RIKEN cDNA 9030607L02 gene
3 gene 135.8169 135.8886 positive MGI_C57BL6J_1914797 Slc39a8 NCBI_Gene:67547,ENSEMBL:ENSMUSG00000053897 MGI:1914797 protein coding gene solute carrier family 39 (metal ion transporter), member 8
3 gene 135.8337 135.8403 negative MGI_C57BL6J_1918288 4933401H06Rik NCBI_Gene:71038,ENSEMBL:ENSMUSG00000106306 MGI:1918288 lncRNA gene RIKEN cDNA 4933401H06 gene
3 gene 135.8603 135.8626 positive MGI_C57BL6J_5663566 Gm43429 ENSEMBL:ENSMUSG00000106290 MGI:5663566 unclassified gene predicted gene 43429
3 gene 135.8721 135.8760 positive MGI_C57BL6J_5663565 Gm43428 ENSEMBL:ENSMUSG00000105681 MGI:5663565 unclassified gene predicted gene 43428
3 gene 135.9018 136.1672 positive MGI_C57BL6J_5590402 Gm31243 NCBI_Gene:102633410,ENSEMBL:ENSMUSG00000104710 MGI:5590402 lncRNA gene predicted gene, 31243
3 pseudogene 135.9023 135.9028 negative MGI_C57BL6J_5010515 Gm18330 NCBI_Gene:100416947,ENSEMBL:ENSMUSG00000106141 MGI:5010515 pseudogene predicted gene, 18330
3 pseudogene 135.9632 135.9728 negative MGI_C57BL6J_3704226 Gm16500 NCBI_Gene:100039350 MGI:3704226 pseudogene predicted gene 16500
3 pseudogene 135.9635 135.9638 negative MGI_C57BL6J_5663739 Gm43602 ENSEMBL:ENSMUSG00000105937 MGI:5663739 pseudogene predicted gene 43602
3 pseudogene 136.0492 136.0517 negative MGI_C57BL6J_3779483 Gm5281 NCBI_Gene:383923,ENSEMBL:ENSMUSG00000105244 MGI:3779483 pseudogene predicted gene 5281
3 gene 136.0534 136.3261 negative MGI_C57BL6J_2442120 Bank1 NCBI_Gene:242248,ENSEMBL:ENSMUSG00000037922 MGI:2442120 protein coding gene B cell scaffold protein with ankyrin repeats 1
3 pseudogene 136.3315 136.3330 positive MGI_C57BL6J_3645775 Gm9408 NCBI_Gene:668868,ENSEMBL:ENSMUSG00000105869 MGI:3645775 pseudogene predicted gene 9408
3 pseudogene 136.3462 136.3464 positive MGI_C57BL6J_5663539 Gm43402 ENSEMBL:ENSMUSG00000106363 MGI:5663539 pseudogene predicted gene 43402
3 gene 136.4353 136.4493 negative MGI_C57BL6J_1917305 1700030L20Rik NCBI_Gene:70055,ENSEMBL:ENSMUSG00000099508 MGI:1917305 lncRNA gene RIKEN cDNA 1700030L20 gene
3 gene 136.6701 136.9377 positive MGI_C57BL6J_107164 Ppp3ca NCBI_Gene:19055,ENSEMBL:ENSMUSG00000028161 MGI:107164 protein coding gene protein phosphatase 3, catalytic subunit, alpha isoform
3 gene 136.7012 136.7027 positive MGI_C57BL6J_5662959 Gm42822 ENSEMBL:ENSMUSG00000106596 MGI:5662959 unclassified gene predicted gene 42822
3 gene 136.7590 136.7600 negative MGI_C57BL6J_1922633 4930599N24Rik ENSEMBL:ENSMUSG00000105545 MGI:1922633 unclassified gene RIKEN cDNA 4930599N24 gene
3 gene 136.7983 136.7984 negative MGI_C57BL6J_5690719 Gm44327 ENSEMBL:ENSMUSG00000106439 MGI:5690719 miRNA gene predicted gene, 44327

Additive covariates

Significance thresholds

operm <- scan1perm(pr.qc, covars["rz.age"], model="normal", addcovar=addcovar, n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)
significance.level autosomes X
0.01 6.215670 6.980791
0.05 5.415470 6.832073
0.1 4.412724 6.637599

Genome-wide scan

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
#par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - ICI vs. EOI (with additive covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')

  }
}


print("with no kinship")

[1] “with no kinship”

outfa <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar)

plot_lod(outfa,gm$gmap)

print("with normal kinship")

[1] “with normal kinship”

outka <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, kinship=kinship)

plot_lod(outka,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

outa <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, kinship=K)

plot_lod(outa,gm$gmap)

out = outa

print(paste0("number of samples in analysis = ", as.data.frame(attributes(out)$sample_size)[1,]))

[1] “number of samples in analysis = 267”

LOD peaks

Centimorgan (cM)

peaks<-find_peaks(out, gm$gmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)
if(nrow(peaks) > 0){
peaks$marker <- find_marker(gm$gmap, chr=peaks$chr,pos=peaks$pos)
names(peaks)[2] <- c("phenotype")
peaks <- peaks[-1]

rownames(peaks) <- NULL
print(kable(peaks, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

#plot only peak chromosomes

plot_lod_chr<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (with additive covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()

  }
}


} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 5.41546972581755 [autosomes]/6.83207325744769 [x-chromosome]”

if(nrow(peaks) < 50 & nrow(peaks) > 0){

for(i in unique(peaks$chr)){
#for (i in 1:nrow(peaks)){
  #plot_lod_chr(out,gm$gmap, peaks$chr[i])
  plot_lod_chr(out,gm$gmap, i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 5.41546972581755 [autosomes]/6.83207325744769 [x-chromosome]”

Megabase (MB)

peaks_mba<-find_peaks(out, gm$pmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)
if(nrow(peaks) > 0){
peaks_mba$marker <- find_marker(gm$pmap, chr=peaks_mba$chr,pos=peaks_mba$pos)
names(peaks_mba)[2] <- c("phenotype")
peaks_mba <- peaks_mba[-1]

rownames(peaks_mba) <- NULL
print(kable(peaks_mba, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

plot_lod_chr_mb<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (with additive covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 5.41546972581755 [autosomes]/6.83207325744769 [x-chromosome]”

if(nrow(peaks_mba) < 50 & nrow(peaks_mba) > 0){

for(i in unique(peaks_mba$chr)){
#for (i in 1:nrow(peaks_mba)){
  #plot_lod_chr_mb(out,gm$pmap, peaks_mba$chr[i])
  plot_lod_chr_mb(out,gm$pmap,i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 5.41546972581755 [autosomes]/6.83207325744769 [x-chromosome]”

QTL effects

For each peak LOD location we give a list of gene

if(nrow(peaks) < 50 & nrow(peaks) > 0){
for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE)
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(g, covars[,peaks$phenotype[i]], ylab=peaks$phenotype[i], sort=FALSE)
  title(main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," )"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  pr_sub <- pull_genoprobint(pr.qc, gm$gmap, chr, c(peaks$ci_lo[i], peaks$ci_hi[i]))
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  #coeff <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  #coeff_sub <- scan1coef(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  blup <- scan1blup(pr.qc[,chr], covars[peaks$phenotype[i]])
  blup_sub <- scan1blup(pr_sub[,chr], covars[peaks$phenotype[i]])

  write.csv(as.data.frame(blup_sub), paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-additive.covariates_blup_sub_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_52.csv"), quote=F)

  #plot_coef(coeff, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1coeff; positions in cM] )")
  #     )

  #plot_coef(coeff_sub, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1coeff; positions in cM] ) ")
  #     )


  plot_coef(blup, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," [scan1blup; positions in cM] )")
       )

  plot_coef(blup_sub, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i],"; 1.5 LOD drop interval [scan1blup; positions in cM] )")
       )


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  write.csv(genesgss, file=paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-additive.covariates_genes_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_52.csv"), quote=F)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  #genesgss <- 
  #table <- 
  #genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")] %>%
  #kable(escape = F,align = c("ccccccccccc")) %>%
  #kable_styling("striped", full_width = T) #%>% 
  #cat #%>%
  #column_spec(1, bold=TRUE)
#
  #print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], escape = F,align = c("ccccccccccc")))

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  #table
  

}
} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 5.41546972581755 [autosomes]/6.83207325744769 [x-chromosome]”

Interactive term

Significance thresholds

operm <- scan1perm(pr.qc, covars["rz.age"], model="normal", addcovar=addcovar, intcovar=addcovar, n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)
significance.level autosomes X
0.01 8.172135 9.315865
0.05 7.675942 9.240424
0.1 7.054153 9.141771

Genome-wide scan

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
#par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - ICI vs. EOI (with interactive covariate) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')

  }
}


print("with no kinship")

[1] “with no kinship”

outfi <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar)

plot_lod(outfi,gm$gmap)

outf.new <- outfi-outfa

plot_lod(outf.new,gm$gmap)

print("with normal kinship")

[1] “with normal kinship”

outki <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar, kinship=kinship)

plot_lod(outki,gm$gmap)

outk.new <- outki-outka

plot_lod(outk.new,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

outi <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar, kinship=K)

plot_lod(outi,gm$gmap)

outi.new <- outi-outa

plot_lod(outi.new,gm$gmap)

out = outi.new


print(paste0("number of samples in analysis = ", as.data.frame(attributes(out)$sample_size)[1,]))

[1] “number of samples in analysis = 267”

LOD peaks

Centimorgan (cM)

peaks<-find_peaks(out, gm$gmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)
if(nrow(peaks) > 0){
peaks$marker <- find_marker(gm$gmap, chr=peaks$chr,pos=peaks$pos)
names(peaks)[2] <- c("phenotype")
peaks <- peaks[-1]

rownames(peaks) <- NULL
print(kable(peaks, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

#plot only peak chromosomes

plot_lod_chr<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (with interactive covariate) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()

  }
}


} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 7.67594187344621 [autosomes]/9.24042402889532 [x-chromosome]”

if(nrow(peaks) < 50 & nrow(peaks) > 0){

for(i in unique(peaks$chr)){
#for (i in 1:nrow(peaks)){
  #plot_lod_chr(out,gm$gmap, peaks$chr[i])
  plot_lod_chr(out,gm$gmap, i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 7.67594187344621 [autosomes]/9.24042402889532 [x-chromosome]”

Megabase (MB)

peaks_mba<-find_peaks(out, gm$pmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)
if(nrow(peaks) > 0){
peaks_mba$marker <- find_marker(gm$pmap, chr=peaks_mba$chr,pos=peaks_mba$pos)
names(peaks_mba)[2] <- c("phenotype")
peaks_mba <- peaks_mba[-1]

rownames(peaks_mba) <- NULL
print(kable(peaks_mba, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

plot_lod_chr_mb<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. EOI (with interactive covariate) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 7.67594187344621 [autosomes]/9.24042402889532 [x-chromosome]”

if(nrow(peaks_mba) < 50 & nrow(peaks_mba) > 0){

for(i in unique(peaks_mba$chr)){
#for (i in 1:nrow(peaks_mba)){
  #plot_lod_chr_mb(out,gm$pmap, peaks_mba$chr[i])
  plot_lod_chr_mb(out,gm$pmap,i)
}

} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 7.67594187344621 [autosomes]/9.24042402889532 [x-chromosome]”

QTL effects

For each peak LOD location we give a list of gene

if(nrow(peaks) < 50 & nrow(peaks) > 0){
for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE)
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(g, covars[,peaks$phenotype[i]], ylab=peaks$phenotype[i], sort=FALSE)
  title(main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," )"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  pr_sub <- pull_genoprobint(pr.qc, gm$gmap, chr, c(peaks$ci_lo[i], peaks$ci_hi[i]))
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  #coeff <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  #coeff_sub <- scan1coef(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  blup <- scan1blup(pr.qc[,chr], covars[peaks$phenotype[i]])
  blup_sub <- scan1blup(pr_sub[,chr], covars[peaks$phenotype[i]])

  write.csv(as.data.frame(blup_sub), paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-interactive.covariate_blup_sub_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_52.csv"), quote=F)

  #plot_coef(coeff, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1coeff; positions in cM] )")
  #     )

  #plot_coef(coeff_sub, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1coeff; positions in cM] ) ")
  #     )


  plot_coef(blup, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," [scan1blup; positions in cM] )")
       )

  plot_coef(blup_sub, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i],"; 1.5 LOD drop interval [scan1blup; positions in cM] )")
       )


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  write.csv(genesgss, file=paste0("data/ici.vs.eoi_",peaks$phenotype[i],"-interactive.covariate_genes_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_5.batches_52.csv"), quote=F)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  #genesgss <- 
  #table <- 
  #genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")] %>%
  #kable(escape = F,align = c("ccccccccccc")) %>%
  #kable_styling("striped", full_width = T) #%>% 
  #cat #%>%
  #column_spec(1, bold=TRUE)
#
  #print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], escape = F,align = c("ccccccccccc")))

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  #table
  

}
} else {
  print(paste0("There are too many peaks (",nrow(peaks_mba)," peaks) that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are too many peaks (0 peaks) that have a LOD that reaches suggestive (p<0.05) level of 7.67594187344621 [autosomes]/9.24042402889532 [x-chromosome]”


R version 3.6.2 (2019-12-12)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Catalina 10.15.7

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] abind_1.4-5       qtl2_0.22         reshape2_1.4.4    ggplot2_3.3.5    
 [5] tibble_3.1.2      psych_2.0.7       readxl_1.3.1      cluster_2.1.0    
 [9] dplyr_1.0.8       optparse_1.6.6    rhdf5_2.28.1      mclust_5.4.6     
[13] tidyr_1.0.2       data.table_1.14.0 knitr_1.33        kableExtra_1.1.0 
[17] workflowr_1.6.2  

loaded via a namespace (and not attached):
 [1] httr_1.4.1        bit64_4.0.5       viridisLite_0.4.0 assertthat_0.2.1 
 [5] highr_0.9         blob_1.2.1        cellranger_1.1.0  yaml_2.2.1       
 [9] pillar_1.6.1      RSQLite_2.2.7     backports_1.2.1   lattice_0.20-38  
[13] glue_1.4.2        digest_0.6.27     promises_1.1.0    rvest_0.3.5      
[17] colorspace_2.0-2  htmltools_0.5.1.1 httpuv_1.5.2      plyr_1.8.6       
[21] pkgconfig_2.0.3   purrr_0.3.4       scales_1.1.1      webshot_0.5.2    
[25] getopt_1.20.3     later_1.0.0       git2r_0.26.1      generics_0.0.2   
[29] ellipsis_0.3.2    cachem_1.0.5      withr_2.4.2       cli_3.0.0        
[33] mnormt_1.5-7      magrittr_2.0.1    crayon_1.4.1      memoise_2.0.0    
[37] evaluate_0.14     fs_1.4.1          fansi_0.5.0       nlme_3.1-142     
[41] xml2_1.3.1        tools_3.6.2       hms_0.5.3         lifecycle_1.0.1  
[45] stringr_1.4.0     Rhdf5lib_1.6.3    munsell_0.5.0     compiler_3.6.2   
[49] rlang_1.0.2       grid_3.6.2        rstudioapi_0.13   rmarkdown_2.1    
[53] gtable_0.3.0      DBI_1.1.1         R6_2.5.0          fastmap_1.1.0    
[57] bit_4.0.4         utf8_1.2.1        rprojroot_1.3-2   readr_1.3.1      
[61] stringi_1.7.2     parallel_3.6.2    Rcpp_1.0.7        vctrs_0.3.8      
[65] tidyselect_1.1.2  xfun_0.24