QTL Analysis - rz transformed age of onset (rz.age) [ICI vs PBS] (corrected phenotype with outliers removed if any)

workflowr

• Summary
• Checks
• Past versions

Last updated: 2022-04-14

Checks: 5 2

Knit directory: Serreze-T1D_Workflow/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

---

R Markdown file: uncommitted changes

The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

Seed: set.seed(20220210)

The command set.seed(20220210) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Cache: none

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

File paths: absolute

Using absolute paths to the files within your workflowr project makes it difficult for you and others to run your code on a different machine. Change the absolute path(s) below to the suggested relative path(s) to make your code more reproducible.

absolute	relative
/Users/corneb/Documents/MyJax/CS/Projects/Serreze/qc/workflowr/Serreze-T1D_Workflow	.

Repository version: a8c2d1a

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version a8c2d1a. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

Ignored files:
    Ignored:    .DS_Store
    Ignored:    analysis/.DS_Store
    Ignored:    data/.DS_Store

Untracked files:
    Untracked:  analysis/3.1_phenotype.qc_corrected_5.batches_0.Rmd
    Untracked:  analysis/3.1_phenotype.qc_corrected_5.batches_52.Rmd
    Untracked:  analysis/3.1_phenotype.qc_corrected_5.batches_mis_0.Rmd
    Untracked:  analysis/3.1_phenotype.qc_corrected_5.batches_mis_52.Rmd
    Untracked:  analysis/3.1_phenotype.qc_corrected_5.batches_mis_vo.Rmd
    Untracked:  analysis/3.1_phenotype.qc_corrected_5.batches_vo.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.eoi_snpsqc_dis_no-x_updated_5.batches_11.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.eoi_snpsqc_dis_no-x_updated_5.batches_mis_11.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_1.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_5.batches_mis_1.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_1.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_11.Rmd
    Untracked:  analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated_5.batches_mis_11.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_changed.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis_changed.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_scanone_5.batches.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_scanone_5.batches_mis.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_oops.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_test.with.4.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_test.with.4.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_test.with.4_miss.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_test.with.4_miss.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_test.with.5.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_test.with.5.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_test.with.5_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_test.with.5_0.Rmd.R
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis_vo.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis_vo1.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_vo.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_vo1.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_52.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis_0.Rmd
    Untracked:  analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis_52.Rmd
    Untracked:  analysis/genotype.frequencies_ici.vs.eoi_5.batches_0.Rmd
    Untracked:  analysis/genotype.frequencies_ici.vs.eoi_5.batches_52.Rmd
    Untracked:  analysis/genotype.frequencies_ici.vs.eoi_5.batches_mis_0.Rmd
    Untracked:  analysis/genotype.frequencies_ici.vs.eoi_5.batches_mis_52.Rmd
    Untracked:  analysis/index_5.batches_additional_vo.Rmd
    Untracked:  data/GM_covar.csv
    Untracked:  data/GM_covar_BC312.csv
    Untracked:  data/bad_markers_all_4.batches.RData
    Untracked:  data/bad_markers_all_5.batches.RData
    Untracked:  data/blup_sub_chr10_lod.drop-1.5_5.batches.csv
    Untracked:  data/blup_sub_chr3_lod.drop-1.5.csv
    Untracked:  data/blup_sub_chr3_lod.drop-1.5_5.batches.csv
    Untracked:  data/blup_sub_chr4_lod.drop-1.5.csv
    Untracked:  data/blup_sub_chr4_lod.drop-1.5_5.batches.csv
    Untracked:  data/covar_cleaned_ici.vs.eoi.csv
    Untracked:  data/covar_cleaned_ici.vs.pbs.csv
    Untracked:  data/covar_corrected.cleaned_ici-early.vs.pbs_5.batches.csv
    Untracked:  data/covar_corrected.cleaned_ici-early.vs.pbs_5.batches_0.csv
    Untracked:  data/covar_corrected.cleaned_ici-early.vs.pbs_5.batches_52.csv
    Untracked:  data/covar_corrected.cleaned_ici-early.vs.pbs_5.batches_mis.csv
    Untracked:  data/covar_corrected.cleaned_ici-early.vs.pbs_5.batches_mis_0.csv
    Untracked:  data/covar_corrected.cleaned_ici-early.vs.pbs_5.batches_mis_52.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi1.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi_5.batches.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi_5.batches_0.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi_5.batches_52.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi_5.batches_mis.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi_5.batches_mis_0.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.eoi_5.batches_mis_52.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs1.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs_5.batches.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs_5.batches_0.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs_5.batches_52.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs_5.batches_mis.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs_5.batches_mis_0.csv
    Untracked:  data/covar_corrected.cleaned_ici.vs.pbs_5.batches_mis_52.csv
    Untracked:  data/covar_corrected_ici-early.vs.pbs_5.batches.csv
    Untracked:  data/covar_corrected_ici-early.vs.pbs_5.batches_0.csv
    Untracked:  data/covar_corrected_ici-early.vs.pbs_5.batches_52.csv
    Untracked:  data/covar_corrected_ici-early.vs.pbs_5.batches_mis.csv
    Untracked:  data/covar_corrected_ici-early.vs.pbs_5.batches_mis_0.csv
    Untracked:  data/covar_corrected_ici-early.vs.pbs_5.batches_mis_52.csv
    Untracked:  data/covar_corrected_ici.vs.eoi.csv
    Untracked:  data/covar_corrected_ici.vs.eoi1.csv
    Untracked:  data/covar_corrected_ici.vs.eoi_5.batches.csv
    Untracked:  data/covar_corrected_ici.vs.eoi_5.batches_0.csv
    Untracked:  data/covar_corrected_ici.vs.eoi_5.batches_52.csv
    Untracked:  data/covar_corrected_ici.vs.eoi_5.batches_mis.csv
    Untracked:  data/covar_corrected_ici.vs.eoi_5.batches_mis_0.csv
    Untracked:  data/covar_corrected_ici.vs.eoi_5.batches_mis_52.csv
    Untracked:  data/covar_corrected_ici.vs.pbs.csv
    Untracked:  data/covar_corrected_ici.vs.pbs1.csv
    Untracked:  data/covar_corrected_ici.vs.pbs_5.batches.csv
    Untracked:  data/covar_corrected_ici.vs.pbs_5.batches_0.csv
    Untracked:  data/covar_corrected_ici.vs.pbs_5.batches_52.csv
    Untracked:  data/covar_corrected_ici.vs.pbs_5.batches_mis.csv
    Untracked:  data/covar_corrected_ici.vs.pbs_5.batches_mis_0.csv
    Untracked:  data/covar_corrected_ici.vs.pbs_5.batches_mis_52.csv
    Untracked:  data/e.RData
    Untracked:  data/e_BC312.RData
    Untracked:  data/e_snpg_samqc_4.batches.RData
    Untracked:  data/e_snpg_samqc_4.batches_bc.RData
    Untracked:  data/e_snpg_samqc_5.batches.RData
    Untracked:  data/errors_ind_4.batches.RData
    Untracked:  data/errors_ind_4.batches_bc.RData
    Untracked:  data/errors_ind_5.batches.RData
    Untracked:  data/files.to.sync.txt
    Untracked:  data/fitqtl_chr3.peak_chr4.peak_additive.txt
    Untracked:  data/fitqtl_chr3.peak_chr4.peak_interacting.txt
    Untracked:  data/fitqtl_chr3.peak_chr4.peak_sex_additive.txt
    Untracked:  data/fitqtl_chr3.peak_chr4.peak_sex_interacting.txt
    Untracked:  data/g2blup_effects.csv
    Untracked:  data/g2blup_effects.xlsx
    Untracked:  data/genes_chr10_lod.drop-1.5_5.batches.csv
    Untracked:  data/genes_chr3_lod.drop-1.5.csv
    Untracked:  data/genes_chr3_lod.drop-1.5_5.batches.csv
    Untracked:  data/genes_chr4_lod.drop-1.5.csv
    Untracked:  data/genetic_map.csv
    Untracked:  data/genetic_map_BC312.csv
    Untracked:  data/genotype_errors_marker_4.batches.RData
    Untracked:  data/genotype_errors_marker_5.batches.RData
    Untracked:  data/genotype_freq_marker_4.batches.RData
    Untracked:  data/genotype_freq_marker_5.batches.RData
    Untracked:  data/gm_allqc_4.batches.RData
    Untracked:  data/gm_allqc_5.batches.RData
    Untracked:  data/gm_allqc_5.batches_mis.RData
    Untracked:  data/gm_samqc_3.batches.RData
    Untracked:  data/gm_samqc_4.batches.RData
    Untracked:  data/gm_samqc_4.batches_bc.RData
    Untracked:  data/gm_samqc_5.batches.RData
    Untracked:  data/gm_serreze.192.RData
    Untracked:  data/gm_serreze.BC312.RData
    Untracked:  data/ici-early.vs.pbs_age.of.onset-additive.covariates_blup_sub_chr-7_peak.marker-UNC13388811_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-additive.covariates_genes_chr-7_peak.marker-UNC13388811_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_genes_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_age.of.onset-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-10_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-10_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-10_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-10_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-10_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-10_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-11_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-11_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-11_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-11_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-11_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-11_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-12_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-12_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-12_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-12_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-12_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-12_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-13_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-13_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-13_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-13_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-13_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-13_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-14_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-14_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-14_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-14_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-14_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-14_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-15_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-15_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-15_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-15_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-15_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-15_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-16_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-16_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-16_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-16_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-16_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-16_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-17_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-17_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-17_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-17_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-17_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-17_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-18_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-18_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-18_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-18_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-18_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-18_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-19_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-19_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-19_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-19_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-19_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-19_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-1_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-1_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-1_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-1_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-1_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-1_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-2_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-2_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-2_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-2_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-2_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-2_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-3_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-3_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-3_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-3_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-3_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-3_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-4_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-4_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-4_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-4_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-4_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-4_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-5_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-5_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-6_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-6_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-6_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-6_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-6_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-6_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-7_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-7_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-7_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-7_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-7_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-7_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-8_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-8_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-8_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-8_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-8_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-8_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-9_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-9_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-9_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-9_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-9_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-9_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-X_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-X_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-X_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-X_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-X_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.full_chr-X_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-10_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-10_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-10_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-10_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-10_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-10_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-11_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-11_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-11_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-11_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-11_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-11_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-12_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-12_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-12_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-12_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-12_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-12_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-13_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-13_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-13_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-13_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-13_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-13_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-14_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-14_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-14_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-14_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-14_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-14_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-15_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-15_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-15_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-15_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-16_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-16_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-16_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-16_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-16_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-16_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-17_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-17_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-17_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-17_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-18_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-18_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-18_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-18_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-18_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-18_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-19_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-19_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-19_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-19_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-19_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-19_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-1_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-1_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-1_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-1_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-1_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-1_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-2_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-2_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-2_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-2_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-2_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-2_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-3_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-3_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-3_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-3_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-3_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-3_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-4_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-4_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-4_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-4_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-4_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-4_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-5_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-5_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-5_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-6_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-6_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-6_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-6_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-6_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-6_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-7_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-7_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-7_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-7_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-7_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-7_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-8_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-8_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-8_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-8_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-8_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-8_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-9_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-9_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-9_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-9_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-9_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-9_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-X_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-X_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-X_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-X_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-X_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_blup.qc_chr-X_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_gm_qtl_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_gm_qtl_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_gm_qtl_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_gm_qtl_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.geno.freq.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.geno.freq.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.probs.freq.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.probs.freq.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici-early.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici-early.vs.pbs_scanone_5.batches.Rdata
    Untracked:  data/ici-early.vs.pbs_scanone_5.batches_mis.Rdata
    Untracked:  data/ici-early.vs.pbs_scanone_snpsqc_5.batches.Rdata
    Untracked:  data/ici-early.vs.pbs_scanone_snpsqc_5.batches_mis.Rdata
    Untracked:  data/ici-early.vs.pbs_scanone_snpsqc_dis_no-x_updated_5.batches.Rdata
    Untracked:  data/ici-early.vs.pbs_scanone_snpsqc_dis_no-x_updated_5.batches_mis.Rdata
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-JAX00020646_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-JAX00292499_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-JAX00294019_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18216614_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18240977_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18311938_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18311938_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18343181_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18363544_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18363544_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18363544_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNC18376338_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-11_peak.marker-UNC20090524_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-2_peak.marker-UNCHS008007_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-2_peak.marker-UNCHS008007_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-ICR5263_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-ICR5263_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00105649_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00105649_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00106210_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00107193_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00220631_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00220631_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00516812_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00516812_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00517674_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00517674_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00518911r_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00518911r_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00522922_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00524205_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00529707r_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00529707r_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-JAX00535764_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4809586_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4809586_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4820379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4820379_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4875653_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4875653_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4901083_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4901083_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4909519_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4909519_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4912288_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4912288_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4915446_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4915446_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4923398_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4923398_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4938565_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4938565_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4945186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4945186_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4947492_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4947492_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4956618_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4956618_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4957168_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4957859_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4957859_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4959266_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4959266_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4960612_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4960612_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4961542_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4961542_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4979914_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4979914_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4990111_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC4990111_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5046545_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5055259_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5062524_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5068215_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5076935_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5082757_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5173293_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5193970_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5257268_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5264696_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5267813_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5270225_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5277061_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5278229_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5278229_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5282259_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5287977_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5301460_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5309136_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5321559_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5322455_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5329171_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5360055_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5778977_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5808246_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNC5916997_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008193_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008193_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008209_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008209_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008215_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008215_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008229_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008229_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008234_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008234_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008242_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008260_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008260_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008271_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008271_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008281_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008281_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008338_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008338_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008363_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008363_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008379_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008409_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008432_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008609_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008614_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008627_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008659_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008725_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009066_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009067_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009068_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009112_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009224_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009224_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009693_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009821_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCJPD001170_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCJPD001170_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCJPD001198_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCJPD001198_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-UNCJPD001276_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-sanger2496q_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-3_peak.marker-sanger2496q_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-4_peak.marker-UNC8250659_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-4_peak.marker-UNC8439633_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-4_peak.marker-UNC8439633_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-4_peak.marker-UNCHS012955_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-6_peak.marker-UNC11108920_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-6_peak.marker-UNC11108920_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-JAX00020646_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-JAX00292499_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-JAX00294019_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18216614_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18240977_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18311938_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18311938_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18343181_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18363544_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18363544_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18363544_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNC18376338_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-11_peak.marker-UNC20090524_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-2_peak.marker-UNCHS008007_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-2_peak.marker-UNCHS008007_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-ICR5263_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-ICR5263_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00105649_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00105649_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00106210_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00107193_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00220631_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00220631_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00516812_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00516812_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00517674_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00517674_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00518911r_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00518911r_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00522922_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00524205_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00529707r_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00529707r_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-JAX00535764_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4809586_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4809586_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4820379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4820379_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4875653_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4875653_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4901083_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4901083_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4909519_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4909519_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4912288_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4912288_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4915446_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4915446_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4923398_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4923398_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4938565_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4938565_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4945186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4945186_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4947492_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4947492_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4956618_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4956618_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4957168_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4957859_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4957859_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4959266_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4959266_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4960612_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4960612_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4961542_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4961542_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4979914_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4979914_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4990111_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC4990111_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5046545_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5055259_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5062524_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5068215_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5076935_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5082757_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5173293_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5193970_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5257268_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5264696_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5267813_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5270225_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5277061_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5278229_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5278229_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5282259_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5287977_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5301460_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5309136_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5321559_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5322455_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5329171_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5360055_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5778977_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5808246_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNC5916997_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008193_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008193_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008209_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008209_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008215_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008215_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008229_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008229_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008234_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008234_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008242_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008260_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008260_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008271_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008271_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008281_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008281_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008338_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008338_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008363_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008363_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008379_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008409_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008432_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008609_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008614_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008627_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008659_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008725_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009066_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009067_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009068_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009112_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009224_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009224_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009693_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCHS009821_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCJPD001170_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCJPD001170_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCJPD001198_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCJPD001198_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-UNCJPD001276_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-sanger2496q_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-3_peak.marker-sanger2496q_lod.drop-1.5_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-4_peak.marker-UNC8250659_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-4_peak.marker-UNC8439633_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-4_peak.marker-UNC8439633_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-4_peak.marker-UNCHS012955_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-6_peak.marker-UNC11108920_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-6_peak.marker-UNC11108920_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_age.of.onset-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-10_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-10_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-11_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-11_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-12_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-12_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-13_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-13_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-14_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-14_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-15_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-15_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-16_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-16_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-17_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-17_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-18_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-18_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-19_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-19_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-1_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-1_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-2_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-2_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-3_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-3_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-4_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-4_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-6_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-6_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-7_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-7_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-8_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-8_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-9_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-9_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-X_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.full_chr-X_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-10_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-10_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-10_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-10_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-10_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-10_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-10_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-11_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-11_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-11_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-11_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-11_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-11_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-11_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-12_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-12_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-12_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-12_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-12_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-12_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-12_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-13_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-13_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-13_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-13_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-13_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-13_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-13_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-14_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-14_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-14_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-14_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-14_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-14_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-15_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-15_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-15_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-15_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-15_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-16_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-16_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-16_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-16_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-16_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-16_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-17_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-17_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-17_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-17_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-17_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-17_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-18_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-18_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-18_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-18_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-18_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-18_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-19_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-19_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-19_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-19_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-19_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-19_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-1_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-1_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-1_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-1_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-1_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-1_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-1_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-2_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-2_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-2_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-2_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-2_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-2_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-2_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-3_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-3_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-3_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-3_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-3_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-3_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-3_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-4_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-4_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-4_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-4_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-4_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-4_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-4_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-5_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-6_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-6_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-6_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-6_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-6_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-6_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-6_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-7_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-7_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-7_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-7_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-7_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-7_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-7_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-8_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-8_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-8_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-8_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-8_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-8_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-8_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-9_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-9_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-9_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-9_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-9_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-9_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-9_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-X_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-X_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-X_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-X_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-X_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup.qc_chr-X_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-ICR4295_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-JAX00292499_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-JAX00292927_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-JAX00292927_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNC18154330_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNC18195765_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNC18216614_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNC18240977_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNC18856953_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNCJPD004316_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-10_peak.marker-UNCJPD009532_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-11_peak.marker-UNC19155926_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-11_peak.marker-UNC19481366_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-11_peak.marker-UNC19970181_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-11_peak.marker-UNCJPD004792_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-12_peak.marker-ICR4497_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-13_peak.marker-UNCHS036964_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-18_peak.marker-UNCHS045344_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-19_peak.marker-UNCJPD007087_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-1_peak.marker-ICR010_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-1_peak.marker-ICR010_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-2_peak.marker-UNC4609660_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-B6_rs31740628_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-ICR1269_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-ICR5325_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-ICR5347_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-ICR5348_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00104971_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00105059_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00105203_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00107930_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00107980_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00108068_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00108114_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00109750_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00189245_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00517218_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00517674_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00517906_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00518418_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00518684_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00518911r_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00520122_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00524717_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00524828_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00525380_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00525709_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00527291_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00527587_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00529707_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00529707r_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00531601_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-JAX00532122_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4673471_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4681411_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4793677_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4799475_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4809586_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4820379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4875653_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4909830_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4912288_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4914130_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4923398_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4945186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4947492_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4957168_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4957859_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4964062_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4979914_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4985064_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4990111_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC4991565_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5001723_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5042361_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5055259_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5076935_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5082757_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5173293_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5182782_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5193970_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5240484_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5256922_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5266664_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5266711_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5267813_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5274554_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5277061_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5282259_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5287977_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5301460_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5321559_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5322455_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5328596_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5350384_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5354724_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5375208_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5384072_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5400314_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5433945_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5435874_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5466669_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5517972_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5522257_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5523265_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5532424_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5553882_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5572051_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5582753_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5589260_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5595555_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5623239_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5639830_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5680234_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5682314_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5725356_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5727351_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5734420_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5743257_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5751567_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5752623_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5776974_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5778977_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5788507_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5792468_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5794598_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5795561_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5802298_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5806628_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5808246_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5817478_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5836999_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5841501_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5847927_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNC5966417_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008129_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008173_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008193_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008209_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008215_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008231_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008235_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008242_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008253_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008256_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008259_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008271_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008311_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008317_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008372_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008410_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008415_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008431_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008609_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008614_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008649_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008651_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008656_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008723_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008802_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008803_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008808_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008834_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008838_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008914_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008928_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008948_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008959_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008973_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS008987_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009001_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009025_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009034_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009087_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009109_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009142_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009207_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009216_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009224_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009306_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009316_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009364_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009377_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009382_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009387_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009395_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009413_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009428_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009463_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009503_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009532_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009541_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009560_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCHS009574_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCJPD001170_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCJPD001198_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCJPD001276_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCJPD001315_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCJPD001355_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCJPD001373_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-3_peak.marker-UNCJPD001382_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC6851205_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC8250659_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC8299912_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC8300499_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC8381981_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC8436434_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC8439633_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNC8530763_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS012948_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS012976_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS013118_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS013118_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS013118_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS013130_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS013139_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-4_peak.marker-UNCHS013304_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-5_peak.marker-JAX00590770_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-5_peak.marker-UNC10044126_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-7_peak.marker-ICR1830_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-7_peak.marker-UNC13170794_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-7_peak.marker-UNCHS019480_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-7_peak.marker-cr31snv87_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-8_peak.marker-JAX00667121_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-8_peak.marker-UNC15430711_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-9_peak.marker-UNC17203329_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-9_peak.marker-UNCHS024593_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-X_peak.marker-UNC30627130_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-X_peak.marker-UNCHS048313_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_additive_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_additive_5.batches_mis.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_additive_snpsqc_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_additive_snpsqc_dis_no-x_updated_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_additive_snpsqc_dis_no-x_updated_5.batches_mis.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_interacting_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_interacting_5.batches_mis.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_interacting_snpsqc_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_interacting_snpsqc_dis_no-x_updated_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_interacting_snpsqc_dis_no-x_updated_5.batches_mis.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_additive_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_additive_5.batches_mis.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_additive_snpsqc_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_additive_snpsqc_dis_no-x_updated_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_additive_snpsqc_dis_no-x_updated_5.batches_mis.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_interacting_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_interacting_5.batches_mis.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_interacting_snpsqc_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_interacting_snpsqc_dis_no-x_updated_5.batches.txt
    Untracked:  data/ici.vs.eoi_fitqtl_peaks_sex_interacting_snpsqc_dis_no-x_updated_5.batches_mis.mis.txt
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-ICR4295_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-JAX00292499_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-JAX00292927_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-JAX00292927_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNC18154330_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNC18195765_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNC18216614_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNC18240977_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNC18856953_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNCJPD004316_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-10_peak.marker-UNCJPD009532_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-11_peak.marker-UNC19155926_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-11_peak.marker-UNC19481366_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-11_peak.marker-UNC19970181_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-11_peak.marker-UNCJPD004792_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-12_peak.marker-ICR4497_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-13_peak.marker-UNCHS036964_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-18_peak.marker-UNCHS045344_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-19_peak.marker-UNCJPD007087_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-1_peak.marker-ICR010_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-1_peak.marker-ICR010_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-2_peak.marker-UNC4609660_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-B6_rs31740628_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-ICR1269_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-ICR5325_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-ICR5347_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-ICR5348_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00104971_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00105059_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00105203_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00107930_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00107980_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00108068_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00108114_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00109750_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00189245_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00517218_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00517674_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00517906_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00518418_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00518684_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00518911r_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00520122_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00524717_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00524828_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00525380_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00525709_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00527291_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00527587_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00529707_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00529707r_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00531601_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-JAX00532122_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4673471_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4681411_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4793677_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4799475_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4809586_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4820379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4875653_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4909830_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4912288_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4914130_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4923398_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4945186_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4947492_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4957168_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4957859_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4964062_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4979914_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4985064_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4990111_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC4991565_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5001723_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5042361_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5055259_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5076935_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5082757_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5173293_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5182782_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5193970_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5240484_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5256922_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5266664_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5266711_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5267813_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5274554_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5277061_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5282259_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5287977_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5301460_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5321559_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5322455_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5328596_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5350384_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5354724_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5375208_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5384072_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5400314_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5433945_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5435874_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5466669_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5517972_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5522257_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5523265_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5532424_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5553882_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5572051_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5582753_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5589260_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5595555_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5623239_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5639830_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5680234_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5682314_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5725356_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5727351_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5734420_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5743257_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5751567_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5752623_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5776974_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5778977_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5788507_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5792468_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5794598_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5795561_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5802298_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5806628_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5808246_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5817478_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5836999_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5841501_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5847927_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNC5966417_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008129_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008173_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008193_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008209_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008215_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008219_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008231_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008235_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008242_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008253_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008256_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008259_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008271_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008311_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008317_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008372_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008379_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008410_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008415_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008431_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008609_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008614_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008649_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008651_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008656_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008723_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008802_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008803_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008808_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008834_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008838_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008914_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008928_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008948_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008959_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008973_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS008987_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009001_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009025_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009034_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009087_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009109_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009142_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009207_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009216_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009224_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009306_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009316_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009364_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009377_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009382_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009387_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009395_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009413_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009428_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009463_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009503_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009532_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009541_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009560_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCHS009574_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCJPD001170_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCJPD001198_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCJPD001276_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCJPD001315_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCJPD001355_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCJPD001373_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-3_peak.marker-UNCJPD001382_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC6851205_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC8250659_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC8299912_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC8300499_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC8381981_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC8436434_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC8439633_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNC8530763_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS012948_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS012976_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS013118_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS013118_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS013118_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS013130_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS013139_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-4_peak.marker-UNCHS013304_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-5_peak.marker-JAX00590770_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-5_peak.marker-UNC10044126_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-7_peak.marker-ICR1830_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-7_peak.marker-UNC13170794_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-7_peak.marker-UNCHS019480_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.eoi_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-7_peak.marker-cr31snv87_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-8_peak.marker-JAX00667121_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-8_peak.marker-UNC15430711_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-9_peak.marker-UNC17203329_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-9_peak.marker-UNCHS024593_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-X_peak.marker-UNC30627130_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-X_peak.marker-UNCHS048313_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_gm_qtl_5.batches.csv
    Untracked:  data/ici.vs.eoi_gm_qtl_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_gm_qtl_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_gm_qtl_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_gm_qtl_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.eoi_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_geno.ratio.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_geno.ratio_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_geno.ratio_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_geno.ratio_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_geno.ratio_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_rz.age-additive.covariates_genes_chr-7_peak.marker-UNC13239362_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNC18343181_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNC18376338_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNC18376338_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNC18376338_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNC18382395_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-10_peak.marker-UNCHS029024_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-1_peak.marker-UNC228500_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-1_peak.marker-UNC228500_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-ICR2047_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-JAX00112499_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-JAX00219554_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-JAX00220631_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-JAX00529707_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4837069_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4956618_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC4957168_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5006948_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5266664_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5300878_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5360055_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5679155_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5808246_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC5945286_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNC6227106_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008595_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009067_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCHS009693_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCJPD001246_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-UNCJPD001341_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-3_peak.marker-sanger2623_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-4_peak.marker-UNCHS013125_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-4_peak.marker-UNCHS013125_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-6_peak.marker-UNCHS018170_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-6_peak.marker-UNCHS018231_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-JAX00292927_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNC18311938_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNC18343181_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNC18376338_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNC18376338_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNC18376338_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNC18382395_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNCHS028236_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNCHS028536_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-10_peak.marker-UNCHS029024_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-11_peak.marker-UNC19970181_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-12_peak.marker-ICR499_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-13_peak.marker-UNCHS036773_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-15_peak.marker-UNC26070435_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-17_peak.marker-UNCHS044241_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-17_peak.marker-UNCrs47191360_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-1_peak.marker-UNC228500_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-1_peak.marker-UNC228500_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-2_peak.marker-UNC4609527_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-ICR1338_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-ICR2047_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-JAX00106957_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-JAX00112499_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-JAX00219554_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-JAX00220631_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-JAX00514662_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-JAX00529707_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4813186_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4836550_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4837069_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4912039_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4924377_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4956618_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC4957168_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5006948_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5008656_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5083168_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5192582_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5213888_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5262472_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5266664_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5300878_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5360055_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5454839_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5645844_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5679155_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5808246_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC5945286_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNC6227106_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008182_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008286_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008487_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008511_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008595_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008613_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS008815_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS009067_lod.drop-1.5_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS009383_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCHS009693_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCJPD001246_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-UNCJPD001341_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-3_peak.marker-sanger2623_lod.drop-1.5_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-4_peak.marker-UNCHS013125_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-4_peak.marker-UNCHS013125_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-6_peak.marker-UNCHS018170_lod.drop-1.5_snpsqc_5.batches_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-6_peak.marker-UNCHS018231_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-7_peak.marker-UNCHS020066_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-9_peak.marker-UNC17203597_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_0.csv
    Untracked:  data/ici.vs.eoi_rz.age-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_52.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.geno.freq.removed.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.geno.freq.removed_sample.outliers.removed.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.probs.freq.removed.csv
    Untracked:  data/ici.vs.eoi_sample.genos_marker.freq_low.probs.freq.removed_sample.outliers.removed.csv
    Untracked:  data/ici.vs.eoi_scanone_5.batches.Rdata
    Untracked:  data/ici.vs.eoi_scanone_5.batches_mis.Rdata
    Untracked:  data/ici.vs.eoi_scanone_snpsqc_5.batches.Rdata
    Untracked:  data/ici.vs.eoi_scanone_snpsqc_5.batches_mis.Rdata
    Untracked:  data/ici.vs.eoi_scanone_snpsqc_dis_no-x_updated_5.batches.Rdata
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNC28655293_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-5_peak.marker-UNC10044126_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-5_peak.marker-UNC8675939_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-JAX00667121_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_blup_sub_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-14_peak.marker-UNC24056202_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-17_peak.marker-UNCJPD006614_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-18_peak.marker-UNC28655293_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-5_peak.marker-UNC10044126_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-5_peak.marker-UNC8675939_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-8_peak.marker-JAX00667121_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-8_peak.marker-UNC15524531_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_age.of.onset-no.covariates_genes_chr-X_peak.marker-UNCHS048314_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_bad.markers_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-10_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-10_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-10_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-10_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-10_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-11_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-11_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-11_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-11_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-11_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-12_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-12_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-12_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-12_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-12_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-13_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-13_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-13_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-13_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-13_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-14_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-14_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-14_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-14_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-14_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-15_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-15_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-15_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-15_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-15_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-16_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-16_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-16_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-16_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-16_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-17_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-17_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-17_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-17_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-17_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-18_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-18_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-18_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-18_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-18_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-19_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-19_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-19_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-19_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-19_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-1_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-1_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-1_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-1_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-1_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-2_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-2_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-2_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-2_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-2_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-3_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-3_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-3_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-3_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-3_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-4_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-4_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-4_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-4_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-4_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-5_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-6_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-6_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-6_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-6_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-6_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-7_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-7_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-7_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-7_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-7_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-8_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-8_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-8_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-8_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-8_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-9_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-9_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-9_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-9_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-9_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-X_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-X_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-X_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-X_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.full_chr-X_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-10_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-11_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-12_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-13_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-14_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-14_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-14_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-14_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-14_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-14_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-14_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-15_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-15_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-15_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-15_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-15_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-16_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-16_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-16_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-16_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-16_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-16_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-16_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-17_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-17_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-17_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-17_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-17_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-18_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-18_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-18_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-18_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-18_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-18_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-18_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-19_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-19_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-19_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-19_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-19_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-19_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-19_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-1_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-2_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-3_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-4_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-6_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-7_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-8_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_lod.drop-1.5_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-9_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-X_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-X_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-X_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-X_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-X_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-X_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup.qc_chr-X_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-10_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-10_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-10_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-10_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-10_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-11_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-11_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-11_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-11_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-11_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-12_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-12_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-12_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-12_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-12_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-13_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-13_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-13_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-13_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-13_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-14_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-14_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-14_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-14_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-14_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-15_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-15_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-15_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-16_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-16_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-16_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-16_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-16_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-17_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-17_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-17_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-18_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-18_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-18_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-18_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-18_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-19_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-19_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-19_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-19_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-19_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-1_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-1_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-1_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-1_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-1_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-2_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-2_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-2_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-2_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-2_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-3_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-3_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-3_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-3_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-3_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-4_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-4_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-4_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-4_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-4_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-5_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-5_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-5_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-5_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-5_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-6_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-6_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-6_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-6_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-6_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-7_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-7_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-7_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-7_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-7_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-8_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-8_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-8_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-8_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-8_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-9_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-9_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-9_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-9_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-9_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-X_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-X_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-X_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_chr-X_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_blup_chr-X_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-13_peak.marker-UNC22384241_lod.drop-1.5_snpsqc_snpsqc_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-19_peak.marker-UNC29893228_lod.drop-1.5_snpsqc_snpsqc_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-19_peak.marker-UNC29990033_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-19_peak.marker-UNCHS047192_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_peaks.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-8_peak.marker-UNCHS023353_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_peaks.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-8_peak.marker-UNCHS023353_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_blup_sub_chr-8_peak.marker-UNCHS023364_lod.drop-1.5_snpsqc_snpsqc_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_additive_snpsqc_dis_no-x_updated_5.batches_mis_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_additive_snpsqc_dis_no-x_updated_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_additive_snpsqc_snpsqc_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_interacting_snpsqc_dis_no-x_updated_5.batches_mis_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_interacting_snpsqc_dis_no-x_updated_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_interacting_snpsqc_snpsqc_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_sex_additive_snpsqc_dis_no-x_updated_5.batches_mis_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_sex_additive_snpsqc_dis_no-x_updated_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_sex_additive_snpsqc_snpsqc_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_sex_interacting_snpsqc_dis_no-x_updated_5.batches_mis_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_sex_interacting_snpsqc_dis_no-x_updated_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_fitqtl_peaks_sex_interacting_snpsqc_snpsqc_5.batches_peaks.txt
    Untracked:  data/ici.vs.pbs_genes_chr-13_peak.marker-UNC22384241_lod.drop-1.5_snpsqc_snpsqc_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_genes_chr-18_peak.marker-UNCHS045343_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_genes_chr-19_peak.marker-UNC29893228_lod.drop-1.5_snpsqc_snpsqc_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_genes_chr-19_peak.marker-UNC29990033_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_genes_chr-19_peak.marker-UNCHS047192_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_peaks.csv
    Untracked:  data/ici.vs.pbs_genes_chr-8_peak.marker-UNCHS023353_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis_peaks.csv
    Untracked:  data/ici.vs.pbs_genes_chr-8_peak.marker-UNCHS023353_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_genes_chr-8_peak.marker-UNCHS023364_lod.drop-1.5_snpsqc_snpsqc_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_mis_peaks.csv
    Untracked:  data/ici.vs.pbs_gm_qtl_snpsqc_dis_no-x_updated_5.batches_peaks.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_geno.ratio.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.geno.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.probs.freq.removed_geno.ratio.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.probs.freq.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.probs.freq.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches.csv
    Untracked:  data/ici.vs.pbs_marker.freq_low.probs.freq.removed_sample.outliers.removed_geno.ratio_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-JAX00153527_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-JAX00153527_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNCHS020443_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNCHS020443_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_blup_sub_chr-7_peak.marker-UNCHS020486_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-JAX00153527_lod.drop-1.5_5.batches.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-JAX00153527_lod.drop-1.5_snpsqc_5.batches.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-UNCHS020443_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-UNCHS020443_lod.drop-1.5_snpsqc_dis_no-x_updated_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_rz.age-additive.covariates_genes_chr-7_peak.marker-UNCHS020486_lod.drop-1.5_snpsqc_5.batches_mis.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.geno.freq.removed_sample.outliers.removed.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.probs.freq.removed.csv
    Untracked:  data/ici.vs.pbs_sample.genos_marker.freq_low.probs.freq.removed_sample.outliers.removed.csv
    Untracked:  data/ici.vs.pbs_scanone_5.batches.Rdata
    Untracked:  data/ici.vs.pbs_scanone_5.batches_mis.Rdata
    Untracked:  data/ici.vs.pbs_scanone_snpsqc_5.batches.Rdata
    Untracked:  data/ici.vs.pbs_scanone_snpsqc_5.batches_mis.Rdata
    Untracked:  data/ici.vs.pbs_scanone_snpsqc_dis_no-x_updated_5.batches.Rdata
    Untracked:  data/ici.vs.pbs_scanone_snpsqc_dis_no-x_updated_5.batches_mis.Rdata
    Untracked:  data/percent_missing_id_3.batches.RData
    Untracked:  data/percent_missing_id_4.batches.RData
    Untracked:  data/percent_missing_id_4.batches_bc.RData
    Untracked:  data/percent_missing_id_5.batches.RData
    Untracked:  data/percent_missing_marker_4.batches.RData
    Untracked:  data/percent_missing_marker_5.batches.RData
    Untracked:  data/pheno.csv
    Untracked:  data/pheno_BC312.csv
    Untracked:  data/physical_map.csv
    Untracked:  data/physical_map_BC312.csv
    Untracked:  data/qc_info_bad_sample_3.batches.RData
    Untracked:  data/qc_info_bad_sample_4.batches.RData
    Untracked:  data/qc_info_bad_sample_4.batches_bc.RData
    Untracked:  data/qc_info_bad_sample_5.batches.RData
    Untracked:  data/remaining.markers_geno.freq.xlsx
    Untracked:  data/sample_geno.csv
    Untracked:  data/sample_geno_AHB_BC312.csv
    Untracked:  data/sample_geno_bc.csv
    Untracked:  data/sample_geno_bc_BC312.csv
    Untracked:  data/serreze_probs.rds
    Untracked:  data/serreze_probs_BC312.rds
    Untracked:  data/serreze_probs_allqc.rds
    Untracked:  data/serreze_probs_allqc_5.batches.rds
    Untracked:  data/serreze_probs_allqc_5.batches_mis.rds
    Untracked:  data/summary.cg_3.batches.RData
    Untracked:  data/summary.cg_4.batches.RData
    Untracked:  data/summary.cg_4.batches_bc.RData
    Untracked:  data/summary.cg_5.batches.RData
    Untracked:  output/Percent_missing_genotype_data_5.batches.pdf
    Untracked:  output/Percent_missing_genotype_data_per_marker_5.batches.pdf
    Untracked:  output/Proportion_matching_genotypes_before_removal_of_bad_samples_5.batches.pdf
    Untracked:  output/genotype_error_marker_5.batches.pdf
    Untracked:  output/genotype_frequency_marker_5.batches.pdf

Unstaged changes:
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici.vs.eoi_snpsqc_dis_no-x_updated.Rmd
    Modified:   analysis/4.1.1_qtl.analysis_binary_ici.vs.pbs_snpsqc_dis_no-x_updated.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici-early.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.eoi_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches_mis.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches.Rmd
    Modified:   analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_dis_no-xk_5.batches_mis.Rmd
    Modified:   analysis/index_5.batches.Rmd
    Modified:   analysis/index_5.batches_additional.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

---

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.Rmd) and HTML (docs/4.1.2_qtl.analysis_cont_rz.age_ici.vs.pbs_snpsqc_pheno.corrected.cleaned_5.batches.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	a8c2d1a	Belinda Cornes	2022-04-13	additonal analysis - peaks and continuous variables
html	a8c2d1a	Belinda Cornes	2022-04-13	additonal analysis - peaks and continuous variables

---

Loading Data

load("data/gm_allqc_5.batches.RData")

#gm_allqc
gm=gm_allqc
gm

Object of class cross2 (crosstype "bc")

Total individuals              308
No. genotyped individuals      308
No. phenotyped individuals     308
No. with both geno & pheno     308

No. phenotypes                   1
No. covariates                   6
No. phenotype covariates         0

No. chromosomes                 20
Total markers                34537

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
2643 2629 1857 1890 1774 1941 1672 1627 1878 1176 1871 1300 1549 1578 1257  935 
  17   18   19    X 
 501  913 1014 4532 

#pr <- readRDS("data/serreze_probs_allqc.rds")
#pr <- readRDS("data/serreze_probs.rds")

##extracting animals with ici and pbs group status
miceinfo <- gm$covar[gm$covar$group == "PBS" | gm$covar$group == "ICI",]
table(miceinfo$group)

ICI PBS 
104  34 

mice.ids <- rownames(miceinfo)

gm <- gm[mice.ids]
gm

Object of class cross2 (crosstype "bc")

Total individuals              138
No. genotyped individuals      138
No. phenotyped individuals     138
No. with both geno & pheno     138

No. phenotypes                   1
No. covariates                   6
No. phenotype covariates         0

No. chromosomes                 20
Total markers                34537

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
2643 2629 1857 1890 1774 1941 1672 1627 1878 1176 1871 1300 1549 1578 1257  935 
  17   18   19    X 
 501  913 1014 4532 

table(gm$covar$group)

ICI PBS 
104  34 

gm.full <- gm

covars <- read_csv("data/covar_corrected.cleaned_ici.vs.pbs_5.batches.csv")
#removing any missing info
missing_ids <- covars[which(covars$"rz.age"==""),]$Mouse.ID
length(missing_ids)

[1] 0

missing_ids

character(0)

if(length(missing_ids) != 0){
gm <- gm[paste0("-",as.character(missing_ids)),]
gm
table(gm$covar$group)

#keeping only mouseids in covars
covars <- covars[gm$covar$id,]
table(covars$group)
}

##removing problmetic marker
gm <- drop_markers(gm, "UNCHS013106")

query_variants <- create_variant_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/cc_variants.sqlite")
query_genes <- create_gene_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/mouse_genes_mgi.sqlite")


##dropping monomorphic markers within the dataset

g <- do.call("cbind", gm$geno)
#g[1,1:ncol(g)]

gf_mar <- t(apply(g, 2, function(a) table(factor(a, 1:2))/sum(a != 0)))
#gn_mar <- t(apply(g, 2, function(a) table(factor(a, 1:2))))

gf_mar <- gf_mar[gf_mar[,2] != "NaN",]

count <- rowSums(gf_mar <=0.05)
low_freq_df <- merge(as.data.frame(gf_mar),as.data.frame(count), by="row.names",all=T)
low_freq_df[is.na(low_freq_df)] <- ''
low_freq_df <- low_freq_df[low_freq_df$count == 1,]
rownames(low_freq_df) <- low_freq_df$Row.names

low_freq <- find_markerpos(gm, rownames(low_freq_df))
low_freq$id <- rownames(low_freq)

nrow(low_freq)

[1] 7989

low_freq_bad <- merge(low_freq,low_freq_df, by="row.names",all=T)
names(low_freq_bad)[1] <- c("marker")

gf_mar <- gf_mar[gf_mar[,2] != "NaN",]
MAF <- apply(gf_mar, 1, function(x) min(x))
MAF <- as.data.frame(MAF)
MAF$index <- 1:nrow(gf_mar)
gf_mar_maf <- merge(gf_mar,as.data.frame(MAF), by="row.names")
gf_mar_maf <- gf_mar_maf[order(gf_mar_maf$index),]

gfmar <- NULL
gfmar$gfmar_mar_0 <- sum(gf_mar_maf$MAF==0)
gfmar$gfmar_mar_1 <- sum(gf_mar_maf$MAF< 0.01)
gfmar$gfmar_mar_5 <- sum(gf_mar_maf$MAF< 0.05)
gfmar$gfmar_mar_10 <- sum(gf_mar_maf$MAF< 0.10)
gfmar$gfmar_mar_15 <- sum(gf_mar_maf$MAF< 0.15)
gfmar$gfmar_mar_25 <- sum(gf_mar_maf$MAF< 0.25)
gfmar$gfmar_mar_50 <- sum(gf_mar_maf$MAF< 0.50)
gfmar$total_snps <- nrow(as.data.frame(gf_mar_maf))

gfmar <- t(as.data.frame(gfmar))
gfmar <- as.data.frame(gfmar)
gfmar$count <- gfmar$V1

gfmar[c(2)] %>%
  kable(escape = F,align = c("ccccccccc"),linesep ="\\hline") %>%
  kable_styling(full_width = F) %>%
  kable_styling("striped", full_width = F)  %>%
  row_spec(8 ,bold=T,color= "white",background = "black")

	count
gfmar_mar_0	3814
gfmar_mar_1	4068
gfmar_mar_5	7989
gfmar_mar_10	8527
gfmar_mar_15	8598
gfmar_mar_25	9313
gfmar_mar_50	33753
total_snps	34537

gm_qc <- drop_markers(gm, low_freq_bad$marker)
gm_qc <- drop_nullmarkers(gm_qc)
 
gm = gm_qc
gm

Object of class cross2 (crosstype "bc")

Total individuals              138
No. genotyped individuals      138
No. phenotyped individuals     138
No. with both geno & pheno     138

No. phenotypes                   1
No. covariates                   6
No. phenotype covariates         0

No. chromosomes                 20
Total markers                26548

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
2374 2374 1623 1691 1568 1703 1464 1468 1685  974 1671 1134 1377 1411  876  751 
  17   18   19    X 
 330  770  920  384 

markers <- marker_names(gm)
gmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_5.batches/genetic_map.csv")
pmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_5.batches/physical_map.csv")
#mapdf <- merge(gmapdf,pmapdf, by=c("marker","chr"), all=T)
#rownames(mapdf) <- mapdf$marker
#mapdf <- mapdf[markers,]
#names(mapdf) <- c('marker','chr','gmapdf','pmapdf')
#mapdfnd <- mapdf[!duplicated(mapdf[c(2:3)]),]

pr.qc <- calc_genoprob(gm)

Preparing necessary info

covars$rz.age <- as.numeric(covars$rz.age)
Xcovar <- get_x_covar(gm)
addcovar = model.matrix(~ICI.vs.PBS, data = covars)[,-1]
#addcovar.i = model.matrix(~ICI.vs.PBS, data = covars)[,-1]

K <- calc_kinship(pr.qc, type = "loco")
#heatmap(K[[1]])
K.overall <- calc_kinship(pr.qc, type = "overall")
#heatmap(K.overall)
kinship <- calc_kinship(pr.qc)
heatmap(kinship)

No additive covariates

Significance thresholds

operm <- scan1perm(pr.qc, covars["rz.age"], model="normal", n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	3.114571	3.038397
0.05	2.863383	2.860198
0.1	2.548632	2.627158

Genome-wide scan

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
#par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - ICI vs. PBS (no covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')

  }
}


print("with no kinship")

[1] “with no kinship”

outf <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal")

plot_lod(outf,gm$gmap)

print("with normal kinship")

[1] “with normal kinship”

outk <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", kinship=kinship)

plot_lod(outk,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

out <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", kinship=K)

plot_lod(out,gm$gmap)

print(paste0("number of samples in analysis = ", as.data.frame(attributes(out)$sample_size)[1,]))

[1] “number of samples in analysis = 138”

LOD peaks

Centimorgan (cM)

peaks<-find_peaks(out, gm$gmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)


if(nrow(peaks) >0){
peaks$marker <- find_marker(gm$gmap, chr=peaks$chr,pos=peaks$pos)
names(peaks)[2] <- c("phenotype")
peaks <- peaks[-1]

rownames(peaks) <- NULL
print(kable(peaks, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

#plot only peak chromosomes

plot_lod_chr<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. PBS (no covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()

  }
}


for(i in unique(peaks$chr)){
#for (i in 1:nrow(peaks)){
  #plot_lod_chr(out,gm$gmap, peaks$chr[i])
  plot_lod_chr(out,gm$gmap, i)
}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 2.8633832977256 [autosomes]/2.86019784918921 [x-chromosome]”

Megabase (MB)

peaks_mba<-find_peaks(out, gm$pmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)

if(nrow(peaks) >0){
peaks_mba$marker <- find_marker(gm$pmap, chr=peaks_mba$chr,pos=peaks_mba$pos)
names(peaks_mba)[2] <- c("phenotype")
peaks_mba <- peaks_mba[-1]

rownames(peaks_mba) <- NULL
print(kable(peaks_mba, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

  plot_lod_chr_mb<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. PBS (no covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

for(i in unique(peaks_mba$chr)){
#for (i in 1:nrow(peaks_mba)){
  #plot_lod_chr_mb(out,gm$pmap, peaks_mba$chr[i])
  plot_lod_chr_mb(out,gm$pmap,i)
}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 2.8633832977256 [autosomes]/2.86019784918921 [x-chromosome]”

QTL effects

For each peak LOD location we give a list of gene

if(nrow(peaks) >0){
for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE)
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(g, covars[,peaks$phenotype[i]], ylab=peaks$phenotype[i], sort=FALSE)
  title(main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," )"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  pr_sub <- pull_genoprobint(pr.qc, gm$gmap, chr, c(peaks$ci_lo[i], peaks$ci_hi[i]))
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  #coeff <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  #coeff_sub <- scan1coef(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  blup <- scan1blup(pr.qc[,chr], covars[peaks$phenotype[i]])
  blup_sub <- scan1blup(pr_sub[,chr], covars[peaks$phenotype[i]])

  write.csv(as.data.frame(blup_sub), paste0("data/ici.vs.pbs_",peaks$phenotype[i],"-no.covariates_blup_sub_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_snpsqc_5.batches.csv"), quote=F)

  #plot_coef(coeff, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1coeff; positions in cM] )")
  #     )

  #plot_coef(coeff_sub, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1coeff; positions in cM] ) ")
  #     )


  plot_coef(blup, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," [scan1blup; positions in cM] )")
       )

  plot_coef(blup_sub, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i],"; 1.5 LOD drop interval [scan1blup; positions in cM] )")
       )


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  write.csv(genesgss, file=paste0("data/ici.vs.pbs_",peaks$phenotype[i],"-no.covariates_genes_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_snpsqc_5.batches.csv"), quote=F)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  #genesgss <- 
  #table <- 
  #genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")] %>%
  #kable(escape = F,align = c("ccccccccccc")) %>%
  #kable_styling("striped", full_width = T) #%>% 
  #cat #%>%
  #column_spec(1, bold=TRUE)
#
  #print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], escape = F,align = c("ccccccccccc")))

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  #table
  

}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 2.8633832977256 [autosomes]/2.86019784918921 [x-chromosome]”

Additive covariates

Significance thresholds

operm <- scan1perm(pr.qc, covars["rz.age"], model="normal", addcovar=addcovar, n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	3.315078	2.794316
0.05	3.232738	2.581878
0.1	3.129563	2.304063

Genome-wide scan

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
#par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - ICI vs. PBS (with additive covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')

  }
}


print("with no kinship")

[1] “with no kinship”

outfa <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar)

plot_lod(outfa,gm$gmap)

print("with normal kinship")

[1] “with normal kinship”

outka <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, kinship=kinship)

plot_lod(outka,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

outa <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, kinship=K)

plot_lod(outa,gm$gmap)

out = outa

print(paste0("number of samples in analysis = ", as.data.frame(attributes(out)$sample_size)[1,]))

[1] “number of samples in analysis = 138”

LOD peaks

Centimorgan (cM)

peaks<-find_peaks(out, gm$gmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)

if(nrow(peaks) >0){
peaks$marker <- find_marker(gm$gmap, chr=peaks$chr,pos=peaks$pos)
names(peaks)[2] <- c("phenotype")
peaks <- peaks[-1]

rownames(peaks) <- NULL
print(kable(peaks, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

#plot only peak chromosomes

plot_lod_chr<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. PBS (with additive covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()

  }
}


for(i in unique(peaks$chr)){
#for (i in 1:nrow(peaks)){
  #plot_lod_chr(out,gm$gmap, peaks$chr[i])
  plot_lod_chr(out,gm$gmap, i)
}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

phenotype	chr	pos	lod	ci_lo	ci_hi	marker
rz.age	7	47.18333	3.251748	27.231	52.736	JAX00153527

Megabase (MB)

peaks_mba<-find_peaks(out, gm$pmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)

if(nrow(peaks) >0){
peaks_mba$marker <- find_marker(gm$pmap, chr=peaks_mba$chr,pos=peaks_mba$pos)
names(peaks_mba)[2] <- c("phenotype")
peaks_mba <- peaks_mba[-1]

rownames(peaks_mba) <- NULL
print(kable(peaks_mba, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

plot_lod_chr_mb<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. PBS (with additive covariates) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

for(i in unique(peaks_mba$chr)){
#for (i in 1:nrow(peaks_mba)){
  #plot_lod_chr_mb(out,gm$pmap, peaks_mba$chr[i])
  plot_lod_chr_mb(out,gm$pmap,i)
}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

phenotype	chr	pos	lod	ci_lo	ci_hi	marker
rz.age	7	82.3982	3.251748	40.38887	96.72037	JAX00153527

QTL effects

For each peak LOD location we give a list of gene

if(nrow(peaks) >0){
for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE)
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(g, covars[,peaks$phenotype[i]], ylab=peaks$phenotype[i], sort=FALSE)
  title(main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," )"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  pr_sub <- pull_genoprobint(pr.qc, gm$gmap, chr, c(peaks$ci_lo[i], peaks$ci_hi[i]))
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  #coeff <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  #coeff_sub <- scan1coef(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  blup <- scan1blup(pr.qc[,chr], covars[peaks$phenotype[i]])
  blup_sub <- scan1blup(pr_sub[,chr], covars[peaks$phenotype[i]])

  write.csv(as.data.frame(blup_sub), paste0("data/ici.vs.pbs_",peaks$phenotype[i],"-additive.covariates_blup_sub_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_snpsqc_5.batches.csv"), quote=F)

  #plot_coef(coeff, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1coeff; positions in cM] )")
  #     )

  #plot_coef(coeff_sub, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1coeff; positions in cM] ) ")
  #     )


  plot_coef(blup, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," [scan1blup; positions in cM] )")
       )

  plot_coef(blup_sub, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i],"; 1.5 LOD drop interval [scan1blup; positions in cM] )")
       )


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  write.csv(genesgss, file=paste0("data/ici.vs.pbs_",peaks$phenotype[i],"-additive.covariates_genes_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_snpsqc_5.batches.csv"), quote=F)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  #genesgss <- 
  #table <- 
  #genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")] %>%
  #kable(escape = F,align = c("ccccccccccc")) %>%
  #kable_styling("striped", full_width = T) #%>% 
  #cat #%>%
  #column_spec(1, bold=TRUE)
#
  #print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], escape = F,align = c("ccccccccccc")))

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  #table
  

}
} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
7	gene	40.37330	40.46924	negative	MGI_C57BL6J_5579513	Gm28807	ENSEMBL:ENSMUSG00000100650	MGI:5579513	lncRNA gene	predicted gene 28807
7	gene	40.47316	40.47489	positive	MGI_C57BL6J_1918088	4921507H08Rik	NA	NA	unclassified gene	RIKEN cDNA 4921507H08 gene
7	pseudogene	40.63940	40.63983	negative	MGI_C57BL6J_6324734	Gm50466	ENSEMBL:ENSMUSG00000118476	MGI:6324734	pseudogene	predicted gene, 50466
7	gene	40.67474	40.69127	positive	MGI_C57BL6J_1918279	4933402C06Rik	NCBI_Gene:71029,ENSEMBL:ENSMUSG00000102004	MGI:1918279	lncRNA gene	RIKEN cDNA 4933402C06 gene
7	gene	40.81848	40.90094	negative	MGI_C57BL6J_2443592	A230077H06Rik	NCBI_Gene:320210,ENSEMBL:ENSMUSG00000100600	MGI:2443592	lncRNA gene	RIKEN cDNA A230077H06 gene
7	gene	40.82062	40.82111	negative	MGI_C57BL6J_5753584	Gm45008	ENSEMBL:ENSMUSG00000108672	MGI:5753584	unclassified gene	predicted gene 45008
7	gene	40.87654	40.88578	positive	MGI_C57BL6J_5579013	Gm28307	ENSEMBL:ENSMUSG00000101643	MGI:5579013	lncRNA gene	predicted gene 28307
7	gene	40.87966	40.87974	positive	MGI_C57BL6J_5455561	Gm25784	ENSEMBL:ENSMUSG00000084473	MGI:5455561	snRNA gene	predicted gene, 25784
7	gene	40.89833	40.93059	positive	MGI_C57BL6J_1914525	Vstm2b	NCBI_Gene:58188,ENSEMBL:ENSMUSG00000039257	MGI:1914525	protein coding gene	V-set and transmembrane domain containing 2B
7	pseudogene	40.96992	40.97454	positive	MGI_C57BL6J_5579999	Gm29293	ENSEMBL:ENSMUSG00000099768	MGI:5579999	pseudogene	predicted gene 29293
7	gene	40.98754	40.99544	positive	MGI_C57BL6J_2685327	4930433I11Rik	NCBI_Gene:243944,ENSEMBL:ENSMUSG00000091692	MGI:2685327	protein coding gene	RIKEN cDNA 4930433I11 gene
7	pseudogene	40.98965	40.99038	positive	MGI_C57BL6J_5753747	Gm45171	ENSEMBL:ENSMUSG00000108397	MGI:5753747	pseudogene	predicted gene 45171
7	gene	41.01079	41.03262	negative	MGI_C57BL6J_5621882	Gm38997	NCBI_Gene:105242923,ENSEMBL:ENSMUSG00000108364	MGI:5621882	lncRNA gene	predicted gene, 38997
7	gene	41.03272	41.04530	positive	MGI_C57BL6J_3649090	Gm4884	NCBI_Gene:233164,ENSEMBL:ENSMUSG00000048312	MGI:3649090	protein coding gene	predicted gene 4884
7	pseudogene	41.04866	41.04885	negative	MGI_C57BL6J_5828831	Topbp1-ps2	ENSEMBL:ENSMUSG00000100732	MGI:5828831	pseudogene	topoisomerase (DNA) II binding protein 1, pseudogene 2
7	gene	41.05730	41.05860	negative	MGI_C57BL6J_5753748	Gm45172	ENSEMBL:ENSMUSG00000108661	MGI:5753748	unclassified gene	predicted gene 45172
7	gene	41.06062	41.08984	negative	MGI_C57BL6J_1924251	1700110I07Rik	NCBI_Gene:77001,ENSEMBL:ENSMUSG00000108490	MGI:1924251	lncRNA gene	RIKEN cDNA 1700110I07 gene
7	pseudogene	41.06756	41.06837	positive	MGI_C57BL6J_5578767	Gm28061	ENSEMBL:ENSMUSG00000102113	MGI:5578767	pseudogene	predicted gene 28061
7	gene	41.07762	41.07802	negative	MGI_C57BL6J_5753415	Gm44839	ENSEMBL:ENSMUSG00000108619	MGI:5753415	lncRNA gene	predicted gene 44839
7	pseudogene	41.08985	41.09964	positive	MGI_C57BL6J_3644761	Gm9239	NCBI_Gene:668555,ENSEMBL:ENSMUSG00000101195	MGI:3644761	pseudogene	predicted gene 9239
7	pseudogene	41.12122	41.12590	positive	MGI_C57BL6J_3647709	Gm6820	NCBI_Gene:627987,ENSEMBL:ENSMUSG00000101650	MGI:3647709	pseudogene	predicted gene 6820
7	gene	41.12865	41.28422	negative	MGI_C57BL6J_5753324	Gm44748	ENSEMBL:ENSMUSG00000108754	MGI:5753324	lncRNA gene	predicted gene 44748
7	pseudogene	41.15366	41.15929	positive	MGI_C57BL6J_3780298	Gm2128	NCBI_Gene:100039269,ENSEMBL:ENSMUSG00000078737	MGI:3780298	pseudogene	predicted gene 2128
7	gene	41.15384	41.29018	positive	MGI_C57BL6J_3648691	Gm5592	NCBI_Gene:434172,ENSEMBL:ENSMUSG00000072259	MGI:3648691	protein coding gene	predicted gene 5592
7	pseudogene	41.16378	41.16396	negative	MGI_C57BL6J_5578766	Gm28060	ENSEMBL:ENSMUSG00000100376	MGI:5578766	pseudogene	predicted gene 28060
7	pseudogene	41.18375	41.18709	positive	MGI_C57BL6J_5579373	Gm28667	ENSEMBL:ENSMUSG00000099657	MGI:5579373	pseudogene	predicted gene 28667
7	pseudogene	41.19111	41.19214	positive	MGI_C57BL6J_3645545	Gm5896	NCBI_Gene:545955,ENSEMBL:ENSMUSG00000099979	MGI:3645545	pseudogene	predicted gene 5896
7	gene	41.20319	41.21003	negative	MGI_C57BL6J_5593970	Gm34811	NCBI_Gene:102638189,ENSEMBL:ENSMUSG00000108395	MGI:5593970	lncRNA gene	predicted gene, 34811
7	pseudogene	41.21002	41.21964	positive	MGI_C57BL6J_3646160	Gm6866	NCBI_Gene:628304,ENSEMBL:ENSMUSG00000101196	MGI:3646160	pseudogene	predicted gene 6866
7	pseudogene	41.23338	41.25160	positive	MGI_C57BL6J_3648328	Gm9244	NCBI_Gene:668561,ENSEMBL:ENSMUSG00000049062	MGI:3648328	pseudogene	predicted gene 9244
7	gene	41.23429	41.23541	positive	MGI_C57BL6J_5804806	Gm45691	ENSEMBL:ENSMUSG00000108779	MGI:5804806	unclassified gene	predicted gene 45691
7	pseudogene	41.27360	41.27440	negative	MGI_C57BL6J_5753096	Gm44520	ENSEMBL:ENSMUSG00000108340	MGI:5753096	pseudogene	predicted gene 44520
7	pseudogene	41.29341	41.32052	negative	MGI_C57BL6J_5578765	Topbp1-ps1	NCBI_Gene:108167498,ENSEMBL:ENSMUSG00000099511	MGI:5578765	pseudogene	topoisomerase (DNA) II binding protein 1, pseudogene 1
7	pseudogene	41.30434	41.30768	positive	MGI_C57BL6J_3780276	Gm2108	ENSEMBL:ENSMUSG00000092031	MGI:3780276	pseudogene	predicted gene 2108
7	pseudogene	41.32539	41.32843	negative	MGI_C57BL6J_5009973	Gm17791	NCBI_Gene:100126099,ENSEMBL:ENSMUSG00000101449	MGI:5009973	pseudogene	predicted gene, 17791
7	pseudogene	41.33538	41.33887	positive	MGI_C57BL6J_3648324	Gm9246	NCBI_Gene:668565,ENSEMBL:ENSMUSG00000082080	MGI:3648324	pseudogene	predicted gene 9246
7	gene	41.37292	41.39338	negative	MGI_C57BL6J_2142079	AI987944	NCBI_Gene:233168,ENSEMBL:ENSMUSG00000056383	MGI:2142079	protein coding gene	expressed sequence AI987944
7	gene	41.39370	41.39745	positive	MGI_C57BL6J_4937929	Gm17102	NCBI_Gene:102638296,ENSEMBL:ENSMUSG00000091864	MGI:4937929	lncRNA gene	predicted gene 17102
7	gene	41.39594	41.44870	negative	MGI_C57BL6J_3703084	Vmn2r57	NCBI_Gene:269902,ENSEMBL:ENSMUSG00000066537	MGI:3703084	protein coding gene	vomeronasal 2, receptor 57
7	gene	41.39938	41.49942	negative	MGI_C57BL6J_5141914	Gm20449	ENSEMBL:ENSMUSG00000092592	MGI:5141914	protein coding gene	predicted gene 20449
7	pseudogene	41.46765	41.46787	negative	MGI_C57BL6J_5753097	Gm44521	ENSEMBL:ENSMUSG00000108312	MGI:5753097	pseudogene	predicted gene 44521
7	gene	41.47887	41.49989	negative	MGI_C57BL6J_2142212	AW146154	NCBI_Gene:101835,ENSEMBL:ENSMUSG00000074166	MGI:2142212	protein coding gene	expressed sequence AW146154
7	pseudogene	41.49035	41.49172	positive	MGI_C57BL6J_3641891	Gm15470	NCBI_Gene:100039375,ENSEMBL:ENSMUSG00000083500	MGI:3641891	pseudogene	predicted gene 15470
7	gene	41.54558	41.57366	negative	MGI_C57BL6J_3643456	Gm6871	NCBI_Gene:102642386,ENSEMBL:ENSMUSG00000090744	MGI:3643456	protein coding gene	predicted gene 6871
7	pseudogene	41.57328	41.57375	negative	MGI_C57BL6J_4938044	Gm17217	ENSEMBL:ENSMUSG00000090341	MGI:4938044	pseudogene	predicted gene 17217
7	pseudogene	41.59489	41.59673	positive	MGI_C57BL6J_5753654	Gm45078	ENSEMBL:ENSMUSG00000108482	MGI:5753654	pseudogene	predicted gene 45078
7	gene	41.59923	41.62853	positive	MGI_C57BL6J_1922662	2610021A01Rik	NCBI_Gene:668572,ENSEMBL:ENSMUSG00000091474	MGI:1922662	protein coding gene	RIKEN cDNA 2610021A01 gene
7	gene	41.63273	41.65153	positive	MGI_C57BL6J_1914857	Zfp788	NCBI_Gene:67607,ENSEMBL:ENSMUSG00000074165	MGI:1914857	protein coding gene	zinc finger protein 788
7	pseudogene	41.66639	41.66821	negative	MGI_C57BL6J_3645130	Gm9252	NCBI_Gene:668576,ENSEMBL:ENSMUSG00000091401	MGI:3645130	pseudogene	predicted gene 9252
7	pseudogene	41.66798	41.72719	positive	MGI_C57BL6J_1351350	Vmn2r-ps54	NCBI_Gene:75835,ENSEMBL:ENSMUSG00000074164	MGI:1351350	pseudogene	vomeronasal 2, receptor, pseudogene 54
7	pseudogene	41.66861	41.66931	negative	MGI_C57BL6J_3643699	Gm6872	NCBI_Gene:628372,ENSEMBL:ENSMUSG00000091004	MGI:3643699	pseudogene	predicted gene 6872
7	pseudogene	41.68225	41.68339	negative	MGI_C57BL6J_3645134	Cd9-ps	NCBI_Gene:668579,ENSEMBL:ENSMUSG00000092193	MGI:3645134	pseudogene	Cd9 antigen, pseudogene
7	pseudogene	41.72228	41.72260	positive	MGI_C57BL6J_3757982	Vmn2r-ps55	NCBI_Gene:100124555,ENSEMBL:ENSMUSG00000092538	MGI:3757982	pseudogene	vomeronasal 2, receptor, pseudogene 55
7	pseudogene	41.74471	41.77291	negative	MGI_C57BL6J_3757983	Vmn2r-ps56	NCBI_Gene:628403,ENSEMBL:ENSMUSG00000092451	MGI:3757983	pseudogene	vomeronasal 2, receptor, pseudogene 56
7	gene	41.83581	41.87271	negative	MGI_C57BL6J_3647877	Vmn2r58	NCBI_Gene:628422,ENSEMBL:ENSMUSG00000090383	MGI:3647877	protein coding gene	vomeronasal 2, receptor 58
7	pseudogene	41.93753	41.98093	negative	MGI_C57BL6J_1351346	Vmn2r-ps57	NCBI_Gene:110931,ENSEMBL:ENSMUSG00000092328	MGI:1351346	pseudogene	vomeronasal 2, receptor, pseudogene 57
7	gene	42.01128	42.05902	negative	MGI_C57BL6J_3643747	Vmn2r59	NCBI_Gene:628444,ENSEMBL:ENSMUSG00000092032	MGI:3643747	protein coding gene	vomeronasal 2, receptor 59
7	pseudogene	42.02072	42.02200	positive	MGI_C57BL6J_3648695	Hmgb1-ps7	NCBI_Gene:434174,ENSEMBL:ENSMUSG00000092281	MGI:3648695	pseudogene	high-mobility group high mobility group box 1, pseudogene 7
7	pseudogene	42.04786	42.05034	negative	MGI_C57BL6J_3647435	Gm7224	NCBI_Gene:637913,ENSEMBL:ENSMUSG00000083623	MGI:3647435	pseudogene	predicted gene 7224
7	pseudogene	42.10577	42.10730	negative	MGI_C57BL6J_3648694	Ccnb1-ps	NCBI_Gene:434175,ENSEMBL:ENSMUSG00000048574	MGI:3648694	pseudogene	cyclin B1, pseudogene
7	gene	42.10777	42.19621	positive	MGI_C57BL6J_3647050	Vmn2r60	NCBI_Gene:637898,ENSEMBL:ENSMUSG00000090619	MGI:3647050	protein coding gene	vomeronasal 2, receptor 60
7	pseudogene	42.12501	42.12622	negative	MGI_C57BL6J_3780479	Gm2308	NCBI_Gene:100039556,ENSEMBL:ENSMUSG00000092257	MGI:3780479	pseudogene	predicted gene 2308
7	pseudogene	42.25630	42.25642	negative	MGI_C57BL6J_5753095	Gm44519	ENSEMBL:ENSMUSG00000108562	MGI:5753095	pseudogene	predicted gene 44519
7	gene	42.26005	42.30076	positive	MGI_C57BL6J_1351347	Vmn2r61	NCBI_Gene:637873,ENSEMBL:ENSMUSG00000090967	MGI:1351347	protein coding gene	vomeronasal 2, receptor 61
7	pseudogene	42.30308	42.30334	positive	MGI_C57BL6J_3757988	Vmn2r-ps58	NCBI_Gene:100124556,ENSEMBL:ENSMUSG00000092370	MGI:3757988	pseudogene	vomeronasal 2, receptor, pseudogene 58
7	pseudogene	42.35370	42.35800	negative	MGI_C57BL6J_3648693	Gm5594	NCBI_Gene:100534301,ENSEMBL:ENSMUSG00000092411	MGI:3648693	pseudogene	predicted gene 5594
7	pseudogene	42.37846	42.37870	positive	MGI_C57BL6J_3757989	Vmn2r-ps59	NCBI_Gene:100124557,ENSEMBL:ENSMUSG00000092382	MGI:3757989	pseudogene	vomeronasal 2, receptor, pseudogene 59
7	pseudogene	42.42983	42.43072	negative	MGI_C57BL6J_3757993	Vmn2r-ps60	NCBI_Gene:628490,ENSEMBL:ENSMUSG00000070621	MGI:3757993	pseudogene	vomeronasal 2, receptor, pseudogene 60
7	gene	42.44546	42.44813	negative	MGI_C57BL6J_1918412	4933421I07Rik	NCBI_Gene:71162,ENSEMBL:ENSMUSG00000030463	MGI:1918412	protein coding gene	RIKEN cDNA 4933421I07 gene
7	pseudogene	42.46489	42.46537	negative	MGI_C57BL6J_3649086	Gm6887	ENSEMBL:ENSMUSG00000092301	MGI:3649086	pseudogene	predicted gene 6887
7	gene	42.47339	42.50575	negative	MGI_C57BL6J_3584269	Zfp141	NCBI_Gene:434178,ENSEMBL:ENSMUSG00000092416	MGI:3584269	protein coding gene	zinc finger protein 141
7	gene	42.48131	42.48234	negative	MGI_C57BL6J_1918854	9130413E14Rik	NA	NA	unclassified gene	RIKEN cDNA 9130413E14 gene
7	pseudogene	42.48877	42.48911	positive	MGI_C57BL6J_5011431	Gm19246	NCBI_Gene:100462739,ENSEMBL:ENSMUSG00000092505	MGI:5011431	pseudogene	predicted gene, 19246
7	gene	42.50583	42.51027	positive	MGI_C57BL6J_5594512	Gm35353	NCBI_Gene:102638902	MGI:5594512	lncRNA gene	predicted gene, 35353
7	pseudogene	42.50760	42.50933	negative	MGI_C57BL6J_5753099	Gm44523	ENSEMBL:ENSMUSG00000108491	MGI:5753099	pseudogene	predicted gene 44523
7	pseudogene	42.51823	42.52192	negative	MGI_C57BL6J_5825617	Gm45980	NCBI_Gene:108167418	MGI:5825617	pseudogene	predicted gene, 45980
7	gene	42.56141	42.57823	negative	MGI_C57BL6J_5753573	Gm44997	ENSEMBL:ENSMUSG00000108446	MGI:5753573	lncRNA gene	predicted gene 44997
7	gene	42.57754	42.64489	negative	MGI_C57BL6J_3036263	Zfp976	NCBI_Gene:208111,ENSEMBL:ENSMUSG00000074158	MGI:3036263	protein coding gene	zinc finger protein 976
7	gene	42.57840	42.57973	negative	MGI_C57BL6J_5434383	Gm21028	NCBI_Gene:100534316,ENSEMBL:ENSMUSG00000094462	MGI:5434383	protein coding gene	predicted gene, 21028
7	gene	42.57978	42.59255	negative	MGI_C57BL6J_3645327	Zfp977	ENSEMBL:ENSMUSG00000092335	MGI:3645327	protein coding gene	zinc finger protein 977
7	gene	42.60516	42.60527	negative	MGI_C57BL6J_5454715	Gm24938	ENSEMBL:ENSMUSG00000076180	MGI:5454715	miRNA gene	predicted gene, 24938
7	gene	42.66011	42.69274	negative	MGI_C57BL6J_3648690	Zfp975	NCBI_Gene:434179,ENSEMBL:ENSMUSG00000069727	MGI:3648690	protein coding gene	zinc finger protein 975
7	gene	42.69286	42.69779	positive	MGI_C57BL6J_5621883	Gm38998	NCBI_Gene:105242926	MGI:5621883	lncRNA gene	predicted gene, 38998
7	gene	42.70504	42.72702	negative	MGI_C57BL6J_4937894	Gm17067	NCBI_Gene:101056115,ENSEMBL:ENSMUSG00000091594	MGI:4937894	protein coding gene	predicted gene 17067
7	pseudogene	42.73441	42.73492	positive	MGI_C57BL6J_5010313	Gm18128	NCBI_Gene:100416478,ENSEMBL:ENSMUSG00000092554	MGI:5010313	pseudogene	predicted gene, 18128
7	pseudogene	42.75037	42.75256	positive	MGI_C57BL6J_3644564	Gm6004	NCBI_Gene:546965,ENSEMBL:ENSMUSG00000092238	MGI:3644564	pseudogene	predicted gene 6004
7	gene	42.76405	42.79353	negative	MGI_C57BL6J_3757994	Vmn2r62	NCBI_Gene:546964,ENSEMBL:ENSMUSG00000091926	MGI:3757994	protein coding gene	vomeronasal 2, receptor 62
7	gene	42.81683	42.86723	negative	MGI_C57BL6J_3780549	Gm2381	NCBI_Gene:100039706,ENSEMBL:ENSMUSG00000092225	MGI:3780549	protein coding gene	predicted gene 2381
7	pseudogene	42.87856	42.88067	positive	MGI_C57BL6J_3648273	Gm7211	NCBI_Gene:637572,ENSEMBL:ENSMUSG00000092191	MGI:3648273	pseudogene	predicted gene 7211
7	pseudogene	42.88599	42.89256	positive	MGI_C57BL6J_5825661	Gm46024	NCBI_Gene:108167508	MGI:5825661	pseudogene	predicted gene, 46024
7	gene	42.89671	42.93382	negative	MGI_C57BL6J_3647107	Vmn2r63	NCBI_Gene:435975,ENSEMBL:ENSMUSG00000090751	MGI:3647107	protein coding gene	vomeronasal 2, receptor 63
7	pseudogene	42.95172	42.95221	positive	MGI_C57BL6J_3643305	Gm9266	NCBI_Gene:668606,ENSEMBL:ENSMUSG00000080892	MGI:3643305	pseudogene	predicted gene 9266
7	pseudogene	42.95352	42.95441	negative	MGI_C57BL6J_3648888	Gm9294	NCBI_Gene:668668,ENSEMBL:ENSMUSG00000044609	MGI:3648888	pseudogene	predicted pseudogene 9294
7	gene	42.95835	42.95846	positive	MGI_C57BL6J_5453033	Gm23256	ENSEMBL:ENSMUSG00000076190	MGI:5453033	miRNA gene	predicted gene, 23256
7	gene	43.01877	43.04811	positive	MGI_C57BL6J_3646456	Vmn2r126	NCBI_Gene:668612,ENSEMBL:ENSMUSG00000091528	MGI:3646456	protein coding gene	vomeronasal 2, receptor 126
7	pseudogene	43.06067	43.06101	negative	MGI_C57BL6J_5753114	Gm44538	ENSEMBL:ENSMUSG00000108666	MGI:5753114	pseudogene	predicted gene 44538
7	gene	43.07804	43.09938	positive	MGI_C57BL6J_5009932	Gm17768	NCBI_Gene:100045125,ENSEMBL:ENSMUSG00000107181	MGI:5009932	lncRNA gene	predicted gene, 17768
7	pseudogene	43.08210	43.08266	negative	MGI_C57BL6J_3648821	Rpl18a-ps4	NCBI_Gene:385199,ENSEMBL:ENSMUSG00000108492	MGI:3648821	pseudogene	ribosomal protein L18A, pseudogene 4
7	gene	43.09972	43.09984	positive	MGI_C57BL6J_3642306	Gm10351	ENSEMBL:ENSMUSG00000071952	MGI:3642306	protein coding gene	predicted gene 10351
7	gene	43.11423	43.19211	positive	MGI_C57BL6J_3642994	Zfp936	NCBI_Gene:668620,ENSEMBL:ENSMUSG00000064194	MGI:3642994	protein coding gene	zinc finger protein 936
7	gene	43.15316	43.15541	positive	MGI_C57BL6J_5825648	Gm46011	NCBI_Gene:108167482	MGI:5825648	protein coding gene	predicted gene, 46011
7	pseudogene	43.15581	43.15665	positive	MGI_C57BL6J_5010393	Gm18208	NCBI_Gene:100416704	MGI:5010393	pseudogene	predicted gene, 18208
7	gene	43.20435	43.20446	positive	MGI_C57BL6J_5452484	Gm22707	ENSEMBL:ENSMUSG00000077022	MGI:5452484	miRNA gene	predicted gene, 22707
7	gene	43.21404	43.22725	positive	MGI_C57BL6J_3796554	EU599041	NCBI_Gene:100170401,ENSEMBL:ENSMUSG00000074887	MGI:3796554	lncRNA gene	expressed sequence EU599041
7	gene	43.25374	43.26564	positive	MGI_C57BL6J_5594747	Gm35588	NCBI_Gene:102639229	MGI:5594747	protein coding gene	predicted gene, 35588
7	gene	43.29620	43.31331	negative	MGI_C57BL6J_1917180	Zfp715	NCBI_Gene:69930,ENSEMBL:ENSMUSG00000012640	MGI:1917180	protein coding gene	zinc finger protein 715
7	pseudogene	43.34455	43.34479	positive	MGI_C57BL6J_5753115	Gm44539	ENSEMBL:ENSMUSG00000108300	MGI:5753115	pseudogene	predicted gene 44539
7	gene	43.35134	43.35953	positive	MGI_C57BL6J_2681107	Siglecf	NCBI_Gene:233186,ENSEMBL:ENSMUSG00000039013	MGI:2681107	protein coding gene	sialic acid binding Ig-like lectin F
7	pseudogene	43.38768	43.38794	negative	MGI_C57BL6J_3642777	Gm10298	ENSEMBL:ENSMUSG00000070606	MGI:3642777	pseudogene	predicted gene 10298
7	pseudogene	43.39453	43.39526	positive	MGI_C57BL6J_5753116	Gm44540	ENSEMBL:ENSMUSG00000108775	MGI:5753116	pseudogene	predicted gene 44540
7	gene	43.40819	43.41836	positive	MGI_C57BL6J_2443630	Siglecg	NCBI_Gene:243958,ENSEMBL:ENSMUSG00000030468	MGI:2443630	protein coding gene	sialic acid binding Ig-like lectin G
7	gene	43.42764	43.42984	positive	MGI_C57BL6J_5621884	Gm38999	NCBI_Gene:105242927	MGI:5621884	protein coding gene	predicted gene, 38999
7	gene	43.42767	43.43600	positive	MGI_C57BL6J_104698	Lim2	NCBI_Gene:233187,ENSEMBL:ENSMUSG00000093639	MGI:104698	protein coding gene	lens intrinsic membrane protein 2
7	gene	43.43707	43.43825	positive	MGI_C57BL6J_1931250	Nkg7	NCBI_Gene:72310,ENSEMBL:ENSMUSG00000004612	MGI:1931250	protein coding gene	natural killer cell group 7 sequence
7	gene	43.43919	43.44348	positive	MGI_C57BL6J_1921526	Cldnd2	NCBI_Gene:74276,ENSEMBL:ENSMUSG00000038973	MGI:1921526	protein coding gene	claudin domain containing 2
7	gene	43.44407	43.45780	positive	MGI_C57BL6J_106098	Etfb	NCBI_Gene:110826,ENSEMBL:ENSMUSG00000004610	MGI:106098	protein coding gene	electron transferring flavoprotein, beta polypeptide
7	gene	43.44413	43.46359	positive	MGI_C57BL6J_5753809	Etfbl	ENSEMBL:ENSMUSG00000107482	MGI:5753809	protein coding gene	electron transferring flavoprotein, beta polypeptide like
7	gene	43.44807	43.44855	positive	MGI_C57BL6J_5753392	Gm44816	ENSEMBL:ENSMUSG00000108618	MGI:5753392	unclassified gene	predicted gene 44816
7	gene	43.45750	43.45757	positive	MGI_C57BL6J_5531067	Mir7051	miRBase:MI0022900,NCBI_Gene:102465636,ENSEMBL:ENSMUSG00000099210	MGI:5531067	miRNA gene	microRNA 7051
7	gene	43.46150	43.46417	negative	MGI_C57BL6J_5621885	Gm39000	NCBI_Gene:105242928	MGI:5621885	lncRNA gene	predicted gene, 39000
7	gene	43.46306	43.47202	positive	MGI_C57BL6J_1922940	Vsig10l	NCBI_Gene:75690,ENSEMBL:ENSMUSG00000070604	MGI:1922940	protein coding gene	V-set and immunoglobulin domain containing 10 like
7	gene	43.47290	43.49007	negative	MGI_C57BL6J_2686277	Iglon5	NCBI_Gene:210094,ENSEMBL:ENSMUSG00000013367	MGI:2686277	protein coding gene	IgLON family member 5
7	gene	43.49204	43.50597	negative	MGI_C57BL6J_1921304	4931406B18Rik	NCBI_Gene:74054,ENSEMBL:ENSMUSG00000013353	MGI:1921304	protein coding gene	RIKEN cDNA 4931406B18 gene
7	pseudogene	43.50692	43.50753	positive	MGI_C57BL6J_3646238	Gm9278	NCBI_Gene:668630,ENSEMBL:ENSMUSG00000108438	MGI:3646238	pseudogene	predicted gene 9278
7	gene	43.51116	43.51908	negative	MGI_C57BL6J_3780678	Gm2511	NCBI_Gene:100039946,ENSEMBL:ENSMUSG00000108695	MGI:3780678	lncRNA gene	predicted gene 2511
7	gene	43.52422	43.54443	negative	MGI_C57BL6J_99440	Cd33	NCBI_Gene:12489,ENSEMBL:ENSMUSG00000004609	MGI:99440	protein coding gene	CD33 antigen
7	gene	43.56132	43.56168	positive	MGI_C57BL6J_5753394	Gm44818	ENSEMBL:ENSMUSG00000108411	MGI:5753394	lncRNA gene	predicted gene 44818
7	gene	43.56220	43.57614	positive	MGI_C57BL6J_2652821	Zfp658	NCBI_Gene:210104,ENSEMBL:ENSMUSG00000056592	MGI:2652821	protein coding gene	zinc finger protein 658
7	gene	43.57955	43.59371	positive	MGI_C57BL6J_2444708	Zfp719	NCBI_Gene:210105,ENSEMBL:ENSMUSG00000030469	MGI:2444708	protein coding gene	zinc finger protein 719
7	gene	43.60690	43.61910	positive	MGI_C57BL6J_1921650	Zfp819	NCBI_Gene:74400,ENSEMBL:ENSMUSG00000055102	MGI:1921650	protein coding gene	zinc finger protein 819
7	gene	43.63467	43.64930	positive	MGI_C57BL6J_1919681	Ceacam18	NCBI_Gene:72431,ENSEMBL:ENSMUSG00000030472	MGI:1919681	protein coding gene	carcinoembryonic antigen-related cell adhesion molecule 18
7	gene	43.65107	43.66018	negative	MGI_C57BL6J_1932475	Siglece	NCBI_Gene:83382,ENSEMBL:ENSMUSG00000030474	MGI:1932475	protein coding gene	sialic acid binding Ig-like lectin E
7	gene	43.66926	43.67188	negative	MGI_C57BL6J_5595705	Gm36546	NCBI_Gene:102640502,ENSEMBL:ENSMUSG00000108783	MGI:5595705	lncRNA gene	predicted gene, 36546
7	gene	43.67198	43.67830	positive	MGI_C57BL6J_2385277	Ctu1	NCBI_Gene:233189,ENSEMBL:ENSMUSG00000038888	MGI:2385277	protein coding gene	cytosolic thiouridylase subunit 1
7	gene	43.68088	43.69554	positive	MGI_C57BL6J_2447564	Klk14	NCBI_Gene:317653,ENSEMBL:ENSMUSG00000044737	MGI:2447564	protein coding gene	kallikrein related-peptidase 14
7	gene	43.69264	43.69310	positive	MGI_C57BL6J_5753393	Gm44817	ENSEMBL:ENSMUSG00000108734	MGI:5753393	unclassified gene	predicted gene 44817
7	gene	43.69521	43.79796	negative	MGI_C57BL6J_1916779	2310002F09Rik	NCBI_Gene:100504720,ENSEMBL:ENSMUSG00000097178	MGI:1916779	lncRNA gene	RIKEN cDNA 2310002F09 gene
7	gene	43.71257	43.72786	positive	MGI_C57BL6J_3615275	Klk13	NCBI_Gene:626834,ENSEMBL:ENSMUSG00000054046	MGI:3615275	protein coding gene	kallikrein related-peptidase 13
7	gene	43.71599	43.71642	positive	MGI_C57BL6J_5753390	Gm44814	ENSEMBL:ENSMUSG00000108588	MGI:5753390	unclassified gene	predicted gene 44814
7	gene	43.76866	43.77470	positive	MGI_C57BL6J_1916761	Klk12	NCBI_Gene:69511,ENSEMBL:ENSMUSG00000044430	MGI:1916761	protein coding gene	kallikrein related-peptidase 12
7	gene	43.77460	43.77926	positive	MGI_C57BL6J_1929977	Klk11	NCBI_Gene:56538,ENSEMBL:ENSMUSG00000067616	MGI:1929977	protein coding gene	kallikrein related-peptidase 11
7	gene	43.78104	43.78541	positive	MGI_C57BL6J_1916790	Klk10	NCBI_Gene:69540,ENSEMBL:ENSMUSG00000030693	MGI:1916790	protein coding gene	kallikrein related-peptidase 10
7	gene	43.79159	43.79676	positive	MGI_C57BL6J_1921082	Klk9	NCBI_Gene:101533,ENSEMBL:ENSMUSG00000047884	MGI:1921082	protein coding gene	kallikrein related-peptidase 9
7	gene	43.79758	43.80383	positive	MGI_C57BL6J_1343327	Klk8	NCBI_Gene:259277,ENSEMBL:ENSMUSG00000064023	MGI:1343327	protein coding gene	kallikrein related-peptidase 8
7	gene	43.81129	43.81639	positive	MGI_C57BL6J_1346336	Klk7	NCBI_Gene:23993,ENSEMBL:ENSMUSG00000030713	MGI:1346336	protein coding gene	kallikrein related-peptidase 7 (chymotryptic, stratum corneum)
7	gene	43.82450	43.83203	positive	MGI_C57BL6J_1343166	Klk6	NCBI_Gene:19144,ENSEMBL:ENSMUSG00000050063	MGI:1343166	protein coding gene	kallikrein related-peptidase 6
7	gene	43.83416	43.85118	positive	MGI_C57BL6J_1915918	Klk5	NCBI_Gene:68668,ENSEMBL:ENSMUSG00000074155	MGI:1915918	protein coding gene	kallikrein related-peptidase 5
7	gene	43.85609	43.85741	negative	MGI_C57BL6J_5753283	Gm44707	ENSEMBL:ENSMUSG00000108781	MGI:5753283	lncRNA gene	predicted gene 44707
7	pseudogene	43.86388	43.86419	positive	MGI_C57BL6J_5753749	Gm45173	ENSEMBL:ENSMUSG00000108527	MGI:5753749	pseudogene	predicted gene 45173
7	gene	43.88116	43.88580	positive	MGI_C57BL6J_1861379	Klk4	NCBI_Gene:56640,ENSEMBL:ENSMUSG00000006948	MGI:1861379	protein coding gene	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)
7	pseudogene	43.91517	43.92187	positive	MGI_C57BL6J_892028	Klk2-ps	NCBI_Gene:16603,ENSEMBL:ENSMUSG00000108444	MGI:892028	pseudogene	kallikrein-related peptidase 2, pseudogene
7	gene	43.92941	43.93985	positive	MGI_C57BL6J_2447533	Klk15	NCBI_Gene:317652,ENSEMBL:ENSMUSG00000055193	MGI:2447533	protein coding gene	kallikrein related-peptidase 15
7	gene	43.93806	43.97657	negative	MGI_C57BL6J_5753332	Gm44756	ENSEMBL:ENSMUSG00000108432	MGI:5753332	lncRNA gene	predicted gene 44756
7	pseudogene	43.94266	43.94593	positive	MGI_C57BL6J_892027	Klk1b7-ps	NCBI_Gene:16604,ENSEMBL:ENSMUSG00000060161	MGI:892027	pseudogene	kallikrein 1-related peptidase b7, pseudogene
7	pseudogene	43.94625	43.94889	negative	MGI_C57BL6J_5753521	Gm44945	ENSEMBL:ENSMUSG00000108323	MGI:5753521	pseudogene	predicted gene 44945
7	gene	43.95066	43.95494	positive	MGI_C57BL6J_892018	Klk1b8	NCBI_Gene:16624,ENSEMBL:ENSMUSG00000063089	MGI:892018	protein coding gene	kallikrein 1-related peptidase b8
7	pseudogene	43.95878	43.96300	positive	MGI_C57BL6J_892029	Klk1b2-ps	NCBI_Gene:16602,ENSEMBL:ENSMUSG00000108651	MGI:892029	pseudogene	kallikrein 1-related peptidase b2, pseudogene
7	gene	43.96675	43.97132	positive	MGI_C57BL6J_892019	Klk1b1	NCBI_Gene:16623,ENSEMBL:ENSMUSG00000063133	MGI:892019	protein coding gene	kallikrein 1-related peptidase b1
7	pseudogene	43.97225	43.97429	negative	MGI_C57BL6J_5753774	Gm45198	ENSEMBL:ENSMUSG00000108746	MGI:5753774	pseudogene	predicted gene 45198
7	gene	43.97606	43.98038	positive	MGI_C57BL6J_95293	Klk1b9	NCBI_Gene:13648,ENSEMBL:ENSMUSG00000059042	MGI:95293	protein coding gene	kallikrein 1-related peptidase b9
7	pseudogene	43.98073	43.99413	negative	MGI_C57BL6J_5753711	Gm45135	ENSEMBL:ENSMUSG00000108730	MGI:5753711	pseudogene	predicted gene 45135
7	pseudogene	43.98777	43.99209	positive	MGI_C57BL6J_892026	Klk1b10-ps	NCBI_Gene:16605,ENSEMBL:ENSMUSG00000108602	MGI:892026	pseudogene	kallikrein 1-related peptidase b10, pseudogene
7	gene	43.99588	43.99988	positive	MGI_C57BL6J_892023	Klk1b11	NCBI_Gene:16613,ENSEMBL:ENSMUSG00000044485	MGI:892023	protein coding gene	kallikrein 1-related peptidase b11
7	pseudogene	44.00080	44.00286	negative	MGI_C57BL6J_5753771	Gm45195	ENSEMBL:ENSMUSG00000108794	MGI:5753771	pseudogene	predicted gene 45195
7	gene	44.00462	44.10658	positive	MGI_C57BL6J_892022	Klk1b21	NCBI_Gene:16616,ENSEMBL:ENSMUSG00000066516	MGI:892022	protein coding gene	kallikrein 1-related peptidase b21
7	pseudogene	44.00464	44.00893	positive	MGI_C57BL6J_892025	Klk1b12-ps	NCBI_Gene:110971,ENSEMBL:ENSMUSG00000108539	MGI:892025	pseudogene	kallikrein 1-related peptidase b12, pseudogene
7	gene	44.01217	44.01697	positive	MGI_C57BL6J_891981	Klk1b26	NCBI_Gene:16618,ENSEMBL:ENSMUSG00000053719	MGI:891981	protein coding gene	kallikrein 1-related petidase b26
7	gene	44.01270	44.01697	positive	MGI_C57BL6J_95292	Egfbp2	NA	NA	protein coding gene	epidermal growth factor binding protein type B
7	pseudogene	44.02082	44.02158	positive	MGI_C57BL6J_892024	Klk1b18-ps	NCBI_Gene:16609,ENSEMBL:ENSMUSG00000108759	MGI:892024	pseudogene	kallikrein 1-related peptidase b18, pseudogene
7	pseudogene	44.02794	44.02915	positive	MGI_C57BL6J_891986	Klk1b28-ps	NCBI_Gene:108165,ENSEMBL:ENSMUSG00000108339	MGI:891986	pseudogene	kallikrein 1-related peptidase b28, pseudogene
7	pseudogene	44.04127	44.04353	negative	MGI_C57BL6J_5753772	Gm45196	ENSEMBL:ENSMUSG00000108328	MGI:5753772	pseudogene	predicted gene 45196
7	pseudogene	44.04516	44.04848	positive	MGI_C57BL6J_891985	Klk1b19-ps	NCBI_Gene:668647,ENSEMBL:ENSMUSG00000108440	MGI:891985	pseudogene	kallikrein 1-related peptidase b19, pseudogene
7	gene	44.05229	44.05671	positive	MGI_C57BL6J_891980	Klk1b27	NCBI_Gene:16619,ENSEMBL:ENSMUSG00000063177	MGI:891980	protein coding gene	kallikrein 1-related peptidase b27
7	pseudogene	44.06985	44.07001	negative	MGI_C57BL6J_5753773	Gm45197	ENSEMBL:ENSMUSG00000108538	MGI:5753773	pseudogene	predicted gene 45197
7	pseudogene	44.07180	44.07605	positive	MGI_C57BL6J_891983	Klk1b14-ps	NCBI_Gene:16614,ENSEMBL:ENSMUSG00000108400	MGI:891983	pseudogene	kallikrein 1-related peptidase b14, pseudogene
7	pseudogene	44.07675	44.07905	negative	MGI_C57BL6J_5753602	Gm45026	ENSEMBL:ENSMUSG00000108498	MGI:5753602	pseudogene	predicted gene 45026
7	pseudogene	44.09616	44.09855	positive	MGI_C57BL6J_891987	Klk1b15-ps	NCBI_Gene:16607,ENSEMBL:ENSMUSG00000108406	MGI:891987	pseudogene	kallikrein 1-related peptidase b15, pseudogene
7	pseudogene	44.09936	44.09951	negative	MGI_C57BL6J_5753701	Gm45125	ENSEMBL:ENSMUSG00000108517	MGI:5753701	pseudogene	predicted gene 45125
7	pseudogene	44.10710	44.10968	negative	MGI_C57BL6J_5753703	Gm45127	ENSEMBL:ENSMUSG00000108301	MGI:5753703	pseudogene	predicted gene 45127
7	gene	44.11267	44.11692	positive	MGI_C57BL6J_95291	Klk1b22	NCBI_Gene:13646,ENSEMBL:ENSMUSG00000060177	MGI:95291	protein coding gene	kallikrein 1-related peptidase b22
7	pseudogene	44.11749	44.11980	negative	MGI_C57BL6J_5753702	Gm45126	ENSEMBL:ENSMUSG00000108796	MGI:5753702	pseudogene	predicted gene 45126
7	gene	44.12225	44.14161	positive	MGI_C57BL6J_891982	Klk1b16	NCBI_Gene:16615,ENSEMBL:ENSMUSG00000038968	MGI:891982	protein coding gene	kallikrein 1-related peptidase b16
7	pseudogene	44.12326	44.13554	negative	MGI_C57BL6J_5753698	Gm45122	ENSEMBL:ENSMUSG00000108403	MGI:5753698	pseudogene	predicted gene 45122
7	pseudogene	44.13264	44.13347	positive	MGI_C57BL6J_891984	Klk1b23-ps	NCBI_Gene:108164,ENSEMBL:ENSMUSG00000108797	MGI:891984	pseudogene	kallikrein 1-related peptidase b23, pseudogene
7	gene	44.15684	44.15779	negative	MGI_C57BL6J_5753712	Gm45136	ENSEMBL:ENSMUSG00000108774	MGI:5753712	unclassified gene	predicted gene 45136
7	gene	44.18823	44.19246	positive	MGI_C57BL6J_892021	Klk1b24	NCBI_Gene:16617,ENSEMBL:ENSMUSG00000063713	MGI:892021	protein coding gene	kallikrein 1-related peptidase b24
7	pseudogene	44.19319	44.19563	negative	MGI_C57BL6J_5753355	Gm44779	ENSEMBL:ENSMUSG00000108727	MGI:5753355	pseudogene	predicted gene 44779
7	gene	44.19819	44.20235	positive	MGI_C57BL6J_97322	Klk1b3	NCBI_Gene:18050,ENSEMBL:ENSMUSG00000066515	MGI:97322	protein coding gene	kallikrein 1-related peptidase b3
7	pseudogene	44.20270	44.20429	negative	MGI_C57BL6J_5753181	Gm44605	ENSEMBL:ENSMUSG00000108459	MGI:5753181	pseudogene	predicted gene 44605
7	gene	44.20743	44.21175	positive	MGI_C57BL6J_97320	Klk1b4	NCBI_Gene:18048,ENSEMBL:ENSMUSG00000066513	MGI:97320	protein coding gene	kallikrein 1-related pepidase b4
7	pseudogene	44.21207	44.21472	negative	MGI_C57BL6J_5753710	Gm45134	ENSEMBL:ENSMUSG00000108679	MGI:5753710	pseudogene	predicted gene 45134
7	gene	44.21594	44.22070	positive	MGI_C57BL6J_892020	Klk1b5	NCBI_Gene:16622,ENSEMBL:ENSMUSG00000066512	MGI:892020	protein coding gene	kallikrein 1-related peptidase b5
7	pseudogene	44.22101	44.24666	negative	MGI_C57BL6J_3647742	Gm10109	NCBI_Gene:638411,ENSEMBL:ENSMUSG00000062073	MGI:3647742	pseudogene	predicted gene 10109
7	gene	44.22536	44.22962	positive	MGI_C57BL6J_102850	Klk1	NCBI_Gene:16612,ENSEMBL:ENSMUSG00000063903	MGI:102850	protein coding gene	kallikrein 1
7	gene	44.22981	44.24670	negative	MGI_C57BL6J_1917254	1700028J19Rik	NCBI_Gene:70004,ENSEMBL:ENSMUSG00000038782	MGI:1917254	lncRNA gene	RIKEN cDNA 1700028J19 gene
7	gene	44.23618	44.24431	positive	MGI_C57BL6J_5596023	Gm36864	NCBI_Gene:102640913,ENSEMBL:ENSMUSG00000108622	MGI:5596023	protein coding gene	predicted gene, 36864
7	gene	44.23975	44.24003	positive	MGI_C57BL6J_5455163	Gm25386	ENSEMBL:ENSMUSG00000088439	MGI:5455163	unclassified non-coding RNA gene	predicted gene, 25386
7	gene	44.24672	44.25232	positive	MGI_C57BL6J_1914226	2410002F23Rik	NCBI_Gene:668661,ENSEMBL:ENSMUSG00000045411	MGI:1914226	protein coding gene	RIKEN cDNA 2410002F23 gene
7	gene	44.24673	44.26272	positive	MGI_C57BL6J_5579202	Gm28496	ENSEMBL:ENSMUSG00000101166	MGI:5579202	lncRNA gene	predicted gene 28496
7	gene	44.24809	44.24818	positive	MGI_C57BL6J_5456024	Gm26247	ENSEMBL:ENSMUSG00000080352	MGI:5456024	snoRNA gene	predicted gene, 26247
7	gene	44.24985	44.24994	positive	MGI_C57BL6J_3819561	Snord88c	NCBI_Gene:100217434,ENSEMBL:ENSMUSG00000096296	MGI:3819561	snoRNA gene	small nucleolar RNA, C/D box 88C
7	gene	44.25014	44.25022	positive	MGI_C57BL6J_3819560	Snord88a	NCBI_Gene:100217433,ENSEMBL:ENSMUSG00000095472	MGI:3819560	snoRNA gene	small nucleolar RNA, C/D box 88A
7	gene	44.25045	44.25054	positive	MGI_C57BL6J_5453768	Gm23991	ENSEMBL:ENSMUSG00000080683	MGI:5453768	snoRNA gene	predicted gene, 23991
7	gene	44.25201	44.26135	negative	MGI_C57BL6J_3644563	Acp4	NCBI_Gene:100503991,ENSEMBL:ENSMUSG00000012777	MGI:3644563	protein coding gene	acid phosphatase 4
7	gene	44.26135	44.26374	positive	MGI_C57BL6J_3782964	Gm15517	NCBI_Gene:628854,ENSEMBL:ENSMUSG00000087376	MGI:3782964	protein coding gene	predicted gene 15517
7	pseudogene	44.26762	44.27316	negative	MGI_C57BL6J_5011090	Gm18905	NCBI_Gene:102632142,ENSEMBL:ENSMUSG00000108705	MGI:5011090	pseudogene	predicted gene, 18905
7	pseudogene	44.28143	44.28240	negative	MGI_C57BL6J_5010492	Gm18307	NCBI_Gene:100416897,ENSEMBL:ENSMUSG00000108343	MGI:5010492	pseudogene	predicted gene, 18307
7	pseudogene	44.29613	44.30165	negative	MGI_C57BL6J_3647237	Gm7238	NCBI_Gene:638453,ENSEMBL:ENSMUSG00000108512	MGI:3647237	pseudogene	predicted gene 7238
7	gene	44.30269	44.30696	negative	MGI_C57BL6J_1298219	Clec11a	NCBI_Gene:20256,ENSEMBL:ENSMUSG00000004473	MGI:1298219	protein coding gene	C-type lectin domain family 11, member a
7	gene	44.30790	44.36057	positive	MGI_C57BL6J_3613677	Shank1	NCBI_Gene:243961,ENSEMBL:ENSMUSG00000038738	MGI:3613677	protein coding gene	SH3 and multiple ankyrin repeat domains 1
7	gene	44.31475	44.31491	positive	MGI_C57BL6J_5753333	Gm44757	ENSEMBL:ENSMUSG00000108719	MGI:5753333	unclassified gene	predicted gene 44757
7	gene	44.36004	44.38582	negative	MGI_C57BL6J_1916599	1700008O03Rik	NCBI_Gene:69349,ENSEMBL:ENSMUSG00000008028	MGI:1916599	protein coding gene	RIKEN cDNA 1700008O03 gene
7	gene	44.36256	44.36329	positive	MGI_C57BL6J_5753356	Gm44780	ENSEMBL:ENSMUSG00000108509	MGI:5753356	lncRNA gene	predicted gene 44780
7	gene	44.37450	44.37590	positive	MGI_C57BL6J_5621886	Gm39001	NCBI_Gene:105242929	MGI:5621886	lncRNA gene	predicted gene, 39001
7	gene	44.37889	44.38582	negative	MGI_C57BL6J_2441852	B230219N05Rik	NA	NA	unclassified gene	RIKEN cDNA B230219N05 gene
7	gene	44.38410	44.40019	positive	MGI_C57BL6J_99665	Syt3	NCBI_Gene:20981,ENSEMBL:ENSMUSG00000030731	MGI:99665	protein coding gene	synaptotagmin III
7	gene	44.38640	44.38915	positive	MGI_C57BL6J_5753700	Gm45124	ENSEMBL:ENSMUSG00000108372	MGI:5753700	unclassified gene	predicted gene 45124
7	gene	44.42059	44.43193	negative	MGI_C57BL6J_5621887	Gm39002	NCBI_Gene:105242930	MGI:5621887	protein coding gene	predicted gene, 39002
7	gene	44.42902	44.46335	positive	MGI_C57BL6J_3027390	Lrrc4b	NCBI_Gene:272381,ENSEMBL:ENSMUSG00000047085	MGI:3027390	protein coding gene	leucine rich repeat containing 4B
7	gene	44.44689	44.45182	negative	MGI_C57BL6J_5621888	Gm39003	NCBI_Gene:105242931	MGI:5621888	lncRNA gene	predicted gene, 39003
7	gene	44.46539	44.46776	positive	MGI_C57BL6J_1915602	Aspdh	NCBI_Gene:68352,ENSEMBL:ENSMUSG00000038704	MGI:1915602	protein coding gene	aspartate dehydrogenase domain containing
7	gene	44.46798	44.47166	positive	MGI_C57BL6J_1913374	Josd2	NCBI_Gene:66124,ENSEMBL:ENSMUSG00000038695	MGI:1913374	protein coding gene	Josephin domain containing 2
7	gene	44.47035	44.47041	positive	MGI_C57BL6J_5530965	Mir7052	miRBase:MI0022901,NCBI_Gene:102465637,ENSEMBL:ENSMUSG00000098661	MGI:5530965	miRNA gene	microRNA 7052
7	gene	44.47354	44.48614	positive	MGI_C57BL6J_1918618	5430431A17Rik	NCBI_Gene:71368,ENSEMBL:ENSMUSG00000108322	MGI:1918618	lncRNA gene	RIKEN cDNA 5430431A17 gene
7	gene	44.48994	44.49653	negative	MGI_C57BL6J_1916933	Emc10	NCBI_Gene:69683,ENSEMBL:ENSMUSG00000008140	MGI:1916933	protein coding gene	ER membrane protein complex subunit 10
7	gene	44.49658	44.50427	positive	MGI_C57BL6J_1922788	Fam71e1	NCBI_Gene:75538,ENSEMBL:ENSMUSG00000051113	MGI:1922788	protein coding gene	family with sequence similarity 71, member E1
7	gene	44.49724	44.49772	negative	MGI_C57BL6J_1925387	4921540A03Rik	NA	NA	unclassified gene	RIKEN cDNA 4921540A03 gene
7	gene	44.50169	44.50427	positive	MGI_C57BL6J_5753222	Gm44646	ENSEMBL:ENSMUSG00000108607	MGI:5753222	lncRNA gene	predicted gene 44646
7	gene	44.50170	44.52472	negative	MGI_C57BL6J_1336170	Mybpc2	NCBI_Gene:233199,ENSEMBL:ENSMUSG00000038670	MGI:1336170	protein coding gene	myosin binding protein C, fast-type
7	gene	44.52599	44.53209	negative	MGI_C57BL6J_892986	Spib	NCBI_Gene:272382,ENSEMBL:ENSMUSG00000008193	MGI:892986	protein coding gene	Spi-B transcription factor (Spi-1/PU.1 related)
7	gene	44.53274	44.54885	negative	MGI_C57BL6J_97741	Pold1	NCBI_Gene:18971,ENSEMBL:ENSMUSG00000038644	MGI:97741	protein coding gene	polymerase (DNA directed), delta 1, catalytic subunit
7	gene	44.53811	44.53818	negative	MGI_C57BL6J_5530885	Mir7053	miRBase:MI0022902,NCBI_Gene:102466796,ENSEMBL:ENSMUSG00000099330	MGI:5530885	miRNA gene	microRNA 7053
7	pseudogene	44.54515	44.54548	positive	MGI_C57BL6J_5753409	Gm44833	ENSEMBL:ENSMUSG00000109236	MGI:5753409	pseudogene	predicted gene 44833
7	gene	44.54962	44.55397	negative	MGI_C57BL6J_1352463	Nr1h2	NCBI_Gene:22260,ENSEMBL:ENSMUSG00000060601	MGI:1352463	protein coding gene	nuclear receptor subfamily 1, group H, member 2
7	gene	44.57238	44.58686	positive	MGI_C57BL6J_109365	Napsa	NCBI_Gene:16541,ENSEMBL:ENSMUSG00000002204	MGI:109365	protein coding gene	napsin A aspartic peptidase
7	gene	44.57997	44.59062	negative	MGI_C57BL6J_3705202	Gm15396	NCBI_Gene:102632404,ENSEMBL:ENSMUSG00000109491	MGI:3705202	lncRNA gene	predicted gene 15396
7	gene	44.58738	44.59037	positive	MGI_C57BL6J_5825618	Gm45981	NCBI_Gene:108167420	MGI:5825618	lncRNA gene	predicted gene, 45981
7	gene	44.59066	44.60475	positive	MGI_C57BL6J_96669	Kcnc3	NCBI_Gene:16504,ENSEMBL:ENSMUSG00000062785	MGI:96669	protein coding gene	potassium voltage gated channel, Shaw-related subfamily, member 3
7	gene	44.59358	44.59588	negative	MGI_C57BL6J_5753408	Gm44832	ENSEMBL:ENSMUSG00000108832	MGI:5753408	lncRNA gene	predicted gene 44832
7	gene	44.60580	44.67084	negative	MGI_C57BL6J_1919210	Myh14	NCBI_Gene:71960,ENSEMBL:ENSMUSG00000030739	MGI:1919210	protein coding gene	myosin, heavy polypeptide 14
7	pseudogene	44.64542	44.64635	positive	MGI_C57BL6J_5010441	Gm18256	NCBI_Gene:100416794,ENSEMBL:ENSMUSG00000109352	MGI:5010441	pseudogene	predicted gene, 18256
7	gene	44.66815	44.67824	positive	MGI_C57BL6J_1916828	2310016G11Rik	NCBI_Gene:69578,ENSEMBL:ENSMUSG00000070574	MGI:1916828	lncRNA gene	RIKEN cDNA 2310016G11 gene
7	gene	44.70870	44.71984	positive	MGI_C57BL6J_1922760	Izumo2	NCBI_Gene:75510,ENSEMBL:ENSMUSG00000066500	MGI:1922760	protein coding gene	IZUMO family member 2
7	gene	44.73148	44.75105	negative	MGI_C57BL6J_2442697	Zfp473	NCBI_Gene:243963,ENSEMBL:ENSMUSG00000048012	MGI:2442697	protein coding gene	zinc finger protein 473
7	gene	44.74841	44.77752	positive	MGI_C57BL6J_2182465	Vrk3	NCBI_Gene:101568,ENSEMBL:ENSMUSG00000002205	MGI:2182465	protein coding gene	vaccinia related kinase 3
7	gene	44.77286	44.77497	positive	MGI_C57BL6J_2443209	A130002D19Rik	NA	NA	unclassified gene	RIKEN cDNA A130002D19 gene
7	gene	44.78866	44.79108	negative	MGI_C57BL6J_5588950	Gm29791	NCBI_Gene:101056178,ENSEMBL:ENSMUSG00000109227	MGI:5588950	lncRNA gene	predicted gene, 29791
7	gene	44.81226	44.81666	negative	MGI_C57BL6J_2141857	Atf5	NCBI_Gene:107503,ENSEMBL:ENSMUSG00000038539	MGI:2141857	protein coding gene	activating transcription factor 5
7	gene	44.81609	44.83184	positive	MGI_C57BL6J_1351500	Nup62	NCBI_Gene:18226,ENSEMBL:ENSMUSG00000109511	MGI:1351500	protein coding gene	nucleoporin 62
7	gene	44.81637	44.84080	positive	MGI_C57BL6J_5439399	Il4i1b	NCBI_Gene:100328588	MGI:5439399	protein coding gene	interleukin 4 induced 1B
7	gene	44.81639	44.84081	positive	MGI_C57BL6J_109552	Il4i1	NCBI_Gene:14204,ENSEMBL:ENSMUSG00000074141	MGI:109552	protein coding gene	interleukin 4 induced 1
7	gene	44.83462	44.84908	negative	MGI_C57BL6J_2449973	Tbc1d17	NCBI_Gene:233204,ENSEMBL:ENSMUSG00000038520	MGI:2449973	protein coding gene	TBC1 domain family, member 17
7	gene	44.84899	44.85542	positive	MGI_C57BL6J_1914855	Akt1s1	NCBI_Gene:67605,ENSEMBL:ENSMUSG00000011096	MGI:1914855	protein coding gene	AKT1 substrate 1 (proline-rich)
7	gene	44.84970	44.84977	positive	MGI_C57BL6J_3629685	Mir707	miRBase:MI0004691,NCBI_Gene:735269,ENSEMBL:ENSMUSG00000076051	MGI:3629685	miRNA gene	microRNA 707
7	gene	44.85648	44.86299	positive	MGI_C57BL6J_1891698	Pnkp	NCBI_Gene:59047,ENSEMBL:ENSMUSG00000002963	MGI:1891698	protein coding gene	polynucleotide kinase 3’- phosphatase
7	gene	44.86307	44.87049	negative	MGI_C57BL6J_1933946	Ptov1	NCBI_Gene:84113,ENSEMBL:ENSMUSG00000038502	MGI:1933946	protein coding gene	prostate tumor over expressed gene 1
7	gene	44.87676	44.89271	negative	MGI_C57BL6J_1922863	Med25	NCBI_Gene:75613,ENSEMBL:ENSMUSG00000002968	MGI:1922863	protein coding gene	mediator complex subunit 25
7	gene	44.89431	44.89810	negative	MGI_C57BL6J_106455	D7Bwg0826e	ENSEMBL:ENSMUSG00000109198	MGI:106455	unclassified gene	DNA segment, Chr 7, Brigham %26 Women’s Genetics 0826 expressed
7	gene	44.89608	44.90263	positive	MGI_C57BL6J_1917550	Fuz	NCBI_Gene:70300,ENSEMBL:ENSMUSG00000011658	MGI:1917550	protein coding gene	fuzzy planar cell polarity protein
7	gene	44.90037	44.92950	negative	MGI_C57BL6J_101921	Ap2a1	NCBI_Gene:11771,ENSEMBL:ENSMUSG00000060279	MGI:101921	protein coding gene	adaptor-related protein complex 2, alpha 1 subunit
7	gene	44.90614	44.90743	positive	MGI_C57BL6J_5590187	Gm31028	NCBI_Gene:102633121	MGI:5590187	lncRNA gene	predicted gene, 31028
7	gene	44.92958	44.95804	positive	MGI_C57BL6J_1347560	Tsks	NCBI_Gene:22116,ENSEMBL:ENSMUSG00000059891	MGI:1347560	protein coding gene	testis-specific serine kinase substrate
7	gene	44.95848	44.97485	negative	MGI_C57BL6J_2446526	Cpt1c	NCBI_Gene:78070,ENSEMBL:ENSMUSG00000007783	MGI:2446526	protein coding gene	carnitine palmitoyltransferase 1c
7	gene	44.97043	44.97430	positive	MGI_C57BL6J_1925320	6530437J22Rik	ENSEMBL:ENSMUSG00000109111	MGI:1925320	lncRNA gene	RIKEN cDNA 6530437J22 gene
7	gene	44.97599	44.98657	negative	MGI_C57BL6J_107846	Prmt1	NCBI_Gene:15469,ENSEMBL:ENSMUSG00000109324	MGI:107846	protein coding gene	protein arginine N-methyltransferase 1
7	gene	44.98690	44.99460	positive	MGI_C57BL6J_3782994	Gm15545	NCBI_Gene:100502630,ENSEMBL:ENSMUSG00000087138	MGI:3782994	lncRNA gene	predicted gene 15545
7	gene	44.99122	44.99871	negative	MGI_C57BL6J_1922986	Bcl2l12	NCBI_Gene:75736,ENSEMBL:ENSMUSG00000003190	MGI:1922986	protein coding gene	BCL2-like 12 (proline rich)
7	gene	44.99765	45.00285	positive	MGI_C57BL6J_1859179	Irf3	NCBI_Gene:54131,ENSEMBL:ENSMUSG00000003184	MGI:1859179	protein coding gene	interferon regulatory factor 3
7	gene	45.00295	45.01636	negative	MGI_C57BL6J_2141980	Scaf1	NCBI_Gene:233208,ENSEMBL:ENSMUSG00000038406	MGI:2141980	protein coding gene	SR-related CTD-associated factor 1
7	gene	45.01243	45.01249	negative	MGI_C57BL6J_5530939	Mir7054	miRBase:MI0022903,NCBI_Gene:102466218,ENSEMBL:ENSMUSG00000098839	MGI:5530939	miRNA gene	microRNA 7054
7	gene	45.01640	45.01769	positive	MGI_C57BL6J_5825619	Gm45982	NCBI_Gene:108167421	MGI:5825619	lncRNA gene	predicted gene, 45982
7	gene	45.01796	45.02165	positive	MGI_C57BL6J_98179	Rras	NCBI_Gene:20130,ENSEMBL:ENSMUSG00000038387	MGI:98179	protein coding gene	related RAS viral (r-ras) oncogene
7	gene	45.02756	45.05288	negative	MGI_C57BL6J_2679002	Prr12	NCBI_Gene:233210,ENSEMBL:ENSMUSG00000046574	MGI:2679002	protein coding gene	proline rich 12
7	gene	45.05358	45.06288	negative	MGI_C57BL6J_1929596	Prrg2	NCBI_Gene:65116,ENSEMBL:ENSMUSG00000007837	MGI:1929596	protein coding gene	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
7	gene	45.06243	45.07850	positive	MGI_C57BL6J_1913644	Nosip	NCBI_Gene:66394,ENSEMBL:ENSMUSG00000003421	MGI:1913644	protein coding gene	nitric oxide synthase interacting protein
7	gene	45.08291	45.09226	negative	MGI_C57BL6J_1277122	Rcn3	NCBI_Gene:52377,ENSEMBL:ENSMUSG00000019539	MGI:1277122	protein coding gene	reticulocalbin 3, EF-hand calcium binding domain
7	gene	45.09141	45.09832	positive	MGI_C57BL6J_5791505	Gm45669	ENSEMBL:ENSMUSG00000109947	MGI:5791505	lncRNA gene	predicted gene 45669
7	gene	45.09299	45.10385	negative	MGI_C57BL6J_103017	Fcgrt	NCBI_Gene:14132,ENSEMBL:ENSMUSG00000003420	MGI:103017	protein coding gene	Fc receptor, IgG, alpha chain transporter
7	gene	45.12176	45.12182	positive	MGI_C57BL6J_2676835	Mir150	miRBase:MI0000172,NCBI_Gene:387168,ENSEMBL:ENSMUSG00000065495	MGI:2676835	miRNA gene	microRNA 150
7	gene	45.12192	45.12414	positive	MGI_C57BL6J_5791388	Gm45552	ENSEMBL:ENSMUSG00000110279	MGI:5791388	lncRNA gene	predicted gene 45552
7	gene	45.12238	45.12444	negative	MGI_C57BL6J_1351329	Rps11	NCBI_Gene:27207,ENSEMBL:ENSMUSG00000003429	MGI:1351329	protein coding gene	ribosomal protein S11
7	gene	45.12302	45.12311	negative	MGI_C57BL6J_1351321	Snord35b	NCBI_Gene:27212,ENSEMBL:ENSMUSG00000064767	MGI:1351321	snoRNA gene	small nucleolar RNA, C/D box 35B
7	gene	45.12556	45.12876	negative	MGI_C57BL6J_1351455	Rpl13a	NCBI_Gene:22121,ENSEMBL:ENSMUSG00000074129	MGI:1351455	protein coding gene	ribosomal protein L13A
7	gene	45.12592	45.13623	negative	MGI_C57BL6J_5804828	Gm45713	ENSEMBL:ENSMUSG00000089989	MGI:5804828	protein coding gene	predicted gene 45713
7	gene	45.12635	45.12644	negative	MGI_C57BL6J_1351319	Snord35a	NCBI_Gene:27211,ENSEMBL:ENSMUSG00000065818	MGI:1351319	snoRNA gene	small nucleolar RNA, C/D box 35A
7	gene	45.12660	45.12667	negative	MGI_C57BL6J_1351325	Snord34	NCBI_Gene:27210,ENSEMBL:ENSMUSG00000065878	MGI:1351325	snoRNA gene	small nucleolar RNA, C/D box 34
7	gene	45.12686	45.12695	negative	MGI_C57BL6J_1351323	Snord33	NCBI_Gene:27208,ENSEMBL:ENSMUSG00000065628	MGI:1351323	snoRNA gene	small nucleolar RNA, C/D box 33
7	gene	45.12692	45.12699	negative	MGI_C57BL6J_4950446	Mir5121	miRBase:MI0018030,NCBI_Gene:100628629,ENSEMBL:ENSMUSG00000105913	MGI:4950446	miRNA gene	microRNA 5121
7	gene	45.12738	45.12746	negative	MGI_C57BL6J_1351324	Snord32a	NCBI_Gene:27209,ENSEMBL:ENSMUSG00000065219	MGI:1351324	snoRNA gene	small nucleolar RNA, C/D box 32A
7	gene	45.12979	45.13649	negative	MGI_C57BL6J_95560	Flt3l	NCBI_Gene:14256,ENSEMBL:ENSMUSG00000110206	MGI:95560	protein coding gene	FMS-like tyrosine kinase 3 ligand
7	gene	45.14068	45.15458	negative	MGI_C57BL6J_1916998	Aldh16a1	NCBI_Gene:69748,ENSEMBL:ENSMUSG00000007833	MGI:1916998	protein coding gene	aldehyde dehydrogenase 16 family, member A1
7	gene	45.15430	45.16007	positive	MGI_C57BL6J_1916095	Pih1d1	NCBI_Gene:68845,ENSEMBL:ENSMUSG00000003423	MGI:1916095	protein coding gene	PIH1 domain containing 1
7	gene	45.16392	45.17614	positive	MGI_C57BL6J_1920211	Slc17a7	NCBI_Gene:72961,ENSEMBL:ENSMUSG00000070570	MGI:1920211	protein coding gene	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
7	gene	45.17330	45.17336	positive	MGI_C57BL6J_5562777	Mir7055	miRBase:MI0022904,NCBI_Gene:102465638,ENSEMBL:ENSMUSG00000106470	MGI:5562777	miRNA gene	microRNA 7055
7	gene	45.17635	45.17960	negative	MGI_C57BL6J_2685427	Gfy	NCBI_Gene:100039953,ENSEMBL:ENSMUSG00000095276	MGI:2685427	protein coding gene	golgi-associated olfactory signaling regulator
7	gene	45.17654	45.18184	positive	MGI_C57BL6J_2152297	Pth2	NCBI_Gene:114640,ENSEMBL:ENSMUSG00000038300	MGI:2152297	protein coding gene	parathyroid hormone 2
7	gene	45.18362	45.20493	negative	MGI_C57BL6J_2687329	Ccdc155	NCBI_Gene:384619,ENSEMBL:ENSMUSG00000038292	MGI:2687329	protein coding gene	coiled-coil domain containing 155
7	gene	45.18893	45.19149	positive	MGI_C57BL6J_5590256	Gm31097	NCBI_Gene:102633211	MGI:5590256	lncRNA gene	predicted gene, 31097
7	gene	45.20752	45.21260	negative	MGI_C57BL6J_1354963	Dkkl1	NCBI_Gene:50722,ENSEMBL:ENSMUSG00000030792	MGI:1354963	protein coding gene	dickkopf-like 1
7	gene	45.21575	45.23364	positive	MGI_C57BL6J_104904	Tead2	NCBI_Gene:21677,ENSEMBL:ENSMUSG00000030796	MGI:104904	protein coding gene	TEA domain family member 2
7	gene	45.23363	45.23923	negative	MGI_C57BL6J_88330	Cd37	NCBI_Gene:12493,ENSEMBL:ENSMUSG00000030798	MGI:88330	protein coding gene	CD37 antigen
7	gene	45.24075	45.27337	positive	MGI_C57BL6J_2685930	Slc6a16	NCBI_Gene:381884,ENSEMBL:ENSMUSG00000094152	MGI:2685930	protein coding gene	solute carrier family 6, member 16
7	gene	45.25445	45.25455	negative	MGI_C57BL6J_5453362	Gm23585	ENSEMBL:ENSMUSG00000088281	MGI:5453362	snRNA gene	predicted gene, 23585
7	gene	45.27733	45.28900	positive	MGI_C57BL6J_1923963	Slc6a21	NCBI_Gene:76713,ENSEMBL:ENSMUSG00000070568	MGI:1923963	protein coding gene	solute carrier family 6 member 21
7	gene	45.29916	45.30236	negative	MGI_C57BL6J_5621891	Gm39006	NCBI_Gene:105242934	MGI:5621891	lncRNA gene	predicted gene, 39006
7	gene	45.30263	45.33407	negative	MGI_C57BL6J_1915917	Trpm4	NCBI_Gene:68667,ENSEMBL:ENSMUSG00000038260	MGI:1915917	protein coding gene	transient receptor potential cation channel, subfamily M, member 4
7	pseudogene	45.32496	45.32565	positive	MGI_C57BL6J_3710579	Rpl14-ps1	NCBI_Gene:100040970,ENSEMBL:ENSMUSG00000046721	MGI:3710579	pseudogene	ribosomal protein L14, pseudogene 1
7	gene	45.33527	45.33897	positive	MGI_C57BL6J_96226	Hrc	NCBI_Gene:15464,ENSEMBL:ENSMUSG00000038239	MGI:96226	protein coding gene	histidine rich calcium binding protein
7	gene	45.33912	45.36702	negative	MGI_C57BL6J_1924037	Ppfia3	NCBI_Gene:76787,ENSEMBL:ENSMUSG00000003863	MGI:1924037	protein coding gene	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
7	gene	45.36616	45.36795	positive	MGI_C57BL6J_1860766	Mtag2	NCBI_Gene:50994,ENSEMBL:ENSMUSG00000091510	MGI:1860766	lncRNA gene	metastasis associated gene 2
7	gene	45.36789	45.37058	negative	MGI_C57BL6J_1330858	Lin7b	NCBI_Gene:22342,ENSEMBL:ENSMUSG00000003872	MGI:1330858	protein coding gene	lin-7 homolog B (C. elegans)
7	gene	45.36818	45.36870	positive	MGI_C57BL6J_5791455	Gm45619	ENSEMBL:ENSMUSG00000110070	MGI:5791455	lncRNA gene	predicted gene 45619
7	gene	45.37645	45.39574	negative	MGI_C57BL6J_98341	Snrnp70	NCBI_Gene:20637,ENSEMBL:ENSMUSG00000063511	MGI:98341	protein coding gene	small nuclear ribonucleoprotein 70 (U1)
7	gene	45.38853	45.38868	positive	MGI_C57BL6J_5452255	Gm22478	ENSEMBL:ENSMUSG00000084519	MGI:5452255	snoRNA gene	predicted gene, 22478
7	gene	45.40565	45.41138	positive	MGI_C57BL6J_96664	Kcna7	NCBI_Gene:16495,ENSEMBL:ENSMUSG00000038201	MGI:96664	protein coding gene	potassium voltage-gated channel, shaker-related subfamily, member 7
7	gene	45.41369	45.41718	positive	MGI_C57BL6J_97381	Ntf5	NCBI_Gene:78405,ENSEMBL:ENSMUSG00000074121	MGI:97381	protein coding gene	neurotrophin 5
7	gene	45.41747	45.42190	positive	MGI_C57BL6J_96782	Lhb	NCBI_Gene:16866,ENSEMBL:ENSMUSG00000100916	MGI:96782	protein coding gene	luteinizing hormone beta
7	gene	45.42176	45.43810	negative	MGI_C57BL6J_1342299	Ruvbl2	NCBI_Gene:20174,ENSEMBL:ENSMUSG00000003868	MGI:1342299	protein coding gene	RuvB-like protein 2
7	gene	45.43484	45.45662	positive	MGI_C57BL6J_101805	Gys1	NCBI_Gene:14936,ENSEMBL:ENSMUSG00000003865	MGI:101805	protein coding gene	glycogen synthase 1, muscle
7	gene	45.45794	45.45989	negative	MGI_C57BL6J_95589	Ftl1	NCBI_Gene:14325,ENSEMBL:ENSMUSG00000050708	MGI:95589	protein coding gene	ferritin light polypeptide 1
7	gene	45.45809	45.45820	negative	MGI_C57BL6J_5451910	Gm22133	ENSEMBL:ENSMUSG00000076036	MGI:5451910	miRNA gene	predicted gene, 22133
7	gene	45.45947	45.46030	positive	MGI_C57BL6J_3704292	Gm10252	ENSEMBL:ENSMUSG00000110350	MGI:3704292	unclassified gene	predicted gene 10252
7	gene	45.46169	45.46820	negative	MGI_C57BL6J_99702	Bax	NCBI_Gene:12028,ENSEMBL:ENSMUSG00000003873	MGI:99702	protein coding gene	BCL2-associated X protein
7	gene	45.46598	45.48681	negative	MGI_C57BL6J_5804923	Gm45808	ENSEMBL:ENSMUSG00000109926	MGI:5804923	protein coding gene	predicted gene 45808
7	gene	45.47099	45.48887	negative	MGI_C57BL6J_1919005	Dhdh	NCBI_Gene:71755,ENSEMBL:ENSMUSG00000011382	MGI:1919005	protein coding gene	dihydrodiol dehydrogenase (dimeric)
7	gene	45.48188	45.52363	positive	MGI_C57BL6J_1861600	Tulp2	NCBI_Gene:56734,ENSEMBL:ENSMUSG00000023467	MGI:1861600	protein coding gene	tubby-like protein 2
7	gene	45.49046	45.51041	negative	MGI_C57BL6J_97388	Nucb1	NCBI_Gene:18220,ENSEMBL:ENSMUSG00000030824	MGI:97388	protein coding gene	nucleobindin 1
7	pseudogene	45.51236	45.51257	negative	MGI_C57BL6J_5791314	Gm45478	ENSEMBL:ENSMUSG00000110387	MGI:5791314	pseudogene	predicted gene 45478
7	gene	45.52292	45.52627	negative	MGI_C57BL6J_1927072	Ppp1r15a	NCBI_Gene:17872,ENSEMBL:ENSMUSG00000040435	MGI:1927072	protein coding gene	protein phosphatase 1, regulatory subunit 15A
7	gene	45.52633	45.55423	positive	MGI_C57BL6J_1916467	Plekha4	NCBI_Gene:69217,ENSEMBL:ENSMUSG00000040428	MGI:1916467	protein coding gene	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4
7	gene	45.55053	45.55161	negative	MGI_C57BL6J_5791400	Gm45564	ENSEMBL:ENSMUSG00000110144	MGI:5791400	lncRNA gene	predicted gene 45564
7	gene	45.55486	45.56775	positive	MGI_C57BL6J_1913315	Hsd17b14	NCBI_Gene:66065,ENSEMBL:ENSMUSG00000030825	MGI:1913315	protein coding gene	hydroxysteroid (17-beta) dehydrogenase 14
7	gene	45.56779	45.57533	negative	MGI_C57BL6J_1918911	0610005C13Rik	NCBI_Gene:71661,ENSEMBL:ENSMUSG00000109644	MGI:1918911	lncRNA gene	RIKEN cDNA 0610005C13 gene
7	gene	45.56976	45.58971	positive	MGI_C57BL6J_1276534	Bcat2	NCBI_Gene:12036,ENSEMBL:ENSMUSG00000030826	MGI:1276534	protein coding gene	branched chain aminotransferase 2, mitochondrial
7	gene	45.59553	45.60355	positive	MGI_C57BL6J_5590638	Gm31479	NCBI_Gene:102633721,ENSEMBL:ENSMUSG00000109632	MGI:5590638	lncRNA gene	predicted gene, 31479
7	gene	45.61389	45.61935	negative	MGI_C57BL6J_1861377	Fgf21	NCBI_Gene:56636,ENSEMBL:ENSMUSG00000030827	MGI:1861377	protein coding gene	fibroblast growth factor 21
7	gene	45.61727	45.62106	positive	MGI_C57BL6J_109375	Fut1	NCBI_Gene:14343,ENSEMBL:ENSMUSG00000008461	MGI:109375	protein coding gene	fucosyltransferase 1
7	gene	45.62181	45.62882	positive	MGI_C57BL6J_1920706	Izumo1	NCBI_Gene:73456,ENSEMBL:ENSMUSG00000064158	MGI:1920706	protein coding gene	izumo sperm-egg fusion 1
7	gene	45.62749	45.63909	positive	MGI_C57BL6J_1917153	Rasip1	NCBI_Gene:69903,ENSEMBL:ENSMUSG00000044562	MGI:1917153	protein coding gene	Ras interacting protein 1
7	gene	45.63066	45.63308	negative	MGI_C57BL6J_5791273	Gm45437	ENSEMBL:ENSMUSG00000109998	MGI:5791273	lncRNA gene	predicted gene 45437
7	gene	45.63567	45.63877	negative	MGI_C57BL6J_3696869	A030001D20Rik	NCBI_Gene:100126243,ENSEMBL:ENSMUSG00000110357	MGI:3696869	lncRNA gene	RIKEN cDNA A030001D20 gene
7	gene	45.63919	45.64821	positive	MGI_C57BL6J_1921740	Mamstr	NCBI_Gene:74490,ENSEMBL:ENSMUSG00000042918	MGI:1921740	protein coding gene	MEF2 activating motif and SAP domain containing transcriptional regulator
7	gene	45.64859	45.66639	negative	MGI_C57BL6J_109374	Fut2	NCBI_Gene:14344,ENSEMBL:ENSMUSG00000055978	MGI:109374	protein coding gene	fucosyltransferase 2
7	gene	45.65905	45.66582	positive	MGI_C57BL6J_5621893	Gm39008	NCBI_Gene:105242936	MGI:5621893	lncRNA gene	predicted gene, 39008
7	gene	45.66631	45.67762	positive	MGI_C57BL6J_5621892	Gm39007	NCBI_Gene:105242935	MGI:5621892	lncRNA gene	predicted gene, 39007
7	gene	45.67769	45.69440	negative	MGI_C57BL6J_1928893	Sec1	NCBI_Gene:56546,ENSEMBL:ENSMUSG00000040364	MGI:1928893	protein coding gene	secretory blood group 1
7	gene	45.68402	45.69456	positive	MGI_C57BL6J_2685330	Ntn5	NCBI_Gene:243967,ENSEMBL:ENSMUSG00000070564	MGI:2685330	protein coding gene	netrin 5
7	gene	45.69979	45.70468	positive	MGI_C57BL6J_1336193	Car11	NCBI_Gene:12348,ENSEMBL:ENSMUSG00000003273	MGI:1336193	protein coding gene	carbonic anhydrase 11
7	gene	45.70509	45.71020	positive	MGI_C57BL6J_94866	Dbp	NCBI_Gene:13170,ENSEMBL:ENSMUSG00000059824	MGI:94866	protein coding gene	D site albumin promoter binding protein
7	gene	45.70946	45.71800	negative	MGI_C57BL6J_1861380	Sphk2	NCBI_Gene:56632,ENSEMBL:ENSMUSG00000057342	MGI:1861380	protein coding gene	sphingosine kinase 2
7	gene	45.71546	45.72084	positive	MGI_C57BL6J_98003	Rpl18	NCBI_Gene:19899,ENSEMBL:ENSMUSG00000059070	MGI:98003	protein coding gene	ribosomal protein L18
7	gene	45.72117	45.78467	negative	MGI_C57BL6J_1926342	Sult2b1	NCBI_Gene:54200,ENSEMBL:ENSMUSG00000003271	MGI:1926342	protein coding gene	sulfotransferase family, cytosolic, 2B, member 1
7	gene	45.72121	45.72949	positive	MGI_C57BL6J_1921063	Fam83e	NCBI_Gene:73813,ENSEMBL:ENSMUSG00000054161	MGI:1921063	protein coding gene	family with sequence similarity 83, member E
7	gene	45.72511	45.72582	negative	MGI_C57BL6J_1916613	Spaca4	NCBI_Gene:69363,ENSEMBL:ENSMUSG00000070563	MGI:1916613	protein coding gene	sperm acrosome associated 4
7	gene	45.74204	45.75085	positive	MGI_C57BL6J_5590756	Gm31597	NCBI_Gene:102633874,ENSEMBL:ENSMUSG00000109602	MGI:5590756	lncRNA gene	predicted gene, 31597
7	gene	45.76535	45.77579	positive	MGI_C57BL6J_5621894	Gm39009	NCBI_Gene:105242937	MGI:5621894	lncRNA gene	predicted gene, 39009
7	gene	45.78371	45.80689	positive	MGI_C57BL6J_3039582	Lmtk3	NCBI_Gene:381983,ENSEMBL:ENSMUSG00000062044	MGI:3039582	protein coding gene	lemur tyrosine kinase 3
7	gene	45.80664	45.81458	negative	MGI_C57BL6J_1334255	Cyth2	NCBI_Gene:19158,ENSEMBL:ENSMUSG00000003269	MGI:1334255	protein coding gene	cytohesin 2
7	gene	45.81402	45.81492	positive	MGI_C57BL6J_5791280	Gm45444	ENSEMBL:ENSMUSG00000110197	MGI:5791280	unclassified gene	predicted gene 45444
7	gene	45.81645	45.82478	negative	MGI_C57BL6J_2384820	Kcnj14	NCBI_Gene:211480,ENSEMBL:ENSMUSG00000058743	MGI:2384820	protein coding gene	potassium inwardly-rectifying channel, subfamily J, member 14
7	gene	45.82522	45.83099	negative	MGI_C57BL6J_2141989	Grwd1	NCBI_Gene:101612,ENSEMBL:ENSMUSG00000053801	MGI:2141989	protein coding gene	glutamate-rich WD repeat containing 1
7	gene	45.83089	45.83525	positive	MGI_C57BL6J_5791277	Gm45441	ENSEMBL:ENSMUSG00000110020	MGI:5791277	lncRNA gene	predicted gene 45441
7	gene	45.83188	45.87838	negative	MGI_C57BL6J_95823	Grin2d	NCBI_Gene:14814,ENSEMBL:ENSMUSG00000002771	MGI:95823	protein coding gene	glutamate receptor, ionotropic, NMDA2D (epsilon 4)
7	gene	45.87277	45.88373	positive	MGI_C57BL6J_1915387	Kdelr1	NCBI_Gene:68137,ENSEMBL:ENSMUSG00000002778	MGI:1915387	protein coding gene	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
7	gene	45.87555	45.87563	negative	MGI_C57BL6J_5451875	Gm22098	ENSEMBL:ENSMUSG00000088555	MGI:5451875	snRNA gene	predicted gene, 22098
7	gene	45.88464	45.89674	negative	MGI_C57BL6J_1928903	Syngr4	NCBI_Gene:58867,ENSEMBL:ENSMUSG00000040231	MGI:1928903	protein coding gene	synaptogyrin 4
7	gene	45.89694	45.91742	positive	MGI_C57BL6J_1917459	Tmem143	NCBI_Gene:70209,ENSEMBL:ENSMUSG00000002781	MGI:1917459	protein coding gene	transmembrane protein 143
7	gene	45.91802	45.92143	negative	MGI_C57BL6J_1098729	Emp3	NCBI_Gene:13732,ENSEMBL:ENSMUSG00000040212	MGI:1098729	protein coding gene	epithelial membrane protein 3
7	gene	45.92222	45.92417	negative	MGI_C57BL6J_5791278	Gm45442	ENSEMBL:ENSMUSG00000110208	MGI:5791278	lncRNA gene	predicted gene 45442
7	gene	45.92316	45.94896	positive	MGI_C57BL6J_2446120	Ccdc114	NCBI_Gene:211535,ENSEMBL:ENSMUSG00000040189	MGI:2446120	protein coding gene	coiled-coil domain containing 114
7	pseudogene	45.93379	45.93428	positive	MGI_C57BL6J_3780120	Gm9712	NCBI_Gene:677321,ENSEMBL:ENSMUSG00000109673	MGI:3780120	pseudogene	predicted gene 9712
7	gene	45.96349	45.97122	negative	MGI_C57BL6J_5825620	Gm45983	NCBI_Gene:108167424	MGI:5825620	lncRNA gene	predicted gene, 45983
7	gene	45.96755	46.03049	negative	MGI_C57BL6J_1351634	Abcc6	NCBI_Gene:27421,ENSEMBL:ENSMUSG00000030834	MGI:1351634	protein coding gene	ATP-binding cassette, sub-family C (CFTR/MRP), member 6
7	pseudogene	45.97241	45.97399	positive	MGI_C57BL6J_5791510	Gm45674	ENSEMBL:ENSMUSG00000109702	MGI:5791510	pseudogene	predicted gene 45674
7	gene	46.03370	46.08421	positive	MGI_C57BL6J_2385850	Nomo1	NCBI_Gene:211548,ENSEMBL:ENSMUSG00000030835	MGI:2385850	protein coding gene	nodal modulator 1
7	gene	46.04158	46.04242	positive	MGI_C57BL6J_5621895	Gm39010	NCBI_Gene:105242938	MGI:5621895	lncRNA gene	predicted gene, 39010
7	pseudogene	46.09190	46.09296	negative	MGI_C57BL6J_5010891	Gm18706	NCBI_Gene:100417597,ENSEMBL:ENSMUSG00000109882	MGI:5010891	pseudogene	predicted gene, 18706
7	gene	46.09395	46.10087	negative	MGI_C57BL6J_107501	Kcnj11	NCBI_Gene:16514,ENSEMBL:ENSMUSG00000096146	MGI:107501	protein coding gene	potassium inwardly rectifying channel, subfamily J, member 11
7	gene	46.10452	46.18004	negative	MGI_C57BL6J_1352629	Abcc8	NCBI_Gene:20927,ENSEMBL:ENSMUSG00000040136	MGI:1352629	protein coding gene	ATP-binding cassette, sub-family C (CFTR/MRP), member 8
7	gene	46.11154	46.11208	negative	MGI_C57BL6J_5791323	Gm45487	ENSEMBL:ENSMUSG00000110146	MGI:5791323	unclassified gene	predicted gene 45487
7	gene	46.12335	46.13057	positive	MGI_C57BL6J_5791322	Gm45486	ENSEMBL:ENSMUSG00000110240	MGI:5791322	lncRNA gene	predicted gene 45486
7	gene	46.19535	46.23850	negative	MGI_C57BL6J_1919338	Ush1c	NCBI_Gene:72088,ENSEMBL:ENSMUSG00000030838	MGI:1919338	protein coding gene	USH1 protein network component harmonin
7	gene	46.20455	46.20820	positive	MGI_C57BL6J_3642591	Gm9860	ENSEMBL:ENSMUSG00000110060	MGI:3642591	unclassified gene	predicted gene 9860
7	gene	46.24099	46.31143	positive	MGI_C57BL6J_1202064	Otog	NCBI_Gene:18419,ENSEMBL:ENSMUSG00000009487	MGI:1202064	protein coding gene	otogelin
7	gene	46.34577	46.34937	negative	MGI_C57BL6J_1914183	1700025L06Rik	ENSEMBL:ENSMUSG00000109962	MGI:1914183	lncRNA gene	RIKEN cDNA 1700025L06 gene
7	gene	46.37140	46.37249	positive	MGI_C57BL6J_5825560	Gm45923	NCBI_Gene:105447647	MGI:5825560	lncRNA gene	predicted gene, 45923
7	gene	46.37647	46.37910	positive	MGI_C57BL6J_97275	Myod1	NCBI_Gene:17927,ENSEMBL:ENSMUSG00000009471	MGI:97275	protein coding gene	myogenic differentiation 1
7	gene	46.39646	46.43871	positive	MGI_C57BL6J_96667	Kcnc1	NCBI_Gene:16502,ENSEMBL:ENSMUSG00000058975	MGI:96667	protein coding gene	potassium voltage gated channel, Shaw-related subfamily, member 1
7	gene	46.44038	46.44071	negative	MGI_C57BL6J_1923976	1700121F22Rik	NA	NA	unclassified gene	RIKEN cDNA 1700121F22 gene
7	gene	46.44124	46.44218	positive	MGI_C57BL6J_5825621	Gm45984	NCBI_Gene:108167425	MGI:5825621	lncRNA gene	predicted gene, 45984
7	gene	46.44315	46.63981	negative	MGI_C57BL6J_1351630	Sergef	NCBI_Gene:27414,ENSEMBL:ENSMUSG00000030839	MGI:1351630	protein coding gene	secretion regulating guanine nucleotide exchange factor
7	gene	46.45041	46.45052	positive	MGI_C57BL6J_5452746	Gm22969	ENSEMBL:ENSMUSG00000094229	MGI:5452746	snRNA gene	predicted gene, 22969
7	gene	46.51145	46.51278	negative	MGI_C57BL6J_5791147	Gm45311	ENSEMBL:ENSMUSG00000110316	MGI:5791147	lncRNA gene	predicted gene 45311
7	gene	46.56130	46.57820	positive	MGI_C57BL6J_3783140	Gm15700	ENSEMBL:ENSMUSG00000087492	MGI:3783140	lncRNA gene	predicted gene 15700
7	gene	46.56145	46.56173	negative	MGI_C57BL6J_5791146	Gm45310	ENSEMBL:ENSMUSG00000110272	MGI:5791146	unclassified gene	predicted gene 45310
7	gene	46.64464	46.67254	negative	MGI_C57BL6J_98796	Tph1	NCBI_Gene:21990,ENSEMBL:ENSMUSG00000040046	MGI:98796	protein coding gene	tryptophan hydroxylase 1
7	gene	46.68284	46.68538	negative	MGI_C57BL6J_5791465	Gm45629	ENSEMBL:ENSMUSG00000110010	MGI:5791465	unclassified gene	predicted gene 45629
7	gene	46.68611	46.71069	negative	MGI_C57BL6J_1926185	Saal1	NCBI_Gene:78935,ENSEMBL:ENSMUSG00000006763	MGI:1926185	protein coding gene	serum amyloid A-like 1
7	gene	46.71200	46.71570	negative	MGI_C57BL6J_98223	Saa3	NCBI_Gene:20210,ENSEMBL:ENSMUSG00000040026	MGI:98223	protein coding gene	serum amyloid A 3
7	gene	46.71889	46.72132	positive	MGI_C57BL6J_5591041	Gm31882	NCBI_Gene:102634252	MGI:5591041	lncRNA gene	predicted gene, 31882
7	gene	46.72800	46.73260	negative	MGI_C57BL6J_98224	Saa4	NCBI_Gene:20211,ENSEMBL:ENSMUSG00000040017	MGI:98224	protein coding gene	serum amyloid A 4
7	pseudogene	46.73469	46.73667	negative	MGI_C57BL6J_108518	Saa-ps	NCBI_Gene:20207,ENSEMBL:ENSMUSG00000109624	MGI:108518	pseudogene	serum amyloid A, pseudogene
7	gene	46.74050	46.74307	negative	MGI_C57BL6J_98221	Saa1	NCBI_Gene:20208,ENSEMBL:ENSMUSG00000074115	MGI:98221	protein coding gene	serum amyloid A 1
7	gene	46.75177	46.75431	positive	MGI_C57BL6J_98222	Saa2	NCBI_Gene:20209,ENSEMBL:ENSMUSG00000057465	MGI:98222	protein coding gene	serum amyloid A 2
7	gene	46.76047	46.79606	negative	MGI_C57BL6J_2180307	Hps5	NCBI_Gene:246694,ENSEMBL:ENSMUSG00000014418	MGI:2180307	protein coding gene	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
7	gene	46.78475	46.78555	negative	MGI_C57BL6J_5791145	Gm45309	ENSEMBL:ENSMUSG00000110087	MGI:5791145	lncRNA gene	predicted gene 45309
7	gene	46.79609	46.82380	positive	MGI_C57BL6J_1277216	Gtf2h1	NCBI_Gene:14884,ENSEMBL:ENSMUSG00000006599	MGI:1277216	protein coding gene	general transcription factor II H, polypeptide 1
7	pseudogene	46.82017	46.82150	negative	MGI_C57BL6J_3643262	Gm9392	NCBI_Gene:668838,ENSEMBL:ENSMUSG00000087298	MGI:3643262	pseudogene	predicted pseudogene 9392
7	pseudogene	46.83242	46.83933	positive	MGI_C57BL6J_3647739	Gm5331	NCBI_Gene:384622	MGI:3647739	pseudogene	predicted gene 5331
7	pseudogene	46.83246	46.83288	positive	MGI_C57BL6J_5791144	Gm45308	ENSEMBL:ENSMUSG00000109663	MGI:5791144	pseudogene	predicted gene 45308
7	gene	46.84148	46.85563	positive	MGI_C57BL6J_96759	Ldha	NCBI_Gene:16828,ENSEMBL:ENSMUSG00000063229	MGI:96759	protein coding gene	lactate dehydrogenase A
7	gene	46.85551	46.86123	negative	MGI_C57BL6J_5621896	Gm39011	NCBI_Gene:105242939	MGI:5621896	lncRNA gene	predicted gene, 39011
7	gene	46.86120	46.87814	positive	MGI_C57BL6J_96764	Ldhc	NCBI_Gene:16833,ENSEMBL:ENSMUSG00000030851	MGI:96764	protein coding gene	lactate dehydrogenase C
7	gene	46.88895	46.91997	negative	MGI_C57BL6J_106581	Tsg101	NCBI_Gene:22088,ENSEMBL:ENSMUSG00000014402	MGI:106581	protein coding gene	tumor susceptibility gene 101
7	pseudogene	46.91599	46.91626	positive	MGI_C57BL6J_5791464	Gm45628	ENSEMBL:ENSMUSG00000110213	MGI:5791464	pseudogene	predicted gene 45628
7	gene	46.92322	46.95853	negative	MGI_C57BL6J_1860490	Uevld	NCBI_Gene:54122,ENSEMBL:ENSMUSG00000043262	MGI:1860490	protein coding gene	UEV and lactate/malate dehyrogenase domains
7	gene	46.92781	46.92942	negative	MGI_C57BL6J_5804852	Gm45737	ENSEMBL:ENSMUSG00000109231	MGI:5804852	unclassified gene	predicted gene 45737
7	gene	46.95754	46.97030	positive	MGI_C57BL6J_5621897	Gm39012	NCBI_Gene:105242940	MGI:5621897	lncRNA gene	predicted gene, 39012
7	pseudogene	46.96715	46.96762	positive	MGI_C57BL6J_5011433	Gm19248	NCBI_Gene:100462932,ENSEMBL:ENSMUSG00000110416	MGI:5011433	pseudogene	predicted gene, 19248
7	gene	46.96771	46.97591	negative	MGI_C57BL6J_2142361	C86187	NCBI_Gene:97402,ENSEMBL:ENSMUSG00000110001	MGI:2142361	lncRNA gene	expressed sequence C86187
7	pseudogene	46.97528	46.97577	positive	MGI_C57BL6J_5591100	Gm31941	NCBI_Gene:102634334,ENSEMBL:ENSMUSG00000109637	MGI:5591100	pseudogene	predicted gene, 31941
7	gene	46.97663	46.98780	positive	MGI_C57BL6J_3642801	Gm9999	NCBI_Gene:629141,ENSEMBL:ENSMUSG00000056509	MGI:3642801	protein coding gene	predicted gene 9999
7	gene	46.99040	47.00841	negative	MGI_C57BL6J_2142062	Spty2d1	NCBI_Gene:101685,ENSEMBL:ENSMUSG00000049516	MGI:2142062	protein coding gene	SPT2 chromatin protein domain containing 1
7	gene	47.00808	47.00901	positive	MGI_C57BL6J_5591190	Gm32031	NCBI_Gene:102634450,ENSEMBL:ENSMUSG00000109118	MGI:5591190	lncRNA gene	predicted gene, 32031
7	gene	47.04989	47.05030	negative	MGI_C57BL6J_5791310	Gm45474	ENSEMBL:ENSMUSG00000109634	MGI:5791310	lncRNA gene	predicted gene 45474
7	gene	47.05060	47.05478	positive	MGI_C57BL6J_1915143	Tmem86a	NCBI_Gene:67893,ENSEMBL:ENSMUSG00000010307	MGI:1915143	protein coding gene	transmembrane protein 86A
7	pseudogene	47.05735	47.07563	negative	MGI_C57BL6J_5593086	LOC102637012	NCBI_Gene:102637012,ENSEMBL:ENSMUSG00000111473	MGI:5593086	pseudogene	immunoglobulin superfamily member 22-like
7	gene	47.07780	47.13370	negative	MGI_C57BL6J_97807	Ptpn5	NCBI_Gene:19259,ENSEMBL:ENSMUSG00000030854	MGI:97807	protein coding gene	protein tyrosine phosphatase, non-receptor type 5
7	gene	47.08317	47.08322	negative	MGI_C57BL6J_5531078	Mir7056	miRBase:MI0022905,NCBI_Gene:102465639,ENSEMBL:ENSMUSG00000098960	MGI:5531078	miRNA gene	microRNA 7056
7	gene	47.10871	47.12599	positive	MGI_C57BL6J_3651179	Gm14377	NCBI_Gene:102634561,ENSEMBL:ENSMUSG00000109501	MGI:3651179	lncRNA gene	predicted gene 14377
7	gene	47.14216	47.14432	negative	MGI_C57BL6J_5753545	Gm44969	ENSEMBL:ENSMUSG00000109200	MGI:5753545	lncRNA gene	predicted gene 44969
7	gene	47.18571	47.20492	negative	MGI_C57BL6J_3033107	Mrgpra6	NCBI_Gene:381886,ENSEMBL:ENSMUSG00000052303	MGI:3033107	protein coding gene	MAS-related GPR, member A6
7	pseudogene	47.21268	47.21341	negative	MGI_C57BL6J_5010532	Gm18347	NCBI_Gene:100416984	MGI:5010532	pseudogene	predicted gene, 18347
7	gene	47.23486	47.25285	negative	MGI_C57BL6J_3033148	Mrgpra9	NCBI_Gene:668725,ENSEMBL:ENSMUSG00000074111	MGI:3033148	protein coding gene	MAS-related GPR, member A9
7	pseudogene	47.30933	47.31034	negative	MGI_C57BL6J_2685506	Mrgprx3-ps	NCBI_Gene:100502859,ENSEMBL:ENSMUSG00000099560	MGI:2685506	pseudogene	MAS-related GPR, member X3, pseudogene
7	gene	47.33487	47.35424	negative	MGI_C57BL6J_3033095	Mrgpra1	NCBI_Gene:233221,ENSEMBL:ENSMUSG00000050650	MGI:3033095	protein coding gene	MAS-related GPR, member A1
7	pseudogene	47.34945	47.34989	positive	MGI_C57BL6J_5753661	Gm45085	ENSEMBL:ENSMUSG00000109164	MGI:5753661	pseudogene	predicted gene 45085
7	pseudogene	47.39062	47.39107	negative	MGI_C57BL6J_5580185	Gm29479	ENSEMBL:ENSMUSG00000100470	MGI:5580185	pseudogene	predicted gene 29479
7	gene	47.41383	47.41394	positive	MGI_C57BL6J_5455103	Gm25326	ENSEMBL:ENSMUSG00000095085	MGI:5455103	snRNA gene	predicted gene, 25326
7	gene	47.42632	47.45217	negative	MGI_C57BL6J_3821888	Mrgpra2a	NCBI_Gene:668727,ENSEMBL:ENSMUSG00000093973	MGI:3821888	protein coding gene	MAS-related GPR, member A2A
7	gene	47.46380	47.52886	negative	MGI_C57BL6J_3033098	Mrgpra2b	NCBI_Gene:235712,ENSEMBL:ENSMUSG00000096719	MGI:3033098	protein coding gene	MAS-related GPR, member A2B
7	pseudogene	47.50245	47.53178	negative	MGI_C57BL6J_3779706	Gm7255	NCBI_Gene:638950,ENSEMBL:ENSMUSG00000101780	MGI:3779706	pseudogene	predicted gene 7255
7	pseudogene	47.53919	47.54025	negative	MGI_C57BL6J_3033197	Mrgprc4-ps	NCBI_Gene:404257,ENSEMBL:ENSMUSG00000101944	MGI:3033197	pseudogene	MAS-related GPR, member C4, pseudogene
7	pseudogene	47.55537	47.55631	negative	MGI_C57BL6J_3780126	Gm9717	NCBI_Gene:677457	MGI:3780126	pseudogene	predicted gene 9717
7	gene	47.55538	47.55629	negative	MGI_C57BL6J_3033168	Mrgpra14	ENSEMBL:ENSMUSG00000101664	MGI:3033168	protein coding gene	MAS-related GPR, member A14
7	pseudogene	47.56532	47.56630	negative	MGI_C57BL6J_3644993	Gm9322	NCBI_Gene:668729,ENSEMBL:ENSMUSG00000099659	MGI:3644993	pseudogene	predicted gene 9322
7	gene	47.58895	47.60137	negative	MGI_C57BL6J_2684085	Mrgpra3	NCBI_Gene:233222,ENSEMBL:ENSMUSG00000078698	MGI:2684085	protein coding gene	MAS-related GPR, member A3
7	pseudogene	47.61132	47.61237	negative	MGI_C57BL6J_3033136	Mrgprc1-ps	NCBI_Gene:269921,ENSEMBL:ENSMUSG00000100665	MGI:3033136	pseudogene	MAS-related GPR, member C1, pseudogene
7	pseudogene	47.66809	47.66882	negative	MGI_C57BL6J_3780876	Gm2707	NCBI_Gene:100040314,ENSEMBL:ENSMUSG00000101087	MGI:3780876	pseudogene	predicted gene 2707
7	pseudogene	47.70866	47.70888	negative	MGI_C57BL6J_5578994	Gm28288	ENSEMBL:ENSMUSG00000101817	MGI:5578994	pseudogene	predicted gene 28288
7	pseudogene	47.71850	47.71955	negative	MGI_C57BL6J_3033196	Mrgprc3-ps	NCBI_Gene:404256,ENSEMBL:ENSMUSG00000099603	MGI:3033196	pseudogene	MAS-related GPR, member C3, pseudogene
7	pseudogene	47.73300	47.73394	negative	MGI_C57BL6J_3642992	Gm5733	NCBI_Gene:435977,ENSEMBL:ENSMUSG00000101739	MGI:3642992	pseudogene	predicted gene 5733
7	gene	47.75272	47.75283	positive	MGI_C57BL6J_5452204	Gm22427	ENSEMBL:ENSMUSG00000077110	MGI:5452204	miRNA gene	predicted gene, 22427
7	pseudogene	47.76283	47.76368	negative	MGI_C57BL6J_5010533	Gm18348	NCBI_Gene:100416987,ENSEMBL:ENSMUSG00000100920	MGI:5010533	pseudogene	predicted gene, 18348
7	pseudogene	47.77572	47.77621	negative	MGI_C57BL6J_5580269	Gm29563	ENSEMBL:ENSMUSG00000102109	MGI:5580269	pseudogene	predicted gene 29563
7	pseudogene	47.80998	47.81137	positive	MGI_C57BL6J_3033141	Mrgprc7-ps	NCBI_Gene:404255,ENSEMBL:ENSMUSG00000102068	MGI:3033141	pseudogene	MAS-related GPR, member C7, pseudogene
7	gene	47.82288	47.83936	negative	MGI_C57BL6J_3033174	Mrgpra16	NA	NA	protein coding gene	MAS-related GPR%2c member A16
7	pseudogene	47.82334	47.82427	negative	MGI_C57BL6J_5010534	Gm18349	NCBI_Gene:100416988,ENSEMBL:ENSMUSG00000102128	MGI:5010534	pseudogene	predicted gene, 18349
7	pseudogene	47.87108	47.87253	negative	MGI_C57BL6J_3033177	Mrgpra18-ps	NCBI_Gene:404262,ENSEMBL:ENSMUSG00000101622	MGI:3033177	pseudogene	MAS-related GPR, member A18, pseudogene
7	pseudogene	47.88653	47.88757	negative	MGI_C57BL6J_5010535	Gm18350	NCBI_Gene:100416990,ENSEMBL:ENSMUSG00000101101	MGI:5010535	pseudogene	predicted gene, 18350
7	pseudogene	47.91532	47.91626	negative	MGI_C57BL6J_3647104	Gm5734	NCBI_Gene:435978,ENSEMBL:ENSMUSG00000101759	MGI:3647104	pseudogene	predicted gene 5734
7	pseudogene	47.96668	47.96825	negative	MGI_C57BL6J_3033137	Mrgprc2-ps	NCBI_Gene:404254,ENSEMBL:ENSMUSG00000101906	MGI:3033137	pseudogene	MAS-related GPR, member C2, pseudogene
7	gene	47.98079	47.98230	negative	MGI_C57BL6J_3033100	Mrgpra4	NCBI_Gene:235854,ENSEMBL:ENSMUSG00000067173	MGI:3033100	protein coding gene	MAS-related GPR, member A4
7	gene	48.02097	48.02760	negative	MGI_C57BL6J_3033139	Mrgprx1	NCBI_Gene:404242,ENSEMBL:ENSMUSG00000070552	MGI:3033139	protein coding gene	MAS-related GPR, member X1
7	pseudogene	48.06362	48.06498	negative	MGI_C57BL6J_3033123	Mrgprb7-ps	NCBI_Gene:404252,ENSEMBL:ENSMUSG00000101063	MGI:3033123	pseudogene	MAS-related GPR, member B7, pseudogene
7	pseudogene	48.09512	48.09539	negative	MGI_C57BL6J_5579372	Gm28666	ENSEMBL:ENSMUSG00000102003	MGI:5579372	pseudogene	predicted gene 28666
7	pseudogene	48.09647	48.09742	positive	MGI_C57BL6J_3033192	Mrgprb12-ps	NCBI_Gene:404264,ENSEMBL:ENSMUSG00000101900	MGI:3033192	pseudogene	MAS-related GPR, member B12, pseudogene
7	pseudogene	48.10885	48.10973	negative	MGI_C57BL6J_5010536	Gm18351	NCBI_Gene:100416993,ENSEMBL:ENSMUSG00000102100	MGI:5010536	pseudogene	predicted gene, 18351
7	pseudogene	48.11677	48.11744	negative	MGI_C57BL6J_5579371	Gm28665	ENSEMBL:ENSMUSG00000101352	MGI:5579371	pseudogene	predicted gene 28665
7	gene	48.13842	48.13856	negative	MGI_C57BL6J_1925576	2700078K13Rik	NA	NA	unclassified gene	RIKEN cDNA 2700078K13 gene
7	gene	48.16798	48.16902	negative	MGI_C57BL6J_3033121	Mrgprb5	NCBI_Gene:404239,ENSEMBL:ENSMUSG00000070551	MGI:3033121	protein coding gene	MAS-related GPR, member B5
7	pseudogene	48.18180	48.18314	negative	MGI_C57BL6J_5010537	Gm18352	NCBI_Gene:100416994,ENSEMBL:ENSMUSG00000101543	MGI:5010537	pseudogene	predicted gene, 18352
7	gene	48.19807	48.19929	negative	MGI_C57BL6J_3033119	Mrgprb4	NCBI_Gene:233230,ENSEMBL:ENSMUSG00000070550	MGI:3033119	protein coding gene	MAS-related GPR, member B4
7	pseudogene	48.22020	48.22084	negative	MGI_C57BL6J_5504065	Gm26950	ENSEMBL:ENSMUSG00000097955	MGI:5504065	pseudogene	predicted gene, 26950
7	pseudogene	48.29319	48.29482	positive	MGI_C57BL6J_5010541	Gm18356	NCBI_Gene:100417005,ENSEMBL:ENSMUSG00000099952	MGI:5010541	pseudogene	predicted gene, 18356
7	gene	48.31130	48.31232	positive	MGI_C57BL6J_3033193	Mrgprb13	NCBI_Gene:620137,ENSEMBL:ENSMUSG00000099620	MGI:3033193	protein coding gene	MAS-related GPR, member B13
7	pseudogene	48.36392	48.36450	positive	MGI_C57BL6J_5010542	Gm18357	NCBI_Gene:100417006,ENSEMBL:ENSMUSG00000100687	MGI:5010542	pseudogene	predicted gene, 18357
7	gene	48.38853	48.38965	positive	MGI_C57BL6J_3033134	Mrgprb8	NCBI_Gene:404240,ENSEMBL:ENSMUSG00000050870	MGI:3033134	protein coding gene	MAS-related GPR, member B8
7	gene	48.44411	48.45634	negative	MGI_C57BL6J_3033115	Mrgprb1	NCBI_Gene:233231,ENSEMBL:ENSMUSG00000070547	MGI:3033115	protein coding gene	MAS-related GPR, member B1
7	gene	48.47862	48.49932	negative	MGI_C57BL6J_3588270	Mrgprx2	NCBI_Gene:243978,ENSEMBL:ENSMUSG00000074109	MGI:3588270	protein coding gene	MAS-related GPR, member X2
7	gene	48.55096	48.55809	negative	MGI_C57BL6J_2441674	Mrgprb2	NCBI_Gene:243979,ENSEMBL:ENSMUSG00000050425	MGI:2441674	protein coding gene	MAS-related GPR, member B2
7	pseudogene	48.59066	48.59198	positive	MGI_C57BL6J_3033133	Mrgprb9-ps	NCBI_Gene:404253,ENSEMBL:ENSMUSG00000101362	MGI:3033133	pseudogene	MAS-related GPR, member B9, pseudogene
7	pseudogene	48.60955	48.61043	negative	MGI_C57BL6J_5010538	Gm18353	NCBI_Gene:100416995,ENSEMBL:ENSMUSG00000100250	MGI:5010538	pseudogene	predicted gene, 18353
7	gene	48.64280	48.64381	negative	MGI_C57BL6J_3033117	Mrgprb3	NCBI_Gene:404238,ENSEMBL:ENSMUSG00000070546	MGI:3033117	protein coding gene	MAS-related GPR, member B3
7	pseudogene	48.68462	48.68561	negative	MGI_C57BL6J_3033189	Mrgprb11-ps	NCBI_Gene:639116,ENSEMBL:ENSMUSG00000099889	MGI:3033189	pseudogene	MAS-related GPR, member B11, pseudogene
7	gene	48.72015	48.74819	negative	MGI_C57BL6J_5753662	Gm45086	NCBI_Gene:108167426,ENSEMBL:ENSMUSG00000109170	MGI:5753662	lncRNA gene	predicted gene 45086
7	gene	48.75514	48.76832	negative	MGI_C57BL6J_5591422	Gm32263	NCBI_Gene:102634757	MGI:5591422	lncRNA gene	predicted gene, 32263
7	gene	48.78900	48.82744	positive	MGI_C57BL6J_1919227	Zdhhc13	NCBI_Gene:243983,ENSEMBL:ENSMUSG00000030471	MGI:1919227	protein coding gene	zinc finger, DHHC domain containing 13
7	gene	48.79630	48.79941	positive	MGI_C57BL6J_5753617	Gm45041	ENSEMBL:ENSMUSG00000109317	MGI:5753617	unclassified gene	predicted gene 45041
7	gene	48.83040	48.84805	negative	MGI_C57BL6J_1330824	Csrp3	NCBI_Gene:13009,ENSEMBL:ENSMUSG00000030470	MGI:1330824	protein coding gene	cysteine and glycine-rich protein 3
7	gene	48.86643	48.88207	negative	MGI_C57BL6J_1922038	E2f8	NCBI_Gene:108961,ENSEMBL:ENSMUSG00000046179	MGI:1922038	protein coding gene	E2F transcription factor 8
7	gene	48.87796	48.91304	positive	MGI_C57BL6J_3780956	Gm2788	NCBI_Gene:108167326,ENSEMBL:ENSMUSG00000085995	MGI:3780956	lncRNA gene	predicted gene 2788
7	gene	48.89368	48.91006	negative	MGI_C57BL6J_5791118	Gm45282	ENSEMBL:ENSMUSG00000110093	MGI:5791118	lncRNA gene	predicted gene 45282
7	gene	48.90872	49.61009	positive	MGI_C57BL6J_2183691	Nav2	NCBI_Gene:78286,ENSEMBL:ENSMUSG00000052512	MGI:2183691	protein coding gene	neuron navigator 2
7	pseudogene	48.93951	48.94014	negative	MGI_C57BL6J_5010744	Gm18559	NCBI_Gene:100417360,ENSEMBL:ENSMUSG00000109507	MGI:5010744	pseudogene	predicted gene, 18559
7	pseudogene	49.06244	49.06258	negative	MGI_C57BL6J_5753783	Gm45207	ENSEMBL:ENSMUSG00000109068	MGI:5753783	pseudogene	predicted gene 45207
7	gene	49.07327	49.09323	positive	MGI_C57BL6J_5592008	Gm32849	NCBI_Gene:102635541,ENSEMBL:ENSMUSG00000109203	MGI:5592008	lncRNA gene	predicted gene, 32849
7	gene	49.12194	49.16558	negative	MGI_C57BL6J_1921817	9130015G15Rik	NCBI_Gene:108167511,ENSEMBL:ENSMUSG00000108950	MGI:1921817	lncRNA gene	RIKEN cDNA 9130015G15 gene
7	gene	49.19554	49.19912	positive	MGI_C57BL6J_5610841	Gm37613	ENSEMBL:ENSMUSG00000103834	MGI:5610841	unclassified gene	predicted gene, 37613
7	gene	49.34609	49.34908	positive	MGI_C57BL6J_5753489	Gm44913	ENSEMBL:ENSMUSG00000109051	MGI:5753489	unclassified gene	predicted gene 44913
7	gene	49.46971	49.47171	positive	MGI_C57BL6J_5611287	Gm38059	ENSEMBL:ENSMUSG00000102148	MGI:5611287	unclassified gene	predicted gene, 38059
7	gene	49.55389	49.55673	positive	MGI_C57BL6J_2445080	E430014L09Rik	NA	NA	unclassified gene	RIKEN cDNA E430014L09 gene
7	gene	49.56180	49.56369	positive	MGI_C57BL6J_5591853	Gm32694	NCBI_Gene:102635323	MGI:5591853	lncRNA gene	predicted gene, 32694
7	gene	49.63150	49.63685	negative	MGI_C57BL6J_94867	Dbx1	NCBI_Gene:13172,ENSEMBL:ENSMUSG00000030507	MGI:94867	protein coding gene	developing brain homeobox 1
7	gene	49.63986	49.64899	positive	MGI_C57BL6J_5825622	Gm45985	NCBI_Gene:108167427	MGI:5825622	lncRNA gene	predicted gene, 45985
7	gene	49.75285	49.75616	positive	MGI_C57BL6J_5592121	Gm32962	NCBI_Gene:102635687	MGI:5592121	lncRNA gene	predicted gene, 32962
7	gene	49.75904	49.77836	positive	MGI_C57BL6J_1859271	Htatip2	NCBI_Gene:53415,ENSEMBL:ENSMUSG00000039745	MGI:1859271	protein coding gene	HIV-1 Tat interactive protein 2
7	gene	49.76363	49.77016	positive	MGI_C57BL6J_5825623	Gm45986	NCBI_Gene:108167428	MGI:5825623	lncRNA gene	predicted gene, 45986
7	gene	49.77835	49.85827	positive	MGI_C57BL6J_1919224	Prmt3	NCBI_Gene:71974,ENSEMBL:ENSMUSG00000030505	MGI:1919224	protein coding gene	protein arginine N-methyltransferase 3
7	gene	49.79596	49.79671	positive	MGI_C57BL6J_1925801	5430407F15Rik	NA	NA	unclassified gene	RIKEN cDNA 5430407F15 gene
7	gene	49.81420	49.82059	positive	MGI_C57BL6J_5753398	Gm44822	ENSEMBL:ENSMUSG00000109154	MGI:5753398	unclassified gene	predicted gene 44822
7	gene	49.85616	49.85760	negative	MGI_C57BL6J_5477350	Gm26856	ENSEMBL:ENSMUSG00000097864	MGI:5477350	lncRNA gene	predicted gene, 26856
7	gene	49.86125	49.86637	positive	MGI_C57BL6J_1924768	9330179C17Rik	NA	NA	unclassified gene	RIKEN cDNA 9330179C17 gene
7	gene	49.90697	49.96386	positive	MGI_C57BL6J_105090	Slc6a5	NCBI_Gene:104245,ENSEMBL:ENSMUSG00000039728	MGI:105090	protein coding gene	solute carrier family 6 (neurotransmitter transporter, glycine), member 5
7	gene	49.97486	50.86661	positive	MGI_C57BL6J_2443902	Nell1	NCBI_Gene:338352,ENSEMBL:ENSMUSG00000055409	MGI:2443902	protein coding gene	NEL-like 1
7	gene	50.51731	50.57597	negative	MGI_C57BL6J_1920765	Nell1os	NCBI_Gene:73515,ENSEMBL:ENSMUSG00000085265	MGI:1920765	antisense lncRNA gene	NEL-like 1, opposite strand
7	gene	50.59919	50.60053	positive	MGI_C57BL6J_2142174	4933405O20Rik	NCBI_Gene:243996,ENSEMBL:ENSMUSG00000084234	MGI:2142174	protein coding gene	RIKEN cDNA 4933405O20 gene
7	pseudogene	50.94054	50.94315	negative	MGI_C57BL6J_3645198	Gm9343	NCBI_Gene:100534340,ENSEMBL:ENSMUSG00000109409	MGI:3645198	pseudogene	predicted gene 9343
7	pseudogene	50.94929	50.95190	negative	MGI_C57BL6J_5434387	Gm21032	NCBI_Gene:100534341,ENSEMBL:ENSMUSG00000108958	MGI:5434387	pseudogene	predicted gene, 21032
7	pseudogene	50.95803	50.96065	negative	MGI_C57BL6J_5434388	Gm21033	NCBI_Gene:100534342,ENSEMBL:ENSMUSG00000109494	MGI:5434388	pseudogene	predicted gene, 21033
7	pseudogene	50.96679	50.96940	negative	MGI_C57BL6J_5434389	Gm21034	NCBI_Gene:100534343,ENSEMBL:ENSMUSG00000109476	MGI:5434389	pseudogene	predicted gene, 21034
7	pseudogene	50.97554	50.97816	negative	MGI_C57BL6J_5434390	Gm21035	NCBI_Gene:100534344,ENSEMBL:ENSMUSG00000109172	MGI:5434390	pseudogene	predicted gene, 21035
7	pseudogene	50.98429	50.98691	negative	MGI_C57BL6J_5434391	Gm21036	NCBI_Gene:100534345,ENSEMBL:ENSMUSG00000109173	MGI:5434391	pseudogene	predicted gene, 21036
7	pseudogene	51.15281	51.15542	negative	MGI_C57BL6J_5434392	Gm21037	NCBI_Gene:100534346,ENSEMBL:ENSMUSG00000109202	MGI:5434392	pseudogene	predicted gene, 21037
7	pseudogene	51.17048	51.17715	positive	MGI_C57BL6J_3648411	Gm16478	NCBI_Gene:434186,ENSEMBL:ENSMUSG00000108963	MGI:3648411	pseudogene	predicted pseudogene 16478
7	pseudogene	51.39483	51.39495	positive	MGI_C57BL6J_5753578	Gm45002	ENSEMBL:ENSMUSG00000109443	MGI:5753578	pseudogene	predicted gene 45002
7	gene	51.44189	51.44407	negative	MGI_C57BL6J_5592174	Gm33015	NCBI_Gene:102635758	MGI:5592174	lncRNA gene	predicted gene, 33015
7	pseudogene	51.45799	51.45856	positive	MGI_C57BL6J_3647598	Gm9354	NCBI_Gene:668779,ENSEMBL:ENSMUSG00000109059	MGI:3647598	pseudogene	predicted gene 9354
7	gene	51.49680	51.57032	negative	MGI_C57BL6J_5592349	Gm33190	NCBI_Gene:102635994	MGI:5592349	lncRNA gene	predicted gene, 33190
7	gene	51.51002	51.59871	positive	MGI_C57BL6J_3576659	Ano5	NCBI_Gene:233246,ENSEMBL:ENSMUSG00000055489	MGI:3576659	protein coding gene	anoctamin 5
7	gene	51.62139	51.62432	negative	MGI_C57BL6J_5592295	Gm33136	NCBI_Gene:108167429	MGI:5592295	lncRNA gene	predicted gene, 33136
7	gene	51.62183	51.67113	positive	MGI_C57BL6J_2156052	Slc17a6	NCBI_Gene:140919,ENSEMBL:ENSMUSG00000030500	MGI:2156052	protein coding gene	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
7	gene	51.63173	51.63265	positive	MGI_C57BL6J_5753648	Gm45072	ENSEMBL:ENSMUSG00000109437	MGI:5753648	unclassified gene	predicted gene 45072
7	pseudogene	51.69791	51.69898	positive	MGI_C57BL6J_5625287	Gm42402	NCBI_Gene:105247274,ENSEMBL:ENSMUSG00000109331	MGI:5625287	pseudogene	predicted gene, 42402
7	pseudogene	51.74665	51.74790	positive	MGI_C57BL6J_3644851	Gm7336	NCBI_Gene:654473,ENSEMBL:ENSMUSG00000078636	MGI:3644851	pseudogene	predicted gene 7336
7	gene	51.75080	51.77273	negative	MGI_C57BL6J_5580002	Gm29296	ENSEMBL:ENSMUSG00000102124	MGI:5580002	lncRNA gene	predicted gene 29296
7	gene	51.77298	51.77778	positive	MGI_C57BL6J_5592449	Gm33290	NCBI_Gene:102636136	MGI:5592449	lncRNA gene	predicted gene, 33290
7	gene	51.85030	51.85282	positive	MGI_C57BL6J_5753577	Gm45001	ENSEMBL:ENSMUSG00000108842	MGI:5753577	unclassified gene	predicted gene 45001
7	gene	51.85558	51.86005	positive	MGI_C57BL6J_5753811	Gm45235	ENSEMBL:ENSMUSG00000108957	MGI:5753811	lncRNA gene	predicted gene 45235
7	gene	51.86058	51.86227	negative	MGI_C57BL6J_3689889	Fancf	NCBI_Gene:100040608,ENSEMBL:ENSMUSG00000092118	MGI:3689889	protein coding gene	Fanconi anemia, complementation group F
7	gene	51.86201	51.99500	positive	MGI_C57BL6J_95657	Gas2	NCBI_Gene:14453,ENSEMBL:ENSMUSG00000030498	MGI:95657	protein coding gene	growth arrest specific 2
7	gene	51.99716	52.00602	negative	MGI_C57BL6J_1922994	Svip	NCBI_Gene:75744,ENSEMBL:ENSMUSG00000074093	MGI:1922994	protein coding gene	small VCP/p97-interacting protein
7	gene	52.01168	52.01573	negative	MGI_C57BL6J_1922779	1700015G11Rik	NCBI_Gene:100503036,ENSEMBL:ENSMUSG00000094445	MGI:1922779	protein coding gene	RIKEN cDNA 1700015G11 gene
7	pseudogene	52.02206	52.02965	negative	MGI_C57BL6J_3643913	Gm9357	NCBI_Gene:668783,ENSEMBL:ENSMUSG00000109526	MGI:3643913	pseudogene	predicted gene 9357
7	gene	52.07542	52.07558	negative	MGI_C57BL6J_5451988	Gm22211	ENSEMBL:ENSMUSG00000088722	MGI:5451988	snRNA gene	predicted gene, 22211
7	pseudogene	52.21996	52.22044	positive	MGI_C57BL6J_5753259	Gm44683	ENSEMBL:ENSMUSG00000109026	MGI:5753259	pseudogene	predicted gene 44683
7	pseudogene	52.41145	52.41197	positive	MGI_C57BL6J_5012259	Gm20074	NCBI_Gene:100504123,ENSEMBL:ENSMUSG00000109099	MGI:5012259	pseudogene	predicted gene, 20074
7	pseudogene	52.75542	52.75583	positive	MGI_C57BL6J_3646422	Gm6181	NCBI_Gene:620782,ENSEMBL:ENSMUSG00000074092	MGI:3646422	pseudogene	predicted pseudogene 6181
7	gene	52.88759	52.97700	positive	MGI_C57BL6J_5593057	Gm33898	NCBI_Gene:102636974	MGI:5593057	lncRNA gene	predicted gene, 33898
7	gene	52.92707	52.92718	positive	MGI_C57BL6J_5452221	Gm22444	ENSEMBL:ENSMUSG00000070203	MGI:5452221	snRNA gene	predicted gene, 22444
7	pseudogene	52.99027	52.99100	negative	MGI_C57BL6J_5011091	Gm18906	NCBI_Gene:100417931	MGI:5011091	pseudogene	predicted gene, 18906
7	gene	53.63080	53.66079	negative	MGI_C57BL6J_5593149	Gm33990	NCBI_Gene:102637088	MGI:5593149	lncRNA gene	predicted gene, 33990
7	pseudogene	53.80327	53.80414	negative	MGI_C57BL6J_3643911	Gm9362	NCBI_Gene:668789	MGI:3643911	pseudogene	predicted gene 9362
7	gene	53.89176	53.89189	negative	MGI_C57BL6J_5531364	Mir6238	miRBase:MI0021585,NCBI_Gene:102466619,ENSEMBL:ENSMUSG00000099176	MGI:5531364	miRNA gene	microRNA 6238
7	gene	53.99594	53.99856	positive	MGI_C57BL6J_5753258	Gm44682	ENSEMBL:ENSMUSG00000109312	MGI:5753258	unclassified gene	predicted gene 44682
7	gene	54.00847	54.00858	negative	MGI_C57BL6J_5531303	Gm27921	ENSEMBL:ENSMUSG00000099089	MGI:5531303	miRNA gene	predicted gene, 27921
7	gene	54.21317	54.21339	negative	MGI_C57BL6J_5455733	Gm25956	ENSEMBL:ENSMUSG00000092856	MGI:5455733	miRNA gene	predicted gene, 25956
7	pseudogene	54.41191	54.41252	negative	MGI_C57BL6J_3647650	Gm5776	NCBI_Gene:497028,ENSEMBL:ENSMUSG00000099647	MGI:3647650	pseudogene	predicted gene 5776
7	pseudogene	54.57106	54.62498	negative	MGI_C57BL6J_3645757	Gm6290	NCBI_Gene:622146,ENSEMBL:ENSMUSG00000109050	MGI:3645757	pseudogene	predicted gene 6290
7	gene	54.83519	55.26889	positive	MGI_C57BL6J_1889615	Luzp2	NCBI_Gene:233271,ENSEMBL:ENSMUSG00000063297	MGI:1889615	protein coding gene	leucine zipper protein 2
7	gene	54.87611	54.87765	positive	MGI_C57BL6J_5753471	Gm44895	ENSEMBL:ENSMUSG00000108474	MGI:5753471	unclassified gene	predicted gene 44895
7	gene	54.88312	54.88446	positive	MGI_C57BL6J_5753473	Gm44897	ENSEMBL:ENSMUSG00000108665	MGI:5753473	unclassified gene	predicted gene 44897
7	gene	54.93178	54.93255	negative	MGI_C57BL6J_5753472	Gm44896	ENSEMBL:ENSMUSG00000108581	MGI:5753472	unclassified gene	predicted gene 44896
7	gene	55.02504	55.02721	positive	MGI_C57BL6J_5753470	Gm44894	ENSEMBL:ENSMUSG00000108756	MGI:5753470	unclassified gene	predicted gene 44894
7	gene	55.08860	55.08999	positive	MGI_C57BL6J_1921844	4833421K07Rik	ENSEMBL:ENSMUSG00000108519	MGI:1921844	unclassified gene	RIKEN cDNA 4833421K07 gene
7	pseudogene	55.24214	55.24394	negative	MGI_C57BL6J_5010023	Gm17838	NCBI_Gene:100415957,ENSEMBL:ENSMUSG00000108326	MGI:5010023	pseudogene	predicted gene, 17838
7	gene	55.24393	55.24404	negative	MGI_C57BL6J_5453893	Gm24116	ENSEMBL:ENSMUSG00000077163	MGI:5453893	snRNA gene	predicted gene, 24116
7	gene	55.27338	55.27670	positive	MGI_C57BL6J_5621899	Gm39014	NCBI_Gene:105242943	MGI:5621899	lncRNA gene	predicted gene, 39014
7	gene	55.27594	55.27816	positive	MGI_C57BL6J_5753474	Gm44898	ENSEMBL:ENSMUSG00000108325	MGI:5753474	unclassified gene	predicted gene 44898
7	pseudogene	55.46207	55.46261	positive	MGI_C57BL6J_3647838	Gm9367	NCBI_Gene:668796,ENSEMBL:ENSMUSG00000108744	MGI:3647838	pseudogene	predicted gene 9367
7	pseudogene	55.63645	55.63681	positive	MGI_C57BL6J_5753191	Gm44615	ENSEMBL:ENSMUSG00000108363	MGI:5753191	pseudogene	predicted gene 44615
7	gene	55.70215	55.70222	positive	MGI_C57BL6J_5456259	Gm26482	ENSEMBL:ENSMUSG00000088640	MGI:5456259	snRNA gene	predicted gene, 26482
7	gene	55.76509	55.76862	negative	MGI_C57BL6J_5621900	Gm39015	NCBI_Gene:105242944	MGI:5621900	lncRNA gene	predicted gene, 39015
7	gene	55.76814	55.77893	positive	MGI_C57BL6J_2443256	Siglech	NCBI_Gene:233274,ENSEMBL:ENSMUSG00000051504	MGI:2443256	protein coding gene	sialic acid binding Ig-like lectin H
7	gene	55.79413	55.83168	positive	MGI_C57BL6J_2178836	Tubgcp5	NCBI_Gene:233276,ENSEMBL:ENSMUSG00000033790	MGI:2178836	protein coding gene	tubulin, gamma complex associated protein 5
7	gene	55.84175	55.93263	positive	MGI_C57BL6J_1338801	Cyfip1	NCBI_Gene:20430,ENSEMBL:ENSMUSG00000030447	MGI:1338801	protein coding gene	cytoplasmic FMR1 interacting protein 1
7	pseudogene	55.90260	55.90331	negative	MGI_C57BL6J_5010092	Gm17907	NCBI_Gene:100416076,ENSEMBL:ENSMUSG00000092526	MGI:5010092	pseudogene	predicted gene, 17907
7	gene	55.92718	55.92891	negative	MGI_C57BL6J_5753192	Gm44616	ENSEMBL:ENSMUSG00000108701	MGI:5753192	unclassified gene	predicted gene 44616
7	gene	55.93127	55.96249	negative	MGI_C57BL6J_1913918	Nipa2	NCBI_Gene:93790,ENSEMBL:ENSMUSG00000030452	MGI:1913918	protein coding gene	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
7	gene	55.96253	55.98087	positive	MGI_C57BL6J_2444856	A230056P14Rik	NCBI_Gene:320845,ENSEMBL:ENSMUSG00000087178	MGI:2444856	lncRNA gene	RIKEN cDNA A230056P14 gene
7	gene	55.97352	55.97484	negative	MGI_C57BL6J_5753085	Gm44509	ENSEMBL:ENSMUSG00000108358	MGI:5753085	unclassified gene	predicted gene 44509
7	gene	55.97757	56.01995	negative	MGI_C57BL6J_2442058	Nipa1	NCBI_Gene:233280,ENSEMBL:ENSMUSG00000047037	MGI:2442058	protein coding gene	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)
7	gene	55.97993	55.98085	positive	MGI_C57BL6J_3802176	Gm15888	ENSEMBL:ENSMUSG00000085927	MGI:3802176	lncRNA gene	predicted gene 15888
7	gene	55.98807	55.99328	positive	MGI_C57BL6J_5621901	Gm39016	NCBI_Gene:105242945	MGI:5621901	lncRNA gene	predicted gene, 39016
7	gene	55.99401	55.99517	negative	MGI_C57BL6J_5753084	Gm44508	ENSEMBL:ENSMUSG00000108640	MGI:5753084	unclassified gene	predicted gene 44508
7	gene	56.01295	56.01748	negative	MGI_C57BL6J_5753086	Gm44510	ENSEMBL:ENSMUSG00000108443	MGI:5753086	unclassified gene	predicted gene 44510
7	pseudogene	56.01393	56.01443	positive	MGI_C57BL6J_3783241	Rps12l1	NCBI_Gene:672959,ENSEMBL:ENSMUSG00000078087	MGI:3783241	pseudogene	ribosomal protein S12-like 1
7	gene	56.03835	56.05008	negative	MGI_C57BL6J_5593280	Gm34121	NCBI_Gene:102637256,ENSEMBL:ENSMUSG00000108659	MGI:5593280	lncRNA gene	predicted gene, 34121
7	gene	56.05015	56.23180	positive	MGI_C57BL6J_103234	Herc2	NCBI_Gene:15204,ENSEMBL:ENSMUSG00000030451	MGI:103234	protein coding gene	HECT and RLD domain containing E3 ubiquitin protein ligase 2
7	pseudogene	56.21636	56.21725	negative	MGI_C57BL6J_5011372	Gm19187	NCBI_Gene:100418404,ENSEMBL:ENSMUSG00000108347	MGI:5011372	pseudogene	predicted gene, 19187
7	gene	56.23959	56.53652	positive	MGI_C57BL6J_97454	Oca2	NCBI_Gene:18431,ENSEMBL:ENSMUSG00000030450	MGI:97454	protein coding gene	oculocutaneous albinism II
7	gene	56.24219	56.24315	negative	MGI_C57BL6J_5753082	Gm44506	ENSEMBL:ENSMUSG00000108773	MGI:5753082	lncRNA gene	predicted gene 44506
7	gene	56.56020	56.56025	positive	MGI_C57BL6J_2442797	F630003A18Rik	NA	NA	protein coding gene	RIKEN cDNA F630003A18 gene
7	gene	56.71646	56.71712	positive	MGI_C57BL6J_3781173	Gm2995	NA	NA	protein coding gene	predicted gene 2995
7	gene	56.71646	57.38722	negative	MGI_C57BL6J_95624	Gabrg3	NCBI_Gene:14407,ENSEMBL:ENSMUSG00000055026	MGI:95624	protein coding gene	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3
7	gene	56.71647	56.71776	negative	MGI_C57BL6J_1917966	6330406O05Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 6330406O05 gene
7	pseudogene	56.74827	56.74929	positive	MGI_C57BL6J_5753555	Gm44979	ENSEMBL:ENSMUSG00000108488	MGI:5753555	pseudogene	predicted gene 44979
7	pseudogene	56.80461	56.80546	negative	MGI_C57BL6J_5010169	Gm17984	NCBI_Gene:100416228,ENSEMBL:ENSMUSG00000108647	MGI:5010169	pseudogene	predicted gene, 17984
7	pseudogene	56.83800	56.83826	negative	MGI_C57BL6J_5753552	Gm44976	ENSEMBL:ENSMUSG00000108586	MGI:5753552	pseudogene	predicted gene 44976
7	pseudogene	56.85543	56.85585	negative	MGI_C57BL6J_5753553	Gm44977	ENSEMBL:ENSMUSG00000108450	MGI:5753553	pseudogene	predicted gene 44977
7	pseudogene	56.87901	56.87961	positive	MGI_C57BL6J_5010172	Gm17987	NCBI_Gene:100416232,ENSEMBL:ENSMUSG00000108556	MGI:5010172	pseudogene	predicted gene, 17987
7	pseudogene	57.02602	57.02753	positive	MGI_C57BL6J_5010827	Gm18642	NCBI_Gene:100417488,ENSEMBL:ENSMUSG00000108377	MGI:5010827	pseudogene	predicted gene, 18642
7	pseudogene	57.05518	57.05645	negative	MGI_C57BL6J_5010493	Gm18308	NCBI_Gene:100416898	MGI:5010493	pseudogene	predicted gene, 18308
7	gene	57.27632	57.28165	negative	MGI_C57BL6J_5621902	Gm39017	NCBI_Gene:105242946	MGI:5621902	lncRNA gene	predicted gene, 39017
7	gene	57.38727	57.40994	positive	MGI_C57BL6J_3642695	Gm9962	NCBI_Gene:791383,ENSEMBL:ENSMUSG00000055048	MGI:3642695	lncRNA gene	predicted gene 9962
7	gene	57.40767	57.51010	negative	MGI_C57BL6J_95617	Gabra5	NCBI_Gene:110886,ENSEMBL:ENSMUSG00000055078	MGI:95617	protein coding gene	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5
7	gene	57.41969	57.82880	positive	MGI_C57BL6J_95621	Gabrb3	NCBI_Gene:14402,ENSEMBL:ENSMUSG00000033676	MGI:95621	protein coding gene	gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
7	gene	57.51964	57.59041	negative	MGI_C57BL6J_5625270	Gm42385	NCBI_Gene:105247256	MGI:5625270	lncRNA gene	predicted gene, 42385
7	gene	57.58106	57.58116	positive	MGI_C57BL6J_5531328	Mir6389	miRBase:MI0021922,NCBI_Gene:102466156,ENSEMBL:ENSMUSG00000099203	MGI:5531328	miRNA gene	microRNA 6389
7	pseudogene	57.71891	57.71916	negative	MGI_C57BL6J_5753429	Gm44853	ENSEMBL:ENSMUSG00000109439	MGI:5753429	pseudogene	predicted gene 44853
7	gene	57.77543	57.77766	positive	MGI_C57BL6J_5753284	Gm44708	ENSEMBL:ENSMUSG00000108597	MGI:5753284	unclassified gene	predicted gene 44708
7	pseudogene	57.87799	57.88131	negative	MGI_C57BL6J_3646954	Gm5596	NCBI_Gene:434189,ENSEMBL:ENSMUSG00000109086	MGI:3646954	pseudogene	predicted gene 5596
7	pseudogene	57.89470	57.89641	positive	MGI_C57BL6J_5593431	Gm34272	NCBI_Gene:102637470,ENSEMBL:ENSMUSG00000109475	MGI:5593431	pseudogene	predicted gene, 34272
7	pseudogene	57.89995	57.90069	negative	MGI_C57BL6J_5010312	Gm18127	NCBI_Gene:100416464,ENSEMBL:ENSMUSG00000109339	MGI:5010312	pseudogene	predicted gene, 18127
7	gene	58.00520	58.00534	positive	MGI_C57BL6J_5453688	Gm23911	ENSEMBL:ENSMUSG00000077784	MGI:5453688	snoRNA gene	predicted gene, 23911
7	gene	58.14810	58.14823	negative	MGI_C57BL6J_5456065	Gm26288	ENSEMBL:ENSMUSG00000077356	MGI:5456065	snoRNA gene	predicted gene, 26288
7	gene	58.39932	58.39939	positive	MGI_C57BL6J_4413860	n-TEttc7	NCBI_Gene:108167516	MGI:4413860	tRNA gene	nuclear encoded tRNA glutamic acid 7 (anticodon TTC)
7	pseudogene	58.51816	58.51853	positive	MGI_C57BL6J_5753428	Gm44852	ENSEMBL:ENSMUSG00000109348	MGI:5753428	pseudogene	predicted gene 44852
7	pseudogene	58.55492	58.55532	positive	MGI_C57BL6J_5753733	Gm45157	ENSEMBL:ENSMUSG00000108877	MGI:5753733	pseudogene	predicted gene 45157
7	gene	58.65614	58.83024	positive	MGI_C57BL6J_1330809	Atp10a	NCBI_Gene:11982,ENSEMBL:ENSMUSG00000025324	MGI:1330809	protein coding gene	ATPase, class V, type 10A
7	gene	58.67542	58.67616	positive	MGI_C57BL6J_5753512	Gm44936	ENSEMBL:ENSMUSG00000109393	MGI:5753512	unclassified gene	predicted gene 44936
7	gene	58.70673	58.74034	negative	MGI_C57BL6J_5621904	Gm39019	NCBI_Gene:105242948	MGI:5621904	lncRNA gene	predicted gene, 39019
7	gene	58.72020	58.72289	positive	MGI_C57BL6J_5753513	Gm44937	ENSEMBL:ENSMUSG00000109434	MGI:5753513	unclassified gene	predicted gene 44937
7	pseudogene	58.83679	58.83794	negative	MGI_C57BL6J_3643254	Gm6226	NCBI_Gene:621446,ENSEMBL:ENSMUSG00000086926	MGI:3643254	pseudogene	predicted gene 6226
7	gene	58.84255	59.08192	positive	MGI_C57BL6J_5621905	Gm39020	NCBI_Gene:105242949	MGI:5621905	lncRNA gene	predicted gene, 39020
7	pseudogene	58.92656	58.92779	positive	MGI_C57BL6J_5753514	Gm44938	ENSEMBL:ENSMUSG00000109261	MGI:5753514	pseudogene	predicted gene 44938
7	pseudogene	58.94893	58.94956	negative	MGI_C57BL6J_5010638	Gm18453	NCBI_Gene:100417211,ENSEMBL:ENSMUSG00000109252	MGI:5010638	pseudogene	predicted gene, 18453
7	pseudogene	58.95158	58.95218	positive	MGI_C57BL6J_3643026	Gm9373	NCBI_Gene:668811,ENSEMBL:ENSMUSG00000108909	MGI:3643026	pseudogene	predicted gene 9373
7	pseudogene	58.97024	58.97140	positive	MGI_C57BL6J_3643024	Gm9375	NCBI_Gene:668813,ENSEMBL:ENSMUSG00000109221	MGI:3643024	pseudogene	predicted gene 9375
7	pseudogene	59.10914	59.10950	positive	MGI_C57BL6J_5753765	Gm45189	ENSEMBL:ENSMUSG00000108838	MGI:5753765	pseudogene	predicted gene 45189
7	pseudogene	59.10992	59.11054	positive	MGI_C57BL6J_3643022	Gm9377	NCBI_Gene:668815,ENSEMBL:ENSMUSG00000108902	MGI:3643022	pseudogene	predicted gene 9377
7	pseudogene	59.17153	59.17191	positive	MGI_C57BL6J_5753319	Gm44743	ENSEMBL:ENSMUSG00000109308	MGI:5753319	pseudogene	predicted gene 44743
7	gene	59.20239	59.20380	negative	MGI_C57BL6J_5753318	Gm44742	ENSEMBL:ENSMUSG00000109332	MGI:5753318	unclassified gene	predicted gene 44742
7	gene	59.22385	59.25479	negative	MGI_C57BL6J_2442217	9330162G02Rik	ENSEMBL:ENSMUSG00000109536	MGI:2442217	unclassified non-coding RNA gene	RIKEN cDNA 9330162G02 gene
7	gene	59.22875	59.31154	positive	MGI_C57BL6J_105098	Ube3a	NCBI_Gene:22215,ENSEMBL:ENSMUSG00000025326	MGI:105098	protein coding gene	ubiquitin protein ligase E3A
7	gene	59.25885	59.26020	negative	MGI_C57BL6J_5753138	Gm44562	ENSEMBL:ENSMUSG00000109362	MGI:5753138	unclassified gene	predicted gene 44562
7	gene	59.26292	59.26393	negative	MGI_C57BL6J_5753135	Gm44559	ENSEMBL:ENSMUSG00000108943	MGI:5753135	unclassified gene	predicted gene 44559
7	gene	59.28605	59.28917	negative	MGI_C57BL6J_5753136	Gm44560	ENSEMBL:ENSMUSG00000108880	MGI:5753136	unclassified gene	predicted gene 44560
7	gene	59.29252	59.29310	positive	MGI_C57BL6J_5753406	Gm44830	ENSEMBL:ENSMUSG00000108886	MGI:5753406	unclassified gene	predicted gene 44830
7	gene	59.30792	59.97576	negative	MGI_C57BL6J_1289201	Snhg14	NCBI_Gene:52480,ENSEMBL:ENSMUSG00000100826	MGI:1289201	lncRNA gene	small nucleolar RNA host gene 14
7	gene	59.31863	59.32182	positive	MGI_C57BL6J_5753405	Gm44829	ENSEMBL:ENSMUSG00000109157	MGI:5753405	unclassified gene	predicted gene 44829
7	gene	59.32732	59.33119	negative	MGI_C57BL6J_1925005	A230103L15Rik	ENSEMBL:ENSMUSG00000109122	MGI:1925005	unclassified non-coding RNA gene	RIKEN cDNA A230103L15 gene
7	gene	59.34223	59.34229	negative	MGI_C57BL6J_5455276	Gm25499	ENSEMBL:ENSMUSG00000077615	MGI:5455276	snoRNA gene	predicted gene, 25499
7	gene	59.34407	59.34415	negative	MGI_C57BL6J_5454743	Gm24966	ENSEMBL:ENSMUSG00000064377	MGI:5454743	snoRNA gene	predicted gene, 24966
7	gene	59.34734	59.34742	negative	MGI_C57BL6J_5452273	Gm22496	ENSEMBL:ENSMUSG00000077681	MGI:5452273	snoRNA gene	predicted gene, 22496
7	gene	59.34768	59.34776	negative	MGI_C57BL6J_5455425	Gm25648	ENSEMBL:ENSMUSG00000094095	MGI:5455425	snoRNA gene	predicted gene, 25648
7	gene	59.34954	59.34961	negative	MGI_C57BL6J_5454083	Gm24306	ENSEMBL:ENSMUSG00000094465	MGI:5454083	snoRNA gene	predicted gene, 24306
7	gene	59.35141	59.35149	negative	MGI_C57BL6J_5455711	Gm25934	ENSEMBL:ENSMUSG00000094476	MGI:5455711	snoRNA gene	predicted gene, 25934
7	gene	59.35328	59.35336	negative	MGI_C57BL6J_5454933	Gm25156	ENSEMBL:ENSMUSG00000094068	MGI:5454933	snoRNA gene	predicted gene, 25156
7	gene	59.35515	59.35523	negative	MGI_C57BL6J_5456265	Gm26488	ENSEMBL:ENSMUSG00000096387	MGI:5456265	snoRNA gene	predicted gene, 26488
7	gene	59.35702	59.35710	negative	MGI_C57BL6J_5453997	Gm24220	ENSEMBL:ENSMUSG00000094631	MGI:5453997	snoRNA gene	predicted gene, 24220
7	gene	59.35889	59.35897	negative	MGI_C57BL6J_5454430	Gm24653	ENSEMBL:ENSMUSG00000094034	MGI:5454430	snoRNA gene	predicted gene, 24653
7	gene	59.36076	59.36084	negative	MGI_C57BL6J_5454746	Gm24969	ENSEMBL:ENSMUSG00000096046	MGI:5454746	snoRNA gene	predicted gene, 24969
7	gene	59.36263	59.36271	negative	MGI_C57BL6J_5454194	Gm24417	ENSEMBL:ENSMUSG00000095425	MGI:5454194	snoRNA gene	predicted gene, 24417
7	gene	59.36450	59.36457	negative	MGI_C57BL6J_5454898	Gm25121	ENSEMBL:ENSMUSG00000094883	MGI:5454898	snoRNA gene	predicted gene, 25121
7	gene	59.36637	59.36644	negative	MGI_C57BL6J_5454434	Gm24657	ENSEMBL:ENSMUSG00000094038	MGI:5454434	snoRNA gene	predicted gene, 24657
7	gene	59.36824	59.36831	negative	MGI_C57BL6J_5456007	Gm26230	ENSEMBL:ENSMUSG00000094508	MGI:5456007	snoRNA gene	predicted gene, 26230
7	gene	59.37011	59.37018	negative	MGI_C57BL6J_5453699	Gm23922	ENSEMBL:ENSMUSG00000095418	MGI:5453699	snoRNA gene	predicted gene, 23922
7	gene	59.37197	59.37205	negative	MGI_C57BL6J_5455091	Gm25314	ENSEMBL:ENSMUSG00000095739	MGI:5455091	snoRNA gene	predicted gene, 25314
7	gene	59.37384	59.37392	negative	MGI_C57BL6J_5455873	Gm26096	ENSEMBL:ENSMUSG00000095342	MGI:5455873	snoRNA gene	predicted gene, 26096
7	gene	59.37571	59.37579	negative	MGI_C57BL6J_5452773	Gm22996	ENSEMBL:ENSMUSG00000096799	MGI:5452773	snoRNA gene	predicted gene, 22996
7	gene	59.37758	59.37766	negative	MGI_C57BL6J_5456276	Gm26499	ENSEMBL:ENSMUSG00000093997	MGI:5456276	snoRNA gene	predicted gene, 26499
7	gene	59.37945	59.37953	negative	MGI_C57BL6J_5455423	Gm25646	ENSEMBL:ENSMUSG00000096496	MGI:5455423	snoRNA gene	predicted gene, 25646
7	gene	59.38608	59.38616	negative	MGI_C57BL6J_5456275	Gm26498	ENSEMBL:ENSMUSG00000093994	MGI:5456275	snoRNA gene	predicted gene, 26498
7	gene	59.38795	59.38803	negative	MGI_C57BL6J_5453437	Gm23660	ENSEMBL:ENSMUSG00000095091	MGI:5453437	snoRNA gene	predicted gene, 23660
7	gene	59.38982	59.38990	negative	MGI_C57BL6J_5453710	Gm23933	ENSEMBL:ENSMUSG00000096291	MGI:5453710	snoRNA gene	predicted gene, 23933
7	gene	59.39169	59.39177	negative	MGI_C57BL6J_5454639	Gm24862	ENSEMBL:ENSMUSG00000093981	MGI:5454639	snoRNA gene	predicted gene, 24862
7	gene	59.39356	59.39364	negative	MGI_C57BL6J_5454643	Gm24866	ENSEMBL:ENSMUSG00000096913	MGI:5454643	snoRNA gene	predicted gene, 24866
7	gene	59.40533	59.40541	negative	MGI_C57BL6J_5452125	Gm22348	ENSEMBL:ENSMUSG00000095031	MGI:5452125	snoRNA gene	predicted gene, 22348
7	gene	59.40720	59.40727	negative	MGI_C57BL6J_5456243	Gm26466	ENSEMBL:ENSMUSG00000095713	MGI:5456243	snoRNA gene	predicted gene, 26466
7	gene	59.40906	59.40914	negative	MGI_C57BL6J_5454576	Gm24799	ENSEMBL:ENSMUSG00000093824	MGI:5454576	snoRNA gene	predicted gene, 24799
7	gene	59.41093	59.41101	negative	MGI_C57BL6J_5453865	Gm24088	ENSEMBL:ENSMUSG00000095491	MGI:5453865	snoRNA gene	predicted gene, 24088
7	gene	59.41280	59.41288	negative	MGI_C57BL6J_5455240	Gm25463	ENSEMBL:ENSMUSG00000095310	MGI:5455240	snoRNA gene	predicted gene, 25463
7	gene	59.41409	59.41417	negative	MGI_C57BL6J_5455006	Gm25229	ENSEMBL:ENSMUSG00000094565	MGI:5455006	snoRNA gene	predicted gene, 25229
7	gene	59.41559	59.41567	negative	MGI_C57BL6J_5454305	Gm24528	ENSEMBL:ENSMUSG00000095911	MGI:5454305	snoRNA gene	predicted gene, 24528
7	gene	59.41746	59.41754	negative	MGI_C57BL6J_5453133	Gm23356	ENSEMBL:ENSMUSG00000094723	MGI:5453133	snoRNA gene	predicted gene, 23356
7	gene	59.41932	59.41940	negative	MGI_C57BL6J_5455226	Gm25449	ENSEMBL:ENSMUSG00000095828	MGI:5455226	snoRNA gene	predicted gene, 25449
7	gene	59.42119	59.42126	negative	MGI_C57BL6J_5454649	Gm24872	ENSEMBL:ENSMUSG00000094667	MGI:5454649	snoRNA gene	predicted gene, 24872
7	gene	59.42305	59.42313	negative	MGI_C57BL6J_5456114	Gm26337	ENSEMBL:ENSMUSG00000096328	MGI:5456114	snoRNA gene	predicted gene, 26337
7	gene	59.42492	59.42500	negative	MGI_C57BL6J_5452922	Gm23145	ENSEMBL:ENSMUSG00000093830	MGI:5452922	snoRNA gene	predicted gene, 23145
7	gene	59.42679	59.42687	negative	MGI_C57BL6J_5451907	Gm22130	ENSEMBL:ENSMUSG00000096430	MGI:5451907	snoRNA gene	predicted gene, 22130
7	gene	59.42867	59.42874	negative	MGI_C57BL6J_5455765	Gm25988	ENSEMBL:ENSMUSG00000096683	MGI:5455765	snoRNA gene	predicted gene, 25988
7	gene	59.43054	59.43061	negative	MGI_C57BL6J_5454998	Gm25221	ENSEMBL:ENSMUSG00000094548	MGI:5454998	snoRNA gene	predicted gene, 25221
7	gene	59.43241	59.43248	negative	MGI_C57BL6J_5456166	Gm26389	ENSEMBL:ENSMUSG00000094919	MGI:5456166	snoRNA gene	predicted gene, 26389
7	gene	59.43428	59.43435	negative	MGI_C57BL6J_5453248	Gm23471	ENSEMBL:ENSMUSG00000094059	MGI:5453248	snoRNA gene	predicted gene, 23471
7	gene	59.43615	59.43623	negative	MGI_C57BL6J_5454897	Gm25120	ENSEMBL:ENSMUSG00000094888	MGI:5454897	snoRNA gene	predicted gene, 25120
7	gene	59.43802	59.43810	negative	MGI_C57BL6J_5454195	Gm24418	ENSEMBL:ENSMUSG00000095428	MGI:5454195	snoRNA gene	predicted gene, 24418
7	gene	59.43989	59.43997	negative	MGI_C57BL6J_5453464	Gm23687	ENSEMBL:ENSMUSG00000096390	MGI:5453464	snoRNA gene	predicted gene, 23687
7	gene	59.44176	59.44184	negative	MGI_C57BL6J_5452170	Gm22393	ENSEMBL:ENSMUSG00000094550	MGI:5452170	snoRNA gene	predicted gene, 22393
7	gene	59.44363	59.44371	negative	MGI_C57BL6J_5454416	Gm24639	ENSEMBL:ENSMUSG00000096161	MGI:5454416	snoRNA gene	predicted gene, 24639
7	gene	59.44550	59.44558	negative	MGI_C57BL6J_5454343	Gm24566	ENSEMBL:ENSMUSG00000094513	MGI:5454343	snoRNA gene	predicted gene, 24566
7	gene	59.44737	59.44745	negative	MGI_C57BL6J_5451888	Gm22111	ENSEMBL:ENSMUSG00000095372	MGI:5451888	snoRNA gene	predicted gene, 22111
7	gene	59.44924	59.44932	negative	MGI_C57BL6J_5452853	Gm23076	ENSEMBL:ENSMUSG00000094610	MGI:5452853	snoRNA gene	predicted gene, 23076
7	gene	59.45112	59.45119	negative	MGI_C57BL6J_5455651	Gm25874	ENSEMBL:ENSMUSG00000094604	MGI:5455651	snoRNA gene	predicted gene, 25874
7	gene	59.45298	59.45306	negative	MGI_C57BL6J_5454865	Gm25088	ENSEMBL:ENSMUSG00000096811	MGI:5454865	snoRNA gene	predicted gene, 25088
7	gene	59.45486	59.45493	negative	MGI_C57BL6J_5452287	Gm22510	ENSEMBL:ENSMUSG00000096048	MGI:5452287	snoRNA gene	predicted gene, 22510
7	gene	59.45882	59.45888	negative	MGI_C57BL6J_5454760	Gm24983	ENSEMBL:ENSMUSG00000077645	MGI:5454760	snoRNA gene	predicted gene, 24983
7	gene	59.46068	59.46075	negative	MGI_C57BL6J_5453804	Gm24027	ENSEMBL:ENSMUSG00000096648	MGI:5453804	snoRNA gene	predicted gene, 24027
7	gene	59.46255	59.46263	negative	MGI_C57BL6J_5452301	Gm22524	ENSEMBL:ENSMUSG00000094625	MGI:5452301	snoRNA gene	predicted gene, 22524
7	gene	59.46442	59.46450	negative	MGI_C57BL6J_5452407	Gm22630	ENSEMBL:ENSMUSG00000095581	MGI:5452407	snoRNA gene	predicted gene, 22630
7	gene	59.46629	59.46637	negative	MGI_C57BL6J_5455518	Gm25741	ENSEMBL:ENSMUSG00000094538	MGI:5455518	snoRNA gene	predicted gene, 25741
7	gene	59.46816	59.46824	negative	MGI_C57BL6J_5455836	Gm26059	ENSEMBL:ENSMUSG00000094364	MGI:5455836	snoRNA gene	predicted gene, 26059
7	gene	59.47003	59.47011	negative	MGI_C57BL6J_5454952	Gm25175	ENSEMBL:ENSMUSG00000095009	MGI:5454952	snoRNA gene	predicted gene, 25175
7	gene	59.47190	59.47198	negative	MGI_C57BL6J_5452288	Gm22511	ENSEMBL:ENSMUSG00000096041	MGI:5452288	snoRNA gene	predicted gene, 22511
7	gene	59.47378	59.47385	negative	MGI_C57BL6J_5454854	Gm25077	ENSEMBL:ENSMUSG00000095476	MGI:5454854	snoRNA gene	predicted gene, 25077
7	gene	59.47562	59.47570	negative	MGI_C57BL6J_5452611	Gm22834	ENSEMBL:ENSMUSG00000093943	MGI:5452611	snoRNA gene	predicted gene, 22834
7	gene	59.47749	59.47757	negative	MGI_C57BL6J_5454703	Gm24926	ENSEMBL:ENSMUSG00000094308	MGI:5454703	snoRNA gene	predicted gene, 24926
7	gene	59.47935	59.47942	negative	MGI_C57BL6J_5455977	Gm26200	ENSEMBL:ENSMUSG00000096605	MGI:5455977	snoRNA gene	predicted gene, 26200
7	gene	59.48122	59.48130	negative	MGI_C57BL6J_5452409	Gm22632	ENSEMBL:ENSMUSG00000093860	MGI:5452409	snoRNA gene	predicted gene, 22632
7	gene	59.48307	59.48315	negative	MGI_C57BL6J_5453031	Gm23254	ENSEMBL:ENSMUSG00000075726	MGI:5453031	snoRNA gene	predicted gene, 23254
7	gene	59.48495	59.48503	negative	MGI_C57BL6J_5456167	Gm26390	ENSEMBL:ENSMUSG00000094917	MGI:5456167	snoRNA gene	predicted gene, 26390
7	gene	59.48682	59.48690	negative	MGI_C57BL6J_5456143	Gm26366	ENSEMBL:ENSMUSG00000094587	MGI:5456143	snoRNA gene	predicted gene, 26366
7	gene	59.48869	59.48877	negative	MGI_C57BL6J_5456113	Gm26336	ENSEMBL:ENSMUSG00000096324	MGI:5456113	snoRNA gene	predicted gene, 26336
7	gene	59.49056	59.49064	negative	MGI_C57BL6J_5456060	Gm26283	ENSEMBL:ENSMUSG00000094049	MGI:5456060	snoRNA gene	predicted gene, 26283
7	gene	59.49243	59.49251	negative	MGI_C57BL6J_5454875	Gm25098	ENSEMBL:ENSMUSG00000095671	MGI:5454875	snoRNA gene	predicted gene, 25098
7	gene	59.49430	59.49438	negative	MGI_C57BL6J_5454479	Gm24702	ENSEMBL:ENSMUSG00000095997	MGI:5454479	snoRNA gene	predicted gene, 24702
7	gene	59.49617	59.49625	negative	MGI_C57BL6J_5456209	Gm26432	ENSEMBL:ENSMUSG00000095885	MGI:5456209	snoRNA gene	predicted gene, 26432
7	gene	59.49804	59.49812	negative	MGI_C57BL6J_5455239	Gm25462	ENSEMBL:ENSMUSG00000095314	MGI:5455239	snoRNA gene	predicted gene, 25462
7	gene	59.50720	59.50728	negative	MGI_C57BL6J_5454272	Gm24495	ENSEMBL:ENSMUSG00000093958	MGI:5454272	snoRNA gene	predicted gene, 24495
7	gene	59.50907	59.50915	negative	MGI_C57BL6J_5455300	Gm25523	ENSEMBL:ENSMUSG00000094765	MGI:5455300	snoRNA gene	predicted gene, 25523
7	gene	59.51093	59.51101	negative	MGI_C57BL6J_5452032	Gm22255	ENSEMBL:ENSMUSG00000096281	MGI:5452032	snoRNA gene	predicted gene, 22255
7	gene	59.51279	59.51287	negative	MGI_C57BL6J_5453226	Gm23449	ENSEMBL:ENSMUSG00000094213	MGI:5453226	snoRNA gene	predicted gene, 23449
7	gene	59.51467	59.51474	negative	MGI_C57BL6J_5453087	Gm23310	ENSEMBL:ENSMUSG00000096454	MGI:5453087	snoRNA gene	predicted gene, 23310
7	gene	59.51654	59.51662	negative	MGI_C57BL6J_5455238	Gm25461	ENSEMBL:ENSMUSG00000093870	MGI:5455238	snoRNA gene	predicted gene, 25461
7	gene	59.51841	59.51849	negative	MGI_C57BL6J_5454087	Gm24310	ENSEMBL:ENSMUSG00000093854	MGI:5454087	snoRNA gene	predicted gene, 24310
7	gene	59.52028	59.52036	negative	MGI_C57BL6J_5452686	Gm22909	ENSEMBL:ENSMUSG00000094524	MGI:5452686	snoRNA gene	predicted gene, 22909
7	gene	59.52216	59.52223	negative	MGI_C57BL6J_5455600	Gm25823	ENSEMBL:ENSMUSG00000094099	MGI:5455600	snoRNA gene	predicted gene, 25823
7	gene	59.52403	59.52410	negative	MGI_C57BL6J_5455424	Gm25647	ENSEMBL:ENSMUSG00000094093	MGI:5455424	snoRNA gene	predicted gene, 25647
7	gene	59.52590	59.52598	negative	MGI_C57BL6J_5452029	Gm22252	ENSEMBL:ENSMUSG00000096287	MGI:5452029	snoRNA gene	predicted gene, 22252
7	gene	59.52777	59.52785	negative	MGI_C57BL6J_5456169	Gm26392	ENSEMBL:ENSMUSG00000094912	MGI:5456169	snoRNA gene	predicted gene, 26392
7	gene	59.52964	59.52972	negative	MGI_C57BL6J_5453996	Gm24219	ENSEMBL:ENSMUSG00000094636	MGI:5453996	snoRNA gene	predicted gene, 24219
7	gene	59.53151	59.53159	negative	MGI_C57BL6J_5455007	Gm25230	ENSEMBL:ENSMUSG00000094567	MGI:5455007	snoRNA gene	predicted gene, 25230
7	gene	59.53339	59.53346	negative	MGI_C57BL6J_5452404	Gm22627	ENSEMBL:ENSMUSG00000094458	MGI:5452404	snoRNA gene	predicted gene, 22627
7	gene	59.53526	59.53533	negative	MGI_C57BL6J_5454362	Gm24585	ENSEMBL:ENSMUSG00000095628	MGI:5454362	snoRNA gene	predicted gene, 24585
7	gene	59.53713	59.53721	negative	MGI_C57BL6J_5453082	Gm23305	ENSEMBL:ENSMUSG00000096185	MGI:5453082	snoRNA gene	predicted gene, 23305
7	gene	59.53900	59.53908	negative	MGI_C57BL6J_5453983	Gm24206	ENSEMBL:ENSMUSG00000096447	MGI:5453983	snoRNA gene	predicted gene, 24206
7	gene	59.54087	59.54095	negative	MGI_C57BL6J_5454862	Gm25085	ENSEMBL:ENSMUSG00000096814	MGI:5454862	snoRNA gene	predicted gene, 25085
7	gene	59.54274	59.54282	negative	MGI_C57BL6J_5454986	Gm25209	ENSEMBL:ENSMUSG00000096306	MGI:5454986	snoRNA gene	predicted gene, 25209
7	gene	59.54462	59.54469	negative	MGI_C57BL6J_5453459	Gm23682	ENSEMBL:ENSMUSG00000096067	MGI:5453459	snoRNA gene	predicted gene, 23682
7	gene	59.54649	59.54657	negative	MGI_C57BL6J_5454431	Gm24654	ENSEMBL:ENSMUSG00000094032	MGI:5454431	snoRNA gene	predicted gene, 24654
7	gene	59.54836	59.54844	negative	MGI_C57BL6J_5456111	Gm26334	ENSEMBL:ENSMUSG00000096090	MGI:5456111	snoRNA gene	predicted gene, 26334
7	gene	59.55024	59.55032	negative	MGI_C57BL6J_5455519	Gm25742	ENSEMBL:ENSMUSG00000096595	MGI:5455519	snoRNA gene	predicted gene, 25742
7	gene	59.55211	59.55219	negative	MGI_C57BL6J_5455362	Gm25585	ENSEMBL:ENSMUSG00000095402	MGI:5455362	snoRNA gene	predicted gene, 25585
7	gene	59.55398	59.55406	negative	MGI_C57BL6J_5455617	Gm25840	ENSEMBL:ENSMUSG00000095764	MGI:5455617	snoRNA gene	predicted gene, 25840
7	gene	59.55585	59.55593	negative	MGI_C57BL6J_5454866	Gm25089	ENSEMBL:ENSMUSG00000075968	MGI:5454866	snoRNA gene	predicted gene, 25089
7	gene	59.55773	59.55781	negative	MGI_C57BL6J_5453817	Gm24040	ENSEMBL:ENSMUSG00000095924	MGI:5453817	snoRNA gene	predicted gene, 24040
7	gene	59.55960	59.55968	negative	MGI_C57BL6J_5451827	Gm22050	ENSEMBL:ENSMUSG00000094998	MGI:5451827	snoRNA gene	predicted gene, 22050
7	gene	59.56147	59.56155	negative	MGI_C57BL6J_5453063	Gm23286	ENSEMBL:ENSMUSG00000095357	MGI:5453063	snoRNA gene	predicted gene, 23286
7	gene	59.56334	59.56342	negative	MGI_C57BL6J_5453798	Gm24021	ENSEMBL:ENSMUSG00000095021	MGI:5453798	snoRNA gene	predicted gene, 24021
7	gene	59.56522	59.56530	negative	MGI_C57BL6J_5452051	Gm22274	ENSEMBL:ENSMUSG00000095660	MGI:5452051	snoRNA gene	predicted gene, 22274
7	gene	59.56709	59.56717	negative	MGI_C57BL6J_5454429	Gm24652	ENSEMBL:ENSMUSG00000094037	MGI:5454429	snoRNA gene	predicted gene, 24652
7	gene	59.56896	59.56904	negative	MGI_C57BL6J_5453395	Gm23618	ENSEMBL:ENSMUSG00000094438	MGI:5453395	snoRNA gene	predicted gene, 23618
7	gene	59.57084	59.57091	negative	MGI_C57BL6J_5453465	Gm23688	ENSEMBL:ENSMUSG00000096392	MGI:5453465	snoRNA gene	predicted gene, 23688
7	gene	59.57271	59.57279	negative	MGI_C57BL6J_5454347	Gm24570	ENSEMBL:ENSMUSG00000096821	MGI:5454347	snoRNA gene	predicted gene, 24570
7	gene	59.57458	59.57466	negative	MGI_C57BL6J_5456244	Gm26467	ENSEMBL:ENSMUSG00000095714	MGI:5456244	snoRNA gene	predicted gene, 26467
7	gene	59.57645	59.57653	negative	MGI_C57BL6J_5454971	Gm25194	ENSEMBL:ENSMUSG00000095945	MGI:5454971	snoRNA gene	predicted gene, 25194
7	gene	59.57832	59.57840	negative	MGI_C57BL6J_5452417	Gm22640	ENSEMBL:ENSMUSG00000094847	MGI:5452417	snoRNA gene	predicted gene, 22640
7	gene	59.58019	59.58027	negative	MGI_C57BL6J_5454729	Gm24952	ENSEMBL:ENSMUSG00000094148	MGI:5454729	snoRNA gene	predicted gene, 24952
7	gene	59.58206	59.58214	negative	MGI_C57BL6J_5454864	Gm25087	ENSEMBL:ENSMUSG00000096812	MGI:5454864	snoRNA gene	predicted gene, 25087
7	gene	59.58393	59.58401	negative	MGI_C57BL6J_5453721	Gm23944	ENSEMBL:ENSMUSG00000094129	MGI:5453721	snoRNA gene	predicted gene, 23944
7	gene	59.58581	59.58588	negative	MGI_C57BL6J_5452406	Gm22629	ENSEMBL:ENSMUSG00000095587	MGI:5452406	snoRNA gene	predicted gene, 22629
7	gene	59.58768	59.58775	negative	MGI_C57BL6J_5456151	Gm26374	ENSEMBL:ENSMUSG00000095182	MGI:5456151	snoRNA gene	predicted gene, 26374
7	gene	59.58955	59.58963	negative	MGI_C57BL6J_5456061	Gm26284	ENSEMBL:ENSMUSG00000094048	MGI:5456061	snoRNA gene	predicted gene, 26284
7	gene	59.59142	59.59150	negative	MGI_C57BL6J_5455229	Gm25452	ENSEMBL:ENSMUSG00000094442	MGI:5455229	snoRNA gene	predicted gene, 25452
7	gene	59.59329	59.59337	negative	MGI_C57BL6J_5455761	Gm25984	ENSEMBL:ENSMUSG00000096028	MGI:5455761	snoRNA gene	predicted gene, 25984
7	gene	59.59517	59.59524	negative	MGI_C57BL6J_5454923	Gm25146	ENSEMBL:ENSMUSG00000096136	MGI:5454923	snoRNA gene	predicted gene, 25146
7	gene	59.59703	59.59711	negative	MGI_C57BL6J_5454536	Gm24759	ENSEMBL:ENSMUSG00000094922	MGI:5454536	snoRNA gene	predicted gene, 24759
7	gene	59.59890	59.59898	negative	MGI_C57BL6J_5453877	Gm24100	ENSEMBL:ENSMUSG00000096565	MGI:5453877	snoRNA gene	predicted gene, 24100
7	gene	59.60078	59.60085	negative	MGI_C57BL6J_5452030	Gm22253	ENSEMBL:ENSMUSG00000096285	MGI:5452030	snoRNA gene	predicted gene, 22253
7	gene	59.60265	59.60272	negative	MGI_C57BL6J_5454794	Gm25017	ENSEMBL:ENSMUSG00000094753	MGI:5454794	snoRNA gene	predicted gene, 25017
7	gene	59.60452	59.60460	negative	MGI_C57BL6J_5453352	Gm23575	ENSEMBL:ENSMUSG00000094903	MGI:5453352	snoRNA gene	predicted gene, 23575
7	gene	59.60639	59.60647	negative	MGI_C57BL6J_5452168	Gm22391	ENSEMBL:ENSMUSG00000094554	MGI:5452168	snoRNA gene	predicted gene, 22391
7	gene	59.60826	59.60834	negative	MGI_C57BL6J_5452226	Gm22449	ENSEMBL:ENSMUSG00000095501	MGI:5452226	snoRNA gene	predicted gene, 22449
7	gene	59.61013	59.61021	negative	MGI_C57BL6J_5453914	Gm24137	ENSEMBL:ENSMUSG00000095511	MGI:5453914	snoRNA gene	predicted gene, 24137
7	gene	59.61201	59.61208	negative	MGI_C57BL6J_5452689	Gm22912	ENSEMBL:ENSMUSG00000094522	MGI:5452689	snoRNA gene	predicted gene, 22912
7	gene	59.61388	59.61395	negative	MGI_C57BL6J_5455487	Gm25710	ENSEMBL:ENSMUSG00000096359	MGI:5455487	snoRNA gene	predicted gene, 25710
7	gene	59.61574	59.61582	negative	MGI_C57BL6J_5456211	Gm26434	ENSEMBL:ENSMUSG00000094283	MGI:5456211	snoRNA gene	predicted gene, 26434
7	gene	59.61761	59.61769	negative	MGI_C57BL6J_5453337	Gm23560	ENSEMBL:ENSMUSG00000095220	MGI:5453337	snoRNA gene	predicted gene, 23560
7	gene	59.61902	59.61910	negative	MGI_C57BL6J_5455647	Gm25870	ENSEMBL:ENSMUSG00000094609	MGI:5455647	snoRNA gene	predicted gene, 25870
7	gene	59.61916	59.67888	negative	MGI_C57BL6J_892030	Ipw	NCBI_Gene:16353	MGI:892030	lncRNA gene	imprinted gene in the Prader-Willi syndrome region
7	gene	59.62769	59.63068	negative	MGI_C57BL6J_5753407	Gm44831	ENSEMBL:ENSMUSG00000109575	MGI:5753407	unclassified gene	predicted gene 44831
7	gene	59.67346	59.67355	negative	MGI_C57BL6J_5453639	Gm23862	ENSEMBL:ENSMUSG00000093929	MGI:5453639	snoRNA gene	predicted gene, 23862
7	gene	59.67599	59.67608	negative	MGI_C57BL6J_5456281	Gm26504	NCBI_Gene:64243,ENSEMBL:ENSMUSG00000096019	MGI:5456281	snoRNA gene	predicted gene, 26504
7	gene	59.67851	59.67860	negative	MGI_C57BL6J_5452062	Gm22285	ENSEMBL:ENSMUSG00000094890	MGI:5452062	snoRNA gene	predicted gene, 22285
7	gene	59.68106	59.68115	negative	MGI_C57BL6J_5451908	Gm22131	ENSEMBL:ENSMUSG00000096431	MGI:5451908	snoRNA gene	predicted gene, 22131
7	gene	59.68359	59.68368	negative	MGI_C57BL6J_5453930	Gm24153	ENSEMBL:ENSMUSG00000096159	MGI:5453930	snoRNA gene	predicted gene, 24153
7	gene	59.69322	59.69331	negative	MGI_C57BL6J_5456142	Gm26365	ENSEMBL:ENSMUSG00000094581	MGI:5456142	snoRNA gene	predicted gene, 26365
7	gene	59.69574	59.69584	negative	MGI_C57BL6J_5454386	Gm24609	ENSEMBL:ENSMUSG00000094236	MGI:5454386	snoRNA gene	predicted gene, 24609
7	gene	59.69831	59.69840	negative	MGI_C57BL6J_5454041	Gm24264	ENSEMBL:ENSMUSG00000096248	MGI:5454041	snoRNA gene	predicted gene, 24264
7	gene	59.70088	59.70097	negative	MGI_C57BL6J_5454932	Gm25155	ENSEMBL:ENSMUSG00000094069	MGI:5454932	snoRNA gene	predicted gene, 25155
7	gene	59.70343	59.70352	negative	MGI_C57BL6J_5455593	Gm25816	ENSEMBL:ENSMUSG00000096148	MGI:5455593	snoRNA gene	predicted gene, 25816
7	gene	59.70597	59.70606	negative	MGI_C57BL6J_5452918	Gm23141	ENSEMBL:ENSMUSG00000094407	MGI:5452918	snoRNA gene	predicted gene, 23141
7	gene	59.70847	59.70856	negative	MGI_C57BL6J_5453544	Gm23767	ENSEMBL:ENSMUSG00000095734	MGI:5453544	snoRNA gene	predicted gene, 23767
7	gene	59.71101	59.71110	negative	MGI_C57BL6J_5452194	Gm22417	ENSEMBL:ENSMUSG00000094960	MGI:5452194	snoRNA gene	predicted gene, 22417
7	gene	59.71353	59.71363	negative	MGI_C57BL6J_5452361	Gm22584	ENSEMBL:ENSMUSG00000096231	MGI:5452361	snoRNA gene	predicted gene, 22584
7	gene	59.71606	59.71615	negative	MGI_C57BL6J_5456047	Gm26270	ENSEMBL:ENSMUSG00000096110	MGI:5456047	snoRNA gene	predicted gene, 26270
7	gene	59.71859	59.71868	negative	MGI_C57BL6J_5452866	Gm23089	ENSEMBL:ENSMUSG00000096502	MGI:5452866	snoRNA gene	predicted gene, 23089
7	gene	59.72113	59.72122	negative	MGI_C57BL6J_5454488	Gm24711	ENSEMBL:ENSMUSG00000096082	MGI:5454488	snoRNA gene	predicted gene, 24711
7	gene	59.72364	59.72374	negative	MGI_C57BL6J_5455965	Gm26188	ENSEMBL:ENSMUSG00000095060	MGI:5455965	snoRNA gene	predicted gene, 26188
7	gene	59.72616	59.72625	negative	MGI_C57BL6J_5453042	Gm23265	ENSEMBL:ENSMUSG00000094150	MGI:5453042	snoRNA gene	predicted gene, 23265
7	gene	59.72868	59.72877	negative	MGI_C57BL6J_5454295	Gm24518	ENSEMBL:ENSMUSG00000096677	MGI:5454295	snoRNA gene	predicted gene, 24518
7	gene	59.73122	59.73132	negative	MGI_C57BL6J_5455721	Gm25944	ENSEMBL:ENSMUSG00000096057	MGI:5455721	snoRNA gene	predicted gene, 25944
7	gene	59.73377	59.73386	negative	MGI_C57BL6J_5452824	Gm23047	ENSEMBL:ENSMUSG00000096305	MGI:5452824	snoRNA gene	predicted gene, 23047
7	gene	59.73631	59.73641	negative	MGI_C57BL6J_5453730	Gm23953	ENSEMBL:ENSMUSG00000095389	MGI:5453730	snoRNA gene	predicted gene, 23953
7	gene	59.73885	59.73894	negative	MGI_C57BL6J_5456109	Gm26332	ENSEMBL:ENSMUSG00000096095	MGI:5456109	snoRNA gene	predicted gene, 26332
7	gene	59.74137	59.74147	negative	MGI_C57BL6J_5455809	Gm26032	ENSEMBL:ENSMUSG00000095155	MGI:5455809	snoRNA gene	predicted gene, 26032
7	gene	59.74391	59.74401	negative	MGI_C57BL6J_5452640	Gm22863	ENSEMBL:ENSMUSG00000096660	MGI:5452640	snoRNA gene	predicted gene, 22863
7	gene	59.74643	59.74652	negative	MGI_C57BL6J_5454395	Gm24618	ENSEMBL:ENSMUSG00000095542	MGI:5454395	snoRNA gene	predicted gene, 24618
7	gene	59.74896	59.74905	negative	MGI_C57BL6J_5451823	Gm22046	ENSEMBL:ENSMUSG00000094994	MGI:5451823	snoRNA gene	predicted gene, 22046
7	gene	59.75149	59.75158	negative	MGI_C57BL6J_5454537	Gm24760	ENSEMBL:ENSMUSG00000094923	MGI:5454537	snoRNA gene	predicted gene, 24760
7	gene	59.75400	59.75409	negative	MGI_C57BL6J_5455127	Gm25350	ENSEMBL:ENSMUSG00000096070	MGI:5455127	snoRNA gene	predicted gene, 25350
7	gene	59.75651	59.75661	negative	MGI_C57BL6J_5456279	Gm26502	ENSEMBL:ENSMUSG00000096017	MGI:5456279	snoRNA gene	predicted gene, 26502
7	gene	59.75903	59.75912	negative	MGI_C57BL6J_5453090	Gm23313	ENSEMBL:ENSMUSG00000096865	MGI:5453090	snoRNA gene	predicted gene, 23313
7	gene	59.76155	59.76165	negative	MGI_C57BL6J_5455248	Gm25471	ENSEMBL:ENSMUSG00000094837	MGI:5455248	snoRNA gene	predicted gene, 25471
7	gene	59.76409	59.76418	negative	MGI_C57BL6J_5452553	Gm22776	ENSEMBL:ENSMUSG00000094109	MGI:5452553	snoRNA gene	predicted gene, 22776
7	gene	59.76661	59.76670	negative	MGI_C57BL6J_5453223	Gm23446	ENSEMBL:ENSMUSG00000094218	MGI:5453223	snoRNA gene	predicted gene, 23446
7	gene	59.76914	59.76923	negative	MGI_C57BL6J_5454987	Gm25210	ENSEMBL:ENSMUSG00000096302	MGI:5454987	snoRNA gene	predicted gene, 25210
7	gene	59.77166	59.77175	negative	MGI_C57BL6J_5451905	Gm22128	ENSEMBL:ENSMUSG00000095100	MGI:5451905	snoRNA gene	predicted gene, 22128
7	gene	59.77419	59.77428	negative	MGI_C57BL6J_5452628	Gm22851	ENSEMBL:ENSMUSG00000095045	MGI:5452628	snoRNA gene	predicted gene, 22851
7	gene	59.77672	59.77682	negative	MGI_C57BL6J_5454851	Gm25074	ENSEMBL:ENSMUSG00000095479	MGI:5454851	snoRNA gene	predicted gene, 25074
7	gene	59.77925	59.77934	negative	MGI_C57BL6J_5454934	Gm25157	ENSEMBL:ENSMUSG00000094060	MGI:5454934	snoRNA gene	predicted gene, 25157
7	gene	59.78178	59.78187	negative	MGI_C57BL6J_5452408	Gm22631	ENSEMBL:ENSMUSG00000093869	MGI:5452408	snoRNA gene	predicted gene, 22631
7	gene	59.78429	59.78439	negative	MGI_C57BL6J_5455251	Gm25474	ENSEMBL:ENSMUSG00000094831	MGI:5455251	snoRNA gene	predicted gene, 25474
7	gene	59.78682	59.78691	negative	MGI_C57BL6J_5452718	Gm22941	ENSEMBL:ENSMUSG00000095639	MGI:5452718	snoRNA gene	predicted gene, 22941
7	gene	59.78933	59.78942	negative	MGI_C57BL6J_5456023	Gm26246	ENSEMBL:ENSMUSG00000095618	MGI:5456023	snoRNA gene	predicted gene, 26246
7	gene	59.79184	59.79194	negative	MGI_C57BL6J_5451824	Gm22047	ENSEMBL:ENSMUSG00000094997	MGI:5451824	snoRNA gene	predicted gene, 22047
7	gene	59.79436	59.79445	negative	MGI_C57BL6J_5455374	Gm25597	ENSEMBL:ENSMUSG00000096845	MGI:5455374	snoRNA gene	predicted gene, 25597
7	gene	59.79691	59.79700	negative	MGI_C57BL6J_5455874	Gm26097	ENSEMBL:ENSMUSG00000095349	MGI:5455874	snoRNA gene	predicted gene, 26097
7	gene	59.79944	59.79954	negative	MGI_C57BL6J_5452035	Gm22258	ENSEMBL:ENSMUSG00000096868	MGI:5452035	snoRNA gene	predicted gene, 22258
7	gene	59.80196	59.80205	negative	MGI_C57BL6J_5455978	Gm26201	ENSEMBL:ENSMUSG00000096604	MGI:5455978	snoRNA gene	predicted gene, 26201
7	gene	59.80447	59.80456	negative	MGI_C57BL6J_5453396	Gm23619	ENSEMBL:ENSMUSG00000093802	MGI:5453396	snoRNA gene	predicted gene, 23619
7	gene	59.80700	59.80709	negative	MGI_C57BL6J_5452589	Gm22812	ENSEMBL:ENSMUSG00000096462	MGI:5452589	snoRNA gene	predicted gene, 22812
7	gene	59.85921	59.85931	negative	MGI_C57BL6J_5456210	Gm26433	ENSEMBL:ENSMUSG00000094287	MGI:5456210	snoRNA gene	predicted gene, 26433
7	gene	59.86173	59.86182	negative	MGI_C57BL6J_5453134	Snord116l17	ENSEMBL:ENSMUSG00000093974	MGI:5453134	snoRNA gene	small nucleolar RNA, C/D box 116-like 17
7	gene	59.86424	59.86433	negative	MGI_C57BL6J_5455392	Gm25615	ENSEMBL:ENSMUSG00000095641	MGI:5455392	snoRNA gene	predicted gene, 25615
7	gene	59.86679	59.86688	negative	MGI_C57BL6J_5451887	Snord116l16	ENSEMBL:ENSMUSG00000095374	MGI:5451887	snoRNA gene	small nucleolar RNA, C/D box 116-like 16
7	gene	59.86933	59.86942	negative	MGI_C57BL6J_5453501	Snord116l15	ENSEMBL:ENSMUSG00000094987	MGI:5453501	snoRNA gene	small nucleolar RNA, C/D box 116-like 15
7	gene	59.87186	59.87196	negative	MGI_C57BL6J_5451965	Snord116l14	ENSEMBL:ENSMUSG00000094389	MGI:5451965	snoRNA gene	small nucleolar RNA, C/D box 116-like 14
7	gene	59.87438	59.87447	negative	MGI_C57BL6J_5453326	Snord116l13	ENSEMBL:ENSMUSG00000094573	MGI:5453326	snoRNA gene	small nucleolar RNA, C/D box 116-like 13
7	gene	59.87693	59.87703	negative	MGI_C57BL6J_1927533	Snord116l2	NCBI_Gene:64245,ENSEMBL:ENSMUSG00000096759	MGI:1927533	snoRNA gene	small nucleolar RNA, C/D box 116-like 2
7	gene	59.87946	59.87955	negative	MGI_C57BL6J_1927539	Snord116l8	ENSEMBL:ENSMUSG00000095458	MGI:1927539	snoRNA gene	small nucleolar RNA, C/D box 116-like 8
7	gene	59.88199	59.88208	negative	MGI_C57BL6J_1927538	Snord116l7	ENSEMBL:ENSMUSG00000096313	MGI:1927538	snoRNA gene	small nucleolar RNA, C/D box 116-like 7
7	gene	59.88450	59.88459	negative	MGI_C57BL6J_1927537	Snord116l6	ENSEMBL:ENSMUSG00000096190	MGI:1927537	snoRNA gene	small nucleolar RNA, C/D box 116-like 6
7	gene	59.88706	59.88715	negative	MGI_C57BL6J_1927536	Snord116l5	ENSEMBL:ENSMUSG00000094039	MGI:1927536	snoRNA gene	small nucleolar RNA, C/D box 116-like 5
7	gene	59.88959	59.88969	negative	MGI_C57BL6J_1927535	Snord116l4	ENSEMBL:ENSMUSG00000093971	MGI:1927535	snoRNA gene	small nucleolar RNA, C/D box 116-like 4
7	gene	59.89211	59.89220	negative	MGI_C57BL6J_1927534	Snord116l3	ENSEMBL:ENSMUSG00000094599	MGI:1927534	snoRNA gene	small nucleolar RNA, C/D box 116-like 3
7	gene	59.89462	59.89471	negative	MGI_C57BL6J_1927532	Snord116l1	NCBI_Gene:64244,ENSEMBL:ENSMUSG00000096475	MGI:1927532	snoRNA gene	small nucleolar RNA, C/D box 116-like 1
7	gene	59.89716	59.89725	negative	MGI_C57BL6J_1927540	Snord116l9	ENSEMBL:ENSMUSG00000096634	MGI:1927540	snoRNA gene	small nucleolar RNA, C/D box 116-like 9
7	gene	59.89969	59.89978	negative	MGI_C57BL6J_5453473	Snord116l10	ENSEMBL:ENSMUSG00000094642	MGI:5453473	snoRNA gene	small nucleolar RNA, C/D box 116-like 10
7	gene	59.90221	59.90231	negative	MGI_C57BL6J_5455871	Snord116l11	ENSEMBL:ENSMUSG00000095691	MGI:5455871	snoRNA gene	small nucleolar RNA, C/D box 116-like 11
7	gene	59.90476	59.90485	negative	MGI_C57BL6J_5452066	Snord116l12	ENSEMBL:ENSMUSG00000094274	MGI:5452066	snoRNA gene	small nucleolar RNA, C/D box 116-like 12
7	gene	59.92303	59.92312	negative	MGI_C57BL6J_5452150	Gm22373	ENSEMBL:ENSMUSG00000077772	MGI:5452150	snoRNA gene	predicted gene, 22373
7	gene	59.97415	60.00506	negative	MGI_C57BL6J_5613898	Gm38393	ENSEMBL:ENSMUSG00000000948	MGI:5613898	protein coding gene	predicted gene, 38393
7	gene	59.97881	59.97887	negative	MGI_C57BL6J_3819546	Snord64	NCBI_Gene:100217429,ENSEMBL:ENSMUSG00000077191	MGI:3819546	snoRNA gene	small nucleolar RNA, C/D box 64
7	gene	59.98088	59.98094	negative	MGI_C57BL6J_4358283	Snord107	ENSEMBL:ENSMUSG00000089375	MGI:4358283	snoRNA gene	small nucleolar RNA, C/D box 107
7	gene	59.98250	60.14022	negative	MGI_C57BL6J_98347	Snrpn	NCBI_Gene:20646,ENSEMBL:ENSMUSG00000102252	MGI:98347	protein coding gene	small nuclear ribonucleoprotein N
7	gene	59.98250	60.00516	negative	MGI_C57BL6J_1891236	Snurf	NCBI_Gene:84704,ENSEMBL:ENSMUSG00000102627	MGI:1891236	protein coding gene	SNRPN upstream reading frame
7	pseudogene	60.12405	60.13441	positive	MGI_C57BL6J_5011093	Gm18908	NCBI_Gene:108167430,ENSEMBL:ENSMUSG00000108937	MGI:5011093	pseudogene	predicted gene, 18908
7	pseudogene	60.15543	60.15683	positive	MGI_C57BL6J_3646404	Gm7367	NCBI_Gene:664849,ENSEMBL:ENSMUSG00000047370	MGI:3646404	pseudogene	predicted pseudogene 7367
7	pseudogene	60.27281	60.28021	positive	MGI_C57BL6J_5010314	Gm18129	NCBI_Gene:100416479,ENSEMBL:ENSMUSG00000109451	MGI:5010314	pseudogene	predicted gene, 18129
7	gene	60.28010	60.28462	negative	MGI_C57BL6J_5621906	Gm39021	NCBI_Gene:105242956	MGI:5621906	lncRNA gene	predicted gene, 39021
7	pseudogene	60.29318	60.29409	positive	MGI_C57BL6J_5589355	Gm30196	NCBI_Gene:102632017,ENSEMBL:ENSMUSG00000109220	MGI:5589355	pseudogene	predicted gene, 30196
7	gene	60.43769	60.44404	negative	MGI_C57BL6J_5625279	Gm42394	NCBI_Gene:105247266	MGI:5625279	lncRNA gene	predicted gene, 42394
7	pseudogene	60.55531	60.64797	positive	MGI_C57BL6J_3781377	Gm3198	NCBI_Gene:102637921,ENSEMBL:ENSMUSG00000109447	MGI:3781377	pseudogene	predicted gene 3198
7	pseudogene	60.75336	60.75401	negative	MGI_C57BL6J_3642512	Gm10297	NCBI_Gene:100041211,ENSEMBL:ENSMUSG00000109222	MGI:3642512	pseudogene	predicted pseudogene 10297
7	pseudogene	60.75487	60.76125	positive	MGI_C57BL6J_3648361	Gm7394	NCBI_Gene:105242952,ENSEMBL:ENSMUSG00000109533	MGI:3648361	pseudogene	predicted gene 7394
7	gene	60.83360	60.92294	negative	MGI_C57BL6J_5588888	Gm29729	NCBI_Gene:101055840	MGI:5588888	lncRNA gene	predicted gene, 29729
7	gene	60.85653	60.85726	negative	MGI_C57BL6J_1920404	3110018A10Rik	NA	NA	unclassified gene	RIKEN cDNA 3110018A10 gene
7	gene	60.91555	60.92291	negative	MGI_C57BL6J_5753220	Gm44644	ENSEMBL:ENSMUSG00000109121	MGI:5753220	lncRNA gene	predicted gene 44644
7	gene	60.92292	60.96138	negative	MGI_C57BL6J_5753219	Gm44643	ENSEMBL:ENSMUSG00000108867	MGI:5753219	lncRNA gene	predicted gene 44643
7	gene	60.92315	60.96146	negative	MGI_C57BL6J_5589988	Gm30829	NCBI_Gene:102632867	MGI:5589988	lncRNA gene	predicted gene, 30829
7	gene	61.01026	61.31172	negative	MGI_C57BL6J_3644205	A230006K03Rik	NCBI_Gene:27493,ENSEMBL:ENSMUSG00000068151	MGI:3644205	lncRNA gene	RIKEN cDNA A230006K03 gene
7	gene	61.09043	61.16158	negative	MGI_C57BL6J_5621336	Gm38451	NCBI_Gene:102633165,ENSEMBL:ENSMUSG00000108917	MGI:5621336	lncRNA gene	predicted gene, 38451
7	gene	61.19707	61.31177	negative	MGI_C57BL6J_5590604	Gm31445	NCBI_Gene:102633679	MGI:5590604	protein coding gene	predicted gene, 31445
7	gene	61.32964	61.33624	negative	MGI_C57BL6J_5590811	Gm31652	NCBI_Gene:102633955	MGI:5590811	lncRNA gene	predicted gene, 31652
7	gene	61.52941	61.61533	negative	MGI_C57BL6J_2442668	B230209E15Rik	NCBI_Gene:319752,ENSEMBL:ENSMUSG00000109006	MGI:2442668	lncRNA gene	RIKEN cDNA B230209E15 gene
7	pseudogene	61.54853	61.54977	negative	MGI_C57BL6J_3643295	Ube2nl	NCBI_Gene:620934,ENSEMBL:ENSMUSG00000059585	MGI:3643295	pseudogene	ubiquitin-conjugating enzyme E2N-like
7	gene	61.67383	61.67391	negative	MGI_C57BL6J_5455310	Gm25533	ENSEMBL:ENSMUSG00000093101	MGI:5455310	miRNA gene	predicted gene, 25533
7	gene	61.68151	61.68159	negative	MGI_C57BL6J_5453739	Gm23962	ENSEMBL:ENSMUSG00000096076	MGI:5453739	miRNA gene	predicted gene, 23962
7	gene	61.68312	61.68319	negative	MGI_C57BL6J_4834228	Mir344d-1	miRBase:MI0004524,NCBI_Gene:100526544,ENSEMBL:ENSMUSG00000092847	MGI:4834228	miRNA gene	microRNA 344d-1
7	gene	61.68527	61.68535	negative	MGI_C57BL6J_4834229	Mir344d-2	miRBase:MI0004619,NCBI_Gene:100526531,ENSEMBL:ENSMUSG00000096893	MGI:4834229	miRNA gene	microRNA 344d-2
7	gene	61.70452	61.92869	negative	MGI_C57BL6J_2442922	A230057D06Rik	NCBI_Gene:319893,ENSEMBL:ENSMUSG00000109394	MGI:2442922	lncRNA gene	RIKEN cDNA A230057D06 gene
7	gene	61.70659	61.70667	negative	MGI_C57BL6J_5453267	Gm23490	ENSEMBL:ENSMUSG00000095010	MGI:5453267	miRNA gene	predicted gene, 23490
7	gene	61.70871	61.70877	negative	MGI_C57BL6J_5452243	Gm22466	ENSEMBL:ENSMUSG00000093019	MGI:5452243	miRNA gene	predicted gene, 22466
7	gene	61.72625	61.72633	negative	MGI_C57BL6J_4834220	Mir344d-3	miRBase:MI0004227,NCBI_Gene:100526543,ENSEMBL:ENSMUSG00000095292	MGI:4834220	miRNA gene	microRNA 344d-3
7	gene	61.73369	61.73378	negative	MGI_C57BL6J_5453694	Gm23917	ENSEMBL:ENSMUSG00000092997	MGI:5453694	miRNA gene	predicted gene, 23917
7	gene	61.73554	61.73560	negative	MGI_C57BL6J_4834316	Mir344e	miRBase:MI0014094,NCBI_Gene:100526541,ENSEMBL:ENSMUSG00000077869	MGI:4834316	miRNA gene	microRNA 344e
7	gene	61.73935	61.73941	negative	MGI_C57BL6J_5454202	Mir344h-1	miRBase:MI0019196,NCBI_Gene:100885840,ENSEMBL:ENSMUSG00000094173	MGI:5454202	miRNA gene	microRNA 344h-1
7	gene	61.74237	61.74242	negative	MGI_C57BL6J_5453086	Mir344h-2	miRBase:MI0019197,NCBI_Gene:100885841,ENSEMBL:ENSMUSG00000096189	MGI:5453086	miRNA gene	microRNA 344h-2
7	gene	61.75047	61.75054	negative	MGI_C57BL6J_5453650	Gm23873	ENSEMBL:ENSMUSG00000093170	MGI:5453650	miRNA gene	predicted gene, 23873
7	gene	61.75144	61.75369	negative	MGI_C57BL6J_2444347	6330444A18Rik	NA	NA	unclassified gene	RIKEN cDNA 6330444A18 gene
7	gene	61.79052	61.79058	negative	MGI_C57BL6J_4834317	Mir344b	miRBase:MI0014095,NCBI_Gene:100526558,ENSEMBL:ENSMUSG00000092921	MGI:4834317	miRNA gene	microRNA 344b
7	gene	61.83731	61.83740	negative	MGI_C57BL6J_4834318	Mir344c	miRBase:MI0014096,NCBI_Gene:100526506,ENSEMBL:ENSMUSG00000077107	MGI:4834318	miRNA gene	microRNA 344c
7	gene	61.86041	61.86296	negative	MGI_C57BL6J_2444892	A230077L10Rik	NA	NA	unclassified gene	RIKEN cDNA A230077L10 gene
7	gene	61.87777	61.87786	negative	MGI_C57BL6J_3619359	Mir344	miRBase:MI0000630,NCBI_Gene:723931,ENSEMBL:ENSMUSG00000065568	MGI:3619359	miRNA gene	microRNA 344
7	pseudogene	61.88297	61.88361	positive	MGI_C57BL6J_5011217	Gm19032	NCBI_Gene:100418144,ENSEMBL:ENSMUSG00000109465	MGI:5011217	pseudogene	predicted gene, 19032
7	gene	61.93014	61.98236	negative	MGI_C57BL6J_2443193	A330076H08Rik	NCBI_Gene:320026,ENSEMBL:ENSMUSG00000109321	MGI:2443193	lncRNA gene	RIKEN cDNA A330076H08 gene
7	pseudogene	61.93824	61.93948	positive	MGI_C57BL6J_3781435	Gm3257	NCBI_Gene:108167431,ENSEMBL:ENSMUSG00000109178	MGI:3781435	pseudogene	predicted gene 3257
7	gene	61.94003	61.94011	negative	MGI_C57BL6J_3718513	Mir344-2	miRBase:MI0005495,NCBI_Gene:100124439,ENSEMBL:ENSMUSG00000093187	MGI:3718513	miRNA gene	microRNA 344-2
7	gene	61.98229	61.98236	negative	MGI_C57BL6J_4834319	Mir344g	miRBase:MI0014097,NCBI_Gene:100526507,ENSEMBL:ENSMUSG00000092850	MGI:4834319	miRNA gene	microRNA 344g
7	gene	62.03663	62.03674	negative	MGI_C57BL6J_5453208	Gm23431	ENSEMBL:ENSMUSG00000077194	MGI:5453208	snRNA gene	predicted gene, 23431
7	gene	62.04618	62.04625	negative	MGI_C57BL6J_4834320	Mir344f	miRBase:MI0014098,NCBI_Gene:100526527,ENSEMBL:ENSMUSG00000093108	MGI:4834320	miRNA gene	microRNA Mir344f
7	pseudogene	62.05596	62.05693	positive	MGI_C57BL6J_5010657	Gm18472	NCBI_Gene:100417233	MGI:5010657	pseudogene	predicted gene, 18472
7	gene	62.07872	62.07881	negative	MGI_C57BL6J_5454700	Gm24923	ENSEMBL:ENSMUSG00000094304	MGI:5454700	miRNA gene	predicted gene, 24923
7	gene	62.08522	62.08531	negative	MGI_C57BL6J_5455808	Mir344i	miRBase:MI0019317,NCBI_Gene:100885843,ENSEMBL:ENSMUSG00000095154	MGI:5455808	miRNA gene	microRNA 344i
7	gene	62.09451	62.27911	negative	MGI_C57BL6J_3647139	Gm9801	NCBI_Gene:330552,ENSEMBL:ENSMUSG00000045813	MGI:3647139	lncRNA gene	predicted gene 9801
7	gene	62.27254	62.27985	positive	MGI_C57BL6J_5591017	Gm31858	NA	NA	unclassified non-coding RNA gene	predicted gene%2c 31858
7	gene	62.29739	62.30992	negative	MGI_C57BL6J_5625280	Gm42395	NCBI_Gene:105247267	MGI:5625280	lncRNA gene	predicted gene, 42395
7	gene	62.33779	62.42382	negative	MGI_C57BL6J_5591220	Gm32061	NCBI_Gene:102634490,ENSEMBL:ENSMUSG00000108986	MGI:5591220	lncRNA gene	predicted gene, 32061
7	gene	62.34657	62.35026	positive	MGI_C57BL6J_97290	Ndn	NCBI_Gene:17984,ENSEMBL:ENSMUSG00000033585	MGI:97290	protein coding gene	necdin
7	gene	62.37698	62.38164	positive	MGI_C57BL6J_1351648	Magel2	NCBI_Gene:27385,ENSEMBL:ENSMUSG00000056972	MGI:1351648	protein coding gene	melanoma antigen, family L, 2
7	gene	62.41759	62.42014	negative	MGI_C57BL6J_2181178	Mkrn3	NCBI_Gene:22652,ENSEMBL:ENSMUSG00000070527	MGI:2181178	protein coding gene	makorin, ring finger protein, 3
7	gene	62.46187	62.46451	negative	MGI_C57BL6J_1351637	Peg12	NCBI_Gene:27412,ENSEMBL:ENSMUSG00000070526	MGI:1351637	protein coding gene	paternally expressed 12
7	pseudogene	62.47624	62.47671	positive	MGI_C57BL6J_2153586	Atp5l-ps1	NCBI_Gene:140551,ENSEMBL:ENSMUSG00000072460	MGI:2153586	pseudogene	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, pseudogene 1
7	pseudogene	62.57732	62.57822	negative	MGI_C57BL6J_3757996	Vmn2r-ps61	NCBI_Gene:665038,ENSEMBL:ENSMUSG00000108928	MGI:3757996	pseudogene	vomeronasal 2, receptor, pseudogene 61
7	gene	62.61166	62.61178	positive	MGI_C57BL6J_5452271	Gm22494	ENSEMBL:ENSMUSG00000077683	MGI:5452271	snoRNA gene	predicted gene, 22494
7	pseudogene	62.65851	62.66219	positive	MGI_C57BL6J_5825663	Gm46026	NCBI_Gene:108167510	MGI:5825663	pseudogene	predicted gene, 46026
7	pseudogene	62.68340	62.68469	negative	MGI_C57BL6J_3779855	Gm9445	NCBI_Gene:669222,ENSEMBL:ENSMUSG00000109204	MGI:3779855	pseudogene	predicted gene 9445
7	pseudogene	62.75123	62.75212	negative	MGI_C57BL6J_3644550	Gm5333	NCBI_Gene:384631	MGI:3644550	pseudogene	predicted gene 5333
7	gene	62.77842	62.82367	negative	MGI_C57BL6J_3644757	A26c2	ENSEMBL:ENSMUSG00000109344	MGI:3644757	protein coding gene	ANKRD26-like family C, member 2
7	pseudogene	62.78225	62.78315	positive	MGI_C57BL6J_5591270	Gm32111	NCBI_Gene:102634562,ENSEMBL:ENSMUSG00000109289	MGI:5591270	pseudogene	predicted gene, 32111
7	gene	63.09869	63.21257	negative	MGI_C57BL6J_99779	Chrna7	NCBI_Gene:11441,ENSEMBL:ENSMUSG00000030525	MGI:99779	protein coding gene	cholinergic receptor, nicotinic, alpha polypeptide 7
7	gene	63.13416	63.13629	negative	MGI_C57BL6J_5753317	Gm44741	ENSEMBL:ENSMUSG00000109057	MGI:5753317	unclassified gene	predicted gene 44741
7	gene	63.34469	63.44453	negative	MGI_C57BL6J_1924881	4930554H23Rik	NCBI_Gene:77631,ENSEMBL:ENSMUSG00000097682	MGI:1924881	lncRNA gene	RIKEN cDNA 4930554H23 gene
7	gene	63.44474	63.76623	positive	MGI_C57BL6J_2158505	Otud7a	NCBI_Gene:170711,ENSEMBL:ENSMUSG00000033510	MGI:2158505	protein coding gene	OTU domain containing 7A
7	pseudogene	63.54248	63.54585	positive	MGI_C57BL6J_3644921	Gm5898	NCBI_Gene:545971,ENSEMBL:ENSMUSG00000081788	MGI:3644921	pseudogene	predicted gene 5898
7	gene	63.58592	63.58602	positive	MGI_C57BL6J_5452005	Gm22228	ENSEMBL:ENSMUSG00000087989	MGI:5452005	snRNA gene	predicted gene, 22228
7	pseudogene	63.60602	63.60665	positive	MGI_C57BL6J_3781485	Gm3307	NCBI_Gene:100041386,ENSEMBL:ENSMUSG00000093751	MGI:3781485	pseudogene	predicted gene 3307
7	pseudogene	63.73698	63.73749	negative	MGI_C57BL6J_5010989	Gm18804	NCBI_Gene:100417749	MGI:5010989	pseudogene	predicted gene, 18804
7	gene	63.76587	63.76623	positive	MGI_C57BL6J_5753294	Gm44718	ENSEMBL:ENSMUSG00000108421	MGI:5753294	lncRNA gene	predicted gene 44718
7	pseudogene	63.81078	63.81138	negative	MGI_C57BL6J_3645480	Gm7482	NCBI_Gene:665083,ENSEMBL:ENSMUSG00000108700	MGI:3645480	pseudogene	predicted gene 7482
7	gene	63.82324	63.85269	negative	MGI_C57BL6J_5621908	Gm39023	NCBI_Gene:105242959	MGI:5621908	lncRNA gene	predicted gene, 39023
7	pseudogene	63.82698	63.82724	positive	MGI_C57BL6J_5753296	Gm44720	ENSEMBL:ENSMUSG00000108629	MGI:5753296	pseudogene	predicted gene 44720
7	gene	63.87306	63.87697	negative	MGI_C57BL6J_5591504	Gm32345	NCBI_Gene:102634862	MGI:5591504	lncRNA gene	predicted gene, 32345
7	gene	63.88635	63.93892	negative	MGI_C57BL6J_1354948	Klf13	NCBI_Gene:50794,ENSEMBL:ENSMUSG00000052040	MGI:1354948	protein coding gene	Kruppel-like factor 13
7	gene	63.89639	63.90054	positive	MGI_C57BL6J_5521095	Gm27252	NCBI_Gene:102634962,ENSEMBL:ENSMUSG00000098708	MGI:5521095	lncRNA gene	predicted gene 27252
7	gene	63.90172	63.90919	negative	MGI_C57BL6J_5825624	Gm45987	NCBI_Gene:108167433	MGI:5825624	lncRNA gene	predicted gene, 45987
7	gene	63.91686	63.92103	positive	MGI_C57BL6J_2686543	E030018B13Rik	NCBI_Gene:381994,ENSEMBL:ENSMUSG00000095061	MGI:2686543	protein coding gene	RIKEN cDNA E030018B13 gene
7	gene	63.94868	63.95021	positive	MGI_C57BL6J_5753203	Gm44627	ENSEMBL:ENSMUSG00000108418	MGI:5753203	unclassified gene	predicted gene 44627
7	gene	63.95639	63.95936	positive	MGI_C57BL6J_5621909	Gm39024	NCBI_Gene:105242960	MGI:5621909	lncRNA gene	predicted gene, 39024
7	gene	63.96224	63.96774	positive	MGI_C57BL6J_5753628	Gm45052	ENSEMBL:ENSMUSG00000108313	MGI:5753628	lncRNA gene	predicted gene 45052
7	gene	63.98623	64.02476	positive	MGI_C57BL6J_5591792	Gm32633	NCBI_Gene:102635243,ENSEMBL:ENSMUSG00000108393	MGI:5591792	lncRNA gene	predicted gene, 32633
7	gene	64.03425	64.04083	negative	MGI_C57BL6J_5753630	Gm45054	ENSEMBL:ENSMUSG00000108469	MGI:5753630	lncRNA gene	predicted gene 45054
7	gene	64.05729	64.05781	negative	MGI_C57BL6J_5592061	Gm32902	NCBI_Gene:102635612	MGI:5592061	lncRNA gene	predicted gene, 32902
7	gene	64.05760	64.06880	positive	MGI_C57BL6J_5313117	Gm20670	NCBI_Gene:102635542,ENSEMBL:ENSMUSG00000108620	MGI:5313117	lncRNA gene	predicted gene 20670
7	gene	64.13087	64.13437	positive	MGI_C57BL6J_5825625	Gm45988	NCBI_Gene:108167434	MGI:5825625	protein coding gene	predicted gene, 45988
7	gene	64.15384	64.26977	positive	MGI_C57BL6J_1330305	Trpm1	NCBI_Gene:17364,ENSEMBL:ENSMUSG00000030523	MGI:1330305	protein coding gene	transient receptor potential cation channel, subfamily M, member 1
7	gene	64.20209	64.20252	negative	MGI_C57BL6J_5753298	Gm44722	ENSEMBL:ENSMUSG00000108645	MGI:5753298	unclassified gene	predicted gene 44722
7	gene	64.20581	64.20591	positive	MGI_C57BL6J_2676887	Mir211	miRBase:MI0000708,NCBI_Gene:387207,ENSEMBL:ENSMUSG00000065585	MGI:2676887	miRNA gene	microRNA 211
7	gene	64.21319	64.21334	positive	MGI_C57BL6J_5753295	Gm44719	ENSEMBL:ENSMUSG00000108770	MGI:5753295	unclassified gene	predicted gene 44719
7	gene	64.24998	64.25010	negative	MGI_C57BL6J_5531128	Mir6416	miRBase:MI0021954,NCBI_Gene:102465226,ENSEMBL:ENSMUSG00000098910	MGI:5531128	miRNA gene	microRNA 6416
7	gene	64.28380	64.28440	positive	MGI_C57BL6J_5753341	Gm44765	ENSEMBL:ENSMUSG00000108422	MGI:5753341	unclassified gene	predicted gene 44765
7	gene	64.28481	64.28821	negative	MGI_C57BL6J_5753788	Gm45212	ENSEMBL:ENSMUSG00000108472	MGI:5753788	unclassified gene	predicted gene 45212
7	gene	64.28765	64.34081	positive	MGI_C57BL6J_2142292	Mtmr10	NCBI_Gene:233315,ENSEMBL:ENSMUSG00000030522	MGI:2142292	protein coding gene	myotubularin related protein 10
7	gene	64.33755	64.34596	negative	MGI_C57BL6J_5141922	Gm20457	ENSEMBL:ENSMUSG00000092187	MGI:5141922	lncRNA gene	predicted gene 20457
7	gene	64.34598	64.37414	negative	MGI_C57BL6J_3045266	Fan1	NCBI_Gene:330554,ENSEMBL:ENSMUSG00000033458	MGI:3045266	protein coding gene	FANCD2/FANCI-associated nuclease 1
7	pseudogene	64.35678	64.35748	negative	MGI_C57BL6J_5010115	Gm17930	NCBI_Gene:100416128	MGI:5010115	pseudogene	predicted gene, 17930
7	gene	64.37653	64.39227	negative	MGI_C57BL6J_1915223	Mphosph10	NCBI_Gene:67973,ENSEMBL:ENSMUSG00000030521	MGI:1915223	protein coding gene	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)
7	gene	64.39261	64.41213	positive	MGI_C57BL6J_1920974	Mcee	NCBI_Gene:73724,ENSEMBL:ENSMUSG00000033429	MGI:1920974	protein coding gene	methylmalonyl CoA epimerase
7	gene	64.50171	64.75388	positive	MGI_C57BL6J_1261791	Apba2	NCBI_Gene:11784,ENSEMBL:ENSMUSG00000030519	MGI:1261791	protein coding gene	amyloid beta (A4) precursor protein-binding, family A, member 2
7	gene	64.51531	64.51591	positive	MGI_C57BL6J_5753658	Gm45082	ENSEMBL:ENSMUSG00000108384	MGI:5753658	unclassified gene	predicted gene 45082
7	gene	64.52943	64.52990	positive	MGI_C57BL6J_5753297	Gm44721	ENSEMBL:ENSMUSG00000108721	MGI:5753297	unclassified gene	predicted gene 44721
7	gene	64.75609	65.15657	negative	MGI_C57BL6J_1917888	Fam189a1	NCBI_Gene:70638,ENSEMBL:ENSMUSG00000030518	MGI:1917888	protein coding gene	family with sequence similarity 189, member A1
7	gene	64.86705	64.87304	negative	MGI_C57BL6J_1913897	Nsmce3	NCBI_Gene:66647,ENSEMBL:ENSMUSG00000070520	MGI:1913897	protein coding gene	NSE3 homolog, SMC5-SMC6 complex component
7	gene	64.95650	64.95658	negative	MGI_C57BL6J_5455026	Gm25249	ENSEMBL:ENSMUSG00000093212	MGI:5455026	miRNA gene	predicted gene, 25249
7	gene	65.05210	65.05496	positive	MGI_C57BL6J_5592122	Gm32963	NCBI_Gene:102635688	MGI:5592122	lncRNA gene	predicted gene, 32963
7	pseudogene	65.17064	65.17190	positive	MGI_C57BL6J_5010093	Gm17908	NCBI_Gene:100416077,ENSEMBL:ENSMUSG00000108745	MGI:5010093	pseudogene	predicted gene, 17908
7	pseudogene	65.17348	65.17423	negative	MGI_C57BL6J_5010103	Gm17918	NCBI_Gene:100416106,ENSEMBL:ENSMUSG00000108445	MGI:5010103	pseudogene	predicted gene, 17918
7	gene	65.21281	65.21345	negative	MGI_C57BL6J_1922851	1810049I09Rik	NCBI_Gene:75601,ENSEMBL:ENSMUSG00000108587	MGI:1922851	lncRNA gene	RIKEN cDNA 1810049I09 gene
7	gene	65.29617	65.52781	negative	MGI_C57BL6J_98759	Tjp1	NCBI_Gene:21872,ENSEMBL:ENSMUSG00000030516	MGI:98759	protein coding gene	tight junction protein 1
7	gene	65.33132	65.33430	negative	MGI_C57BL6J_2441948	D130061D10Rik	NA	NA	unclassified gene	RIKEN cDNA D130061D10 gene
7	gene	65.36637	65.36678	negative	MGI_C57BL6J_5753370	Gm44794	ENSEMBL:ENSMUSG00000108338	MGI:5753370	unclassified gene	predicted gene 44794
7	gene	65.37164	65.37440	positive	MGI_C57BL6J_5592227	Gm33068	NCBI_Gene:102635823	MGI:5592227	lncRNA gene	predicted gene, 33068
7	pseudogene	65.40185	65.40216	positive	MGI_C57BL6J_5753371	Gm44795	ENSEMBL:ENSMUSG00000108541	MGI:5753371	pseudogene	predicted gene 44795
7	gene	65.47959	65.48122	negative	MGI_C57BL6J_5753368	Gm44792	ENSEMBL:ENSMUSG00000108533	MGI:5753368	unclassified gene	predicted gene 44792
7	pseudogene	65.58000	65.63591	negative	MGI_C57BL6J_3644883	Gm7546	ENSEMBL:ENSMUSG00000086232	MGI:3644883	pseudogene	predicted gene 7546
7	gene	65.58203	65.61935	positive	MGI_C57BL6J_3039598	BC046251	NCBI_Gene:407810,ENSEMBL:ENSMUSG00000086662	MGI:3039598	lncRNA gene	cDNA sequence BC046251
7	gene	65.64490	65.69209	positive	MGI_C57BL6J_2444486	Tarsl2	NCBI_Gene:272396,ENSEMBL:ENSMUSG00000030515	MGI:2444486	protein coding gene	threonyl-tRNA synthetase-like 2
7	gene	65.69006	65.69316	negative	MGI_C57BL6J_5592393	Gm33234	NCBI_Gene:102636057	MGI:5592393	lncRNA gene	predicted gene, 33234
7	gene	65.69117	65.70191	positive	MGI_C57BL6J_1915884	Tm2d3	NCBI_Gene:68634,ENSEMBL:ENSMUSG00000078681	MGI:1915884	protein coding gene	TM2 domain containing 3
7	gene	65.74106	65.74386	negative	MGI_C57BL6J_3642550	Gm10624	NA	NA	unclassified gene	predicted gene 10624
7	pseudogene	65.78481	65.78631	positive	MGI_C57BL6J_3648704	Gm7551	NCBI_Gene:665241,ENSEMBL:ENSMUSG00000068480	MGI:3648704	pseudogene	predicted gene 7551
7	gene	65.80311	65.80645	positive	MGI_C57BL6J_1920875	1810008I18Rik	NCBI_Gene:100503969,ENSEMBL:ENSMUSG00000100094	MGI:1920875	lncRNA gene	RIKEN cDNA 1810008I18 gene
7	gene	65.85854	65.86217	negative	MGI_C57BL6J_5313131	Gm20684	NCBI_Gene:102641467,ENSEMBL:ENSMUSG00000093405	MGI:5313131	lncRNA gene	predicted gene 20684
7	gene	65.86173	66.05039	positive	MGI_C57BL6J_102897	Pcsk6	NCBI_Gene:18553,ENSEMBL:ENSMUSG00000030513	MGI:102897	protein coding gene	proprotein convertase subtilisin/kexin type 6
7	gene	66.04360	66.06227	positive	MGI_C57BL6J_5753789	Gm45213	ENSEMBL:ENSMUSG00000108793	MGI:5753789	protein coding gene	predicted gene 45213
7	gene	66.05900	66.07459	positive	MGI_C57BL6J_1916231	Snrpa1	NCBI_Gene:68981,ENSEMBL:ENSMUSG00000030512	MGI:1916231	protein coding gene	small nuclear ribonucleoprotein polypeptide A’
7	gene	66.07890	66.07947	negative	MGI_C57BL6J_5753657	Gm45081	ENSEMBL:ENSMUSG00000108777	MGI:5753657	lncRNA gene	predicted gene 45081
7	gene	66.07965	66.08940	positive	MGI_C57BL6J_95994	Selenos	NCBI_Gene:109815,ENSEMBL:ENSMUSG00000075701	MGI:95994	protein coding gene	selenoprotein S
7	gene	66.10952	66.17312	negative	MGI_C57BL6J_5477321	Gm26827	ENSEMBL:ENSMUSG00000097634	MGI:5477321	lncRNA gene	predicted gene, 26827
7	gene	66.10952	66.17380	positive	MGI_C57BL6J_2681120	Chsy1	NCBI_Gene:269941,ENSEMBL:ENSMUSG00000032640	MGI:2681120	protein coding gene	chondroitin sulfate synthase 1
7	gene	66.11930	66.11940	negative	MGI_C57BL6J_5452819	Gm23042	ENSEMBL:ENSMUSG00000065800	MGI:5452819	snRNA gene	predicted gene, 23042
7	pseudogene	66.12695	66.12770	negative	MGI_C57BL6J_5011173	Gm18988	NCBI_Gene:100418080,ENSEMBL:ENSMUSG00000108699	MGI:5011173	pseudogene	predicted gene, 18988
7	pseudogene	66.19056	66.19084	positive	MGI_C57BL6J_5753656	Gm45080	ENSEMBL:ENSMUSG00000108686	MGI:5753656	pseudogene	predicted gene 45080
7	gene	66.22691	66.38835	negative	MGI_C57BL6J_2142227	Lrrk1	NCBI_Gene:233328,ENSEMBL:ENSMUSG00000015133	MGI:2142227	protein coding gene	leucine-rich repeat kinase 1
7	gene	66.25477	66.27780	positive	MGI_C57BL6J_5592601	Gm33442	NCBI_Gene:102636350	MGI:5592601	lncRNA gene	predicted gene, 33442
7	gene	66.28173	66.28743	positive	MGI_C57BL6J_5825626	Gm45989	NCBI_Gene:108167435	MGI:5825626	lncRNA gene	predicted gene, 45989
7	gene	66.30920	66.31250	positive	MGI_C57BL6J_5753328	Gm44752	ENSEMBL:ENSMUSG00000109119	MGI:5753328	lncRNA gene	predicted gene 44752
7	gene	66.36590	66.38631	positive	MGI_C57BL6J_3779185	Gm10974	ENSEMBL:ENSMUSG00000078677	MGI:3779185	protein coding gene	predicted gene 10974
7	gene	66.37039	66.37048	negative	MGI_C57BL6J_5453734	Gm23957	ENSEMBL:ENSMUSG00000087834	MGI:5453734	rRNA gene	predicted gene, 23957
7	gene	66.38167	66.38172	negative	MGI_C57BL6J_5530932	Mir7057	miRBase:MI0022906,NCBI_Gene:102465640,ENSEMBL:ENSMUSG00000098353	MGI:5530932	miRNA gene	microRNA 7057
7	gene	66.39089	66.42752	negative	MGI_C57BL6J_1861722	Aldh1a3	NCBI_Gene:56847,ENSEMBL:ENSMUSG00000015134	MGI:1861722	protein coding gene	aldehyde dehydrogenase family 1, subfamily A3
7	gene	66.42865	66.43049	positive	MGI_C57BL6J_5592674	Gm33515	NCBI_Gene:102636455	MGI:5592674	lncRNA gene	predicted gene, 33515
7	gene	66.44160	66.44425	positive	MGI_C57BL6J_5753329	Gm44753	ENSEMBL:ENSMUSG00000109114	MGI:5753329	lncRNA gene	predicted gene 44753
7	pseudogene	66.56523	66.56562	negative	MGI_C57BL6J_5753330	Gm44754	ENSEMBL:ENSMUSG00000109330	MGI:5753330	pseudogene	predicted gene 44754
7	gene	66.58076	66.58587	positive	MGI_C57BL6J_5592729	Gm33570	NCBI_Gene:102636528,ENSEMBL:ENSMUSG00000109039	MGI:5592729	lncRNA gene	predicted gene, 33570
7	gene	66.61532	66.61915	negative	MGI_C57BL6J_5753186	Gm44610	ENSEMBL:ENSMUSG00000109249	MGI:5753186	unclassified gene	predicted gene 44610
7	gene	66.64457	66.68965	negative	MGI_C57BL6J_2152835	Asb7	NCBI_Gene:117589,ENSEMBL:ENSMUSG00000030509	MGI:2152835	protein coding gene	ankyrin repeat and SOCS box-containing 7
7	gene	66.68977	66.71726	positive	MGI_C57BL6J_1919885	Lins1	NCBI_Gene:72635,ENSEMBL:ENSMUSG00000053091	MGI:1919885	protein coding gene	lines homolog 1
7	gene	66.72312	66.72378	positive	MGI_C57BL6J_5753674	Gm45098	ENSEMBL:ENSMUSG00000109133	MGI:5753674	unclassified gene	predicted gene 45098
7	gene	66.73310	66.82369	positive	MGI_C57BL6J_2681008	Cers3	NCBI_Gene:545975,ENSEMBL:ENSMUSG00000030510	MGI:2681008	protein coding gene	ceramide synthase 3
7	gene	66.73780	66.74044	positive	MGI_C57BL6J_3642294	Gm10623	ENSEMBL:ENSMUSG00000108846	MGI:3642294	unclassified gene	predicted gene 10623
7	gene	66.82668	66.83979	negative	MGI_C57BL6J_5592786	Gm33627	NCBI_Gene:102636611	MGI:5592786	lncRNA gene	predicted gene, 33627
7	gene	66.83974	67.15317	positive	MGI_C57BL6J_3588195	Adamts17	NCBI_Gene:233332,ENSEMBL:ENSMUSG00000058145	MGI:3588195	protein coding gene	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
7	gene	66.95982	66.96192	negative	MGI_C57BL6J_5753331	Gm44755	ENSEMBL:ENSMUSG00000109079	MGI:5753331	unclassified gene	predicted gene 44755
7	pseudogene	66.99397	66.99443	negative	MGI_C57BL6J_5753185	Gm44609	ENSEMBL:ENSMUSG00000108873	MGI:5753185	pseudogene	predicted gene 44609
7	pseudogene	67.08284	67.08375	positive	MGI_C57BL6J_5010094	Gm17909	NCBI_Gene:100416078,ENSEMBL:ENSMUSG00000108833	MGI:5010094	pseudogene	predicted gene, 17909
7	pseudogene	67.18010	67.18033	positive	MGI_C57BL6J_5753677	Gm45101	ENSEMBL:ENSMUSG00000109273	MGI:5753677	pseudogene	predicted gene 45101
7	gene	67.20408	67.22254	negative	MGI_C57BL6J_1923878	1700112J16Rik	NCBI_Gene:76628,ENSEMBL:ENSMUSG00000097527	MGI:1923878	lncRNA gene	RIKEN cDNA 1700112J16 gene
7	gene	67.22254	67.30733	positive	MGI_C57BL6J_1922349	Lysmd4	NCBI_Gene:75099,ENSEMBL:ENSMUSG00000043831	MGI:1922349	protein coding gene	LysM, putative peptidoglycan-binding, domain containing 4
7	gene	67.23116	67.37300	negative	MGI_C57BL6J_99532	Mef2a	NCBI_Gene:17258,ENSEMBL:ENSMUSG00000030557	MGI:99532	protein coding gene	myocyte enhancer factor 2A
7	gene	67.26891	67.27224	negative	MGI_C57BL6J_5753243	Gm44667	ENSEMBL:ENSMUSG00000109539	MGI:5753243	unclassified gene	predicted gene 44667
7	gene	67.36772	67.37098	negative	MGI_C57BL6J_5753244	Gm44668	ENSEMBL:ENSMUSG00000109363	MGI:5753244	unclassified gene	predicted gene 44668
7	gene	67.42890	67.44393	negative	MGI_C57BL6J_5593085	Gm33926	NCBI_Gene:102637011,ENSEMBL:ENSMUSG00000109329	MGI:5593085	lncRNA gene	predicted gene, 33926
7	gene	67.48801	67.52279	positive	MGI_C57BL6J_5621910	Gm39025	NCBI_Gene:108167436	MGI:5621910	lncRNA gene	predicted gene, 39025
7	gene	67.51341	67.64533	negative	MGI_C57BL6J_1915689	Lrrc28	NCBI_Gene:67867,ENSEMBL:ENSMUSG00000030556	MGI:1915689	protein coding gene	leucine rich repeat containing 28
7	gene	67.52434	67.54359	positive	MGI_C57BL6J_5593238	Gm34079	NCBI_Gene:102637206	MGI:5593238	lncRNA gene	predicted gene, 34079
7	gene	67.57057	67.57070	negative	MGI_C57BL6J_5453010	Gm23233	ENSEMBL:ENSMUSG00000087926	MGI:5453010	snoRNA gene	predicted gene, 23233
7	pseudogene	67.59232	67.59521	positive	MGI_C57BL6J_5592142	Gm32983	NCBI_Gene:102635717,ENSEMBL:ENSMUSG00000109342	MGI:5592142	pseudogene	predicted gene, 32983
7	pseudogene	67.63777	67.63815	positive	MGI_C57BL6J_5753676	Gm45100	ENSEMBL:ENSMUSG00000109558	MGI:5753676	pseudogene	predicted gene 45100
7	gene	67.64732	67.76291	positive	MGI_C57BL6J_1914259	Ttc23	NCBI_Gene:67009,ENSEMBL:ENSMUSG00000030555	MGI:1914259	protein coding gene	tetratricopeptide repeat domain 23
7	gene	67.67933	67.68130	negative	MGI_C57BL6J_5753245	Gm44669	ENSEMBL:ENSMUSG00000109115	MGI:5753245	unclassified gene	predicted gene 44669
7	gene	67.71149	67.71718	negative	MGI_C57BL6J_5593299	Gm34140	NCBI_Gene:102637289	MGI:5593299	lncRNA gene	predicted gene, 34140
7	gene	67.73016	67.75974	negative	MGI_C57BL6J_2661187	Synm	NCBI_Gene:233335,ENSEMBL:ENSMUSG00000030554	MGI:2661187	protein coding gene	synemin, intermediate filament protein
7	gene	67.75932	67.76017	positive	MGI_C57BL6J_5753678	Gm45102	ENSEMBL:ENSMUSG00000108871	MGI:5753678	unclassified gene	predicted gene 45102
7	gene	67.77841	67.77853	negative	MGI_C57BL6J_5453621	Gm23844	ENSEMBL:ENSMUSG00000080609	MGI:5453621	miRNA gene	predicted gene, 23844
7	pseudogene	67.78278	67.78378	negative	MGI_C57BL6J_3779751	Gm7583	ENSEMBL:ENSMUSG00000097981	MGI:3779751	pseudogene	predicted gene 7583
7	gene	67.78454	67.80414	negative	MGI_C57BL6J_1921154	4833412C05Rik	NCBI_Gene:73904,ENSEMBL:ENSMUSG00000097697	MGI:1921154	lncRNA gene	RIKEN cDNA 4833412C05 gene
7	gene	67.80158	67.83128	positive	MGI_C57BL6J_5593509	Gm34350	NCBI_Gene:102637575,ENSEMBL:ENSMUSG00000109464	MGI:5593509	lncRNA gene	predicted gene, 34350
7	gene	67.83229	67.84987	negative	MGI_C57BL6J_5621912	Gm39027	NCBI_Gene:105242964,ENSEMBL:ENSMUSG00000109193	MGI:5621912	lncRNA gene	predicted gene, 39027
7	pseudogene	67.88620	67.88658	negative	MGI_C57BL6J_5753242	Gm44666	ENSEMBL:ENSMUSG00000109152	MGI:5753242	pseudogene	predicted gene 44666
7	gene	67.95183	68.23367	positive	MGI_C57BL6J_96433	Igf1r	NCBI_Gene:16001,ENSEMBL:ENSMUSG00000005533	MGI:96433	protein coding gene	insulin-like growth factor I receptor
7	gene	68.10670	68.11335	positive	MGI_C57BL6J_2443927	D930030O05Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA D930030O05 gene
7	gene	68.23645	68.26448	negative	MGI_C57BL6J_1925694	Pgpep1l	NCBI_Gene:78444,ENSEMBL:ENSMUSG00000030553	MGI:1925694	protein coding gene	pyroglutamyl-peptidase I-like
7	gene	68.26634	68.27659	negative	MGI_C57BL6J_3801721	Gm16157	NCBI_Gene:100504026,ENSEMBL:ENSMUSG00000086628	MGI:3801721	lncRNA gene	predicted gene 16157
7	gene	68.27384	68.36309	positive	MGI_C57BL6J_3644026	Fam169b	NCBI_Gene:434197,ENSEMBL:ENSMUSG00000074071	MGI:3644026	protein coding gene	family with sequence similarity 169, member B
7	gene	68.31597	68.31703	negative	MGI_C57BL6J_1921043	4930405G09Rik	ENSEMBL:ENSMUSG00000109453	MGI:1921043	unclassified gene	RIKEN cDNA 4930405G09 gene
7	gene	68.33299	68.33553	positive	MGI_C57BL6J_5753464	Gm44888	ENSEMBL:ENSMUSG00000109096	MGI:5753464	unclassified gene	predicted gene 44888
7	gene	68.33867	68.35358	negative	MGI_C57BL6J_3801750	Gm16158	NCBI_Gene:105242966,ENSEMBL:ENSMUSG00000086410	MGI:3801750	lncRNA gene	predicted gene 16158
7	gene	68.38478	68.39203	positive	MGI_C57BL6J_5753465	Gm44889	ENSEMBL:ENSMUSG00000109458	MGI:5753465	lncRNA gene	predicted gene 44889
7	gene	68.41740	68.42736	positive	MGI_C57BL6J_1918494	4933436H12Rik	NCBI_Gene:71244,ENSEMBL:ENSMUSG00000108924	MGI:1918494	lncRNA gene	RIKEN cDNA 4933436H12 gene
7	gene	68.42921	68.49090	positive	MGI_C57BL6J_5593708	Gm34549	NCBI_Gene:102637842,ENSEMBL:ENSMUSG00000108828	MGI:5593708	lncRNA gene	predicted gene, 34549
7	gene	68.43937	68.44172	positive	MGI_C57BL6J_5753462	Gm44886	ENSEMBL:ENSMUSG00000109298	MGI:5753462	lncRNA gene	predicted gene 44886
7	pseudogene	68.59868	68.59885	negative	MGI_C57BL6J_5753463	Gm44887	ENSEMBL:ENSMUSG00000109375	MGI:5753463	pseudogene	predicted gene 44887
7	pseudogene	68.61846	68.62001	positive	MGI_C57BL6J_3644545	Gm5334	NCBI_Gene:384639,ENSEMBL:ENSMUSG00000094854	MGI:3644545	pseudogene	predicted pseudogene 5334
7	gene	68.71917	68.72647	negative	MGI_C57BL6J_5753268	Gm44692	ENSEMBL:ENSMUSG00000108876	MGI:5753268	lncRNA gene	predicted gene 44692
7	gene	68.73699	68.74924	negative	MGI_C57BL6J_1913662	Arrdc4	NCBI_Gene:66412,ENSEMBL:ENSMUSG00000042659	MGI:1913662	protein coding gene	arrestin domain containing 4
7	gene	68.79232	68.81869	positive	MGI_C57BL6J_5593771	Gm34612	NCBI_Gene:102637920	MGI:5593771	lncRNA gene	predicted gene, 34612
7	gene	68.84214	68.91602	negative	MGI_C57BL6J_5593823	Gm34664	NCBI_Gene:102637987,ENSEMBL:ENSMUSG00000109407	MGI:5593823	lncRNA gene	predicted gene, 34664
7	gene	68.95210	68.95224	negative	MGI_C57BL6J_5453572	Gm23795	ENSEMBL:ENSMUSG00000065940	MGI:5453572	snoRNA gene	predicted gene, 23795
7	gene	68.98940	69.00817	positive	MGI_C57BL6J_5753267	Gm44691	ENSEMBL:ENSMUSG00000109524	MGI:5753267	lncRNA gene	predicted gene 44691
7	gene	69.05674	69.07929	positive	MGI_C57BL6J_5593941	Gm34782	NCBI_Gene:102638148	MGI:5593941	lncRNA gene	predicted gene, 34782
7	gene	69.05682	69.06476	negative	MGI_C57BL6J_5621914	Gm39029	NCBI_Gene:105242967	MGI:5621914	lncRNA gene	predicted gene, 39029
7	pseudogene	69.20987	69.21109	positive	MGI_C57BL6J_3647517	Gm5342	NCBI_Gene:384741,ENSEMBL:ENSMUSG00000098017	MGI:3647517	pseudogene	predicted gene 5342
7	pseudogene	69.25960	69.25986	positive	MGI_C57BL6J_5753109	Gm44533	ENSEMBL:ENSMUSG00000109400	MGI:5753109	pseudogene	predicted gene 44533
7	gene	69.35437	69.40020	negative	MGI_C57BL6J_5593997	Gm34838	NCBI_Gene:102638227,ENSEMBL:ENSMUSG00000110028	MGI:5593997	lncRNA gene	predicted gene, 34838
7	gene	69.47537	69.49104	negative	MGI_C57BL6J_5621469	Gm38584	NCBI_Gene:102641929,ENSEMBL:ENSMUSG00000109153	MGI:5621469	lncRNA gene	predicted gene, 38584
7	gene	69.49609	69.55067	positive	MGI_C57BL6J_1921046	4930402F11Rik	NCBI_Gene:73796,ENSEMBL:ENSMUSG00000108885	MGI:1921046	lncRNA gene	RIKEN cDNA 4930402F11 gene
7	gene	69.49858	69.49868	negative	MGI_C57BL6J_5453592	Gm23815	ENSEMBL:ENSMUSG00000065165	MGI:5453592	snRNA gene	predicted gene, 23815
7	gene	69.57971	69.58284	positive	MGI_C57BL6J_5753111	Gm44535	ENSEMBL:ENSMUSG00000109412	MGI:5753111	unclassified gene	predicted gene 44535
7	pseudogene	69.60584	69.62697	negative	MGI_C57BL6J_3643954	Gm7627	NCBI_Gene:665410,ENSEMBL:ENSMUSG00000098246	MGI:3643954	pseudogene	predicted gene 7627
7	gene	69.79912	69.80174	negative	MGI_C57BL6J_5594368	Gm35209	NCBI_Gene:102638715	MGI:5594368	lncRNA gene	predicted gene, 35209
7	pseudogene	69.88398	69.88436	negative	MGI_C57BL6J_5753266	Gm44690	ENSEMBL:ENSMUSG00000109373	MGI:5753266	pseudogene	predicted gene 44690
7	gene	69.94890	69.95036	positive	MGI_C57BL6J_1918357	4933423L19Rik	ENSEMBL:ENSMUSG00000108821	MGI:1918357	unclassified gene	RIKEN cDNA 4933423L19 gene
7	gene	69.95778	69.95790	negative	MGI_C57BL6J_5453897	Gm24120	ENSEMBL:ENSMUSG00000077166	MGI:5453897	snoRNA gene	predicted gene, 24120
7	gene	70.17887	70.33785	negative	MGI_C57BL6J_5588842	Gm29683	NCBI_Gene:624549,ENSEMBL:ENSMUSG00000109097	MGI:5588842	lncRNA gene	predicted gene, 29683
7	gene	70.20284	70.20723	positive	MGI_C57BL6J_5594430	Gm35271	NCBI_Gene:102638792	MGI:5594430	lncRNA gene	predicted gene, 35271
7	gene	70.20730	70.21319	positive	MGI_C57BL6J_5594484	Gm35325	NCBI_Gene:102638863,ENSEMBL:ENSMUSG00000109280	MGI:5594484	lncRNA gene	predicted gene, 35325
7	gene	70.24897	70.24978	negative	MGI_C57BL6J_5580033	Gm29327	ENSEMBL:ENSMUSG00000099387	MGI:5580033	lncRNA gene	predicted gene 29327
7	gene	70.34142	70.35124	negative	MGI_C57BL6J_5621915	Gm39030	NCBI_Gene:105242968	MGI:5621915	lncRNA gene	predicted gene, 39030
7	gene	70.34524	70.34581	negative	MGI_C57BL6J_5753522	Gm44946	ENSEMBL:ENSMUSG00000109361	MGI:5753522	lncRNA gene	predicted gene 44946
7	gene	70.34755	70.34770	negative	MGI_C57BL6J_5753524	Gm44948	ENSEMBL:ENSMUSG00000109364	MGI:5753524	lncRNA gene	predicted gene 44948
7	gene	70.35194	70.36675	negative	MGI_C57BL6J_1352452	Nr2f2	NCBI_Gene:11819,ENSEMBL:ENSMUSG00000030551	MGI:1352452	protein coding gene	nuclear receptor subfamily 2, group F, member 2
7	gene	70.36491	70.48997	positive	MGI_C57BL6J_3604353	B130024G19Rik	NCBI_Gene:434198,ENSEMBL:ENSMUSG00000100005	MGI:3604353	lncRNA gene	RIKEN cDNA B130024G19 gene
7	gene	70.37202	70.38841	negative	MGI_C57BL6J_5578964	Gm28258	NCBI_Gene:102639158,ENSEMBL:ENSMUSG00000101559	MGI:5578964	lncRNA gene	predicted gene 28258
7	gene	70.42091	70.45322	negative	MGI_C57BL6J_5753108	Gm44532	ENSEMBL:ENSMUSG00000108869	MGI:5753108	lncRNA gene	predicted gene 44532
7	pseudogene	70.49084	70.49206	positive	MGI_C57BL6J_3648032	Gm7656	NCBI_Gene:665486,ENSEMBL:ENSMUSG00000097991	MGI:3648032	pseudogene	predicted gene 7656
7	gene	70.53122	70.53145	positive	MGI_C57BL6J_5753387	Gm44811	ENSEMBL:ENSMUSG00000108899	MGI:5753387	unclassified gene	predicted gene 44811
7	gene	70.54887	70.55492	positive	MGI_C57BL6J_5595001	Gm35842	ENSEMBL:ENSMUSG00000109028	MGI:5595001	lncRNA gene	predicted gene, 35842
7	gene	70.56287	70.58590	positive	MGI_C57BL6J_5753388	Gm44812	NCBI_Gene:108167437,ENSEMBL:ENSMUSG00000109021	MGI:5753388	lncRNA gene	predicted gene 44812
7	gene	70.57132	70.57441	positive	MGI_C57BL6J_5753389	Gm44813	ENSEMBL:ENSMUSG00000108836	MGI:5753389	lncRNA gene	predicted gene 44813
7	gene	70.58645	70.58944	negative	MGI_C57BL6J_5595053	Gm35894	NCBI_Gene:102639629	MGI:5595053	lncRNA gene	predicted gene, 35894
7	gene	70.59289	70.59388	positive	MGI_C57BL6J_5753385	Gm44809	ENSEMBL:ENSMUSG00000109018	MGI:5753385	unclassified gene	predicted gene 44809
7	gene	70.63861	70.63992	positive	MGI_C57BL6J_5753384	Gm44808	ENSEMBL:ENSMUSG00000109294	MGI:5753384	lncRNA gene	predicted gene 44808
7	gene	70.70812	70.71647	positive	MGI_C57BL6J_5621916	Gm39031	NCBI_Gene:105242969	MGI:5621916	lncRNA gene	predicted gene, 39031
7	gene	70.75242	70.75250	positive	MGI_C57BL6J_5454657	Gm24880	ENSEMBL:ENSMUSG00000089401	MGI:5454657	rRNA gene	predicted gene, 24880
7	gene	70.80204	70.81145	positive	MGI_C57BL6J_5621917	Gm39032	NCBI_Gene:105242970	MGI:5621917	lncRNA gene	predicted gene, 39032
7	gene	70.87091	71.07335	positive	MGI_C57BL6J_5625282	Gm42397	NCBI_Gene:105247269,ENSEMBL:ENSMUSG00000109532	MGI:5625282	lncRNA gene	predicted gene, 42397
7	pseudogene	70.91252	70.93398	negative	MGI_C57BL6J_5593942	Gm34783	NCBI_Gene:102638149,ENSEMBL:ENSMUSG00000109454	MGI:5593942	pseudogene	predicted gene, 34783
7	gene	71.03205	71.03542	negative	MGI_C57BL6J_5825627	Gm45990	NCBI_Gene:108167438	MGI:5825627	lncRNA gene	predicted gene, 45990
7	gene	71.08843	71.11654	negative	MGI_C57BL6J_5595170	Gm36011	NCBI_Gene:102639780,ENSEMBL:ENSMUSG00000109003	MGI:5595170	lncRNA gene	predicted gene, 36011
7	gene	71.09100	71.12359	positive	MGI_C57BL6J_5621918	Gm39033	NCBI_Gene:105242971,ENSEMBL:ENSMUSG00000109161	MGI:5621918	lncRNA gene	predicted gene, 39033
7	gene	71.15423	71.18686	positive	MGI_C57BL6J_5595230	Gm36071	NCBI_Gene:102639857	MGI:5595230	lncRNA gene	predicted gene, 36071
7	gene	71.21705	71.22441	positive	MGI_C57BL6J_1925130	6030442E23Rik	ENSEMBL:ENSMUSG00000100664	MGI:1925130	lncRNA gene	RIKEN cDNA 6030442E23 gene
7	gene	71.23465	71.26547	negative	MGI_C57BL6J_5595371	Gm36212	NCBI_Gene:102640046	MGI:5595371	lncRNA gene	predicted gene, 36212
7	gene	71.26427	71.37997	positive	MGI_C57BL6J_5580034	Gm29328	NCBI_Gene:108167439,ENSEMBL:ENSMUSG00000099853	MGI:5580034	lncRNA gene	predicted gene 29328
7	gene	71.28241	71.28758	negative	MGI_C57BL6J_5621919	Gm39034	NCBI_Gene:105242972	MGI:5621919	lncRNA gene	predicted gene, 39034
7	gene	71.33149	71.33404	positive	MGI_C57BL6J_5753642	Gm45066	ENSEMBL:ENSMUSG00000109548	MGI:5753642	unclassified gene	predicted gene 45066
7	pseudogene	71.33236	71.33292	negative	MGI_C57BL6J_3708755	Gm10172	ENSEMBL:ENSMUSG00000066697	MGI:3708755	pseudogene	predicted gene 10172
7	gene	71.34896	71.35148	negative	MGI_C57BL6J_3642770	Gm10295	NA	NA	protein coding gene	predicted gene 10295
7	gene	71.35145	71.39127	positive	MGI_C57BL6J_5580001	Gm29295	ENSEMBL:ENSMUSG00000099558	MGI:5580001	lncRNA gene	predicted gene 29295
7	gene	71.37301	71.37965	negative	MGI_C57BL6J_5595419	Gm36260	NCBI_Gene:102640113	MGI:5595419	lncRNA gene	predicted gene, 36260
7	gene	71.68178	71.68845	negative	MGI_C57BL6J_5753265	Gm44689	ENSEMBL:ENSMUSG00000108978	MGI:5753265	lncRNA gene	predicted gene 44689
7	pseudogene	71.69669	71.69740	positive	MGI_C57BL6J_3648706	Gm7675	NCBI_Gene:665535,ENSEMBL:ENSMUSG00000108972	MGI:3648706	pseudogene	predicted gene 7675
7	gene	71.70608	71.70661	positive	MGI_C57BL6J_5753264	Gm44688	ENSEMBL:ENSMUSG00000109388	MGI:5753264	unclassified gene	predicted gene 44688
7	pseudogene	71.71780	71.71837	positive	MGI_C57BL6J_5010173	Gm17988	NCBI_Gene:100416233,ENSEMBL:ENSMUSG00000108982	MGI:5010173	pseudogene	predicted gene, 17988
7	gene	71.90969	71.93919	positive	MGI_C57BL6J_1925406	4930441H08Rik	NCBI_Gene:78156,ENSEMBL:ENSMUSG00000108669	MGI:1925406	lncRNA gene	RIKEN cDNA 4930441H08 gene
7	gene	71.94752	71.96202	negative	MGI_C57BL6J_5595792	Gm36633	NCBI_Gene:102640608,ENSEMBL:ENSMUSG00000108480	MGI:5595792	lncRNA gene	predicted gene, 36633
7	gene	71.96117	72.02732	positive	MGI_C57BL6J_1922701	1700011C11Rik	NCBI_Gene:75451,ENSEMBL:ENSMUSG00000108800	MGI:1922701	lncRNA gene	RIKEN cDNA 1700011C11 gene
7	gene	72.07783	72.30661	negative	MGI_C57BL6J_2685335	Mctp2	NCBI_Gene:244049,ENSEMBL:ENSMUSG00000032776	MGI:2685335	protein coding gene	multiple C2 domains, transmembrane 2
7	gene	72.11046	72.11860	positive	MGI_C57BL6J_5595855	Gm36696	NCBI_Gene:102640684,ENSEMBL:ENSMUSG00000108427	MGI:5595855	lncRNA gene	predicted gene, 36696
7	gene	72.15609	72.15713	negative	MGI_C57BL6J_5804830	Gm45715	ENSEMBL:ENSMUSG00000108493	MGI:5804830	lncRNA gene	predicted gene 45715
7	gene	72.30686	72.32334	positive	MGI_C57BL6J_5621920	Gm39035	NCBI_Gene:105242973	MGI:5621920	lncRNA gene	predicted gene, 39035
7	gene	72.60199	72.60249	positive	MGI_C57BL6J_5610848	Gm37620	ENSEMBL:ENSMUSG00000103673	MGI:5610848	unclassified gene	predicted gene, 37620
7	gene	72.63721	72.63752	negative	MGI_C57BL6J_5579451	Gm28745	ENSEMBL:ENSMUSG00000100138	MGI:5579451	lncRNA gene	predicted gene 28745
7	pseudogene	72.64875	72.64934	negative	MGI_C57BL6J_3642871	Rpl17-ps10	NCBI_Gene:100042880,ENSEMBL:ENSMUSG00000081895	MGI:3642871	pseudogene	ribosomal protein L17, pseudogene 10
7	gene	72.66802	72.66836	negative	MGI_C57BL6J_5579450	Gm28744	ENSEMBL:ENSMUSG00000100670	MGI:5579450	lncRNA gene	predicted gene 28744
7	pseudogene	72.67282	72.67460	positive	MGI_C57BL6J_3648525	Kansl2-ps	NCBI_Gene:233391,ENSEMBL:ENSMUSG00000097530	MGI:3648525	pseudogene	KAT8 regulatory NSL complex subunit 2, pseudogene
7	pseudogene	72.71243	72.71364	negative	MGI_C57BL6J_3649138	Gm7693	NCBI_Gene:665570,ENSEMBL:ENSMUSG00000098195	MGI:3649138	pseudogene	predicted gene 7693
7	gene	72.74557	72.82665	negative	MGI_C57BL6J_5596024	Gm36865	NCBI_Gene:102640914	MGI:5596024	lncRNA gene	predicted gene, 36865
7	pseudogene	72.98895	72.99016	negative	MGI_C57BL6J_3647920	Gm5335	NCBI_Gene:384643,ENSEMBL:ENSMUSG00000098035	MGI:3647920	pseudogene	predicted gene 5335
7	gene	73.08942	73.09262	positive	MGI_C57BL6J_5753301	Gm44725	ENSEMBL:ENSMUSG00000108329	MGI:5753301	lncRNA gene	predicted gene 44725
7	gene	73.09775	73.10207	negative	MGI_C57BL6J_3779609	Gm6567	NCBI_Gene:625243,ENSEMBL:ENSMUSG00000108383	MGI:3779609	lncRNA gene	predicted gene 6567
7	gene	73.12445	73.12656	positive	MGI_C57BL6J_1918487	4933435G04Rik	ENSEMBL:ENSMUSG00000108345	MGI:1918487	lncRNA gene	RIKEN cDNA 4933435G04 gene
7	gene	73.18361	73.19243	positive	MGI_C57BL6J_5012268	Gm20083	NCBI_Gene:100504141,ENSEMBL:ENSMUSG00000108778	MGI:5012268	lncRNA gene	predicted gene, 20083
7	gene	73.18501	73.18539	negative	MGI_C57BL6J_5579452	Gm28746	ENSEMBL:ENSMUSG00000101843	MGI:5579452	lncRNA gene	predicted gene 28746
7	gene	73.20186	73.23869	negative	MGI_C57BL6J_5589234	Gm30075	NCBI_Gene:102631845,ENSEMBL:ENSMUSG00000108513	MGI:5589234	lncRNA gene	predicted gene, 30075
7	gene	73.31038	73.31519	positive	MGI_C57BL6J_1921147	4930429H19Rik	NCBI_Gene:100505025,ENSEMBL:ENSMUSG00000108530	MGI:1921147	lncRNA gene	RIKEN cDNA 4930429H19 gene
7	gene	73.31381	73.37577	negative	MGI_C57BL6J_2442718	A730056A06Rik	NCBI_Gene:319783,ENSEMBL:ENSMUSG00000097756	MGI:2442718	lncRNA gene	RIKEN cDNA A730056A06 gene
7	gene	73.37551	73.41990	positive	MGI_C57BL6J_2679262	Rgma	NCBI_Gene:244058,ENSEMBL:ENSMUSG00000070509	MGI:2679262	protein coding gene	repulsive guidance molecule family member A
7	gene	73.40435	73.40642	positive	MGI_C57BL6J_5753334	Gm44758	ENSEMBL:ENSMUSG00000108678	MGI:5753334	unclassified gene	predicted gene 44758
7	gene	73.42225	73.42390	positive	MGI_C57BL6J_5753221	Gm44645	ENSEMBL:ENSMUSG00000108601	MGI:5753221	unclassified gene	predicted gene 44645
7	gene	73.42664	73.54183	negative	MGI_C57BL6J_2448567	Chd2	NCBI_Gene:244059,ENSEMBL:ENSMUSG00000078671	MGI:2448567	protein coding gene	chromodomain helicase DNA binding protein 2
7	gene	73.45860	73.46063	negative	MGI_C57BL6J_5753129	Gm44553	ENSEMBL:ENSMUSG00000108741	MGI:5753129	unclassified gene	predicted gene 44553
7	gene	73.49800	73.49925	negative	MGI_C57BL6J_5753128	Gm44552	ENSEMBL:ENSMUSG00000108319	MGI:5753128	unclassified gene	predicted gene 44552
7	gene	73.52727	73.52872	negative	MGI_C57BL6J_3028079	C130083A15Rik	ENSEMBL:ENSMUSG00000108812	MGI:3028079	unclassified gene	RIKEN cDNA C130083A15 gene
7	gene	73.53801	73.55480	positive	MGI_C57BL6J_5753262	Gm44686	ENSEMBL:ENSMUSG00000108563	MGI:5753262	lncRNA gene	predicted gene 44686
7	gene	73.53920	73.55840	negative	MGI_C57BL6J_1916420	1810026B05Rik	NCBI_Gene:69170,ENSEMBL:ENSMUSG00000101970	MGI:1916420	lncRNA gene	RIKEN cDNA 1810026B05 gene
7	gene	73.58329	73.60874	negative	MGI_C57BL6J_5589308	Gm30149	NCBI_Gene:102631948	MGI:5589308	lncRNA gene	predicted gene, 30149
7	gene	73.60280	73.60411	positive	MGI_C57BL6J_5621921	Gm39036	NCBI_Gene:105242975	MGI:5621921	lncRNA gene	predicted gene, 39036
7	gene	73.60895	73.61463	positive	MGI_C57BL6J_5753310	Gm44734	ENSEMBL:ENSMUSG00000108724	MGI:5753310	lncRNA gene	predicted gene 44734
7	gene	73.61739	73.61970	negative	MGI_C57BL6J_3644623	Gm7710	NCBI_Gene:665610	MGI:3644623	unclassified gene	predicted gene 7710
7	gene	73.62670	73.62744	negative	MGI_C57BL6J_5753314	Gm44738	ENSEMBL:ENSMUSG00000108497	MGI:5753314	lncRNA gene	predicted gene 44738
7	gene	73.63062	73.63809	positive	MGI_C57BL6J_5753313	Gm44737	ENSEMBL:ENSMUSG00000108311	MGI:5753313	lncRNA gene	predicted gene 44737
7	gene	73.64598	73.64609	negative	MGI_C57BL6J_5455953	Gm26176	ENSEMBL:ENSMUSG00000065729	MGI:5455953	snRNA gene	predicted gene, 26176
7	gene	73.66205	73.66230	positive	MGI_C57BL6J_5452797	Gm23020	ENSEMBL:ENSMUSG00000089391	MGI:5452797	unclassified non-coding RNA gene	predicted gene, 23020
7	gene	73.67030	73.67239	negative	MGI_C57BL6J_5753312	Gm44736	ENSEMBL:ENSMUSG00000108550	MGI:5753312	lncRNA gene	predicted gene 44736
7	gene	73.67688	73.67830	negative	MGI_C57BL6J_5753315	Gm44739	ENSEMBL:ENSMUSG00000108473	MGI:5753315	lncRNA gene	predicted gene 44739
7	pseudogene	73.68549	73.68660	negative	MGI_C57BL6J_3643321	Gm4971	NCBI_Gene:244061,ENSEMBL:ENSMUSG00000108337	MGI:3643321	pseudogene	predicted gene 4971
7	pseudogene	73.68824	73.68917	negative	MGI_C57BL6J_5010990	Gm18805	NCBI_Gene:100417750,ENSEMBL:ENSMUSG00000108485	MGI:5010990	pseudogene	predicted gene, 18805
7	pseudogene	73.70618	73.70654	negative	MGI_C57BL6J_5753583	Gm45007	ENSEMBL:ENSMUSG00000108687	MGI:5753583	pseudogene	predicted gene 45007
7	gene	73.73793	73.74102	negative	MGI_C57BL6J_2443692	A830073O21Rik	ENSEMBL:ENSMUSG00000091890	MGI:2443692	unclassified gene	RIKEN cDNA A830073O21 gene
7	gene	73.74030	73.77692	positive	MGI_C57BL6J_3698178	Fam174b	NCBI_Gene:100038347,ENSEMBL:ENSMUSG00000078670	MGI:3698178	protein coding gene	family with sequence similarity 174, member B
7	gene	73.75459	73.75474	positive	MGI_C57BL6J_5753581	Gm45005	ENSEMBL:ENSMUSG00000108412	MGI:5753581	unclassified gene	predicted gene 45005
7	gene	73.78052	73.78415	positive	MGI_C57BL6J_5589395	Gm30236	NCBI_Gene:102632064	MGI:5589395	lncRNA gene	predicted gene, 30236
7	gene	73.78143	73.81650	negative	MGI_C57BL6J_3708756	Gm10619	NCBI_Gene:100579147,ENSEMBL:ENSMUSG00000074067	MGI:3708756	lncRNA gene	predicted gene 10619
7	pseudogene	73.78844	73.78912	positive	MGI_C57BL6J_5010858	Gm18673	NCBI_Gene:100417538	MGI:5010858	pseudogene	predicted gene, 18673
7	gene	73.79760	73.79829	negative	MGI_C57BL6J_5753582	Gm45006	ENSEMBL:ENSMUSG00000108548	MGI:5753582	unclassified gene	predicted gene 45006
7	gene	73.81655	73.83890	positive	MGI_C57BL6J_5434624	Gm21269	NCBI_Gene:100861851,ENSEMBL:ENSMUSG00000108448	MGI:5434624	lncRNA gene	predicted gene, 21269
7	gene	73.81959	73.81964	positive	MGI_C57BL6J_5562778	Mir7234	miRBase:MI0023729,NCBI_Gene:102465712,ENSEMBL:ENSMUSG00000105381	MGI:5562778	miRNA gene	microRNA 7234
7	pseudogene	73.83015	73.83281	positive	MGI_C57BL6J_5010442	Gm18257	NCBI_Gene:100416795	MGI:5010442	pseudogene	predicted gene, 18257
7	gene	73.93912	74.01373	negative	MGI_C57BL6J_106020	St8sia2	NCBI_Gene:20450,ENSEMBL:ENSMUSG00000025789	MGI:106020	protein coding gene	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
7	gene	73.94538	73.94753	negative	MGI_C57BL6J_5753579	Gm45003	ENSEMBL:ENSMUSG00000108375	MGI:5753579	unclassified gene	predicted gene 45003
7	gene	73.94842	73.95804	positive	MGI_C57BL6J_5611371	Gm38143	ENSEMBL:ENSMUSG00000102384	MGI:5611371	lncRNA gene	predicted gene, 38143
7	gene	74.03463	74.04374	negative	MGI_C57BL6J_5753580	Gm45004	ENSEMBL:ENSMUSG00000108725	MGI:5753580	lncRNA gene	predicted gene 45004
7	gene	74.23556	74.23566	positive	MGI_C57BL6J_5530841	Gm27459	ENSEMBL:ENSMUSG00000098303	MGI:5530841	miRNA gene	predicted gene, 27459
7	gene	74.27542	74.55478	negative	MGI_C57BL6J_1351867	Slco3a1	NCBI_Gene:108116,ENSEMBL:ENSMUSG00000025790	MGI:1351867	protein coding gene	solute carrier organic anion transporter family, member 3a1
7	gene	74.39270	74.41123	positive	MGI_C57BL6J_3646746	Gm7580	ENSEMBL:ENSMUSG00000085161	MGI:3646746	lncRNA gene	predicted gene 7580
7	gene	74.53668	74.53779	negative	MGI_C57BL6J_5012300	Gm20115	NA	NA	unclassified gene	predicted gene%2c 20115
7	gene	74.54283	74.54411	negative	MGI_C57BL6J_2443904	A430057L12Rik	NA	NA	unclassified gene	RIKEN cDNA A430057L12 gene
7	gene	74.55472	74.55672	positive	MGI_C57BL6J_3642374	Gm10618	NA	NA	lncRNA gene	predicted gene 10618
7	gene	74.62625	74.62751	positive	MGI_C57BL6J_5621922	Gm39037	NCBI_Gene:105242976	MGI:5621922	lncRNA gene	predicted gene, 39037
7	gene	74.69603	74.71926	negative	MGI_C57BL6J_5589543	Gm30384	NCBI_Gene:102632257	MGI:5589543	lncRNA gene	predicted gene, 30384
7	pseudogene	74.69986	74.70089	positive	MGI_C57BL6J_3647356	Gm7726	NCBI_Gene:100534317,ENSEMBL:ENSMUSG00000108570	MGI:3647356	pseudogene	predicted gene 7726
7	pseudogene	74.71419	74.71483	negative	MGI_C57BL6J_5010494	Gm18309	NCBI_Gene:100416899	MGI:5010494	pseudogene	predicted gene, 18309
7	gene	74.76599	74.77124	positive	MGI_C57BL6J_5589618	Gm30459	NCBI_Gene:102632369,ENSEMBL:ENSMUSG00000108468	MGI:5589618	lncRNA gene	predicted gene, 30459
7	gene	74.81881	74.85381	negative	MGI_C57BL6J_1923503	0610006L08Rik	NCBI_Gene:76253,ENSEMBL:ENSMUSG00000108652	MGI:1923503	lncRNA gene	RIKEN cDNA 0610006L08 gene
7	pseudogene	74.85127	74.85140	negative	MGI_C57BL6J_5753479	Gm44903	ENSEMBL:ENSMUSG00000108642	MGI:5753479	pseudogene	predicted gene 44903
7	pseudogene	74.88626	74.88707	positive	MGI_C57BL6J_5753478	Gm44902	ENSEMBL:ENSMUSG00000108716	MGI:5753478	pseudogene	predicted gene 44902
7	gene	74.96235	74.96270	negative	MGI_C57BL6J_5452103	Gm22326	ENSEMBL:ENSMUSG00000089522	MGI:5452103	unclassified non-coding RNA gene	predicted gene, 22326
7	gene	75.03019	75.07517	positive	MGI_C57BL6J_1922455	4930533N22Rik	NCBI_Gene:75205,ENSEMBL:ENSMUSG00000108803	MGI:1922455	lncRNA gene	RIKEN cDNA 4930533N22 gene
7	gene	75.11489	75.30926	negative	MGI_C57BL6J_1927338	Sv2b	NCBI_Gene:64176,ENSEMBL:ENSMUSG00000053025	MGI:1927338	protein coding gene	synaptic vesicle glycoprotein 2 b
7	gene	75.27509	75.27541	positive	MGI_C57BL6J_5454635	Gm24858	ENSEMBL:ENSMUSG00000088683	MGI:5454635	unclassified non-coding RNA gene	predicted gene, 24858
7	gene	75.30870	75.33142	positive	MGI_C57BL6J_1916204	1500012K07Rik	NCBI_Gene:68954,ENSEMBL:ENSMUSG00000097247	MGI:1916204	lncRNA gene	RIKEN cDNA 1500012K07 gene
7	pseudogene	75.36603	75.36636	positive	MGI_C57BL6J_3642846	Gm10161	NCBI_Gene:100042171,ENSEMBL:ENSMUSG00000069196	MGI:3642846	pseudogene	predicted pseudogene 10161
7	pseudogene	75.42086	75.42114	negative	MGI_C57BL6J_5753538	Gm44962	ENSEMBL:ENSMUSG00000108590	MGI:5753538	pseudogene	predicted gene 44962
7	gene	75.42708	75.43744	negative	MGI_C57BL6J_5825654	Gm46017	NCBI_Gene:108167499	MGI:5825654	lncRNA gene	predicted gene, 46017
7	gene	75.45551	75.75461	positive	MGI_C57BL6J_2676556	Akap13	NCBI_Gene:75547,ENSEMBL:ENSMUSG00000066406	MGI:2676556	protein coding gene	A kinase (PRKA) anchor protein 13
7	gene	75.48200	75.48339	positive	MGI_C57BL6J_5753410	Gm44834	ENSEMBL:ENSMUSG00000108542	MGI:5753410	unclassified gene	predicted gene 44834
7	gene	75.48486	75.48649	positive	MGI_C57BL6J_5753271	Gm44695	ENSEMBL:ENSMUSG00000108560	MGI:5753271	unclassified gene	predicted gene 44695
7	gene	75.56061	75.56379	positive	MGI_C57BL6J_5753411	Gm44835	ENSEMBL:ENSMUSG00000108557	MGI:5753411	unclassified gene	predicted gene 44835
7	gene	75.66887	75.66896	positive	MGI_C57BL6J_5455059	Gm25282	ENSEMBL:ENSMUSG00000087896	MGI:5455059	snRNA gene	predicted gene, 25282
7	gene	75.70789	75.70918	positive	MGI_C57BL6J_5753270	Gm44694	ENSEMBL:ENSMUSG00000108633	MGI:5753270	unclassified gene	predicted gene 44694
7	gene	75.75726	75.75737	negative	MGI_C57BL6J_5453028	Gm23251	ENSEMBL:ENSMUSG00000076961	MGI:5453028	miRNA gene	predicted gene, 23251
7	gene	75.76904	75.78218	negative	MGI_C57BL6J_2142134	AU020206	NCBI_Gene:108167440,ENSEMBL:ENSMUSG00000097415	MGI:2142134	lncRNA gene	expressed sequence AU020206
7	pseudogene	75.78403	75.78438	positive	MGI_C57BL6J_5477223	Gm26729	ENSEMBL:ENSMUSG00000097116	MGI:5477223	pseudogene	predicted gene, 26729
7	gene	75.84831	75.87413	positive	MGI_C57BL6J_2668031	Klhl25	NCBI_Gene:207952,ENSEMBL:ENSMUSG00000055652	MGI:2668031	protein coding gene	kelch-like 25
7	gene	76.00082	76.00288	positive	MGI_C57BL6J_5753715	Gm45139	ENSEMBL:ENSMUSG00000108495	MGI:5753715	unclassified gene	predicted gene 45139
7	gene	76.05409	76.05674	positive	MGI_C57BL6J_5753787	Gm45211	ENSEMBL:ENSMUSG00000108467	MGI:5753787	unclassified gene	predicted gene 45211
7	gene	76.22959	77.12470	positive	MGI_C57BL6J_3646469	Agbl1	NCBI_Gene:244071,ENSEMBL:ENSMUSG00000025754	MGI:3646469	protein coding gene	ATP/GTP binding protein-like 1
7	pseudogene	76.24475	76.24601	negative	MGI_C57BL6J_3779502	Gm5597	NCBI_Gene:434200,ENSEMBL:ENSMUSG00000098009	MGI:3779502	pseudogene	predicted gene 5597
7	gene	76.35971	76.36866	negative	MGI_C57BL6J_5589933	Gm30774	NCBI_Gene:102632794	MGI:5589933	lncRNA gene	predicted gene, 30774
7	pseudogene	76.37516	76.37662	negative	MGI_C57BL6J_5592228	Gm33069	NCBI_Gene:102635824	MGI:5592228	pseudogene	predicted gene, 33069
7	gene	76.61106	76.61201	positive	MGI_C57BL6J_1923979	2310001K20Rik	ENSEMBL:ENSMUSG00000108514	MGI:1923979	unclassified gene	RIKEN cDNA 2310001K20 gene
7	gene	76.69814	76.69972	negative	MGI_C57BL6J_5753786	Gm45210	ENSEMBL:ENSMUSG00000108771	MGI:5753786	unclassified gene	predicted gene 45210
7	pseudogene	77.29849	77.29900	negative	MGI_C57BL6J_5753455	Gm44879	ENSEMBL:ENSMUSG00000108611	MGI:5753455	pseudogene	predicted gene 44879
7	gene	77.41257	77.41343	positive	MGI_C57BL6J_5753184	Gm44608	ENSEMBL:ENSMUSG00000108324	MGI:5753184	unclassified gene	predicted gene 44608
7	pseudogene	77.77603	77.77678	positive	MGI_C57BL6J_5010859	Gm18674	NCBI_Gene:100417539	MGI:5010859	pseudogene	predicted gene, 18674
7	gene	77.91014	77.91032	negative	MGI_C57BL6J_5453016	Gm23239	ENSEMBL:ENSMUSG00000064940	MGI:5453016	snRNA gene	predicted gene, 23239
7	gene	78.02654	78.02664	negative	MGI_C57BL6J_5690750	Gm44358	ENSEMBL:ENSMUSG00000104817	MGI:5690750	miRNA gene	predicted gene, 44358
7	pseudogene	78.16195	78.16542	negative	MGI_C57BL6J_5825649	Gm46012	NCBI_Gene:108167483	MGI:5825649	pseudogene	predicted gene, 46012
7	gene	78.17596	78.73801	negative	MGI_C57BL6J_97385	Ntrk3	NCBI_Gene:18213,ENSEMBL:ENSMUSG00000059146	MGI:97385	protein coding gene	neurotrophic tyrosine kinase, receptor, type 3
7	gene	78.17597	78.17882	negative	MGI_C57BL6J_3041176	A330068G13Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA A330068G13 gene
7	gene	78.21161	78.21270	negative	MGI_C57BL6J_5753183	Gm44607	ENSEMBL:ENSMUSG00000108630	MGI:5753183	unclassified gene	predicted gene 44607
7	gene	78.25430	78.25542	positive	MGI_C57BL6J_1918125	4921513I08Rik	ENSEMBL:ENSMUSG00000108788	MGI:1918125	lncRNA gene	RIKEN cDNA 4921513I08 gene
7	gene	78.55285	78.57560	negative	MGI_C57BL6J_5621923	Gm39038	NCBI_Gene:105242978,ENSEMBL:ENSMUSG00000108390	MGI:5621923	lncRNA gene	predicted gene, 39038
7	gene	78.57883	78.58104	positive	MGI_C57BL6J_3641726	Gm9885	ENSEMBL:ENSMUSG00000052629	MGI:3641726	lncRNA gene	predicted gene 9885
7	gene	78.58107	78.71822	negative	MGI_C57BL6J_3041232	E430016F16Rik	NCBI_Gene:414121	MGI:3041232	lncRNA gene	RIKEN cDNA E430016F16 gene
7	gene	78.72747	78.73464	negative	MGI_C57BL6J_5590051	Gm30892	NCBI_Gene:102632946	MGI:5590051	lncRNA gene	predicted gene, 30892
7	gene	78.77524	78.78353	negative	MGI_C57BL6J_1914558	Mrpl46	NCBI_Gene:67308,ENSEMBL:ENSMUSG00000030612	MGI:1914558	protein coding gene	mitochondrial ribosomal protein L46
7	gene	78.77729	78.77837	negative	MGI_C57BL6J_5753635	Gm45059	ENSEMBL:ENSMUSG00000108536	MGI:5753635	unclassified gene	predicted gene 45059
7	gene	78.78312	78.79299	positive	MGI_C57BL6J_1915244	Mrps11	NCBI_Gene:67994,ENSEMBL:ENSMUSG00000030611	MGI:1915244	protein coding gene	mitochondrial ribosomal protein S11
7	gene	78.81829	78.82066	positive	MGI_C57BL6J_1923923	5330411O13Rik	ENSEMBL:ENSMUSG00000108603	MGI:1923923	lncRNA gene	RIKEN cDNA 5330411O13 gene
7	gene	78.82155	78.84737	negative	MGI_C57BL6J_1923625	Det1	NCBI_Gene:76375,ENSEMBL:ENSMUSG00000030610	MGI:1923625	protein coding gene	de-etiolated homolog 1 (Arabidopsis)
7	gene	78.84725	78.84753	positive	MGI_C57BL6J_1922714	1700011D18Rik	ENSEMBL:ENSMUSG00000108791	MGI:1922714	lncRNA gene	RIKEN cDNA 1700011D18 gene
7	gene	78.85549	78.85844	negative	MGI_C57BL6J_5753306	Gm44730	ENSEMBL:ENSMUSG00000108385	MGI:5753306	lncRNA gene	predicted gene 44730
7	gene	78.88828	78.88837	positive	MGI_C57BL6J_3619437	Mir7-2	miRBase:MI0000729,NCBI_Gene:723884,ENSEMBL:ENSMUSG00000065609	MGI:3619437	miRNA gene	microRNA 7-2
7	gene	78.89378	78.89578	negative	MGI_C57BL6J_5621924	Gm39039	NCBI_Gene:105242979	MGI:5621924	lncRNA gene	predicted gene, 39039
7	gene	78.89585	78.91121	positive	MGI_C57BL6J_1915298	Aen	NCBI_Gene:68048,ENSEMBL:ENSMUSG00000030609	MGI:1915298	protein coding gene	apoptosis enhancing nuclease
7	gene	78.91342	78.92040	positive	MGI_C57BL6J_1928895	Isg20	NCBI_Gene:57444,ENSEMBL:ENSMUSG00000039236	MGI:1928895	protein coding gene	interferon-stimulated protein
7	gene	78.92225	78.92389	negative	MGI_C57BL6J_5753391	Gm44815	ENSEMBL:ENSMUSG00000108670	MGI:5753391	unclassified gene	predicted gene 44815
7	gene	78.93895	78.95453	negative	MGI_C57BL6J_5590372	Gm31213	NCBI_Gene:102633372	MGI:5590372	lncRNA gene	predicted gene, 31213
7	gene	79.01805	79.05332	negative	MGI_C57BL6J_5477127	Gm26633	NCBI_Gene:102633600,ENSEMBL:ENSMUSG00000097441	MGI:5477127	lncRNA gene	predicted gene, 26633
7	gene	79.05320	79.11510	positive	MGI_C57BL6J_99602	Acan	NCBI_Gene:11595,ENSEMBL:ENSMUSG00000030607	MGI:99602	protein coding gene	aggrecan
7	gene	79.11510	79.13329	negative	MGI_C57BL6J_1914916	Hapln3	NCBI_Gene:67666,ENSEMBL:ENSMUSG00000030606	MGI:1914916	protein coding gene	hyaluronan and proteoglycan link protein 3
7	gene	79.13377	79.14906	negative	MGI_C57BL6J_102768	Mfge8	NCBI_Gene:17304,ENSEMBL:ENSMUSG00000030605	MGI:102768	protein coding gene	milk fat globule-EGF factor 8 protein
7	gene	79.24382	79.24758	negative	MGI_C57BL6J_5621925	Gm39040	NCBI_Gene:105242980	MGI:5621925	lncRNA gene	predicted gene, 39040
7	gene	79.27168	79.27313	negative	MGI_C57BL6J_5590669	Gm31510	NCBI_Gene:102633760,ENSEMBL:ENSMUSG00000108387	MGI:5590669	lncRNA gene	predicted gene, 31510
7	gene	79.27320	79.36551	positive	MGI_C57BL6J_1914344	Abhd2	NCBI_Gene:54608,ENSEMBL:ENSMUSG00000039202	MGI:1914344	protein coding gene	abhydrolase domain containing 2
7	gene	79.27777	79.28078	positive	MGI_C57BL6J_5753215	Gm44639	ENSEMBL:ENSMUSG00000108521	MGI:5753215	unclassified gene	predicted gene 44639
7	gene	79.29895	79.30293	positive	MGI_C57BL6J_5621926	Gm39041	NCBI_Gene:105242981,ENSEMBL:ENSMUSG00000108460	MGI:5621926	lncRNA gene	predicted gene, 39041
7	gene	79.35249	79.35274	negative	MGI_C57BL6J_5454001	Gm24224	ENSEMBL:ENSMUSG00000089453	MGI:5454001	unclassified non-coding RNA gene	predicted gene, 24224
7	gene	79.37486	79.38705	negative	MGI_C57BL6J_97930	Rlbp1	NCBI_Gene:19771,ENSEMBL:ENSMUSG00000039194	MGI:97930	protein coding gene	retinaldehyde binding protein 1
7	gene	79.39193	79.45027	positive	MGI_C57BL6J_2384790	Fanci	NCBI_Gene:208836,ENSEMBL:ENSMUSG00000039187	MGI:2384790	protein coding gene	Fanconi anemia, complementation group I
7	gene	79.39650	79.39913	negative	MGI_C57BL6J_5590812	Gm31653	NCBI_Gene:102633956	MGI:5590812	lncRNA gene	predicted gene, 31653
7	pseudogene	79.41126	79.41261	negative	MGI_C57BL6J_3802069	Gm16017	NCBI_Gene:102633841,ENSEMBL:ENSMUSG00000082400	MGI:3802069	pseudogene	predicted gene 16017
7	gene	79.44623	79.46636	negative	MGI_C57BL6J_1196389	Polg	NCBI_Gene:18975,ENSEMBL:ENSMUSG00000039176	MGI:1196389	protein coding gene	polymerase (DNA directed), gamma
7	gene	79.46641	79.46854	positive	MGI_C57BL6J_3642103	Gm10616	ENSEMBL:ENSMUSG00000108599	MGI:3642103	unclassified gene	predicted gene 10616
7	gene	79.46642	79.46649	positive	MGI_C57BL6J_4413732	n-TRtcg5	NCBI_Gene:102467252	MGI:4413732	tRNA gene	nuclear encoded tRNA arginine 5 (anticodon TCG)
7	gene	79.50003	79.53440	positive	MGI_C57BL6J_2142071	Mir9-3hg	NCBI_Gene:101694,ENSEMBL:ENSMUSG00000097023	MGI:2142071	lncRNA gene	Mir9-3 host gene
7	gene	79.50526	79.50535	positive	MGI_C57BL6J_3619443	Mir9-3	miRBase:MI0000721,NCBI_Gene:723968,ENSEMBL:ENSMUSG00000093238	MGI:3619443	miRNA gene	microRNA 9-3
7	gene	79.51036	79.51140	positive	MGI_C57BL6J_3028065	A330074H02Rik	ENSEMBL:ENSMUSG00000102995	MGI:3028065	unclassified gene	RIKEN cDNA A330074H02 gene
7	gene	79.51292	79.51326	positive	MGI_C57BL6J_1925652	2900037B21Rik	ENSEMBL:ENSMUSG00000103663	MGI:1925652	unclassified gene	RIKEN cDNA 2900037B21 gene
7	gene	79.51688	79.51876	positive	MGI_C57BL6J_5610836	Gm37608	ENSEMBL:ENSMUSG00000103831	MGI:5610836	unclassified gene	predicted gene, 37608
7	gene	79.53574	79.56003	positive	MGI_C57BL6J_5594199	Gm35040	NCBI_Gene:102638488,ENSEMBL:ENSMUSG00000108616	MGI:5594199	lncRNA gene	predicted gene, 35040
7	gene	79.54284	79.55062	negative	MGI_C57BL6J_5590899	Gm31740	NCBI_Gene:102634064	MGI:5590899	lncRNA gene	predicted gene, 31740
7	gene	79.57775	79.57908	negative	MGI_C57BL6J_5753744	Gm45168	ENSEMBL:ENSMUSG00000108373	MGI:5753744	lncRNA gene	predicted gene 45168
7	gene	79.58665	79.59261	negative	MGI_C57BL6J_5753745	Gm45169	ENSEMBL:ENSMUSG00000108776	MGI:5753745	lncRNA gene	predicted gene 45169
7	gene	79.59336	79.61766	negative	MGI_C57BL6J_1888517	Rhcg	NCBI_Gene:56315,ENSEMBL:ENSMUSG00000030549	MGI:1888517	protein coding gene	Rhesus blood group-associated C glycoprotein
7	gene	79.60201	79.60368	negative	MGI_C57BL6J_5753746	Gm45170	ENSEMBL:ENSMUSG00000108318	MGI:5753746	unclassified gene	predicted gene 45170
7	pseudogene	79.63470	79.63596	positive	MGI_C57BL6J_5010025	Gm17840	NCBI_Gene:100415959	MGI:5010025	pseudogene	predicted gene, 17840
7	gene	79.66020	79.69815	positive	MGI_C57BL6J_1924261	Ticrr	NCBI_Gene:77011,ENSEMBL:ENSMUSG00000046591	MGI:1924261	protein coding gene	TOPBP1-interacting checkpoint and replication regulator
7	gene	79.69810	79.71577	negative	MGI_C57BL6J_1098239	Kif7	NCBI_Gene:16576,ENSEMBL:ENSMUSG00000050382	MGI:1098239	protein coding gene	kinesin family member 7
7	gene	79.71028	79.71236	positive	MGI_C57BL6J_3696417	9330171B17Rik	ENSEMBL:ENSMUSG00000039133	MGI:3696417	lncRNA gene	RIKEN cDNA 9330171B17 gene
7	gene	79.72022	79.73290	negative	MGI_C57BL6J_1890505	Plin1	NCBI_Gene:103968,ENSEMBL:ENSMUSG00000030546	MGI:1890505	protein coding gene	perilipin 1
7	gene	79.73596	79.74313	negative	MGI_C57BL6J_1338788	Pex11a	NCBI_Gene:18631,ENSEMBL:ENSMUSG00000030545	MGI:1338788	protein coding gene	peroxisomal biogenesis factor 11 alpha
7	gene	79.74068	79.74202	positive	MGI_C57BL6J_5753282	Gm44706	ENSEMBL:ENSMUSG00000108425	MGI:5753282	lncRNA gene	predicted gene 44706
7	gene	79.74316	79.78595	positive	MGI_C57BL6J_3646885	Wdr93	NCBI_Gene:626359,ENSEMBL:ENSMUSG00000039099	MGI:3646885	protein coding gene	WD repeat domain 93
7	pseudogene	79.79018	79.79064	negative	MGI_C57BL6J_5753281	Gm44705	NCBI_Gene:108167500,ENSEMBL:ENSMUSG00000108506	MGI:5753281	pseudogene	predicted gene 44705
7	gene	79.79224	79.79379	negative	MGI_C57BL6J_107785	Mesp1	NCBI_Gene:17292,ENSEMBL:ENSMUSG00000030544	MGI:107785	protein coding gene	mesoderm posterior 1
7	gene	79.81073	79.81344	positive	MGI_C57BL6J_1096325	Mesp2	NCBI_Gene:17293,ENSEMBL:ENSMUSG00000030543	MGI:1096325	protein coding gene	mesoderm posterior 2
7	gene	79.82180	79.86106	negative	MGI_C57BL6J_5000466	Anpep	NCBI_Gene:16790,ENSEMBL:ENSMUSG00000039062	MGI:5000466	protein coding gene	alanyl (membrane) aminopeptidase
7	gene	79.83059	79.83187	negative	MGI_C57BL6J_5753550	Gm44974	ENSEMBL:ENSMUSG00000108476	MGI:5753550	unclassified gene	predicted gene 44974
7	gene	79.87533	79.92065	negative	MGI_C57BL6J_1337060	Ap3s2	NCBI_Gene:11778,ENSEMBL:ENSMUSG00000063801	MGI:1337060	protein coding gene	adaptor-related protein complex 3, sigma 2 subunit
7	gene	79.91694	79.92064	positive	MGI_C57BL6J_5477140	Gm26646	ENSEMBL:ENSMUSG00000097685	MGI:5477140	lncRNA gene	predicted gene, 26646
7	gene	79.92072	79.92252	positive	MGI_C57BL6J_1918589	5430400D12Rik	ENSEMBL:ENSMUSG00000097699	MGI:1918589	lncRNA gene	RIKEN cDNA 5430400D12 gene
7	gene	79.92257	79.92487	negative	MGI_C57BL6J_5753526	Gm44950	ENSEMBL:ENSMUSG00000108350	MGI:5753526	unclassified gene	predicted gene 44950
7	gene	79.92536	79.93536	negative	MGI_C57BL6J_1917670	Arpin	NCBI_Gene:70420,ENSEMBL:ENSMUSG00000039043	MGI:1917670	protein coding gene	actin-related protein 2/3 complex inhibitor
7	gene	79.93552	79.93901	positive	MGI_C57BL6J_5591125	Gm31966	NCBI_Gene:102634366	MGI:5591125	lncRNA gene	predicted gene, 31966
7	gene	79.94919	79.94928	positive	MGI_C57BL6J_5454318	Gm24541	ENSEMBL:ENSMUSG00000077059	MGI:5454318	miRNA gene	predicted gene, 24541
7	gene	80.02481	80.09417	positive	MGI_C57BL6J_1921747	Zfp710	NCBI_Gene:209225,ENSEMBL:ENSMUSG00000048897	MGI:1921747	protein coding gene	zinc finger protein 710
7	gene	80.03670	80.03873	positive	MGI_C57BL6J_5753527	Gm44951	ENSEMBL:ENSMUSG00000108365	MGI:5753527	unclassified gene	predicted gene 44951
7	gene	80.06271	80.07527	negative	MGI_C57BL6J_5434414	Gm21057	NCBI_Gene:100859962,ENSEMBL:ENSMUSG00000108714	MGI:5434414	lncRNA gene	predicted gene, 21057
7	gene	80.08898	80.09043	negative	MGI_C57BL6J_5753525	Gm44949	ENSEMBL:ENSMUSG00000108655	MGI:5753525	lncRNA gene	predicted gene 44949
7	gene	80.09485	80.11584	negative	MGI_C57BL6J_96414	Idh2	NCBI_Gene:269951,ENSEMBL:ENSMUSG00000030541	MGI:96414	protein coding gene	isocitrate dehydrogenase 2 (NADP+), mitochondrial
7	gene	80.11080	80.11263	negative	MGI_C57BL6J_5753779	Gm45203	ENSEMBL:ENSMUSG00000108494	MGI:5753779	unclassified gene	predicted gene 45203
7	gene	80.15517	80.15677	positive	MGI_C57BL6J_5753778	Gm45202	ENSEMBL:ENSMUSG00000108757	MGI:5753778	lncRNA gene	predicted gene 45202
7	gene	80.18684	80.22665	positive	MGI_C57BL6J_107559	Sema4b	NCBI_Gene:20352,ENSEMBL:ENSMUSG00000030539	MGI:107559	protein coding gene	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
7	gene	80.20939	80.21168	positive	MGI_C57BL6J_5753782	Gm45206	ENSEMBL:ENSMUSG00000108389	MGI:5753782	unclassified gene	predicted gene 45206
7	gene	80.22715	80.23281	negative	MGI_C57BL6J_1344418	Cib1	NCBI_Gene:23991,ENSEMBL:ENSMUSG00000030538	MGI:1344418	protein coding gene	calcium and integrin binding 1 (calmyrin)
7	gene	80.23287	80.24206	positive	MGI_C57BL6J_2443429	Gdpgp1	NCBI_Gene:269952,ENSEMBL:ENSMUSG00000050973	MGI:2443429	protein coding gene	GDP-D-glucose phosphorylase 1
7	pseudogene	80.23768	80.23794	negative	MGI_C57BL6J_3782951	Gm15504	ENSEMBL:ENSMUSG00000082954	MGI:3782951	pseudogene	predicted gene 15504
7	gene	80.24638	80.26082	positive	MGI_C57BL6J_1920845	Ttll13	NCBI_Gene:269954,ENSEMBL:ENSMUSG00000045467	MGI:1920845	protein coding gene	tubulin tyrosine ligase-like family, member 13
7	gene	80.26122	80.26538	positive	MGI_C57BL6J_1933212	Ngrn	NCBI_Gene:83485,ENSEMBL:ENSMUSG00000047084	MGI:1933212	protein coding gene	neugrin, neurite outgrowth associated
7	gene	80.26963	80.29175	positive	MGI_C57BL6J_2446237	Vps33b	NCBI_Gene:233405,ENSEMBL:ENSMUSG00000030534	MGI:2446237	protein coding gene	vacuolar protein sorting 33B
7	gene	80.29323	80.32470	negative	MGI_C57BL6J_2444156	Rccd1	NCBI_Gene:269955,ENSEMBL:ENSMUSG00000038930	MGI:2444156	protein coding gene	RCC1 domain containing 1
7	gene	80.29445	80.31626	positive	MGI_C57BL6J_1858961	Prc1	NCBI_Gene:233406,ENSEMBL:ENSMUSG00000038943	MGI:1858961	protein coding gene	protein regulator of cytokinesis 1
7	gene	80.29773	80.29962	negative	MGI_C57BL6J_1917985	6330403N20Rik	ENSEMBL:ENSMUSG00000097912	MGI:1917985	lncRNA gene	RIKEN cDNA 6330403N20 gene
7	gene	80.32529	80.34100	negative	MGI_C57BL6J_2142246	Unc45a	NCBI_Gene:101869,ENSEMBL:ENSMUSG00000030533	MGI:2142246	protein coding gene	unc-45 myosin chaperone A
7	gene	80.34307	80.35055	positive	MGI_C57BL6J_1915945	Hddc3	NCBI_Gene:68695,ENSEMBL:ENSMUSG00000030532	MGI:1915945	protein coding gene	HD domain containing 3
7	pseudogene	80.34408	80.34799	negative	MGI_C57BL6J_5010495	Gm18310	NCBI_Gene:100416900,ENSEMBL:ENSMUSG00000108555	MGI:5010495	pseudogene	predicted gene, 18310
7	gene	80.34910	80.37149	negative	MGI_C57BL6J_2150656	Man2a2	NCBI_Gene:140481,ENSEMBL:ENSMUSG00000038886	MGI:2150656	protein coding gene	mannosidase 2, alpha 2
7	gene	80.37776	80.38795	negative	MGI_C57BL6J_95514	Fes	NCBI_Gene:14159,ENSEMBL:ENSMUSG00000053158	MGI:95514	protein coding gene	feline sarcoma oncogene
7	gene	80.38859	80.40544	negative	MGI_C57BL6J_97513	Furin	NCBI_Gene:18550,ENSEMBL:ENSMUSG00000030530	MGI:97513	protein coding gene	furin (paired basic amino acid cleaving enzyme)
7	gene	80.40427	80.40658	positive	MGI_C57BL6J_5753427	Gm44851	ENSEMBL:ENSMUSG00000108436	MGI:5753427	lncRNA gene	predicted gene 44851
7	pseudogene	80.42921	80.43074	positive	MGI_C57BL6J_3782993	Gm15544	NCBI_Gene:384647,ENSEMBL:ENSMUSG00000081664	MGI:3782993	pseudogene	predicted gene 15544
7	gene	80.45473	80.53515	negative	MGI_C57BL6J_1328362	Blm	NCBI_Gene:12144,ENSEMBL:ENSMUSG00000030528	MGI:1328362	protein coding gene	Bloom syndrome, RecQ like helicase
7	pseudogene	80.50656	80.50827	positive	MGI_C57BL6J_4936891	Ndufab1-ps	NCBI_Gene:102634451,ENSEMBL:ENSMUSG00000091989	MGI:4936891	pseudogene	NADH:ubiquinone oxidoreductase subunit AB1b
7	gene	80.54316	80.55607	negative	MGI_C57BL6J_5625283	Gm42398	NCBI_Gene:105247270	MGI:5625283	lncRNA gene	predicted gene, 42398
7	gene	80.58663	80.68894	negative	MGI_C57BL6J_1917711	Crtc3	NCBI_Gene:70461,ENSEMBL:ENSMUSG00000030527	MGI:1917711	protein coding gene	CREB regulated transcription coactivator 3
7	gene	80.60324	80.60378	negative	MGI_C57BL6J_5753507	Gm44931	ENSEMBL:ENSMUSG00000108643	MGI:5753507	unclassified gene	predicted gene 44931
7	gene	80.63602	80.64438	positive	MGI_C57BL6J_3802014	Gm15880	NCBI_Gene:100504375,ENSEMBL:ENSMUSG00000084821	MGI:3802014	lncRNA gene	predicted gene 15880
7	gene	80.71158	80.82597	negative	MGI_C57BL6J_1352757	Iqgap1	NCBI_Gene:29875,ENSEMBL:ENSMUSG00000030536	MGI:1352757	protein coding gene	IQ motif containing GTPase activating protein 1
7	gene	80.75182	80.75861	positive	MGI_C57BL6J_5753225	Gm44649	ENSEMBL:ENSMUSG00000108321	MGI:5753225	lncRNA gene	predicted gene 44649
7	pseudogene	80.75345	80.75409	positive	MGI_C57BL6J_5010577	Gm18392	NCBI_Gene:100417062	MGI:5010577	pseudogene	predicted gene, 18392
7	gene	80.86074	80.87868	positive	MGI_C57BL6J_99176	Zscan2	NCBI_Gene:22691,ENSEMBL:ENSMUSG00000038797	MGI:99176	protein coding gene	zinc finger and SCAN domain containing 2
7	gene	80.89072	80.90127	negative	MGI_C57BL6J_1919218	Wdr73	NCBI_Gene:71968,ENSEMBL:ENSMUSG00000025722	MGI:1919218	protein coding gene	WD repeat domain 73
7	gene	80.89369	80.89435	positive	MGI_C57BL6J_5591271	Gm32112	NCBI_Gene:102634563	MGI:5591271	lncRNA gene	predicted gene, 32112
7	gene	80.90223	80.91368	negative	MGI_C57BL6J_1915289	Nmb	NCBI_Gene:68039,ENSEMBL:ENSMUSG00000025723	MGI:1915289	protein coding gene	neuromedin B
7	gene	80.90489	80.94778	negative	MGI_C57BL6J_1929464	Sec11a	NCBI_Gene:56529,ENSEMBL:ENSMUSG00000025724	MGI:1929464	protein coding gene	SEC11 homolog A, signal peptidase complex subunit
7	pseudogene	80.90783	80.90815	positive	MGI_C57BL6J_3801768	Gm16171	ENSEMBL:ENSMUSG00000081372	MGI:3801768	pseudogene	predicted gene 16171
7	gene	80.91037	80.91417	negative	MGI_C57BL6J_5804833	Gm45718	ENSEMBL:ENSMUSG00000109390	MGI:5804833	unclassified gene	predicted gene 45718
7	gene	80.95641	80.98143	negative	MGI_C57BL6J_5591337	Gm32178	NCBI_Gene:102634642	MGI:5591337	lncRNA gene	predicted gene, 32178
7	pseudogene	80.97988	80.98129	positive	MGI_C57BL6J_5010967	Gm18782	NCBI_Gene:100417720,ENSEMBL:ENSMUSG00000109367	MGI:5010967	pseudogene	predicted gene, 18782
7	gene	80.98085	80.99341	negative	MGI_C57BL6J_5753475	Gm44899	ENSEMBL:ENSMUSG00000109008	MGI:5753475	lncRNA gene	predicted gene 44899
7	gene	80.99368	81.04516	positive	MGI_C57BL6J_2443541	Zfp592	NCBI_Gene:233410,ENSEMBL:ENSMUSG00000005621	MGI:2443541	protein coding gene	zinc finger protein 592
7	gene	80.99468	80.99531	positive	MGI_C57BL6J_5753543	Gm44967	ENSEMBL:ENSMUSG00000109302	MGI:5753543	unclassified gene	predicted gene 44967
7	gene	81.05747	81.10561	positive	MGI_C57BL6J_2151224	Alpk3	NCBI_Gene:116904,ENSEMBL:ENSMUSG00000038763	MGI:2151224	protein coding gene	alpha-kinase 3
7	gene	81.05911	81.06631	positive	MGI_C57BL6J_3801726	Platr32	ENSEMBL:ENSMUSG00000085194	MGI:3801726	lncRNA gene	pluripotency associated transcript 32
7	gene	81.11327	81.17042	positive	MGI_C57BL6J_3605073	Slc28a1	NCBI_Gene:434203,ENSEMBL:ENSMUSG00000025726	MGI:3605073	protein coding gene	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1
7	pseudogene	81.16127	81.16175	negative	MGI_C57BL6J_3648526	Ndufs6b	NCBI_Gene:623286,ENSEMBL:ENSMUSG00000083820	MGI:3648526	pseudogene	NADH:ubiquinone oxidoreductase subunit S6B
7	gene	81.20501	81.21088	positive	MGI_C57BL6J_5753544	Gm44968	NCBI_Gene:108167441,ENSEMBL:ENSMUSG00000109323	MGI:5753544	lncRNA gene	predicted gene 44968
7	gene	81.21219	81.21317	negative	MGI_C57BL6J_1921473	1700023D08Rik	NA	NA	unclassified gene	RIKEN cDNA 1700023D08 gene
7	gene	81.21360	81.33453	positive	MGI_C57BL6J_1277116	Pde8a	NCBI_Gene:18584,ENSEMBL:ENSMUSG00000025584	MGI:1277116	protein coding gene	phosphodiesterase 8A
7	pseudogene	81.22206	81.22289	negative	MGI_C57BL6J_3648560	Gm7180	NCBI_Gene:636544,ENSEMBL:ENSMUSG00000083774	MGI:3648560	pseudogene	predicted pseudogene 7180
7	gene	81.34273	81.34525	negative	MGI_C57BL6J_1309526	Rps17	NCBI_Gene:20068,ENSEMBL:ENSMUSG00000061787	MGI:1309526	protein coding gene	ribosomal protein S17
7	gene	81.34703	81.45694	negative	MGI_C57BL6J_108442	Cpeb1	NCBI_Gene:12877,ENSEMBL:ENSMUSG00000025586	MGI:108442	protein coding gene	cytoplasmic polyadenylation element binding protein 1
7	pseudogene	81.38871	81.38962	positive	MGI_C57BL6J_5011107	Gm18922	NCBI_Gene:100417965	MGI:5011107	pseudogene	predicted gene, 18922
7	pseudogene	81.44590	81.44673	positive	MGI_C57BL6J_3783074	Rpl7a-ps9	NCBI_Gene:623355,ENSEMBL:ENSMUSG00000081747	MGI:3783074	pseudogene	ribosomal protein L7A, pseudogene 9
7	gene	81.45589	81.45801	positive	MGI_C57BL6J_1922988	Cpeb1os1	ENSEMBL:ENSMUSG00000109401	MGI:1922988	unclassified gene	cytoplasmic polyadenylation element binding protein 1, opposite strand 1
7	gene	81.46040	81.49404	negative	MGI_C57BL6J_1100869	Ap3b2	NCBI_Gene:11775,ENSEMBL:ENSMUSG00000062444	MGI:1100869	protein coding gene	adaptor-related protein complex 3, beta 2 subunit
7	gene	81.49427	81.49837	negative	MGI_C57BL6J_3510776	BC048679	NCBI_Gene:210321,ENSEMBL:ENSMUSG00000061877	MGI:3510776	protein coding gene	cDNA sequence BC048679
7	gene	81.50130	81.50518	positive	MGI_C57BL6J_5825628	Gm45991	NCBI_Gene:108167442	MGI:5825628	lncRNA gene	predicted gene, 45991
7	gene	81.52355	81.53150	positive	MGI_C57BL6J_1920242	2900076A07Rik	NCBI_Gene:100504421,ENSEMBL:ENSMUSG00000097277	MGI:1920242	lncRNA gene	RIKEN cDNA 2900076A07 gene
7	gene	81.52985	81.52999	positive	MGI_C57BL6J_3837345	Mir1839	miRBase:MI0009991,NCBI_Gene:100316717,ENSEMBL:ENSMUSG00000104618,ENSEMBL:ENSMUSG00000093107	MGI:3837345	miRNA gene	microRNA 1839
7	gene	81.53031	81.53252	negative	MGI_C57BL6J_5611057	Gm37829	ENSEMBL:ENSMUSG00000104453	MGI:5611057	unclassified gene	predicted gene, 37829
7	gene	81.53331	81.56698	negative	MGI_C57BL6J_2444310	Fsd2	NCBI_Gene:244091,ENSEMBL:ENSMUSG00000038663	MGI:2444310	protein coding gene	fibronectin type III and SPRY domain containing 2
7	gene	81.57122	81.59684	positive	MGI_C57BL6J_2142282	Whamm	NCBI_Gene:434204,ENSEMBL:ENSMUSG00000045795	MGI:2142282	protein coding gene	WAS protein homolog associated with actin, golgi membranes and microtubules
7	gene	81.59089	81.59203	positive	MGI_C57BL6J_5804813	Gm45698	ENSEMBL:ENSMUSG00000109428	MGI:5804813	unclassified gene	predicted gene 45698
7	gene	81.60048	81.70753	negative	MGI_C57BL6J_1347354	Homer2	NCBI_Gene:26557,ENSEMBL:ENSMUSG00000025813	MGI:1347354	protein coding gene	homer scaffolding protein 2
7	gene	81.61011	81.61417	positive	MGI_C57BL6J_5753146	Gm44570	NCBI_Gene:108167443,ENSEMBL:ENSMUSG00000109194	MGI:5753146	lncRNA gene	predicted gene 44570
7	gene	81.66973	81.66984	positive	MGI_C57BL6J_5455926	Gm26149	ENSEMBL:ENSMUSG00000088057	MGI:5455926	snRNA gene	predicted gene, 26149
7	gene	81.70815	81.71687	negative	MGI_C57BL6J_5591738	Gm32579	NCBI_Gene:102635176	MGI:5591738	lncRNA gene	predicted gene, 32579
7	gene	81.73140	81.73763	positive	MGI_C57BL6J_5625285	Gm42400	NCBI_Gene:105247272	MGI:5625285	lncRNA gene	predicted gene, 42400
7	pseudogene	81.74235	81.74432	positive	MGI_C57BL6J_5010991	Gm18806	NCBI_Gene:100417751,ENSEMBL:ENSMUSG00000109519	MGI:5010991	pseudogene	predicted gene, 18806
7	gene	81.76292	81.76949	positive	MGI_C57BL6J_1914398	Ramac	NCBI_Gene:67148,ENSEMBL:ENSMUSG00000038646	MGI:1914398	protein coding gene	RNA guanine-7 methyltransferase activating subunit
7	gene	81.78028	81.79047	negative	MGI_C57BL6J_1914540	3110040N11Rik	NCBI_Gene:67290,ENSEMBL:ENSMUSG00000025102	MGI:1914540	protein coding gene	RIKEN cDNA 3110040N11 gene
7	gene	81.78948	81.79469	positive	MGI_C57BL6J_5753592	Gm45016	ENSEMBL:ENSMUSG00000109485	MGI:5753592	lncRNA gene	predicted gene 45016
7	gene	81.78974	81.79032	negative	MGI_C57BL6J_5804960	Gm45845	ENSEMBL:ENSMUSG00000109427	MGI:5804960	unclassified gene	predicted gene 45845
7	gene	81.79207	81.82950	negative	MGI_C57BL6J_1933765	Btbd1	NCBI_Gene:83962,ENSEMBL:ENSMUSG00000025103	MGI:1933765	protein coding gene	BTB (POZ) domain containing 1
7	gene	81.83166	81.84906	positive	MGI_C57BL6J_5591854	Gm32695	NCBI_Gene:102635324	MGI:5591854	lncRNA gene	predicted gene, 32695
7	gene	81.85553	81.85579	negative	MGI_C57BL6J_3642884	Gm10160	ENSEMBL:ENSMUSG00000066378	MGI:3642884	protein coding gene	predicted gene 10160
7	gene	81.85900	81.88443	positive	MGI_C57BL6J_1933209	Tm6sf1	NCBI_Gene:107769,ENSEMBL:ENSMUSG00000038623	MGI:1933209	protein coding gene	transmembrane 6 superfamily member 1
7	gene	81.86029	81.86253	negative	MGI_C57BL6J_5753590	Gm45014	ENSEMBL:ENSMUSG00000109110	MGI:5753590	lncRNA gene	predicted gene 45014
7	gene	81.87420	81.87652	positive	MGI_C57BL6J_5804982	Gm45867	ENSEMBL:ENSMUSG00000109243	MGI:5804982	unclassified gene	predicted gene 45867
7	gene	81.88125	81.93447	negative	MGI_C57BL6J_1352760	Hdgfl3	NCBI_Gene:29877,ENSEMBL:ENSMUSG00000025104	MGI:1352760	protein coding gene	HDGF like 3
7	gene	81.91894	81.92035	negative	MGI_C57BL6J_5753664	Gm45088	ENSEMBL:ENSMUSG00000109090	MGI:5753664	unclassified gene	predicted gene 45088
7	gene	81.93407	82.01593	positive	MGI_C57BL6J_5825650	Gm46013	NCBI_Gene:108167484	MGI:5825650	protein coding gene	predicted gene, 46013
7	gene	81.96571	81.96583	positive	MGI_C57BL6J_5455684	Gm25907	ENSEMBL:ENSMUSG00000089111	MGI:5455684	snoRNA gene	predicted gene, 25907
7	gene	81.96666	81.99230	negative	MGI_C57BL6J_1097164	Bnc1	NCBI_Gene:12173,ENSEMBL:ENSMUSG00000025105	MGI:1097164	protein coding gene	basonuclin 1
7	pseudogene	81.99200	81.99262	positive	MGI_C57BL6J_1921157	4833418N17Rik	ENSEMBL:ENSMUSG00000052779	MGI:1921157	pseudogene	RIKEN cDNA 4833418N17 gene
7	gene	82.07039	82.08176	positive	MGI_C57BL6J_5434100	Gm20744	NCBI_Gene:434205,ENSEMBL:ENSMUSG00000109145	MGI:5434100	lncRNA gene	predicted gene, 20744
7	gene	82.11577	82.12043	negative	MGI_C57BL6J_5753632	Gm45056	ENSEMBL:ENSMUSG00000108987	MGI:5753632	lncRNA gene	predicted gene 45056
7	gene	82.11983	82.16172	positive	MGI_C57BL6J_5592009	Gm32850	NCBI_Gene:102635543,ENSEMBL:ENSMUSG00000108868	MGI:5592009	lncRNA gene	predicted gene, 32850
7	gene	82.15588	82.15702	negative	MGI_C57BL6J_5753666	Gm45090	ENSEMBL:ENSMUSG00000108845	MGI:5753666	lncRNA gene	predicted gene 45090
7	gene	82.17266	82.17470	negative	MGI_C57BL6J_5753665	Gm45089	ENSEMBL:ENSMUSG00000109140	MGI:5753665	unclassified gene	predicted gene 45089
7	gene	82.17384	82.30742	positive	MGI_C57BL6J_700011	Sh3gl3	NCBI_Gene:20408,ENSEMBL:ENSMUSG00000030638	MGI:700011	protein coding gene	SH3-domain GRB2-like 3
7	gene	82.23620	82.25466	negative	MGI_C57BL6J_5592062	Gm32903	NCBI_Gene:102635613	MGI:5592062	lncRNA gene	predicted gene, 32903
7	gene	82.33539	82.61445	positive	MGI_C57BL6J_3028499	Adamtsl3	NCBI_Gene:269959,ENSEMBL:ENSMUSG00000070469	MGI:3028499	protein coding gene	ADAMTS-like 3
7	gene	82.34227	82.34334	positive	MGI_C57BL6J_5753495	Gm44919	ENSEMBL:ENSMUSG00000109479	MGI:5753495	unclassified gene	predicted gene 44919
7	gene	82.63296	82.64857	negative	MGI_C57BL6J_1914618	Saxo2	NCBI_Gene:330577,ENSEMBL:ENSMUSG00000038570	MGI:1914618	protein coding gene	stabilizer of axonemal microtubules 2
7	gene	82.64861	82.77785	positive	MGI_C57BL6J_2141969	Efl1	NCBI_Gene:101592,ENSEMBL:ENSMUSG00000038563	MGI:2141969	protein coding gene	elongation factor like GTPase 1
7	pseudogene	82.67755	82.67807	positive	MGI_C57BL6J_5753493	Gm44917	ENSEMBL:ENSMUSG00000108855	MGI:5753493	pseudogene	predicted gene 44917
7	gene	82.69540	82.69827	positive	MGI_C57BL6J_5804922	Gm45807	ENSEMBL:ENSMUSG00000108991	MGI:5804922	unclassified gene	predicted gene 45807
7	gene	82.70846	82.70882	negative	MGI_C57BL6J_1918844	9130009I01Rik	NA	NA	unclassified gene	RIKEN cDNA 9130009I01 gene
7	gene	82.71559	82.71779	positive	MGI_C57BL6J_5753492	Gm44916	ENSEMBL:ENSMUSG00000108984	MGI:5753492	unclassified gene	predicted gene 44916
7	gene	82.74335	82.75564	negative	MGI_C57BL6J_1921308	4933406J10Rik	NCBI_Gene:77800,ENSEMBL:ENSMUSG00000086690	MGI:1921308	lncRNA gene	RIKEN cDNA 4933406J10 gene
7	gene	82.75487	82.75498	negative	MGI_C57BL6J_4422017	n-R5s154	ENSEMBL:ENSMUSG00000084462	MGI:4422017	rRNA gene	nuclear encoded rRNA 5S 154
7	gene	82.81090	82.82344	positive	MGI_C57BL6J_5588955	Gm29796	NCBI_Gene:101056204	MGI:5588955	lncRNA gene	predicted gene, 29796
7	gene	82.83139	82.86707	negative	MGI_C57BL6J_5595743	Gm36584	NCBI_Gene:102640547,ENSEMBL:ENSMUSG00000109383	MGI:5595743	lncRNA gene	predicted gene, 36584
7	gene	82.85013	82.86158	positive	MGI_C57BL6J_1916583	1700010L04Rik	NCBI_Gene:619808,ENSEMBL:ENSMUSG00000030636	MGI:1916583	lncRNA gene	RIKEN cDNA 1700010L04 gene
7	gene	82.86733	82.87158	positive	MGI_C57BL6J_1918252	Mex3b	NCBI_Gene:108797,ENSEMBL:ENSMUSG00000057706	MGI:1918252	protein coding gene	mex3 RNA binding family member B
7	gene	82.93794	82.97139	negative	MGI_C57BL6J_1918535	4933430H16Rik	NCBI_Gene:71285,ENSEMBL:ENSMUSG00000109106	MGI:1918535	lncRNA gene	RIKEN cDNA 4933430H16 gene
7	gene	82.94539	82.95132	positive	MGI_C57BL6J_5825629	Gm45992	NCBI_Gene:108167444	MGI:5825629	lncRNA gene	predicted gene, 45992
7	pseudogene	82.96639	82.96731	negative	MGI_C57BL6J_3643615	Gm6112	NCBI_Gene:619909,ENSEMBL:ENSMUSG00000109541	MGI:3643615	pseudogene	predicted gene 6112
7	gene	82.99483	82.99497	positive	MGI_C57BL6J_5452711	Gm22934	ENSEMBL:ENSMUSG00000077149	MGI:5452711	snoRNA gene	predicted gene, 22934
7	gene	83.03738	83.04817	positive	MGI_C57BL6J_5595976	Gm36817	NCBI_Gene:102640848	MGI:5595976	lncRNA gene	predicted gene, 36817
7	gene	83.06178	83.17943	positive	MGI_C57BL6J_3687211	A530021J07Rik	NCBI_Gene:330578,ENSEMBL:ENSMUSG00000053528	MGI:3687211	lncRNA gene	Riken cDNA A530021J07 gene
7	gene	83.17857	83.20159	negative	MGI_C57BL6J_1925322	5930435M05Rik	ENSEMBL:ENSMUSG00000108861	MGI:1925322	lncRNA gene	RIKEN cDNA 5930435M05 gene
7	pseudogene	83.23454	83.23488	positive	MGI_C57BL6J_5753421	Gm44845	ENSEMBL:ENSMUSG00000109335	MGI:5753421	pseudogene	predicted gene 44845
7	gene	83.32774	83.36943	negative	MGI_C57BL6J_5753300	Gm44724	ENSEMBL:ENSMUSG00000109506	MGI:5753300	lncRNA gene	predicted gene 44724
7	gene	83.34127	83.38319	negative	MGI_C57BL6J_5589135	Gm29976	NCBI_Gene:102631706	MGI:5589135	lncRNA gene	predicted gene, 29976
7	gene	83.37914	83.38314	negative	MGI_C57BL6J_5753299	Gm44723	ENSEMBL:ENSMUSG00000109013	MGI:5753299	unclassified gene	predicted gene 44723
7	pseudogene	83.41198	83.41459	positive	MGI_C57BL6J_3643208	Gm7957	NCBI_Gene:100534347,ENSEMBL:ENSMUSG00000108831	MGI:3643208	pseudogene	predicted gene 7957
7	gene	83.47171	83.48547	positive	MGI_C57BL6J_5753567	Gm44991	ENSEMBL:ENSMUSG00000109042	MGI:5753567	lncRNA gene	predicted gene 44991
7	gene	83.53619	83.55070	negative	MGI_C57BL6J_3642045	Gm10610	NCBI_Gene:100038384,ENSEMBL:ENSMUSG00000094841	MGI:3642045	lncRNA gene	predicted gene 10610
7	gene	83.58429	83.62685	positive	MGI_C57BL6J_2669033	Tmc3	NCBI_Gene:233424,ENSEMBL:ENSMUSG00000038540	MGI:2669033	protein coding gene	transmembrane channel-like gene family 3
7	gene	83.59660	83.63193	negative	MGI_C57BL6J_4439562	Gm16638	NCBI_Gene:102631889,ENSEMBL:ENSMUSG00000087088	MGI:4439562	lncRNA gene	predicted gene, 16638
7	gene	83.63196	83.65313	positive	MGI_C57BL6J_2156765	Stard5	NCBI_Gene:170460,ENSEMBL:ENSMUSG00000046027	MGI:2156765	protein coding gene	StAR-related lipid transfer (START) domain containing 5
7	gene	83.63337	83.63582	positive	MGI_C57BL6J_5804953	Gm45838	ENSEMBL:ENSMUSG00000108825	MGI:5804953	unclassified gene	predicted gene 45838
7	gene	83.64283	83.74627	negative	MGI_C57BL6J_1270855	Il16	NCBI_Gene:16170,ENSEMBL:ENSMUSG00000001741	MGI:1270855	protein coding gene	interleukin 16
7	gene	83.65958	83.66096	positive	MGI_C57BL6J_1917415	2310044K18Rik	ENSEMBL:ENSMUSG00000085080	MGI:1917415	lncRNA gene	RIKEN cDNA 2310044K18 gene
7	pseudogene	83.71089	83.71191	negative	MGI_C57BL6J_1933203	Phgdh-ps1	NCBI_Gene:83494,ENSEMBL:ENSMUSG00000109290	MGI:1933203	pseudogene	3-phosphoglycerate dehydrogenase, pseudogene 1
7	pseudogene	83.75588	83.75779	positive	MGI_C57BL6J_3646150	Gm7964	NCBI_Gene:666170,ENSEMBL:ENSMUSG00000063902	MGI:3646150	pseudogene	predicted gene 7964
7	gene	83.77410	83.79802	negative	MGI_C57BL6J_1922806	Cfap161	NCBI_Gene:75556,ENSEMBL:ENSMUSG00000011154	MGI:1922806	protein coding gene	cilia and flagella associated protein 161
7	gene	83.80042	83.83460	negative	MGI_C57BL6J_5753569	Gm44993	ENSEMBL:ENSMUSG00000109248	MGI:5753569	lncRNA gene	predicted gene 44993
7	gene	83.81408	83.83835	positive	MGI_C57BL6J_5621928	Gm39043	NCBI_Gene:105242985,ENSEMBL:ENSMUSG00000109450	MGI:5621928	lncRNA gene	predicted gene, 39043
7	pseudogene	83.86418	83.86553	negative	MGI_C57BL6J_1920329	3110009M11Rik	NCBI_Gene:73079,ENSEMBL:ENSMUSG00000109163	MGI:1920329	pseudogene	RIKEN cDNA 3110009M11 gene
7	gene	83.86678	83.86878	positive	MGI_C57BL6J_5753107	Gm44531	ENSEMBL:ENSMUSG00000109552	MGI:5753107	unclassified gene	predicted gene 44531
7	gene	83.87436	83.87792	positive	MGI_C57BL6J_5753106	Gm44530	ENSEMBL:ENSMUSG00000109452	MGI:5753106	unclassified gene	predicted gene 44530
7	gene	83.87987	83.88434	negative	MGI_C57BL6J_1891420	Tlnrd1	NCBI_Gene:80889,ENSEMBL:ENSMUSG00000070462	MGI:1891420	protein coding gene	talin rod domain containing 1
7	gene	83.88395	83.88519	positive	MGI_C57BL6J_1916829	2310034P14Rik	NCBI_Gene:69579	MGI:1916829	protein coding gene	RIKEN cDNA 2310034P14 gene
7	gene	83.88447	83.90153	positive	MGI_C57BL6J_1891421	Mesd	NCBI_Gene:67943,ENSEMBL:ENSMUSG00000038503	MGI:1891421	protein coding gene	mesoderm development LRP chaperone
7	gene	83.89226	83.89640	positive	MGI_C57BL6J_6155171	Gm49493	ENSEMBL:ENSMUSG00000108878	MGI:6155171	unclassified gene	predicted gene, 49493
7	gene	83.93286	84.08669	negative	MGI_C57BL6J_2443629	Cemip	NCBI_Gene:80982,ENSEMBL:ENSMUSG00000052353	MGI:2443629	protein coding gene	cell migration inducing protein, hyaluronan binding
7	gene	83.97018	84.02474	positive	MGI_C57BL6J_5589599	Gm30440	NCBI_Gene:102632341	MGI:5589599	lncRNA gene	predicted gene, 30440
7	gene	84.10936	84.15189	negative	MGI_C57BL6J_1917428	Abhd17c	NCBI_Gene:70178,ENSEMBL:ENSMUSG00000038459	MGI:1917428	protein coding gene	abhydrolase domain containing 17C
7	gene	84.15199	84.26650	positive	MGI_C57BL6J_5477202	Gm26708	NCBI_Gene:102633347,ENSEMBL:ENSMUSG00000097016	MGI:5477202	lncRNA gene	predicted gene, 26708
7	gene	84.15395	84.16491	negative	MGI_C57BL6J_5621929	Gm39044	NCBI_Gene:105242986	MGI:5621929	lncRNA gene	predicted gene, 39044
7	gene	84.17056	84.17072	positive	MGI_C57BL6J_5451954	Gm22177	ENSEMBL:ENSMUSG00000092743	MGI:5451954	snRNA gene	predicted gene, 22177
7	gene	84.20818	84.21051	negative	MGI_C57BL6J_5753402	Gm44826	ENSEMBL:ENSMUSG00000109381	MGI:5753402	unclassified gene	predicted gene 44826
7	gene	84.22683	84.23292	negative	MGI_C57BL6J_5753403	Gm44827	ENSEMBL:ENSMUSG00000109091	MGI:5753403	lncRNA gene	predicted gene 44827
7	gene	84.24627	84.41019	negative	MGI_C57BL6J_107188	Arnt2	NCBI_Gene:11864,ENSEMBL:ENSMUSG00000015709	MGI:107188	protein coding gene	aryl hydrocarbon receptor nuclear translocator 2
7	gene	84.32331	84.32341	negative	MGI_C57BL6J_5455567	Gm25790	ENSEMBL:ENSMUSG00000065227	MGI:5455567	snRNA gene	predicted gene, 25790
7	gene	84.33450	84.34787	positive	MGI_C57BL6J_5590032	Gm30873	NCBI_Gene:102632922,ENSEMBL:ENSMUSG00000109341	MGI:5590032	lncRNA gene	predicted gene, 30873
7	gene	84.41135	84.41737	negative	MGI_C57BL6J_5621930	Gm39045	NCBI_Gene:105242987	MGI:5621930	lncRNA gene	predicted gene, 39045
7	gene	84.43028	84.45707	positive	MGI_C57BL6J_5590443	Gm31284	NCBI_Gene:102633466	MGI:5590443	lncRNA gene	predicted gene, 31284
7	gene	84.43599	84.43923	negative	MGI_C57BL6J_5753509	Gm44933	ENSEMBL:ENSMUSG00000108864	MGI:5753509	lncRNA gene	predicted gene 44933
7	gene	84.44283	84.44455	negative	MGI_C57BL6J_5753751	Gm45175	ENSEMBL:ENSMUSG00000109347	MGI:5753751	lncRNA gene	predicted gene 45175
7	pseudogene	84.48188	84.48269	negative	MGI_C57BL6J_5010056	Gm17871	NCBI_Gene:100416013	MGI:5010056	pseudogene	predicted gene, 17871
7	gene	84.52895	84.58353	positive	MGI_C57BL6J_3780284	Gm2115	NCBI_Gene:100039239,ENSEMBL:ENSMUSG00000097789	MGI:3780284	protein coding gene	predicted gene 2115
7	gene	84.55419	84.55725	positive	MGI_C57BL6J_5753750	Gm45174	ENSEMBL:ENSMUSG00000109422	MGI:5753750	unclassified gene	predicted gene 45174
7	gene	84.57572	84.57584	negative	MGI_C57BL6J_5753504	Gm44928	ENSEMBL:ENSMUSG00000109513	MGI:5753504	unclassified gene	predicted gene 44928
7	gene	84.58516	84.60672	negative	MGI_C57BL6J_95482	Fah	NCBI_Gene:14085,ENSEMBL:ENSMUSG00000030630	MGI:95482	protein coding gene	fumarylacetoacetate hydrolase
7	gene	84.61377	84.68996	negative	MGI_C57BL6J_1929510	Zfand6	NCBI_Gene:65098,ENSEMBL:ENSMUSG00000030629	MGI:1929510	protein coding gene	zinc finger, AN1-type domain 6
7	gene	84.68964	84.77905	positive	MGI_C57BL6J_1919745	2610206C17Rik	NCBI_Gene:72495,ENSEMBL:ENSMUSG00000085236	MGI:1919745	lncRNA gene	RIKEN cDNA 2610206C17 gene
7	pseudogene	84.80103	84.80404	positive	MGI_C57BL6J_5011143	Gm18958	NCBI_Gene:100418081,ENSEMBL:ENSMUSG00000092429	MGI:5011143	pseudogene	predicted gene, 18958
7	pseudogene	84.81039	84.81143	negative	MGI_C57BL6J_3757998	Vmn2r-ps62	NCBI_Gene:100124558,ENSEMBL:ENSMUSG00000092217	MGI:3757998	pseudogene	vomeronasal 2, receptor, pseudogene 62
7	pseudogene	84.83436	84.84169	negative	MGI_C57BL6J_3643981	Gm6155	NCBI_Gene:620480,ENSEMBL:ENSMUSG00000068629	MGI:3643981	pseudogene	predicted pseudogene 6155
7	gene	84.85355	84.85961	positive	MGI_C57BL6J_3030125	Olfr291	NCBI_Gene:258410,ENSEMBL:ENSMUSG00000070460	MGI:3030125	protein coding gene	olfactory receptor 291
7	pseudogene	84.87820	84.87837	positive	MGI_C57BL6J_3757999	Vmn2r-ps63	NCBI_Gene:100124559	MGI:3757999	pseudogene	vomeronasal 2, receptor, pseudogene 63
7	pseudogene	84.87912	84.88466	positive	MGI_C57BL6J_3645629	Gm8018	NCBI_Gene:100418036,ENSEMBL:ENSMUSG00000092425	MGI:3645629	pseudogene	predicted gene 8018
7	gene	84.91308	84.92086	positive	MGI_C57BL6J_3030124	Olfr290	NCBI_Gene:258411,ENSEMBL:ENSMUSG00000116179,ENSEMBL:ENSMUSG00000070459	MGI:3030124	protein coding gene	olfactory receptor 290
7	pseudogene	84.91938	84.92050	negative	MGI_C57BL6J_5010745	Gm18560	NCBI_Gene:100417361,ENSEMBL:ENSMUSG00000092214	MGI:5010745	pseudogene	predicted gene, 18560
7	gene	84.93556	84.96412	negative	MGI_C57BL6J_3642776	Vmn2r65	NCBI_Gene:100009609,ENSEMBL:ENSMUSG00000066372	MGI:3642776	protein coding gene	vomeronasal 2, receptor 65
7	pseudogene	84.94845	84.94927	negative	MGI_C57BL6J_5010170	Gm17985	NCBI_Gene:100416229	MGI:5010170	pseudogene	predicted gene, 17985
7	gene	84.98537	85.01227	negative	MGI_C57BL6J_3588220	Vmn2r66	NCBI_Gene:233437,ENSEMBL:ENSMUSG00000094950	MGI:3588220	protein coding gene	vomeronasal 2, receptor 66
7	pseudogene	85.03403	85.03455	positive	MGI_C57BL6J_3758005	Vmn2r-ps64	NCBI_Gene:100124560,ENSEMBL:ENSMUSG00000092530	MGI:3758005	pseudogene	vomeronasal 2, receptor, pseudogene 64
7	pseudogene	85.04177	85.04200	negative	MGI_C57BL6J_3758007	Vmn2r-ps65	NCBI_Gene:100124561,ENSEMBL:ENSMUSG00000092422	MGI:3758007	pseudogene	vomeronasal 2, receptor, pseudogene 65
7	pseudogene	85.05308	85.07094	positive	MGI_C57BL6J_3758012	Vmn2r-ps66	NCBI_Gene:620641,ENSEMBL:ENSMUSG00000092621	MGI:3758012	pseudogene	vomeronasal 2, receptor, pseudogene 66
7	pseudogene	85.08395	85.08437	negative	MGI_C57BL6J_3761308	Vmn2r-ps67	NCBI_Gene:100124562,ENSEMBL:ENSMUSG00000092211	MGI:3761308	pseudogene	vomeronasal 2, receptor, pseudogene 67
7	pseudogene	85.08877	85.09124	positive	MGI_C57BL6J_5010543	Gm18358	NCBI_Gene:100417008,ENSEMBL:ENSMUSG00000092199	MGI:5010543	pseudogene	predicted gene, 18358
7	gene	85.12697	85.15600	negative	MGI_C57BL6J_3643129	Vmn2r67	NCBI_Gene:620672,ENSEMBL:ENSMUSG00000095664	MGI:3643129	protein coding gene	vomeronasal 2, receptor 67
7	pseudogene	85.19220	85.19317	positive	MGI_C57BL6J_3761309	Vmn2r-ps68	NCBI_Gene:620683,ENSEMBL:ENSMUSG00000092259	MGI:3761309	pseudogene	vomeronasal 2, receptor, pseudogene 68
7	gene	85.22114	85.23778	negative	MGI_C57BL6J_3648297	Vmn2r68	NCBI_Gene:620697,ENSEMBL:ENSMUSG00000096861	MGI:3648297	protein coding gene	vomeronasal 2, receptor 68
7	pseudogene	85.26069	85.26133	negative	MGI_C57BL6J_5141879	Gm20414	ENSEMBL:ENSMUSG00000092562	MGI:5141879	pseudogene	predicted gene 20414
7	pseudogene	85.28816	85.28961	negative	MGI_C57BL6J_5141880	Gm20415	ENSEMBL:ENSMUSG00000092313	MGI:5141880	pseudogene	predicted gene 20415
7	pseudogene	85.30395	85.34289	positive	MGI_C57BL6J_3761310	Vmn2r-ps69	NCBI_Gene:670926,ENSEMBL:ENSMUSG00000090773	MGI:3761310	pseudogene	vomeronasal 2, receptor, pseudogene 69
7	gene	85.39383	85.41592	negative	MGI_C57BL6J_3761311	Vmn2r69	NCBI_Gene:330581,ENSEMBL:ENSMUSG00000091006	MGI:3761311	protein coding gene	vomeronasal 2, receptor 69
7	pseudogene	85.47696	85.48202	positive	MGI_C57BL6J_5010544	Gm18359	NCBI_Gene:100417009,ENSEMBL:ENSMUSG00000092256	MGI:5010544	pseudogene	predicted gene, 18359
7	pseudogene	85.48179	85.54732	positive	MGI_C57BL6J_5010545	Gm18360	NCBI_Gene:100417010,ENSEMBL:ENSMUSG00000092467	MGI:5010545	pseudogene	predicted gene, 18360
7	pseudogene	85.50130	85.50513	positive	MGI_C57BL6J_5753154	Gm44578	ENSEMBL:ENSMUSG00000108857	MGI:5753154	pseudogene	predicted gene 44578
7	pseudogene	85.51185	85.51215	negative	MGI_C57BL6J_3761313	Vmn2r-ps70	NCBI_Gene:100124563,ENSEMBL:ENSMUSG00000092431	MGI:3761313	pseudogene	vomeronasal 2, receptor, pseudogene 70
7	gene	85.54841	85.56919	negative	MGI_C57BL6J_3761314	Vmn2r70	NCBI_Gene:670940,ENSEMBL:ENSMUSG00000090806	MGI:3761314	protein coding gene	vomeronasal 2, receptor 70
7	gene	85.56309	85.62468	positive	MGI_C57BL6J_3646472	Vmn2r71	NCBI_Gene:233445,ENSEMBL:ENSMUSG00000091205	MGI:3646472	protein coding gene	vomeronasal 2, receptor 71
7	pseudogene	85.57467	85.58234	positive	MGI_C57BL6J_3761316	Vmn2r-ps71	NCBI_Gene:100124564	MGI:3761316	pseudogene	vomeronasal 2, receptor, pseudogene 71
7	pseudogene	85.58965	85.59056	negative	MGI_C57BL6J_3761317	Vmn2r-ps72	NCBI_Gene:666358,ENSEMBL:ENSMUSG00000092533	MGI:3761317	pseudogene	vomeronasal 2, receptor, pseudogene 72
7	pseudogene	85.69636	85.71321	positive	MGI_C57BL6J_3761318	Vmn2r-ps73	NCBI_Gene:100125321,ENSEMBL:ENSMUSG00000092567	MGI:3761318	pseudogene	vomeronasal 2, receptor, pseudogene 73
7	pseudogene	85.71226	85.71314	positive	MGI_C57BL6J_3761319	Vmn2r-ps74	NCBI_Gene:666361	MGI:3761319	pseudogene	vomeronasal 2, receptor, pseudogene 74
7	gene	85.73594	85.75510	negative	MGI_C57BL6J_3647591	Vmn2r72	NCBI_Gene:244114,ENSEMBL:ENSMUSG00000051877	MGI:3647591	protein coding gene	vomeronasal 2, receptor 72
7	pseudogene	85.78502	85.78567	negative	MGI_C57BL6J_5010964	Gm18779	NCBI_Gene:100417717,ENSEMBL:ENSMUSG00000092426	MGI:5010964	pseudogene	predicted gene, 18779
7	pseudogene	85.78817	85.78965	negative	MGI_C57BL6J_5010539	Gm18354	NCBI_Gene:100416998,ENSEMBL:ENSMUSG00000092410	MGI:5010539	pseudogene	predicted gene, 18354
7	pseudogene	85.79831	85.79896	positive	MGI_C57BL6J_3761320	Vmn2r-ps75	NCBI_Gene:100124565,ENSEMBL:ENSMUSG00000092179	MGI:3761320	pseudogene	vomeronasal 2, receptor, pseudogene 75
7	pseudogene	85.81545	85.81619	negative	MGI_C57BL6J_3761321	Vmn2r-ps76	NCBI_Gene:100124566,ENSEMBL:ENSMUSG00000092307	MGI:3761321	pseudogene	vomeronasal 2, receptor, pseudogene 76
7	pseudogene	85.82191	85.82226	positive	MGI_C57BL6J_3761322	Vmn2r-ps77	NCBI_Gene:100124567,ENSEMBL:ENSMUSG00000092287	MGI:3761322	pseudogene	vomeronasal 2, receptor, pseudogene 77
7	gene	85.85067	85.87627	negative	MGI_C57BL6J_3646433	Vmn2r73	NCBI_Gene:620928,ENSEMBL:ENSMUSG00000070458	MGI:3646433	protein coding gene	vomeronasal 2, receptor 73
7	pseudogene	85.88444	85.88479	positive	MGI_C57BL6J_3761323	Vmn2r-ps78	NCBI_Gene:100124568,ENSEMBL:ENSMUSG00000092440	MGI:3761323	pseudogene	vomeronasal 2, receptor, pseudogene 78
7	gene	85.94461	85.96163	negative	MGI_C57BL6J_3643877	Vmn2r74	NCBI_Gene:546980,ENSEMBL:ENSMUSG00000090774	MGI:3643877	protein coding gene	vomeronasal 2, receptor 74
7	pseudogene	85.96702	85.96739	positive	MGI_C57BL6J_3761324	Vmn2r-ps79	NCBI_Gene:100124569,ENSEMBL:ENSMUSG00000092263	MGI:3761324	pseudogene	vomeronasal 2, receptor, pseudogene 79
7	pseudogene	85.98687	85.99962	negative	MGI_C57BL6J_3761325	Vmn2r-ps80	NCBI_Gene:666382,ENSEMBL:ENSMUSG00000092529	MGI:3761325	pseudogene	vomeronasal 2, receptor, pseudogene 80
7	pseudogene	86.02669	86.02761	positive	MGI_C57BL6J_3761326	Vmn2r-ps81	NCBI_Gene:637652,ENSEMBL:ENSMUSG00000092608	MGI:3761326	pseudogene	vomeronasal 2, receptor, pseudogene 81
7	pseudogene	86.05324	86.06346	negative	MGI_C57BL6J_3761327	Vmn2r-ps82	NCBI_Gene:637667,ENSEMBL:ENSMUSG00000092330	MGI:3761327	pseudogene	vomeronasal 2, receptor, pseudogene 82
7	pseudogene	86.07315	86.08378	negative	MGI_C57BL6J_3761328	Vmn2r-ps83	NCBI_Gene:666418,ENSEMBL:ENSMUSG00000092357	MGI:3761328	pseudogene	vomeronasal 2, receptor, pseudogene 83
7	pseudogene	86.12633	86.12729	positive	MGI_C57BL6J_3761329	Vmn2r-ps84	NCBI_Gene:100039471,ENSEMBL:ENSMUSG00000092532	MGI:3761329	pseudogene	vomeronasal 2, receptor, pseudogene 84
7	gene	86.14529	86.17178	negative	MGI_C57BL6J_3648311	Vmn2r75	NCBI_Gene:546981,ENSEMBL:ENSMUSG00000090436	MGI:3648311	protein coding gene	vomeronasal 2, receptor 75
7	pseudogene	86.18120	86.18214	positive	MGI_C57BL6J_3761330	Vmn2r-ps85	NCBI_Gene:100124570,ENSEMBL:ENSMUSG00000092587	MGI:3761330	pseudogene	vomeronasal 2, receptor, pseudogene 85
7	pseudogene	86.18568	86.18660	negative	MGI_C57BL6J_3761331	Vmn2r-ps86	NCBI_Gene:621096,ENSEMBL:ENSMUSG00000092419	MGI:3761331	pseudogene	vomeronasal 2, receptor, pseudogene 86
7	gene	86.20202	86.24631	negative	MGI_C57BL6J_3761332	Vmn2r76	NCBI_Gene:675969,ENSEMBL:ENSMUSG00000091239	MGI:3761332	protein coding gene	vomeronasal 2, receptor 76
7	gene	86.26849	86.27717	negative	MGI_C57BL6J_3030144	Olfr310	NCBI_Gene:258222,ENSEMBL:ENSMUSG00000057540	MGI:3030144	protein coding gene	olfactory receptor 310
7	pseudogene	86.29864	86.29889	negative	MGI_C57BL6J_5141945	Gm20480	ENSEMBL:ENSMUSG00000092197	MGI:5141945	pseudogene	predicted gene 20480
7	gene	86.29866	86.29876	negative	MGI_C57BL6J_5452969	Gm23192	ENSEMBL:ENSMUSG00000076389	MGI:5452969	miRNA gene	predicted gene, 23192
7	gene	86.30447	86.31371	negative	MGI_C57BL6J_3030143	Olfr309	NCBI_Gene:258196,ENSEMBL:ENSMUSG00000054054	MGI:3030143	protein coding gene	olfactory receptor 309
7	gene	86.31822	86.32563	negative	MGI_C57BL6J_3030142	Olfr308	NCBI_Gene:258614,ENSEMBL:ENSMUSG00000054498	MGI:3030142	protein coding gene	olfactory receptor 308
7	gene	86.33218	86.33759	negative	MGI_C57BL6J_3030141	Olfr307	NCBI_Gene:258610,ENSEMBL:ENSMUSG00000055610	MGI:3030141	protein coding gene	olfactory receptor 307
7	pseudogene	86.35298	86.35372	negative	MGI_C57BL6J_3030140	Olfr306-ps1	NCBI_Gene:404377,ENSEMBL:ENSMUSG00000092388	MGI:3030140	pseudogene	olfactory receptor 306, pseudogene 1
7	gene	86.36085	86.36693	negative	MGI_C57BL6J_3030139	Olfr305	NCBI_Gene:258609,ENSEMBL:ENSMUSG00000055571	MGI:3030139	protein coding gene	olfactory receptor 305
7	gene	86.38566	86.38666	negative	MGI_C57BL6J_3030138	Olfr304	NCBI_Gene:258089,ENSEMBL:ENSMUSG00000062426	MGI:3030138	protein coding gene	olfactory receptor 304
7	gene	86.39181	86.39779	negative	MGI_C57BL6J_3030137	Olfr303	NCBI_Gene:258612,ENSEMBL:ENSMUSG00000039608	MGI:3030137	protein coding gene	olfactory receptor 303
7	pseudogene	86.40277	86.40282	negative	MGI_C57BL6J_5791377	Gm45541	ENSEMBL:ENSMUSG00000110039	MGI:5791377	pseudogene	predicted gene 45541
7	gene	86.40385	86.41402	positive	MGI_C57BL6J_3030135	Olfr301	NCBI_Gene:257958,ENSEMBL:ENSMUSG00000061549	MGI:3030135	protein coding gene	olfactory receptor 301
7	gene	86.41236	86.41255	positive	MGI_C57BL6J_3030136	Olfr302	NA	NA	protein coding gene	olfactory receptor 302
7	pseudogene	86.43591	86.44526	positive	MGI_C57BL6J_3030134	Olfr300-ps1	NCBI_Gene:258088,ENSEMBL:ENSMUSG00000092401	MGI:3030134	polymorphic pseudogene	olfactory receptor 300, pseudogene 1
7	gene	86.45992	86.46956	positive	MGI_C57BL6J_3030133	Olfr299	NCBI_Gene:257929,ENSEMBL:ENSMUSG00000020168	MGI:3030133	protein coding gene	olfactory receptor 299
7	gene	86.48632	86.49248	negative	MGI_C57BL6J_3030132	Olfr298	NCBI_Gene:257905,ENSEMBL:ENSMUSG00000062878	MGI:3030132	protein coding gene	olfactory receptor 298
7	gene	86.51997	86.52850	positive	MGI_C57BL6J_3030131	Olfr297	NCBI_Gene:258611,ENSEMBL:ENSMUSG00000057067	MGI:3030131	protein coding gene	olfactory receptor 297
7	pseudogene	86.54197	86.54816	negative	MGI_C57BL6J_5010104	Gm17919	NCBI_Gene:100416107,ENSEMBL:ENSMUSG00000092293	MGI:5010104	pseudogene	predicted gene, 17919
7	pseudogene	86.55948	86.56268	positive	MGI_C57BL6J_3030130	Olfr296-ps1	NCBI_Gene:404375,ENSEMBL:ENSMUSG00000092372	MGI:3030130	polymorphic pseudogene	olfactory receptor 296, pseudogene 1
7	gene	86.58386	86.59113	positive	MGI_C57BL6J_3030129	Olfr295	NCBI_Gene:258850,ENSEMBL:ENSMUSG00000059319	MGI:3030129	protein coding gene	olfactory receptor 295
7	gene	86.61564	86.61664	negative	MGI_C57BL6J_3030128	Olfr294	NCBI_Gene:257904,ENSEMBL:ENSMUSG00000062042	MGI:3030128	protein coding gene	olfactory receptor 294
7	gene	86.64906	86.66604	positive	MGI_C57BL6J_3030127	Olfr293	NCBI_Gene:257906,ENSEMBL:ENSMUSG00000063394	MGI:3030127	protein coding gene	olfactory receptor 293
7	gene	86.68833	86.69751	positive	MGI_C57BL6J_3030126	Olfr292	NCBI_Gene:258613,ENSEMBL:ENSMUSG00000060688	MGI:3030126	protein coding gene	olfactory receptor 292
7	gene	86.71898	86.77605	negative	MGI_C57BL6J_1858193	Folh1	NCBI_Gene:53320,ENSEMBL:ENSMUSG00000001773	MGI:1858193	protein coding gene	folate hydrolase 1
7	gene	86.79503	86.81514	positive	MGI_C57BL6J_3643879	Vmn2r77	NCBI_Gene:546983,ENSEMBL:ENSMUSG00000090949	MGI:3643879	protein coding gene	vomeronasal 2, receptor 77
7	pseudogene	86.85933	86.88579	positive	MGI_C57BL6J_3761334	Vmn2r-ps87	NCBI_Gene:637881,ENSEMBL:ENSMUSG00000092195	MGI:3761334	pseudogene	vomeronasal 2, receptor, pseudogene 87
7	gene	86.89030	86.89774	positive	MGI_C57BL6J_5621932	Gm39047	NCBI_Gene:105242991	MGI:5621932	lncRNA gene	predicted gene, 39047
7	pseudogene	86.90698	86.90793	negative	MGI_C57BL6J_5011388	Gm19203	NCBI_Gene:100418423,ENSEMBL:ENSMUSG00000092376	MGI:5011388	pseudogene	predicted gene, 19203
7	gene	86.91509	86.95531	positive	MGI_C57BL6J_3761335	Vmn2r78	NCBI_Gene:637896,ENSEMBL:ENSMUSG00000091962	MGI:3761335	protein coding gene	vomeronasal 2, receptor 78
7	gene	86.99612	87.04494	positive	MGI_C57BL6J_3646882	Vmn2r79	NCBI_Gene:621430,ENSEMBL:ENSMUSG00000090362	MGI:3646882	protein coding gene	vomeronasal 2, receptor 79
7	gene	87.11887	87.12098	positive	MGI_C57BL6J_5753501	Gm44925	ENSEMBL:ENSMUSG00000109334	MGI:5753501	unclassified gene	predicted gene 44925
7	pseudogene	87.24201	87.24291	negative	MGI_C57BL6J_3646402	Gm6230	NCBI_Gene:621477,ENSEMBL:ENSMUSG00000108816	MGI:3646402	pseudogene	predicted gene 6230
7	gene	87.24610	87.39871	positive	MGI_C57BL6J_1354184	Nox4	NCBI_Gene:50490,ENSEMBL:ENSMUSG00000030562	MGI:1354184	protein coding gene	NADPH oxidase 4
7	gene	87.42477	87.49351	negative	MGI_C57BL6J_98880	Tyr	NCBI_Gene:22173,ENSEMBL:ENSMUSG00000004651	MGI:98880	protein coding gene	tyrosinase
7	gene	87.58398	88.13506	positive	MGI_C57BL6J_1351342	Grm5	NCBI_Gene:108071,ENSEMBL:ENSMUSG00000049583	MGI:1351342	protein coding gene	glutamate receptor, metabotropic 5
7	gene	87.58651	87.58672	positive	MGI_C57BL6J_1924639	C030032F19Rik	NA	NA	unclassified gene	RIKEN cDNA C030032F19 gene
7	pseudogene	87.69782	87.69911	negative	MGI_C57BL6J_5010639	Gm18454	NCBI_Gene:100417212	MGI:5010639	pseudogene	predicted gene, 18454
7	gene	87.77257	87.77439	positive	MGI_C57BL6J_5753502	Gm44926	ENSEMBL:ENSMUSG00000108983	MGI:5753502	unclassified gene	predicted gene 44926
7	gene	87.89075	87.89146	positive	MGI_C57BL6J_5753503	Gm44927	ENSEMBL:ENSMUSG00000108893	MGI:5753503	unclassified gene	predicted gene 44927
7	gene	88.06306	88.06629	positive	MGI_C57BL6J_5753424	Gm44848	ENSEMBL:ENSMUSG00000109461	MGI:5753424	unclassified gene	predicted gene 44848
7	gene	88.08281	88.08480	positive	MGI_C57BL6J_5753423	Gm44847	ENSEMBL:ENSMUSG00000108890	MGI:5753423	unclassified gene	predicted gene 44847
7	gene	88.08719	88.08725	negative	MGI_C57BL6J_5454026	Gm24249	ENSEMBL:ENSMUSG00000087947	MGI:5454026	snRNA gene	predicted gene, 24249
7	gene	88.11916	88.12240	positive	MGI_C57BL6J_5753422	Gm44846	ENSEMBL:ENSMUSG00000108993	MGI:5753422	unclassified gene	predicted gene 44846
7	gene	88.27802	88.31586	positive	MGI_C57BL6J_109553	Ctsc	NCBI_Gene:13032,ENSEMBL:ENSMUSG00000030560	MGI:109553	protein coding gene	cathepsin C
7	gene	88.27879	88.28353	negative	MGI_C57BL6J_5477016	Gm26522	ENSEMBL:ENSMUSG00000097423	MGI:5477016	lncRNA gene	predicted gene, 26522
7	gene	88.31148	88.31586	positive	MGI_C57BL6J_5753327	Gm44751	ENSEMBL:ENSMUSG00000109244	MGI:5753327	lncRNA gene	predicted gene 44751
7	gene	88.34397	88.34410	positive	MGI_C57BL6J_5455122	Gm25345	ENSEMBL:ENSMUSG00000077693	MGI:5455122	snoRNA gene	predicted gene, 25345
7	gene	88.34815	88.34906	negative	MGI_C57BL6J_1924892	C330001P17Rik	NA	NA	unclassified gene	RIKEN cDNA C330001P17 gene
7	pseudogene	88.34931	88.35659	negative	MGI_C57BL6J_3780575	Gm2407	NCBI_Gene:100039756	MGI:3780575	pseudogene	predicted gene 2407
7	gene	88.43027	88.49157	positive	MGI_C57BL6J_1919683	Rab38	NCBI_Gene:72433,ENSEMBL:ENSMUSG00000030559	MGI:1919683	protein coding gene	RAB38, member RAS oncogene family
7	pseudogene	88.44867	88.44923	negative	MGI_C57BL6J_3783103	Gm15661	ENSEMBL:ENSMUSG00000080748	MGI:3783103	pseudogene	predicted gene 15661
7	pseudogene	88.53040	88.53092	negative	MGI_C57BL6J_3704295	Rps13-ps2	NCBI_Gene:100039924,ENSEMBL:ENSMUSG00000069972	MGI:3704295	pseudogene	ribosomal protein S13, pseudogene 2
7	pseudogene	88.57167	88.57286	negative	MGI_C57BL6J_3643325	Gm8183	NCBI_Gene:666598,ENSEMBL:ENSMUSG00000098174	MGI:3643325	pseudogene	predicted gene 8183
7	pseudogene	88.78192	88.78240	negative	MGI_C57BL6J_3648708	Gm6240	NCBI_Gene:621562,ENSEMBL:ENSMUSG00000109135	MGI:3648708	pseudogene	predicted gene 6240
7	gene	88.85304	88.86489	negative	MGI_C57BL6J_5753720	Gm45144	ENSEMBL:ENSMUSG00000109278	MGI:5753720	lncRNA gene	predicted gene 45144
7	gene	89.13971	89.40427	negative	MGI_C57BL6J_1920009	Tmem135	NCBI_Gene:72759,ENSEMBL:ENSMUSG00000039428	MGI:1920009	protein coding gene	transmembrane protein 135
7	gene	89.21511	89.21710	negative	MGI_C57BL6J_5753280	Gm44704	ENSEMBL:ENSMUSG00000109576	MGI:5753280	unclassified gene	predicted gene 44704
7	gene	89.29119	89.29130	negative	MGI_C57BL6J_5454436	Gm24659	ENSEMBL:ENSMUSG00000094780	MGI:5454436	miRNA gene	predicted gene, 24659
7	gene	89.29575	89.29586	negative	MGI_C57BL6J_5451948	Gm22171	ENSEMBL:ENSMUSG00000096631	MGI:5451948	miRNA gene	predicted gene, 22171
7	gene	89.33837	89.34629	positive	MGI_C57BL6J_5753571	Gm44995	ENSEMBL:ENSMUSG00000109327	MGI:5753571	lncRNA gene	predicted gene 44995
7	gene	89.38834	89.39132	negative	MGI_C57BL6J_5753572	Gm44996	ENSEMBL:ENSMUSG00000109199	MGI:5753572	unclassified gene	predicted gene 44996
7	gene	89.40435	89.41313	positive	MGI_C57BL6J_108520	Fzd4	NCBI_Gene:14366,ENSEMBL:ENSMUSG00000049791	MGI:108520	protein coding gene	frizzled class receptor 4
7	gene	89.42631	89.44193	positive	MGI_C57BL6J_2141898	AI314278	NCBI_Gene:101521,ENSEMBL:ENSMUSG00000109311	MGI:2141898	lncRNA gene	expressed sequence AI314278
7	gene	89.50778	89.52724	negative	MGI_C57BL6J_1923703	Prss23	NCBI_Gene:76453,ENSEMBL:ENSMUSG00000039405	MGI:1923703	protein coding gene	protease, serine 23
7	gene	89.51001	89.51187	positive	MGI_C57BL6J_1916654	Prss23os	NCBI_Gene:108167445,ENSEMBL:ENSMUSG00000030623	MGI:1916654	antisense lncRNA gene	protease, serine 23, opposite strand
7	gene	89.55237	89.56808	positive	MGI_C57BL6J_5753640	Gm45064	ENSEMBL:ENSMUSG00000108875	MGI:5753640	lncRNA gene	predicted gene 45064
7	pseudogene	89.60769	89.60889	positive	MGI_C57BL6J_3780714	Gm2546	NCBI_Gene:100040001,ENSEMBL:ENSMUSG00000098019	MGI:3780714	pseudogene	predicted gene 2546
7	gene	89.63210	89.63312	negative	MGI_C57BL6J_3642744	A230065N10Rik	ENSEMBL:ENSMUSG00000092071	MGI:3642744	lncRNA gene	RIKEN cDNA A230065N10 gene
7	gene	89.63220	89.85436	positive	MGI_C57BL6J_1916679	Me3	NCBI_Gene:109264,ENSEMBL:ENSMUSG00000030621	MGI:1916679	protein coding gene	malic enzyme 3, NADP(+)-dependent, mitochondrial
7	pseudogene	89.76141	89.76217	negative	MGI_C57BL6J_3783186	Gm15744	NCBI_Gene:100502804,ENSEMBL:ENSMUSG00000089938	MGI:3783186	pseudogene	predicted gene 15744
7	gene	89.82722	89.82856	positive	MGI_C57BL6J_5804908	Gm45793	ENSEMBL:ENSMUSG00000109150	MGI:5804908	unclassified gene	predicted gene 45793
7	gene	89.86615	89.90363	negative	MGI_C57BL6J_1918134	Ccdc81	NCBI_Gene:70884,ENSEMBL:ENSMUSG00000039391	MGI:1918134	protein coding gene	coiled-coil domain containing 81
7	gene	89.91753	89.94122	negative	MGI_C57BL6J_96738	Hikeshi	NCBI_Gene:67669,ENSEMBL:ENSMUSG00000062797	MGI:96738	protein coding gene	heat shock protein nuclear import factor
7	gene	89.95465	89.98142	negative	MGI_C57BL6J_95286	Eed	NCBI_Gene:13626,ENSEMBL:ENSMUSG00000030619	MGI:95286	protein coding gene	embryonic ectoderm development
7	gene	89.96499	89.96539	negative	MGI_C57BL6J_5753696	Gm45120	ENSEMBL:ENSMUSG00000109038	MGI:5753696	unclassified gene	predicted gene 45120
7	gene	89.98072	90.04907	positive	MGI_C57BL6J_2442580	E230029C05Rik	NCBI_Gene:319711,ENSEMBL:ENSMUSG00000097585	MGI:2442580	lncRNA gene	RIKEN cDNA E230029C05 gene
7	gene	90.03057	90.03292	positive	MGI_C57BL6J_5753436	Gm44860	ENSEMBL:ENSMUSG00000109245	MGI:5753436	unclassified gene	predicted gene 44860
7	gene	90.04270	90.04392	positive	MGI_C57BL6J_5753437	Gm44861	ENSEMBL:ENSMUSG00000108897	MGI:5753437	unclassified gene	predicted gene 44861
7	gene	90.04343	90.04752	negative	MGI_C57BL6J_5825630	Gm45993	NCBI_Gene:108167446	MGI:5825630	lncRNA gene	predicted gene, 45993
7	gene	90.05537	90.06351	negative	MGI_C57BL6J_5591323	Gm32164	NCBI_Gene:102634625	MGI:5591323	lncRNA gene	predicted gene, 32164
7	pseudogene	90.10722	90.10809	negative	MGI_C57BL6J_3644965	Gm5341	NCBI_Gene:384719,ENSEMBL:ENSMUSG00000062235	MGI:3644965	pseudogene	predicted pseudogene 5341
7	gene	90.12482	90.12998	negative	MGI_C57BL6J_1925579	2310010J17Rik	NCBI_Gene:78329,ENSEMBL:ENSMUSG00000097162	MGI:1925579	lncRNA gene	RIKEN cDNA 2310010J17 gene
7	gene	90.13021	90.21346	positive	MGI_C57BL6J_2385902	Picalm	NCBI_Gene:233489,ENSEMBL:ENSMUSG00000039361	MGI:2385902	protein coding gene	phosphatidylinositol binding clathrin assembly protein
7	gene	90.13249	90.13763	positive	MGI_C57BL6J_5753799	Gm45223	ENSEMBL:ENSMUSG00000109429	MGI:5753799	unclassified gene	predicted gene 45223
7	gene	90.14595	90.15025	positive	MGI_C57BL6J_5753798	Gm45222	ENSEMBL:ENSMUSG00000109498	MGI:5753798	unclassified gene	predicted gene 45222
7	gene	90.18593	90.18820	positive	MGI_C57BL6J_5753797	Gm45221	ENSEMBL:ENSMUSG00000109005	MGI:5753797	unclassified gene	predicted gene 45221
7	gene	90.20128	90.20379	positive	MGI_C57BL6J_5753796	Gm45220	ENSEMBL:ENSMUSG00000109279	MGI:5753796	unclassified gene	predicted gene 45220
7	gene	90.22350	90.26578	negative	MGI_C57BL6J_1918255	Ccdc83	NCBI_Gene:75338,ENSEMBL:ENSMUSG00000030617	MGI:1918255	protein coding gene	coiled-coil domain containing 83
7	gene	90.29373	90.29385	positive	MGI_C57BL6J_4422018	n-R5s155	ENSEMBL:ENSMUSG00000084480	MGI:4422018	rRNA gene	nuclear encoded rRNA 5S 155
7	gene	90.30221	90.41072	positive	MGI_C57BL6J_1933366	Sytl2	NCBI_Gene:83671,ENSEMBL:ENSMUSG00000030616	MGI:1933366	protein coding gene	synaptotagmin-like 2
7	gene	90.42631	90.42867	positive	MGI_C57BL6J_1917304	Ccdc89	NCBI_Gene:70054,ENSEMBL:ENSMUSG00000044362	MGI:1917304	protein coding gene	coiled-coil domain containing 89
7	gene	90.44273	90.44838	positive	MGI_C57BL6J_2675296	Crebzf	NCBI_Gene:233490,ENSEMBL:ENSMUSG00000051451	MGI:2675296	protein coding gene	CREB/ATF bZIP transcription factor
7	gene	90.45070	90.45723	negative	MGI_C57BL6J_1913521	Tmem126a	NCBI_Gene:66271,ENSEMBL:ENSMUSG00000030615	MGI:1913521	protein coding gene	transmembrane protein 126A
7	gene	90.45725	90.45888	positive	MGI_C57BL6J_5753483	Gm44907	ENSEMBL:ENSMUSG00000109216	MGI:5753483	unclassified gene	predicted gene 44907
7	gene	90.46744	90.47600	negative	MGI_C57BL6J_1915722	Tmem126b	NCBI_Gene:68472,ENSEMBL:ENSMUSG00000030614	MGI:1915722	protein coding gene	transmembrane protein 126B
7	gene	90.47618	92.44925	positive	MGI_C57BL6J_1344351	Dlg2	NCBI_Gene:23859,ENSEMBL:ENSMUSG00000052572	MGI:1344351	protein coding gene	discs large MAGUK scaffold protein 2
7	pseudogene	90.81154	90.81216	negative	MGI_C57BL6J_5753738	Gm45162	ENSEMBL:ENSMUSG00000109074	MGI:5753738	pseudogene	predicted gene 45162
7	gene	90.87160	90.87278	positive	MGI_C57BL6J_1924466	A930002H02Rik	ENSEMBL:ENSMUSG00000109242	MGI:1924466	unclassified gene	RIKEN cDNA A930002H02 gene
7	gene	90.88544	90.88771	negative	MGI_C57BL6J_5753737	Gm45161	ENSEMBL:ENSMUSG00000109431	MGI:5753737	unclassified gene	predicted gene 45161
7	gene	90.88707	90.94005	positive	MGI_C57BL6J_5753735	Gm45159	ENSEMBL:ENSMUSG00000109125	MGI:5753735	lncRNA gene	predicted gene 45159
7	gene	90.99531	90.99942	positive	MGI_C57BL6J_5753754	Gm45178	ENSEMBL:ENSMUSG00000109562	MGI:5753754	unclassified gene	predicted gene 45178
7	gene	91.01574	91.01630	positive	MGI_C57BL6J_5621933	Gm39048	NCBI_Gene:105242994	MGI:5621933	lncRNA gene	predicted gene, 39048
7	gene	91.04900	91.05334	positive	MGI_C57BL6J_5753755	Gm45179	ENSEMBL:ENSMUSG00000108956	MGI:5753755	unclassified gene	predicted gene 45179
7	gene	91.12300	91.12321	negative	MGI_C57BL6J_5530852	Gm27470	ENSEMBL:ENSMUSG00000098805	MGI:5530852	unclassified non-coding RNA gene	predicted gene, 27470
7	gene	91.12635	91.12655	negative	MGI_C57BL6J_5531042	Gm27660	ENSEMBL:ENSMUSG00000099001	MGI:5531042	unclassified non-coding RNA gene	predicted gene, 27660
7	gene	91.13184	91.13594	positive	MGI_C57BL6J_5753752	Gm45176	ENSEMBL:ENSMUSG00000109239	MGI:5753752	unclassified gene	predicted gene 45176
7	gene	91.13996	91.14227	positive	MGI_C57BL6J_5753753	Gm45177	ENSEMBL:ENSMUSG00000108819	MGI:5753753	unclassified gene	predicted gene 45177
7	gene	91.15860	91.16100	positive	MGI_C57BL6J_5753758	Gm45182	ENSEMBL:ENSMUSG00000109387	MGI:5753758	unclassified gene	predicted gene 45182
7	gene	91.24299	91.24310	positive	MGI_C57BL6J_5454329	Gm24552	ENSEMBL:ENSMUSG00000089271	MGI:5454329	snRNA gene	predicted gene, 24552
7	gene	91.30469	91.30619	positive	MGI_C57BL6J_5753759	Gm45183	ENSEMBL:ENSMUSG00000109353	MGI:5753759	unclassified gene	predicted gene 45183
7	gene	91.34002	91.34279	positive	MGI_C57BL6J_5753254	Gm44678	ENSEMBL:ENSMUSG00000108920	MGI:5753254	unclassified gene	predicted gene 44678
7	gene	91.39258	91.39269	negative	MGI_C57BL6J_5451857	Gm22080	ENSEMBL:ENSMUSG00000088216	MGI:5451857	snRNA gene	predicted gene, 22080
7	gene	91.51911	91.52202	positive	MGI_C57BL6J_5753255	Gm44679	ENSEMBL:ENSMUSG00000109320	MGI:5753255	unclassified gene	predicted gene 44679
7	gene	91.56437	91.56729	positive	MGI_C57BL6J_5753251	Gm44675	ENSEMBL:ENSMUSG00000109370	MGI:5753251	unclassified gene	predicted gene 44675
7	gene	91.60896	91.61201	positive	MGI_C57BL6J_5753252	Gm44676	ENSEMBL:ENSMUSG00000109217	MGI:5753252	unclassified gene	predicted gene 44676
7	gene	91.62727	91.63101	positive	MGI_C57BL6J_5753253	Gm44677	ENSEMBL:ENSMUSG00000109505	MGI:5753253	unclassified gene	predicted gene 44677
7	gene	91.63524	91.63815	positive	MGI_C57BL6J_5753256	Gm44680	ENSEMBL:ENSMUSG00000109044	MGI:5753256	unclassified gene	predicted gene 44680
7	gene	91.64771	91.64855	positive	MGI_C57BL6J_5753257	Gm44681	ENSEMBL:ENSMUSG00000109256	MGI:5753257	unclassified gene	predicted gene 44681
7	gene	91.66715	91.66729	negative	MGI_C57BL6J_5453705	Gm23928	ENSEMBL:ENSMUSG00000064403	MGI:5453705	snRNA gene	predicted gene, 23928
7	gene	91.68947	91.69021	positive	MGI_C57BL6J_1924862	C030038I04Rik	ENSEMBL:ENSMUSG00000109037	MGI:1924862	unclassified gene	RIKEN cDNA C030038I04 gene
7	gene	91.81617	91.81955	positive	MGI_C57BL6J_5753706	Gm45130	ENSEMBL:ENSMUSG00000109481	MGI:5753706	unclassified gene	predicted gene 45130
7	gene	91.90806	91.91029	positive	MGI_C57BL6J_5753705	Gm45129	ENSEMBL:ENSMUSG00000108953	MGI:5753705	unclassified gene	predicted gene 45129
7	gene	91.93277	91.96076	negative	MGI_C57BL6J_5591512	Gm32353	NCBI_Gene:102634874	MGI:5591512	lncRNA gene	predicted gene, 32353
7	gene	92.06459	92.06717	positive	MGI_C57BL6J_5753707	Gm45131	ENSEMBL:ENSMUSG00000109191	MGI:5753707	unclassified gene	predicted gene 45131
7	gene	92.08109	92.08254	negative	MGI_C57BL6J_1918245	4931412I15Rik	ENSEMBL:ENSMUSG00000108826	MGI:1918245	unclassified gene	RIKEN cDNA 4931412I15 gene
7	gene	92.09221	92.11951	negative	MGI_C57BL6J_1923095	4930567K12Rik	NCBI_Gene:75845,ENSEMBL:ENSMUSG00000109382	MGI:1923095	lncRNA gene	RIKEN cDNA 4930567K12 gene
7	gene	92.40818	92.41137	positive	MGI_C57BL6J_1926094	B230206I08Rik	ENSEMBL:ENSMUSG00000109574	MGI:1926094	unclassified gene	RIKEN cDNA B230206I08 gene
7	gene	92.43117	92.43385	positive	MGI_C57BL6J_5753777	Gm45201	ENSEMBL:ENSMUSG00000109031	MGI:5753777	unclassified gene	predicted gene 45201
7	pseudogene	92.46923	92.47823	positive	MGI_C57BL6J_5590650	Gm31491	NCBI_Gene:102633738	MGI:5590650	pseudogene	predicted gene, 31491
7	gene	92.56115	92.58229	positive	MGI_C57BL6J_1913615	Ccdc90b	NCBI_Gene:66365,ENSEMBL:ENSMUSG00000030613	MGI:1913615	protein coding gene	coiled-coil domain containing 90B
7	gene	92.58172	92.63714	negative	MGI_C57BL6J_1921095	Ankrd42	NCBI_Gene:73845,ENSEMBL:ENSMUSG00000041343	MGI:1921095	protein coding gene	ankyrin repeat domain 42
7	gene	92.63719	92.64830	positive	MGI_C57BL6J_5504059	Gm26944	NCBI_Gene:102635071,ENSEMBL:ENSMUSG00000098066	MGI:5504059	lncRNA gene	predicted gene, 26944
7	gene	92.63721	92.63753	positive	MGI_C57BL6J_5610236	Gm37008	ENSEMBL:ENSMUSG00000103887	MGI:5610236	unclassified gene	predicted gene, 37008
7	gene	92.63995	92.64378	positive	MGI_C57BL6J_2443259	6430511E19Rik	ENSEMBL:ENSMUSG00000102555	MGI:2443259	unclassified gene	RIKEN cDNA 6430511E19 gene
7	gene	92.64354	92.67005	negative	MGI_C57BL6J_1919579	Pcf11	NCBI_Gene:74737,ENSEMBL:ENSMUSG00000041328	MGI:1919579	protein coding gene	PCF11 cleavage and polyadenylation factor subunit
7	pseudogene	92.69368	92.69791	negative	MGI_C57BL6J_3780719	Gm2551	NCBI_Gene:100040007	MGI:3780719	pseudogene	predicted gene 2551
7	gene	92.70677	92.70828	positive	MGI_C57BL6J_5753775	Gm45199	ENSEMBL:ENSMUSG00000109395	MGI:5753775	unclassified gene	predicted gene 45199
7	gene	92.72984	92.73375	positive	MGI_C57BL6J_5504096	Gm26981	ENSEMBL:ENSMUSG00000098041	MGI:5504096	lncRNA gene	predicted gene, 26981
7	gene	92.73417	92.74147	negative	MGI_C57BL6J_1915436	4632427E13Rik	NCBI_Gene:666737,ENSEMBL:ENSMUSG00000074024	MGI:1915436	lncRNA gene	RIKEN cDNA 4632427E13 gene
7	gene	92.74160	92.84453	positive	MGI_C57BL6J_1923235	Rab30	NCBI_Gene:75985,ENSEMBL:ENSMUSG00000030643	MGI:1923235	protein coding gene	RAB30, member RAS oncogene family
7	gene	92.77850	92.77942	positive	MGI_C57BL6J_5753776	Gm45200	ENSEMBL:ENSMUSG00000109257	MGI:5753776	unclassified gene	predicted gene 45200
7	gene	92.82056	92.82077	positive	MGI_C57BL6J_1917506	2010107C10Rik	NA	NA	unclassified gene	RIKEN cDNA 2010107C10 gene
7	gene	92.85752	92.87429	negative	MGI_C57BL6J_1921291	Ddias	NCBI_Gene:74041,ENSEMBL:ENSMUSG00000030641	MGI:1921291	protein coding gene	DNA damage-induced apoptosis suppressor
7	gene	92.87447	92.93458	positive	MGI_C57BL6J_1919711	Prcp	NCBI_Gene:72461,ENSEMBL:ENSMUSG00000061119	MGI:1919711	protein coding gene	prolylcarboxypeptidase (angiotensinase C)
7	gene	92.87743	92.88999	positive	MGI_C57BL6J_5623333	Gm40448	NCBI_Gene:105244926	MGI:5623333	lncRNA gene	predicted gene, 40448
7	gene	92.90218	92.90287	positive	MGI_C57BL6J_1925814	9530078K11Rik	ENSEMBL:ENSMUSG00000109268	MGI:1925814	unclassified gene	RIKEN cDNA 9530078K11 gene
7	pseudogene	92.97925	93.00654	positive	MGI_C57BL6J_5590822	Gm31663	NCBI_Gene:102633966,ENSEMBL:ENSMUSG00000108994	MGI:5590822	pseudogene	predicted gene, 31663
7	gene	93.00698	93.10479	positive	MGI_C57BL6J_5477356	Gm26862	ENSEMBL:ENSMUSG00000097644	MGI:5477356	lncRNA gene	predicted gene, 26862
7	gene	93.05208	93.08103	negative	MGI_C57BL6J_3641747	Gm9934	ENSEMBL:ENSMUSG00000054061	MGI:3641747	lncRNA gene	predicted gene 9934
7	gene	93.07986	93.08187	positive	MGI_C57BL6J_1930951	Fam181b	NCBI_Gene:58238,ENSEMBL:ENSMUSG00000051515	MGI:1930951	protein coding gene	family with sequence similarity 181, member B
7	gene	93.14785	93.14797	negative	MGI_C57BL6J_5455637	Gm25860	ENSEMBL:ENSMUSG00000088877	MGI:5455637	snoRNA gene	predicted gene, 25860
7	pseudogene	93.16883	93.17267	positive	MGI_C57BL6J_5753291	Gm44715	ENSEMBL:ENSMUSG00000109196	MGI:5753291	pseudogene	predicted gene 44715
7	pseudogene	93.17898	93.18418	negative	MGI_C57BL6J_3704296	Gm15501	NCBI_Gene:100040298,ENSEMBL:ENSMUSG00000087412	MGI:3704296	pseudogene	predicted pseudogene 15501
7	gene	93.29070	93.32395	negative	MGI_C57BL6J_5753523	Gm44947	ENSEMBL:ENSMUSG00000109175	MGI:5753523	lncRNA gene	predicted gene 44947
7	gene	93.36168	93.38086	positive	MGI_C57BL6J_5753613	Gm45037	ENSEMBL:ENSMUSG00000109315	MGI:5753613	lncRNA gene	predicted gene 45037
7	pseudogene	93.52306	93.52690	positive	MGI_C57BL6J_5753614	Gm45038	ENSEMBL:ENSMUSG00000109195	MGI:5753614	pseudogene	predicted gene 45038
7	pseudogene	93.56494	93.56570	negative	MGI_C57BL6J_3645456	Gm8285	NCBI_Gene:666783,ENSEMBL:ENSMUSG00000109077	MGI:3645456	pseudogene	predicted gene 8285
7	gene	93.60484	93.60832	negative	MGI_C57BL6J_5753615	Gm45039	ENSEMBL:ENSMUSG00000109226	MGI:5753615	unclassified gene	predicted gene 45039
7	pseudogene	93.66024	93.66056	negative	MGI_C57BL6J_5052079	Bc1-ps1	NCBI_Gene:12031,ENSEMBL:ENSMUSG00000109440	MGI:5052079	pseudogene	brain cytoplasmic RNA 1, pseudogene 1
7	pseudogene	93.84690	93.84783	negative	MGI_C57BL6J_5010382	Gm18197	NCBI_Gene:100416690	MGI:5010382	pseudogene	predicted gene, 18197
7	gene	94.04250	95.32643	positive	MGI_C57BL6J_5591806	Gm32647	NCBI_Gene:102635262,ENSEMBL:ENSMUSG00000108532	MGI:5591806	lncRNA gene	predicted gene, 32647
7	pseudogene	94.19642	94.19756	positive	MGI_C57BL6J_3643908	Gm5899	NCBI_Gene:545982,ENSEMBL:ENSMUSG00000096033	MGI:3643908	pseudogene	predicted pseudogene 5899
7	gene	94.36898	94.37257	negative	MGI_C57BL6J_5753177	Gm44601	ENSEMBL:ENSMUSG00000108315	MGI:5753177	lncRNA gene	predicted gene 44601
7	pseudogene	94.47558	94.47571	positive	MGI_C57BL6J_5753178	Gm44602	ENSEMBL:ENSMUSG00000108516	MGI:5753178	pseudogene	predicted gene 44602
7	pseudogene	94.60182	94.60263	negative	MGI_C57BL6J_5011946	Gm19761	NCBI_Gene:100503542,ENSEMBL:ENSMUSG00000108433	MGI:5011946	pseudogene	predicted gene, 19761
7	gene	95.17186	95.17216	positive	MGI_C57BL6J_5453661	Gm23884	ENSEMBL:ENSMUSG00000084636	MGI:5453661	unclassified non-coding RNA gene	predicted gene, 23884
7	gene	95.44235	95.44246	negative	MGI_C57BL6J_5455461	Gm25684	ENSEMBL:ENSMUSG00000065875	MGI:5455461	snRNA gene	predicted gene, 25684
7	pseudogene	95.46191	95.46356	positive	MGI_C57BL6J_3643545	Gm8309	NCBI_Gene:666823,ENSEMBL:ENSMUSG00000108786	MGI:3643545	pseudogene	predicted gene 8309
7	pseudogene	95.47495	95.47531	positive	MGI_C57BL6J_5753179	Gm44603	ENSEMBL:ENSMUSG00000108429	MGI:5753179	pseudogene	predicted gene 44603
7	gene	95.77545	95.78117	positive	MGI_C57BL6J_5621934	Gm39049	NCBI_Gene:105242997	MGI:5621934	lncRNA gene	predicted gene, 39049
7	pseudogene	95.91275	95.91339	negative	MGI_C57BL6J_3648478	Gm5037	NCBI_Gene:260347,ENSEMBL:ENSMUSG00000108628	MGI:3648478	pseudogene	predicted gene 5037
7	gene	95.95821	95.96161	positive	MGI_C57BL6J_3641871	Gm9966	NA	NA	protein coding gene	predicted gene 9966
7	gene	96.17124	96.91109	positive	MGI_C57BL6J_2447063	Tenm4	NCBI_Gene:23966,ENSEMBL:ENSMUSG00000048078	MGI:2447063	protein coding gene	teneurin transmembrane protein 4
7	pseudogene	96.20239	96.20364	negative	MGI_C57BL6J_3646693	Gm8319	NCBI_Gene:666836,ENSEMBL:ENSMUSG00000108528	MGI:3646693	pseudogene	predicted gene 8319
7	gene	96.24942	96.24953	positive	MGI_C57BL6J_3629686	Mir708	miRBase:MI0004692,NCBI_Gene:735284,ENSEMBL:ENSMUSG00000076143	MGI:3629686	miRNA gene	microRNA 708
7	gene	96.30567	96.30576	positive	MGI_C57BL6J_5531311	Mir6394	miRBase:MI0021928,NCBI_Gene:102465210,ENSEMBL:ENSMUSG00000099030	MGI:5531311	miRNA gene	microRNA 6394
7	gene	96.33948	96.34196	negative	MGI_C57BL6J_3705100	Gm15412	NCBI_Gene:670727,ENSEMBL:ENSMUSG00000085751	MGI:3705100	lncRNA gene	predicted gene 15412
7	pseudogene	96.43482	96.43675	negative	MGI_C57BL6J_3647437	Rps11-ps5	NCBI_Gene:102635492,ENSEMBL:ENSMUSG00000082780	MGI:3647437	pseudogene	ribosomal protein S11, pseudogene 5
7	gene	96.58581	96.58691	positive	MGI_C57BL6J_1924457	8030425K09Rik	NA	NA	unclassified gene	RIKEN cDNA 8030425K09 gene
7	gene	96.59665	96.62907	negative	MGI_C57BL6J_3705307	Gm15414	ENSEMBL:ENSMUSG00000085792	MGI:3705307	lncRNA gene	predicted gene 15414

Interactive term

Significance thresholds

operm <- scan1perm(pr.qc, covars["rz.age"], model="normal", addcovar=addcovar, intcovar=addcovar, n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	3.235938	3.515383
0.05	3.164829	3.271927
0.1	3.075726	2.953547

Genome-wide scan

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
#par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - ICI vs. PBS (with interactive covariate) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')

  }
}


print("with no kinship")

[1] “with no kinship”

outfi <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar)

plot_lod(outfi,gm$gmap)

outf.new <- outfi-outfa

plot_lod(outf.new,gm$gmap)

print("with normal kinship")

[1] “with normal kinship”

outki <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar, kinship=kinship)

plot_lod(outki,gm$gmap)

outk.new <- outki-outka

plot_lod(outk.new,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

outi <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar, kinship=K)

plot_lod(outi,gm$gmap)

outi.new <- outi-outa

plot_lod(outi.new,gm$gmap)

out = outi.new


print(paste0("number of samples in analysis = ", as.data.frame(attributes(out)$sample_size)[1,]))

[1] “number of samples in analysis = 138”

LOD peaks

Centimorgan (cM)

peaks<-find_peaks(out, gm$gmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)

if(nrow(peaks) >0){
peaks$marker <- find_marker(gm$gmap, chr=peaks$chr,pos=peaks$pos)
names(peaks)[2] <- c("phenotype")
peaks <- peaks[-1]

rownames(peaks) <- NULL
print(kable(peaks, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

#plot only peak chromosomes

plot_lod_chr<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. PBS (with interactive covariate) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()

  }
}


for(i in unique(peaks$chr)){
#for (i in 1:nrow(peaks)){
  #plot_lod_chr(out,gm$gmap, peaks$chr[i])
  plot_lod_chr(out,gm$gmap, i)
}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 3.16482882218745 [autosomes]/3.27192663850509 [x-chromosome]”

Megabase (MB)

peaks_mba<-find_peaks(out, gm$pmap, threshold=summary(operm,alpha=0.05)$A, thresholdX = summary(operm,alpha=0.05)$X, peakdrop=3, drop=1.5)

if(nrow(peaks) >0){
peaks_mba$marker <- find_marker(gm$pmap, chr=peaks_mba$chr,pos=peaks_mba$pos)
names(peaks_mba)[2] <- c("phenotype")
peaks_mba <- peaks_mba[-1]

rownames(peaks_mba) <- NULL
print(kable(peaks_mba, escape = F, align = c("cccccccc"), "html") 
  %>% kable_styling("striped", full_width = T)%>%
  column_spec(1, bold=TRUE)
  )

plot_lod_chr_mb<-function(out,map,chrom){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, map, chr = chrom, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    #legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i], " - chr", chrom, " - ICI vs. PBS (with interactive covariate) [positions in cM]"))
    add_threshold(map,  summary(operm,alpha=0.1), col = 'purple')
    add_threshold(map,  summary(operm, alpha=0.05), col = 'red')
    add_threshold(map,  summary(operm, alpha=0.01), col = 'blue')
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}

for(i in unique(peaks_mba$chr)){
#for (i in 1:nrow(peaks_mba)){
  #plot_lod_chr_mb(out,gm$pmap, peaks_mba$chr[i])
  plot_lod_chr_mb(out,gm$pmap,i)
}

} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 3.16482882218745 [autosomes]/3.27192663850509 [x-chromosome]”

QTL effects

For each peak LOD location we give a list of gene

if(nrow(peaks) >0){
for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE)
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(g, covars[,peaks$phenotype[i]], ylab=peaks$phenotype[i], sort=FALSE)
  title(main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," )"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  pr_sub <- pull_genoprobint(pr.qc, gm$gmap, chr, c(peaks$ci_lo[i], peaks$ci_hi[i]))
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  #coeff <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  #coeff_sub <- scan1coef(pr_sub[,chr], gm$covar[peaks$lodcolumn[i]], model="binary")
  blup <- scan1blup(pr.qc[,chr], covars[peaks$phenotype[i]])
  blup_sub <- scan1blup(pr_sub[,chr], covars[peaks$phenotype[i]])

  write.csv(as.data.frame(blup_sub), paste0("data/ici.vs.pbs_",peaks$phenotype[i],"-interactive.covariate_blup_sub_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_snpsqc_5.batches.csv"), quote=F)

  #plot_coef(coeff, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i]," [scan1coeff; positions in cM] )")
  #     )

  #plot_coef(coeff_sub, 
  #     gm$gmap, columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$lodcolumn[i],"; 1.5 LOD drop interval [scan1coeff; positions in cM] ) ")
  #     )


  plot_coef(blup, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i]," [scan1blup; positions in cM] )")
       )

  plot_coef(blup_sub, 
       gm$gmap, columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste0("chr: ", chr=peaks$chr[i],"; pos: ", peaks$pos[i], "cM /",peaks_mba$pos[i],"MB\n(",peaks$phenotype[i],"; 1.5 LOD drop interval [scan1blup; positions in cM] )")
       )


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], gm$covar[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  write.csv(genesgss, file=paste0("data/ici.vs.pbs_",peaks$phenotype[i],"-interactive.covariate_genes_chr-",chr,"_peak.marker-",peaks$marker[i],"_lod.drop-1.5_snpsqc_5.batches.csv"), quote=F)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  #genesgss <- 
  #table <- 
  #genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")] %>%
  #kable(escape = F,align = c("ccccccccccc")) %>%
  #kable_styling("striped", full_width = T) #%>% 
  #cat #%>%
  #column_spec(1, bold=TRUE)
#
  #print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], escape = F,align = c("ccccccccccc")))

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  #table
  

}
} else {
  print(paste0("There are no peaks that have a LOD that reaches suggestive (p<0.05) level of ",summary(operm,alpha=0.05)$A, " [autosomes]/",summary(operm,alpha=0.05)$X, " [x-chromosome]"))
}

[1] “There are no peaks that have a LOD that reaches suggestive (p<0.05) level of 3.16482882218745 [autosomes]/3.27192663850509 [x-chromosome]”

Session information

R version 3.6.2 (2019-12-12)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Catalina 10.15.7

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] abind_1.4-5       qtl2_0.22         reshape2_1.4.4    ggplot2_3.3.5    
 [5] tibble_3.1.2      psych_2.0.7       readxl_1.3.1      cluster_2.1.0    
 [9] dplyr_1.0.8       optparse_1.6.6    rhdf5_2.28.1      mclust_5.4.6     
[13] tidyr_1.0.2       data.table_1.14.0 knitr_1.33        kableExtra_1.1.0 
[17] workflowr_1.6.2  

loaded via a namespace (and not attached):
 [1] httr_1.4.1        bit64_4.0.5       viridisLite_0.4.0 assertthat_0.2.1 
 [5] highr_0.9         blob_1.2.1        cellranger_1.1.0  yaml_2.2.1       
 [9] pillar_1.6.1      RSQLite_2.2.7     backports_1.2.1   lattice_0.20-38  
[13] glue_1.4.2        digest_0.6.27     promises_1.1.0    rvest_0.3.5      
[17] colorspace_2.0-2  htmltools_0.5.1.1 httpuv_1.5.2      plyr_1.8.6       
[21] pkgconfig_2.0.3   purrr_0.3.4       scales_1.1.1      webshot_0.5.2    
[25] whisker_0.4       getopt_1.20.3     later_1.0.0       git2r_0.26.1     
[29] generics_0.0.2    ellipsis_0.3.2    cachem_1.0.5      withr_2.4.2      
[33] cli_3.0.0         mnormt_1.5-7      magrittr_2.0.1    crayon_1.4.1     
[37] memoise_2.0.0     evaluate_0.14     fs_1.4.1          fansi_0.5.0      
[41] nlme_3.1-142      xml2_1.3.1        tools_3.6.2       hms_0.5.3        
[45] lifecycle_1.0.1   stringr_1.4.0     Rhdf5lib_1.6.3    munsell_0.5.0    
[49] compiler_3.6.2    rlang_1.0.2       grid_3.6.2        rstudioapi_0.13  
[53] rmarkdown_2.1     gtable_0.3.0      DBI_1.1.1         R6_2.5.0         
[57] fastmap_1.1.0     bit_4.0.4         utf8_1.2.1        rprojroot_1.3-2  
[61] readr_1.3.1       stringi_1.7.2     parallel_3.6.2    Rcpp_1.0.7       
[65] vctrs_0.3.8       tidyselect_1.1.2  xfun_0.24