QTL Analysis - rz transformed age of onset (rz.age) [ICI vs EOI] (corrected phenotype, disproportionate markers removed)

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Genome-wide scan

Last updated: 2022-02-25

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Knit directory: Serreze-T1D_Workflow/

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Loading Data

load("data/gm_allqc_4.batches.RData")

#gm_allqc
gm=gm_allqc
gm

Object of class cross2 (crosstype "bc")

Total individuals               188
No. genotyped individuals       188
No. phenotyped individuals      188
No. with both geno & pheno      188

No. phenotypes                    1
No. covariates                    6
No. phenotype covariates          0

No. chromosomes                  20
Total markers                131578

No. markers by chr:
    1     2     3     4     5     6     7     8     9    10    11    12    13 
 9977 10005  7858  7589  7621  7758  7413  6472  6725  6396  7154  6137  6085 
   14    15    16    17    18    19     X 
 5981  5346  5019  5093  4607  3564  4778

#pr <- readRDS("data/serreze_probs_allqc.rds")
#pr <- readRDS("data/serreze_probs.rds")

##extracting animals with ici and eoi group status
miceinfo <- gm$covar[gm$covar$group == "EOI" | gm$covar$group == "ICI",]
table(miceinfo$group)


EOI ICI 
 69  92

mice.ids <- rownames(miceinfo)

gm <- gm[mice.ids]
gm

Object of class cross2 (crosstype "bc")

Total individuals               161
No. genotyped individuals       161
No. phenotyped individuals      161
No. with both geno & pheno      161

No. phenotypes                    1
No. covariates                    6
No. phenotype covariates          0

No. chromosomes                  20
Total markers                131578

No. markers by chr:
    1     2     3     4     5     6     7     8     9    10    11    12    13 
 9977 10005  7858  7589  7621  7758  7413  6472  6725  6396  7154  6137  6085 
   14    15    16    17    18    19     X 
 5981  5346  5019  5093  4607  3564  4778

table(gm$covar$group)


EOI ICI 
 69  92

#bin_pheno <- NULL
#bin_pheno$EOI <- ifelse(gm$covar$group == "EOI", 1, 0)
#bin_pheno$ICI <- ifelse(gm$covar$group == "ICI", 1, 0)
#bin_pheno <- as.data.frame(bin_pheno)
#rownames(bin_pheno) <- rownames(gm$covar)

covars <- read_csv("data/covar_corrected_ici.vs.eoi.csv")
#removing any missing info
#covars <- subset(covars, covars$rz.age!='')
nrow(covars)

[1] 161

table(covars$group)


EOI ICI 
 69  92

#keeping only informative mice
gm <- gm[covars$Mouse.ID]
gm

Object of class cross2 (crosstype "bc")

Total individuals               161
No. genotyped individuals       161
No. phenotyped individuals      161
No. with both geno & pheno      161

No. phenotypes                    1
No. covariates                    6
No. phenotype covariates          0

No. chromosomes                  20
Total markers                131578

No. markers by chr:
    1     2     3     4     5     6     7     8     9    10    11    12    13 
 9977 10005  7858  7589  7621  7758  7413  6472  6725  6396  7154  6137  6085 
   14    15    16    17    18    19     X 
 5981  5346  5019  5093  4607  3564  4778

table(gm$covar$group)


EOI ICI 
 69  92

#pr.qc.ids <- pr
#for (i in 1:20){pr.qc.ids[[i]] = pr.qc.ids[[i]][covars$Mouse.ID,,]}

query_variants <- create_variant_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/cc_variants.sqlite")
query_genes <- create_gene_query_func("/Users/corneb/Documents/MyJax/CS/Projects/support.files/qtl2/mouse_genes_mgi.sqlite")


##dropping monomorphic markers within the dataset

g <- do.call("cbind", gm$geno)

gf_mar <- t(apply(g, 2, function(a) table(factor(a, 1:2))/sum(a != 0)))
#gn_mar <- t(apply(g, 2, function(a) table(factor(a, 1:2))))

gf_mar <- gf_mar[gf_mar[,2] != "NaN",]

count <- rowSums(gf_mar <=0.05)
low_freq_df <- merge(as.data.frame(gf_mar),as.data.frame(count), by="row.names",all=T)
low_freq_df[is.na(low_freq_df)] <- ''
low_freq_df <- low_freq_df[low_freq_df$count == 1,]
rownames(low_freq_df) <- low_freq_df$Row.names

low_freq <- find_markerpos(gm, rownames(low_freq_df))
low_freq$id <- rownames(low_freq)

nrow(low_freq)

[1] 99077

low_freq_bad <- merge(low_freq,low_freq_df, by="row.names",all=T)
names(low_freq_bad)[1] <- c("marker")

gf_mar <- gf_mar[gf_mar[,2] != "NaN",]
MAF <- apply(gf_mar, 1, function(x) min(x))
MAF <- as.data.frame(MAF)
MAF$index <- 1:nrow(gf_mar)
gf_mar_maf <- merge(gf_mar,as.data.frame(MAF), by="row.names")
gf_mar_maf <- gf_mar_maf[order(gf_mar_maf$index),]

gfmar <- NULL
gfmar$gfmar_mar_0 <- sum(gf_mar_maf$MAF==0)
gfmar$gfmar_mar_1 <- sum(gf_mar_maf$MAF< 0.01)
gfmar$gfmar_mar_5 <- sum(gf_mar_maf$MAF< 0.05)
gfmar$gfmar_mar_10 <- sum(gf_mar_maf$MAF< 0.10)
gfmar$gfmar_mar_15 <- sum(gf_mar_maf$MAF< 0.15)
gfmar$gfmar_mar_25 <- sum(gf_mar_maf$MAF< 0.25)
gfmar$gfmar_mar_50 <- sum(gf_mar_maf$MAF< 0.50)
gfmar$total_snps <- nrow(as.data.frame(gf_mar_maf))

gfmar <- t(as.data.frame(gfmar))
gfmar <- as.data.frame(gfmar)
gfmar$count <- gfmar$V1

gfmar[c(2)] %>%
  kable(escape = F,align = c("ccccccccc"),linesep ="\\hline") %>%
  kable_styling(full_width = F) %>%
  kable_styling("striped", full_width = F)  %>%
  row_spec(8 ,bold=T,color= "white",background = "black")

	count
gfmar_mar_0	89667
gfmar_mar_1	92615
gfmar_mar_5	99045
gfmar_mar_10	99502
gfmar_mar_15	99619
gfmar_mar_25	100097
gfmar_mar_50	131139
total_snps	131578

gm_qc <- drop_markers(gm, low_freq_bad$marker)
gm_qc <- drop_nullmarkers(gm_qc)

gm_qc

Object of class cross2 (crosstype "bc")

Total individuals              161
No. genotyped individuals      161
No. phenotyped individuals     161
No. with both geno & pheno     161

No. phenotypes                   1
No. covariates                   6
No. phenotype covariates         0

No. chromosomes                 20
Total markers                32501

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
2940 2853 2033 2045 1931 2041 1858 1677 1991 1208 2057 1387 1617 1685 1194  922 
  17   18   19    X 
 382 1073 1052  555

## dropping disproportionate markers
dismark <- read.csv("data/ici.vs.eoi_marker.freq_low.geno.freq.removed_geno.ratio.csv")
nrow(dismark)

[1] 32501

names(dismark)[1] <- c("marker")
dismark <- dismark[!dismark$Include,]
nrow(dismark)

[1] 18736

gm_qc_dis <- drop_markers(gm_qc, dismark$marker)
gm_qc_dis <- drop_nullmarkers(gm_qc_dis)

gm = gm_qc_dis
gm

Object of class cross2 (crosstype "bc")

Total individuals              161
No. genotyped individuals      161
No. phenotyped individuals     161
No. with both geno & pheno     161

No. phenotypes                   1
No. covariates                   6
No. phenotype covariates         0

No. chromosomes                 19
Total markers                13765

No. markers by chr:
   1    2    3    4    5    6    7    8    9   10   11   12   13   14   16   17 
2142 1860 1022  570  688  514 1060  294  772  205  718   11 1270 1105  490  291 
  18   19    X 
 494  208   51

markers <- marker_names(gm)
gmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_hh/genetic_map.csv")
pmapdf <- read.csv("/Users/corneb/Documents/MyJax/CS/Projects/Serreze/haplotype.reconstruction/output_hh/physical_map.csv")
mapdf <- merge(gmapdf,pmapdf, by=c("marker","chr"), all=T)
rownames(mapdf) <- mapdf$marker
mapdf <- mapdf[markers,]
names(mapdf) <- c('marker','chr','gmapdf','pmapdf')
mapdfnd <- mapdf[!duplicated(mapdf[c(2:3)]),]

pr.qc <- calc_genoprob(gm)

Genome-wide scan

covars$rz.age <- as.numeric(covars$rz.age)
Xcovar <- get_x_covar(gm)
addcovar = model.matrix(~ICI.vs.EOI, data = covars)[,-1]
#addcovar.i = model.matrix(~ICI.vs.EOI, data = covars)[,-1]

K <- calc_kinship(pr.qc, type = "loco")
#heatmap(K[[1]])
K.overall <- calc_kinship(pr.qc, type = "overall")
#heatmap(K.overall)
kinship <- calc_kinship(pr.qc)
heatmap(kinship)

No additive covariates

operm <- scan1perm(pr.qc, covars["rz.age"], model="normal", n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	2.871791	2.695237
0.05	2.871011	2.655385
0.1	2.870036	2.604957

#summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, gm$gmap, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i]," - ICI vs. EOI (no covariates)"))
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}


print("with no kinship")

[1] “with no kinship”

outf <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal")

plot_lod(outf,gm$gmap)

print("with normal kinship")

[1] “with normal kinship”

outk <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", kinship=kinship)

plot_lod(outk,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

out <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", kinship=K)

plot_lod(out,gm$gmap)

peaks<-find_peaks(out, gm$gmap, threshold=2.5, drop=1.5)

rownames(peaks) <- NULL
peaks[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	rz.age	3	21.429	2.830632	21.228	35.891

peaks_mbl <- list()
#corresponding info in Mb
for(i in 1:nrow(peaks)){
  lodindex <- peaks$lodindex[i]
  lodcolumn <- peaks$lodcolumn[i]
  chr <- as.character(peaks$chr[i])
  lod <- peaks$lod[i]
  mark <- find_marker(gm$gmap, chr=chr,pos=peaks$pos[i])
  pos <- mapdf[mapdf$marker==mark,]$pmapdf
  ci_lo <- mapdfnd$pmapdf[which(mapdfnd$gmapdf == peaks$ci_lo[i] & mapdfnd$chr == peaks$chr[i])]
  ci_hi <- mapdfnd$pmapdf[which(mapdfnd$gmapdf == peaks$ci_hi[i] & mapdfnd$chr == peaks$chr[i])]
  peaks_mb=cbind(lodindex, lodcolumn, chr, pos, lod, ci_lo, ci_hi)
  peaks_mbl[[i]] <- peaks_mb
}
peaks_mba <- do.call(rbind, peaks_mbl)
peaks_mba <- as.data.frame(peaks_mba)
#peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")] <- sapply(peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")], as.numeric)

rownames(peaks_mba) <- NULL
peaks_mba[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	rz.age	3	48.642133	2.8306318003897	48.232305	81.503929

for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  marker = find_marker(gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i])
  #g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE, minprob = 0.5)
  gp <- g[,marker]
  gp[gp==1] <- "AA"
  gp[gp==2] <- "AB"
  gp[gp==0] <- NA
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(gp, covars[,peaks$lodcolumn[i]], ylab=peaks$lodcolumn[i], sort=FALSE)
  title(main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  coeff <- scan1coef(pr.qc[,chr], covars[peaks$lodcolumn[i]], kinship=K[[chr]])
  blup <- scan1blup(pr.qc[,chr], covars[peaks$lodcolumn[i]], kinship=K[[chr]])

  #plot_coef(coeff, 
  #     gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i]," [scan1coeff])")
  #     )

  plot_coef(blup, 
       gm$gmap[chr], columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i]," [scan1blup])")
       )
  #last_coef <- unclass(coeff)[nrow(coeff),1:3]
  #for(t in seq(along=last_coef))
  #axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], covars[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], covars[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"


  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  
}

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
3	gene	48.54642	48.57947	positive	MGI_C57BL6J_5826472	Gm46835	NCBI_Gene:108168915	MGI:5826472	lncRNA gene	predicted gene, 46835
3	gene	48.60573	48.60910	negative	MGI_C57BL6J_1913582	1700018B24Rik	NCBI_Gene:66332,ENSEMBL:ENSMUSG00000037910	MGI:1913582	lncRNA gene	RIKEN cDNA 1700018B24 gene
3	gene	48.74851	48.76095	negative	MGI_C57BL6J_5610418	Gm37190	ENSEMBL:ENSMUSG00000102181	MGI:5610418	lncRNA gene	predicted gene, 37190
3	gene	48.95472	48.95488	positive	MGI_C57BL6J_5453288	Gm23511	ENSEMBL:ENSMUSG00000065018	MGI:5453288	snRNA gene	predicted gene, 23511
3	gene	49.06237	49.09636	positive	MGI_C57BL6J_5590574	Gm31415	NCBI_Gene:102633632,ENSEMBL:ENSMUSG00000102263	MGI:5590574	lncRNA gene	predicted gene, 31415
3	gene	49.13746	49.13853	positive	MGI_C57BL6J_5611047	Gm37819	ENSEMBL:ENSMUSG00000104186	MGI:5611047	unclassified gene	predicted gene, 37819
3	pseudogene	49.20771	49.20807	negative	MGI_C57BL6J_5610912	Gm37684	ENSEMBL:ENSMUSG00000103027	MGI:5610912	pseudogene	predicted gene, 37684
3	gene	49.32568	49.36736	positive	MGI_C57BL6J_5295664	Gm20557	NCBI_Gene:329633,ENSEMBL:ENSMUSG00000102679	MGI:5295664	lncRNA gene	predicted gene, 20557
3	pseudogene	49.38115	49.38285	negative	MGI_C57BL6J_3643624	Gm5846	NCBI_Gene:545519,ENSEMBL:ENSMUSG00000104309	MGI:3643624	pseudogene	predicted gene 5846
3	pseudogene	49.40082	49.46744	negative	MGI_C57BL6J_3780091	Gm9683	NCBI_Gene:676568	MGI:3780091	pseudogene	predicted gene 9683
3	gene	49.49135	49.49148	positive	MGI_C57BL6J_5452257	Gm22480	ENSEMBL:ENSMUSG00000084517	MGI:5452257	snoRNA gene	predicted gene, 22480
3	pseudogene	49.53075	49.53131	positive	MGI_C57BL6J_5610652	Gm37424	ENSEMBL:ENSMUSG00000104437	MGI:5610652	pseudogene	predicted gene, 37424
3	pseudogene	49.60356	49.60388	positive	MGI_C57BL6J_5611489	Gm38261	ENSEMBL:ENSMUSG00000102731	MGI:5611489	pseudogene	predicted gene, 38261
3	pseudogene	49.60423	49.60447	positive	MGI_C57BL6J_5611316	Gm38088	ENSEMBL:ENSMUSG00000103249	MGI:5611316	pseudogene	predicted gene, 38088
3	pseudogene	49.63244	49.63297	negative	MGI_C57BL6J_3780498	Gm2328	NCBI_Gene:100039587,ENSEMBL:ENSMUSG00000104134	MGI:3780498	pseudogene	predicted gene 2328
3	pseudogene	49.64348	49.64413	positive	MGI_C57BL6J_5588900	Gm29741	NCBI_Gene:101055903,ENSEMBL:ENSMUSG00000103568	MGI:5588900	pseudogene	predicted gene, 29741
3	gene	49.65876	49.65887	positive	MGI_C57BL6J_5452873	Gm23096	ENSEMBL:ENSMUSG00000065381	MGI:5452873	snRNA gene	predicted gene, 23096
3	gene	49.74329	49.75738	negative	MGI_C57BL6J_1920423	Pcdh18	NCBI_Gene:73173,ENSEMBL:ENSMUSG00000037892	MGI:1920423	protein coding gene	protocadherin 18
3	pseudogene	49.78043	49.78089	negative	MGI_C57BL6J_5610778	Gm37550	ENSEMBL:ENSMUSG00000102943	MGI:5610778	pseudogene	predicted gene, 37550
3	gene	49.89253	50.49909	negative	MGI_C57BL6J_1347355	Slc7a11	NCBI_Gene:26570,ENSEMBL:ENSMUSG00000027737	MGI:1347355	protein coding gene	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
3	gene	50.00197	50.01078	positive	MGI_C57BL6J_5611082	Gm37854	ENSEMBL:ENSMUSG00000102892	MGI:5611082	lncRNA gene	predicted gene, 37854
3	gene	50.01177	50.02624	negative	MGI_C57BL6J_5622927	Gm40042	NCBI_Gene:105244434	MGI:5622927	lncRNA gene	predicted gene, 40042
3	pseudogene	50.02967	50.02999	positive	MGI_C57BL6J_5611054	Gm37826	ENSEMBL:ENSMUSG00000104457	MGI:5611054	pseudogene	predicted gene, 37826
3	pseudogene	50.16666	50.16689	negative	MGI_C57BL6J_5610920	Gm37692	ENSEMBL:ENSMUSG00000104349	MGI:5610920	pseudogene	predicted gene, 37692
3	pseudogene	50.25485	50.25544	positive	MGI_C57BL6J_3780515	Gm2345	NCBI_Gene:100039628,ENSEMBL:ENSMUSG00000102167	MGI:3780515	pseudogene	predicted gene 2345
3	gene	50.40028	50.40428	negative	MGI_C57BL6J_5610726	Gm37498	ENSEMBL:ENSMUSG00000103907	MGI:5610726	unclassified gene	predicted gene, 37498
3	gene	50.51640	50.60731	negative	MGI_C57BL6J_3643374	Gm6209	NCBI_Gene:621304,ENSEMBL:ENSMUSG00000102715	MGI:3643374	lncRNA gene	predicted gene 6209
3	gene	50.57519	50.57652	negative	MGI_C57BL6J_1923259	5830415G21Rik	ENSEMBL:ENSMUSG00000102895	MGI:1923259	unclassified gene	RIKEN cDNA 5830415G21 gene
3	pseudogene	50.59799	50.59850	negative	MGI_C57BL6J_5611465	Gm38237	NCBI_Gene:108168851,ENSEMBL:ENSMUSG00000103745	MGI:5611465	pseudogene	predicted gene, 38237
3	gene	50.62435	50.62841	negative	MGI_C57BL6J_5610427	Gm37199	ENSEMBL:ENSMUSG00000104068	MGI:5610427	unclassified gene	predicted gene, 37199
3	gene	50.67970	50.68340	negative	MGI_C57BL6J_5610689	Gm37461	ENSEMBL:ENSMUSG00000104281	MGI:5610689	unclassified gene	predicted gene, 37461
3	gene	50.70690	50.71189	negative	MGI_C57BL6J_5622928	Gm40043	NCBI_Gene:105244435	MGI:5622928	lncRNA gene	predicted gene, 40043
3	gene	50.83858	50.83872	negative	MGI_C57BL6J_5454280	Gm24503	ENSEMBL:ENSMUSG00000089079	MGI:5454280	snoRNA gene	predicted gene, 24503
3	gene	50.88324	50.88889	negative	MGI_C57BL6J_5610776	Gm37548	NCBI_Gene:105244436,ENSEMBL:ENSMUSG00000103012	MGI:5610776	lncRNA gene	predicted gene, 37548
3	gene	50.91889	50.92153	negative	MGI_C57BL6J_5611071	Gm37843	ENSEMBL:ENSMUSG00000102614	MGI:5611071	unclassified gene	predicted gene, 37843
3	gene	50.96656	50.96677	positive	MGI_C57BL6J_2139603	AA672641	NA	NA	unclassified gene	expressed sequence AA672641
3	gene	50.97754	50.97881	negative	MGI_C57BL6J_5610437	Gm37209	ENSEMBL:ENSMUSG00000103652	MGI:5610437	unclassified gene	predicted gene, 37209
3	gene	51.03335	51.04284	negative	MGI_C57BL6J_5594915	Gm35756	NCBI_Gene:102639442	MGI:5594915	lncRNA gene	predicted gene, 35756
3	gene	51.05891	51.08934	negative	MGI_C57BL6J_5579936	Gm29230	NCBI_Gene:102639521,ENSEMBL:ENSMUSG00000102067	MGI:5579936	lncRNA gene	predicted gene 29230
3	gene	51.10366	51.10517	positive	MGI_C57BL6J_5611474	Gm38246	ENSEMBL:ENSMUSG00000103464	MGI:5611474	lncRNA gene	predicted gene, 38246
3	gene	51.12669	51.12894	negative	MGI_C57BL6J_5595050	Gm35891	NCBI_Gene:102639626	MGI:5595050	lncRNA gene	predicted gene, 35891
3	gene	51.21847	51.22033	negative	MGI_C57BL6J_5622929	Gm40044	NCBI_Gene:105244437	MGI:5622929	lncRNA gene	predicted gene, 40044
3	gene	51.22445	51.25165	positive	MGI_C57BL6J_109382	Noct	NCBI_Gene:12457,ENSEMBL:ENSMUSG00000023087	MGI:109382	protein coding gene	nocturnin
3	gene	51.23192	51.23438	positive	MGI_C57BL6J_5611585	Gm38357	ENSEMBL:ENSMUSG00000103313	MGI:5611585	unclassified gene	predicted gene, 38357
3	gene	51.25272	51.34092	negative	MGI_C57BL6J_1916507	Elf2	NCBI_Gene:69257,ENSEMBL:ENSMUSG00000037174	MGI:1916507	protein coding gene	E74-like factor 2
3	gene	51.27676	51.27841	positive	MGI_C57BL6J_1914996	4930577N17Rik	NCBI_Gene:67746,ENSEMBL:ENSMUSG00000087440	MGI:1914996	lncRNA gene	RIKEN cDNA 4930577N17 gene
3	gene	51.29718	51.29724	positive	MGI_C57BL6J_5454059	Gm24282	ENSEMBL:ENSMUSG00000077420	MGI:5454059	miRNA gene	predicted gene, 24282
3	gene	51.30249	51.30290	negative	MGI_C57BL6J_5610627	Gm37399	ENSEMBL:ENSMUSG00000104200	MGI:5610627	unclassified gene	predicted gene, 37399
3	gene	51.35835	51.35842	positive	MGI_C57BL6J_4414019	n-TPtgg7	NCBI_Gene:102467437	MGI:4414019	tRNA gene	nuclear encoded tRNA proline 7 (anticodon TGG)
3	gene	51.35941	51.35948	positive	MGI_C57BL6J_4414007	n-TPagg5	NCBI_Gene:102467366	MGI:4414007	tRNA gene	nuclear encoded tRNA proline 5 (anticodon AGG)
3	pseudogene	51.37022	51.37061	positive	MGI_C57BL6J_5610431	Gm37203	ENSEMBL:ENSMUSG00000103654	MGI:5610431	pseudogene	predicted gene, 37203
3	gene	51.37802	51.38632	positive	MGI_C57BL6J_3779459	Gm5103	NCBI_Gene:329636,ENSEMBL:ENSMUSG00000102544	MGI:3779459	lncRNA gene	predicted gene 5103
3	gene	51.38841	51.39674	negative	MGI_C57BL6J_1914999	Mgarp	NCBI_Gene:67749,ENSEMBL:ENSMUSG00000037161	MGI:1914999	protein coding gene	mitochondria localized glutamic acid rich protein
3	pseudogene	51.40246	51.40320	negative	MGI_C57BL6J_3779852	Gm9442	NCBI_Gene:669130,ENSEMBL:ENSMUSG00000104241	MGI:3779852	pseudogene	predicted gene 9442
3	gene	51.40468	51.40899	negative	MGI_C57BL6J_1913627	Ndufc1	NCBI_Gene:66377,ENSEMBL:ENSMUSG00000037152	MGI:1913627	protein coding gene	NADH:ubiquinone oxidoreductase subunit C1
3	gene	51.41515	51.47651	positive	MGI_C57BL6J_1922088	Naa15	NCBI_Gene:74838,ENSEMBL:ENSMUSG00000063273	MGI:1922088	protein coding gene	N(alpha)-acetyltransferase 15, NatA auxiliary subunit
3	gene	51.42361	51.42372	positive	MGI_C57BL6J_5610874	Gm37646	ENSEMBL:ENSMUSG00000103191	MGI:5610874	unclassified gene	predicted gene, 37646
3	gene	51.48233	51.48483	negative	MGI_C57BL6J_5611388	Gm38160	ENSEMBL:ENSMUSG00000102775	MGI:5611388	unclassified gene	predicted gene, 38160
3	gene	51.48392	51.49623	positive	MGI_C57BL6J_1330805	Rab33b	NCBI_Gene:19338,ENSEMBL:ENSMUSG00000027739	MGI:1330805	protein coding gene	RAB33B, member RAS oncogene family
3	gene	51.48962	51.49282	positive	MGI_C57BL6J_5611196	Gm37968	ENSEMBL:ENSMUSG00000102570	MGI:5611196	unclassified gene	predicted gene, 37968
3	gene	51.51099	51.51430	positive	MGI_C57BL6J_5595167	Gm36008	NCBI_Gene:102639777	MGI:5595167	lncRNA gene	predicted gene, 36008
3	gene	51.51532	51.56088	negative	MGI_C57BL6J_1920501	Setd7	NCBI_Gene:73251,ENSEMBL:ENSMUSG00000037111	MGI:1920501	protein coding gene	SET domain containing (lysine methyltransferase) 7
3	gene	51.55754	51.55965	negative	MGI_C57BL6J_5611428	Gm38200	ENSEMBL:ENSMUSG00000102466	MGI:5611428	unclassified gene	predicted gene, 38200
3	gene	51.55976	51.56712	positive	MGI_C57BL6J_1923230	5031434O11Rik	NCBI_Gene:100039684,ENSEMBL:ENSMUSG00000097885	MGI:1923230	lncRNA gene	RIKEN cDNA 5031434O11 gene
3	pseudogene	51.57111	51.57142	negative	MGI_C57BL6J_5611562	Gm38334	ENSEMBL:ENSMUSG00000104001	MGI:5611562	pseudogene	predicted gene, 38334
3	gene	51.58231	51.58285	positive	MGI_C57BL6J_1918620	5430433H01Rik	ENSEMBL:ENSMUSG00000104075	MGI:1918620	unclassified gene	RIKEN cDNA 5430433H01 gene
3	pseudogene	51.63649	51.63705	negative	MGI_C57BL6J_5611475	Gm38247	NCBI_Gene:108168852,ENSEMBL:ENSMUSG00000104166	MGI:5611475	pseudogene	predicted gene, 38247
3	gene	51.66036	51.68268	positive	MGI_C57BL6J_2448481	Mgst2	NCBI_Gene:211666,ENSEMBL:ENSMUSG00000074604	MGI:2448481	protein coding gene	microsomal glutathione S-transferase 2
3	gene	51.67280	51.67390	positive	MGI_C57BL6J_5610489	Gm37261	ENSEMBL:ENSMUSG00000103527	MGI:5610489	unclassified gene	predicted gene, 37261
3	gene	51.68591	52.10509	negative	MGI_C57BL6J_2389461	Maml3	NCBI_Gene:433586,ENSEMBL:ENSMUSG00000061143	MGI:2389461	protein coding gene	mastermind like transcriptional coactivator 3
3	gene	51.69372	51.69509	positive	MGI_C57BL6J_3642905	Gm10729	ENSEMBL:ENSMUSG00000074603	MGI:3642905	protein coding gene	predicted gene 10729
3	gene	51.70772	51.71225	positive	MGI_C57BL6J_5826440	Gm46803	NCBI_Gene:108168869	MGI:5826440	lncRNA gene	predicted gene, 46803
3	gene	51.75712	51.76209	negative	MGI_C57BL6J_5610570	Gm37342	ENSEMBL:ENSMUSG00000102732	MGI:5610570	unclassified gene	predicted gene, 37342
3	gene	51.81295	51.81931	positive	MGI_C57BL6J_5610457	Gm37229	ENSEMBL:ENSMUSG00000102539	MGI:5610457	lncRNA gene	predicted gene, 37229
3	gene	51.82891	51.82903	positive	MGI_C57BL6J_4422061	n-R5s196	ENSEMBL:ENSMUSG00000065070	MGI:4422061	rRNA gene	nuclear encoded rRNA 5S 196
3	gene	51.82939	51.83040	negative	MGI_C57BL6J_1920491	3110080O07Rik	ENSEMBL:ENSMUSG00000103284	MGI:1920491	unclassified gene	RIKEN cDNA 3110080O07 gene
3	gene	51.86735	51.86856	negative	MGI_C57BL6J_5611228	Gm38000	ENSEMBL:ENSMUSG00000103484	MGI:5611228	unclassified gene	predicted gene, 38000
3	gene	51.87299	51.87584	negative	MGI_C57BL6J_5610903	Gm37675	ENSEMBL:ENSMUSG00000102620	MGI:5610903	unclassified gene	predicted gene, 37675
3	gene	51.88428	51.88689	negative	MGI_C57BL6J_5611480	Gm38252	ENSEMBL:ENSMUSG00000102786	MGI:5611480	unclassified gene	predicted gene, 38252
3	pseudogene	51.90699	51.90882	negative	MGI_C57BL6J_3708672	Gm10728	ENSEMBL:ENSMUSG00000103701	MGI:3708672	pseudogene	predicted gene 10728
3	gene	51.98094	51.99007	positive	MGI_C57BL6J_5012274	Gm20089	ENSEMBL:ENSMUSG00000104161	MGI:5012274	lncRNA gene	predicted gene, 20089
3	gene	51.98763	51.98985	negative	MGI_C57BL6J_5611283	Gm38055	ENSEMBL:ENSMUSG00000102147	MGI:5611283	unclassified gene	predicted gene, 38055
3	gene	51.99134	51.99196	negative	MGI_C57BL6J_5610754	Gm37526	ENSEMBL:ENSMUSG00000103784	MGI:5610754	unclassified gene	predicted gene, 37526
3	gene	52.00074	52.00402	negative	MGI_C57BL6J_5610693	Gm37465	ENSEMBL:ENSMUSG00000102423	MGI:5610693	unclassified gene	predicted gene, 37465
3	gene	52.05729	52.06424	negative	MGI_C57BL6J_2444420	C130089K02Rik	ENSEMBL:ENSMUSG00000104339	MGI:2444420	unclassified gene	RIKEN cDNA C130089K02 gene
3	gene	52.07159	52.07339	negative	MGI_C57BL6J_1921741	5430420F09Rik	ENSEMBL:ENSMUSG00000102808	MGI:1921741	unclassified gene	RIKEN cDNA 5430420F09 gene
3	gene	52.13405	52.22200	negative	MGI_C57BL6J_5610430	Gm37202	ENSEMBL:ENSMUSG00000103655	MGI:5610430	lncRNA gene	predicted gene, 37202
3	gene	52.17108	52.18013	negative	MGI_C57BL6J_5589233	Gm30074	NCBI_Gene:102631843,ENSEMBL:ENSMUSG00000103726	MGI:5589233	lncRNA gene	predicted gene, 30074
3	gene	52.18657	52.18796	positive	MGI_C57BL6J_5611360	Gm38132	ENSEMBL:ENSMUSG00000104055	MGI:5611360	lncRNA gene	predicted gene, 38132
3	gene	52.19825	52.20049	positive	MGI_C57BL6J_5610398	Gm37170	ENSEMBL:ENSMUSG00000103170	MGI:5610398	lncRNA gene	predicted gene, 37170
3	pseudogene	52.23684	52.24694	negative	MGI_C57BL6J_3031232	Olfr1398-ps1	NCBI_Gene:404507,ENSEMBL:ENSMUSG00000102510	MGI:3031232	pseudogene	olfactory receptor 1398, pseudogene 1
3	gene	52.23745	52.25650	positive	MGI_C57BL6J_5589284	Gm30125	NCBI_Gene:102631910	MGI:5589284	lncRNA gene	predicted gene, 30125
3	gene	52.26834	52.35322	positive	MGI_C57BL6J_1890077	Foxo1	NCBI_Gene:56458,ENSEMBL:ENSMUSG00000044167	MGI:1890077	protein coding gene	forkhead box O1
3	gene	52.26843	52.26944	negative	MGI_C57BL6J_5141867	Gm20402	ENSEMBL:ENSMUSG00000092405	MGI:5141867	lncRNA gene	predicted gene 20402
3	gene	52.28224	52.28431	positive	MGI_C57BL6J_5611262	Gm38034	ENSEMBL:ENSMUSG00000102844	MGI:5611262	unclassified gene	predicted gene, 38034
3	pseudogene	52.42535	52.42573	positive	MGI_C57BL6J_5593462	Gm34303	NCBI_Gene:102637513	MGI:5593462	pseudogene	predicted gene, 34303
3	pseudogene	52.42541	52.42565	positive	MGI_C57BL6J_5611326	Gm38098	ENSEMBL:ENSMUSG00000103454	MGI:5611326	pseudogene	predicted gene, 38098
3	gene	52.46717	52.49327	positive	MGI_C57BL6J_5621422	Gm38537	NCBI_Gene:102641152	MGI:5621422	lncRNA gene	predicted gene, 38537
3	gene	52.50277	52.55022	positive	MGI_C57BL6J_5589332	Gm30173	NCBI_Gene:102631981,ENSEMBL:ENSMUSG00000103965	MGI:5589332	lncRNA gene	predicted gene, 30173
3	gene	52.58013	52.58907	positive	MGI_C57BL6J_5622932	Gm40047	NCBI_Gene:105244440	MGI:5622932	lncRNA gene	predicted gene, 40047
3	pseudogene	52.61282	52.61402	positive	MGI_C57BL6J_3704216	Gm10293	NCBI_Gene:100039762,ENSEMBL:ENSMUSG00000070490	MGI:3704216	pseudogene	predicted pseudogene 10293
3	gene	52.64989	52.70971	positive	MGI_C57BL6J_5589394	Gm30235	NCBI_Gene:102632062	MGI:5589394	lncRNA gene	predicted gene, 30235
3	gene	52.72265	52.72275	negative	MGI_C57BL6J_5452575	Gm22798	ENSEMBL:ENSMUSG00000065926	MGI:5452575	snRNA gene	predicted gene, 22798
3	gene	52.73972	52.77666	positive	MGI_C57BL6J_3780614	Gm2447	NCBI_Gene:329639,ENSEMBL:ENSMUSG00000102785	MGI:3780614	lncRNA gene	predicted gene 2447
3	gene	52.78900	52.79781	negative	MGI_C57BL6J_5589451	Gm30292	NCBI_Gene:102632139,ENSEMBL:ENSMUSG00000104109	MGI:5589451	lncRNA gene	predicted gene, 30292
3	gene	52.90676	52.92767	negative	MGI_C57BL6J_5434106	Gm20750	NCBI_Gene:622124,ENSEMBL:ENSMUSG00000104401	MGI:5434106	lncRNA gene	predicted gene, 20750
3	gene	52.93325	52.95628	positive	MGI_C57BL6J_5589510	Gm30351	NCBI_Gene:102632211	MGI:5589510	lncRNA gene	predicted gene, 30351
3	gene	52.95618	52.95789	negative	MGI_C57BL6J_5589561	Gm30402	NCBI_Gene:102632287	MGI:5589561	lncRNA gene	predicted gene, 30402
3	pseudogene	52.96005	52.96037	negative	MGI_C57BL6J_5610235	Gm37007	ENSEMBL:ENSMUSG00000103886	MGI:5610235	pseudogene	predicted gene, 37007
3	gene	52.98188	53.01724	negative	MGI_C57BL6J_1914792	Cog6	NCBI_Gene:67542,ENSEMBL:ENSMUSG00000027742	MGI:1914792	protein coding gene	component of oligomeric golgi complex 6
3	gene	53.03858	53.04176	negative	MGI_C57BL6J_5663038	Gm42901	ENSEMBL:ENSMUSG00000104850	MGI:5663038	lncRNA gene	predicted gene 42901
3	gene	53.04153	53.26168	positive	MGI_C57BL6J_1920048	Lhfp	NCBI_Gene:108927,ENSEMBL:ENSMUSG00000048332	MGI:1920048	protein coding gene	lipoma HMGIC fusion partner
3	gene	53.07216	53.07524	negative	MGI_C57BL6J_5663035	Gm42898	ENSEMBL:ENSMUSG00000104828	MGI:5663035	unclassified gene	predicted gene 42898
3	gene	53.08322	53.08588	positive	MGI_C57BL6J_5663036	Gm42899	ENSEMBL:ENSMUSG00000104687	MGI:5663036	unclassified gene	predicted gene 42899
3	gene	53.09900	53.10318	positive	MGI_C57BL6J_2443940	C130075A20Rik	ENSEMBL:ENSMUSG00000104735	MGI:2443940	unclassified gene	RIKEN cDNA C130075A20 gene
3	gene	53.10967	53.11012	positive	MGI_C57BL6J_5663941	Gm43804	ENSEMBL:ENSMUSG00000104615	MGI:5663941	unclassified gene	predicted gene 43804
3	gene	53.11040	53.11341	negative	MGI_C57BL6J_5663940	Gm43803	ENSEMBL:ENSMUSG00000104968	MGI:5663940	lncRNA gene	predicted gene 43803
3	gene	53.11217	53.11299	positive	MGI_C57BL6J_5663942	Gm43805	ENSEMBL:ENSMUSG00000105971	MGI:5663942	unclassified gene	predicted gene 43805
3	pseudogene	53.34649	53.34723	negative	MGI_C57BL6J_5663609	Gm43472	ENSEMBL:ENSMUSG00000106660	MGI:5663609	pseudogene	predicted gene 43472
3	gene	53.39575	53.39850	positive	MGI_C57BL6J_5622933	Gm40048	NCBI_Gene:105244441	MGI:5622933	lncRNA gene	predicted gene, 40048
3	pseudogene	53.40161	53.42457	negative	MGI_C57BL6J_5663608	Gm43471	NCBI_Gene:108168853,ENSEMBL:ENSMUSG00000105397	MGI:5663608	pseudogene	predicted gene 43471
3	gene	53.44858	53.46333	negative	MGI_C57BL6J_2444520	Nhlrc3	NCBI_Gene:212114,ENSEMBL:ENSMUSG00000042997	MGI:2444520	protein coding gene	NHL repeat containing 3
3	gene	53.45262	53.45805	positive	MGI_C57BL6J_3801870	Gm16206	NCBI_Gene:102632669,ENSEMBL:ENSMUSG00000085174	MGI:3801870	lncRNA gene	predicted gene 16206
3	gene	53.46367	53.48175	positive	MGI_C57BL6J_1919933	Proser1	NCBI_Gene:212127,ENSEMBL:ENSMUSG00000049504	MGI:1919933	protein coding gene	proline and serine rich 1
3	gene	53.48865	53.50850	positive	MGI_C57BL6J_2388072	Stoml3	NCBI_Gene:229277,ENSEMBL:ENSMUSG00000027744	MGI:2388072	protein coding gene	stomatin (Epb7.2)-like 3
3	gene	53.50893	53.51010	positive	MGI_C57BL6J_1924132	6430500D05Rik	ENSEMBL:ENSMUSG00000105481	MGI:1924132	unclassified gene	RIKEN cDNA 6430500D05 gene
3	gene	53.51200	53.51213	positive	MGI_C57BL6J_5453452	Gm23675	ENSEMBL:ENSMUSG00000087936	MGI:5453452	snoRNA gene	predicted gene, 23675
3	gene	53.51394	53.65736	negative	MGI_C57BL6J_2444465	Frem2	NCBI_Gene:242022,ENSEMBL:ENSMUSG00000037016	MGI:2444465	protein coding gene	Fras1 related extracellular matrix protein 2
3	pseudogene	53.66666	53.66739	negative	MGI_C57BL6J_3648425	Gm6073	NCBI_Gene:606547,ENSEMBL:ENSMUSG00000105840	MGI:3648425	pseudogene	predicted gene 6073
3	pseudogene	53.69237	53.69292	negative	MGI_C57BL6J_3649038	Gm6204	NCBI_Gene:621155,ENSEMBL:ENSMUSG00000105879	MGI:3649038	pseudogene	predicted gene 6204
3	gene	53.70304	53.73576	positive	MGI_C57BL6J_5589894	Gm30735	NCBI_Gene:102632743,ENSEMBL:ENSMUSG00000105168	MGI:5589894	lncRNA gene	predicted gene, 30735
3	gene	53.73622	53.73783	positive	MGI_C57BL6J_3642187	Gm10727	ENSEMBL:ENSMUSG00000105444	MGI:3642187	unclassified gene	predicted gene 10727
3	gene	53.75673	53.77295	positive	MGI_C57BL6J_2443105	C820005J03Rik	ENSEMBL:ENSMUSG00000106270	MGI:2443105	lncRNA gene	RIKEN cDNA C820005J03 gene
3	gene	53.84341	53.84351	positive	MGI_C57BL6J_5454628	Gm24851	ENSEMBL:ENSMUSG00000088653	MGI:5454628	snRNA gene	predicted gene, 24851
3	gene	53.84509	53.84528	positive	MGI_C57BL6J_3779200	Gm10985	ENSEMBL:ENSMUSG00000078742	MGI:3779200	protein coding gene	predicted gene 10985
3	gene	53.85338	53.86383	negative	MGI_C57BL6J_1915140	Ufm1	NCBI_Gene:67890,ENSEMBL:ENSMUSG00000027746	MGI:1915140	protein coding gene	ubiquitin-fold modifier 1
3	gene	53.92484	53.94353	positive	MGI_C57BL6J_5590185	Gm31026	NCBI_Gene:102633119,ENSEMBL:ENSMUSG00000106577	MGI:5590185	lncRNA gene	predicted gene, 31026
3	pseudogene	54.02115	54.02195	positive	MGI_C57BL6J_3645533	Gm8109	NCBI_Gene:666444,ENSEMBL:ENSMUSG00000103155	MGI:3645533	pseudogene	predicted gene 8109
3	pseudogene	54.02988	54.03041	positive	MGI_C57BL6J_5010203	Gm18018	NCBI_Gene:100416282,ENSEMBL:ENSMUSG00000105067	MGI:5010203	pseudogene	predicted gene, 18018
3	gene	54.15604	54.31847	positive	MGI_C57BL6J_109525	Trpc4	NCBI_Gene:22066,ENSEMBL:ENSMUSG00000027748	MGI:109525	protein coding gene	transient receptor potential cation channel, subfamily C, member 4
3	gene	54.35927	54.39104	positive	MGI_C57BL6J_1926321	Postn	NCBI_Gene:50706,ENSEMBL:ENSMUSG00000027750	MGI:1926321	protein coding gene	periostin, osteoblast specific factor
3	gene	54.35966	54.36101	negative	MGI_C57BL6J_5590254	Gm31095	NCBI_Gene:102633208	MGI:5590254	lncRNA gene	predicted gene, 31095
3	pseudogene	54.48141	54.48293	positive	MGI_C57BL6J_3645731	Gm5641	NCBI_Gene:434807,ENSEMBL:ENSMUSG00000069014	MGI:3645731	pseudogene	predicted gene 5641
3	gene	54.48856	54.53489	negative	MGI_C57BL6J_5590313	Gm31154	NCBI_Gene:102633293	MGI:5590313	lncRNA gene	predicted gene, 31154
3	gene	54.59055	54.60139	negative	MGI_C57BL6J_5622935	Gm40050	NCBI_Gene:105244443	MGI:5622935	lncRNA gene	predicted gene, 40050
3	gene	54.63144	54.63463	positive	MGI_C57BL6J_5477172	Gm26678	ENSEMBL:ENSMUSG00000097599	MGI:5477172	lncRNA gene	predicted gene, 26678
3	pseudogene	54.63288	54.63457	negative	MGI_C57BL6J_3588285	B020017C02Rik	NCBI_Gene:100503708,ENSEMBL:ENSMUSG00000104831	MGI:3588285	pseudogene	RIKEN cDNA B020017C02 gene
3	gene	54.69276	54.72877	positive	MGI_C57BL6J_1929651	Supt20	NCBI_Gene:56790,ENSEMBL:ENSMUSG00000027751	MGI:1929651	protein coding gene	SPT20 SAGA complex component
3	gene	54.71318	54.71435	negative	MGI_C57BL6J_5439427	Gm21958	ENSEMBL:ENSMUSG00000094487	MGI:5439427	protein coding gene	predicted gene, 21958
3	gene	54.72868	54.73539	negative	MGI_C57BL6J_1916889	Exosc8	NCBI_Gene:69639,ENSEMBL:ENSMUSG00000027752	MGI:1916889	protein coding gene	exosome component 8
3	gene	54.73554	54.75132	positive	MGI_C57BL6J_1913498	Alg5	NCBI_Gene:66248,ENSEMBL:ENSMUSG00000036632	MGI:1913498	protein coding gene	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)
3	gene	54.75545	54.80166	positive	MGI_C57BL6J_1859993	Smad9	NCBI_Gene:55994,ENSEMBL:ENSMUSG00000027796	MGI:1859993	protein coding gene	SMAD family member 9
3	gene	54.80311	54.80779	negative	MGI_C57BL6J_2180854	Rfxap	NCBI_Gene:170767,ENSEMBL:ENSMUSG00000036615	MGI:2180854	protein coding gene	regulatory factor X-associated protein
3	pseudogene	54.80997	54.81140	negative	MGI_C57BL6J_3708673	Gm10254	NCBI_Gene:545524,ENSEMBL:ENSMUSG00000069011	MGI:3708673	pseudogene	predicted gene 10254
3	gene	54.89707	54.91589	negative	MGI_C57BL6J_3607715	Sertm1	NCBI_Gene:329641,ENSEMBL:ENSMUSG00000056306	MGI:3607715	protein coding gene	serine rich and transmembrane domain containing 1
3	gene	54.91602	54.95326	positive	MGI_C57BL6J_5590517	Gm31358	NCBI_Gene:102633562	MGI:5590517	lncRNA gene	predicted gene, 31358
3	gene	55.04547	55.05550	negative	MGI_C57BL6J_108042	Ccna1	NCBI_Gene:12427,ENSEMBL:ENSMUSG00000027793	MGI:108042	protein coding gene	cyclin A1
3	gene	55.05524	55.08400	positive	MGI_C57BL6J_1918220	4931419H13Rik	NCBI_Gene:70970,ENSEMBL:ENSMUSG00000106589	MGI:1918220	lncRNA gene	RIKEN cDNA 4931419H13 gene
3	pseudogene	55.05735	55.05766	negative	MGI_C57BL6J_5663692	Gm43555	ENSEMBL:ENSMUSG00000105977	MGI:5663692	pseudogene	predicted gene 43555
3	gene	55.11207	55.13733	positive	MGI_C57BL6J_2139806	Spg20	NCBI_Gene:229285,ENSEMBL:ENSMUSG00000036580	MGI:2139806	protein coding gene	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
3	gene	55.13734	55.17525	positive	MGI_C57BL6J_2444356	Ccdc169	NCBI_Gene:320604,ENSEMBL:ENSMUSG00000048655	MGI:2444356	protein coding gene	coiled-coil domain containing 169
3	gene	55.16231	55.16243	negative	MGI_C57BL6J_5451806	Gm22029	ENSEMBL:ENSMUSG00000080590	MGI:5451806	miRNA gene	predicted gene, 22029
3	gene	55.18203	55.20996	positive	MGI_C57BL6J_1921684	Sohlh2	NCBI_Gene:74434,ENSEMBL:ENSMUSG00000027794	MGI:1921684	protein coding gene	spermatogenesis and oogenesis specific basic helix-loop-helix 2
3	gene	55.24236	55.53907	positive	MGI_C57BL6J_1330861	Dclk1	NCBI_Gene:13175,ENSEMBL:ENSMUSG00000027797	MGI:1330861	protein coding gene	doublecortin-like kinase 1
3	gene	55.29094	55.29194	positive	MGI_C57BL6J_1924494	9430012M22Rik	NA	NA	unclassified gene	RIKEN cDNA 9430012M22 gene
3	gene	55.30532	55.30542	positive	MGI_C57BL6J_5454909	Gm25132	ENSEMBL:ENSMUSG00000064586	MGI:5454909	snRNA gene	predicted gene, 25132
3	gene	55.33084	55.33297	positive	MGI_C57BL6J_5012002	Gm19817	ENSEMBL:ENSMUSG00000105302	MGI:5012002	unclassified gene	predicted gene, 19817
3	gene	55.35240	55.38079	negative	MGI_C57BL6J_5622936	Gm40051	NCBI_Gene:105244444	MGI:5622936	lncRNA gene	predicted gene, 40051
3	gene	55.37746	55.40312	negative	MGI_C57BL6J_5662746	Gm42609	ENSEMBL:ENSMUSG00000105975	MGI:5662746	lncRNA gene	predicted gene 42609
3	gene	55.39181	55.40420	negative	MGI_C57BL6J_3642047	Gm9831	NCBI_Gene:101056032	MGI:3642047	protein coding gene	predicted gene 9831
3	gene	55.46198	55.47221	negative	MGI_C57BL6J_5439423	Gm21954	ENSEMBL:ENSMUSG00000094962	MGI:5439423	protein coding gene	predicted gene, 21954
3	gene	55.47609	55.48162	negative	MGI_C57BL6J_5590602	Gm31443	NCBI_Gene:102633676	MGI:5590602	lncRNA gene	predicted gene, 31443
3	gene	55.48379	55.48718	positive	MGI_C57BL6J_5662744	Gm42607	ENSEMBL:ENSMUSG00000106354	MGI:5662744	unclassified gene	predicted gene 42607
3	gene	55.51757	55.51959	positive	MGI_C57BL6J_5662745	Gm42608	ENSEMBL:ENSMUSG00000106651	MGI:5662745	unclassified gene	predicted gene 42608
3	gene	55.54045	55.54338	negative	MGI_C57BL6J_5590955	Gm31796	NCBI_Gene:102634140	MGI:5590955	lncRNA gene	predicted gene, 31796
3	gene	55.54354	55.54855	positive	MGI_C57BL6J_5455181	Gm25404	NCBI_Gene:102634218,ENSEMBL:ENSMUSG00000064904	MGI:5455181	snRNA gene	predicted gene, 25404
3	gene	55.57492	55.57727	positive	MGI_C57BL6J_5663685	Gm43548	ENSEMBL:ENSMUSG00000105627	MGI:5663685	unclassified gene	predicted gene 43548
3	gene	55.57811	55.58273	negative	MGI_C57BL6J_5663686	Gm43549	NCBI_Gene:108168870,ENSEMBL:ENSMUSG00000106334	MGI:5663686	lncRNA gene	predicted gene 43549
3	gene	55.62519	56.18427	negative	MGI_C57BL6J_1347075	Nbea	NCBI_Gene:26422,ENSEMBL:ENSMUSG00000027799	MGI:1347075	protein coding gene	neurobeachin
3	gene	55.70589	55.71565	positive	MGI_C57BL6J_5826441	Gm46804	NCBI_Gene:108168871	MGI:5826441	lncRNA gene	predicted gene, 46804
3	gene	55.72593	55.72844	negative	MGI_C57BL6J_3609650	D430004P15Rik	NA	NA	unclassified gene	Riken cDNA D430004P15 gene
3	gene	55.77534	55.78795	negative	MGI_C57BL6J_3698047	9630024C22Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 9630024C22 gene
3	gene	55.78251	55.78529	positive	MGI_C57BL6J_1333773	Mab21l1	NCBI_Gene:17116,ENSEMBL:ENSMUSG00000056947	MGI:1333773	protein coding gene	mab-21-like 1
3	gene	55.83367	55.83446	negative	MGI_C57BL6J_1924979	6720451E02Rik	NA	NA	unclassified gene	RIKEN cDNA 6720451E02 gene
3	pseudogene	55.84710	55.84840	positive	MGI_C57BL6J_1918432	4933417G07Rik	NCBI_Gene:71182,ENSEMBL:ENSMUSG00000106572	MGI:1918432	pseudogene	RIKEN cDNA 4933417G07 gene
3	gene	55.85525	55.85615	negative	MGI_C57BL6J_1926125	B230206L23Rik	NA	NA	unclassified gene	RIKEN cDNA B230206L23 gene
3	gene	55.88327	56.00032	positive	MGI_C57BL6J_5591073	Gm31914	NCBI_Gene:102634293	MGI:5591073	lncRNA gene	predicted gene, 31914
3	gene	55.89031	55.93670	positive	MGI_C57BL6J_5663513	Gm43376	ENSEMBL:ENSMUSG00000104677	MGI:5663513	lncRNA gene	predicted gene 43376
3	gene	55.95678	55.95691	negative	MGI_C57BL6J_5452561	Gm22784	ENSEMBL:ENSMUSG00000077276	MGI:5452561	snoRNA gene	predicted gene, 22784
3	gene	56.01492	56.01717	negative	MGI_C57BL6J_5662977	Gm42840	ENSEMBL:ENSMUSG00000104938	MGI:5662977	unclassified gene	predicted gene 42840
3	gene	56.12316	56.12616	negative	MGI_C57BL6J_5662979	Gm42842	ENSEMBL:ENSMUSG00000106211	MGI:5662979	unclassified gene	predicted gene 42842
3	gene	56.12860	56.13053	negative	MGI_C57BL6J_5662978	Gm42841	ENSEMBL:ENSMUSG00000106528	MGI:5662978	unclassified gene	predicted gene 42841
3	gene	56.16395	56.16757	negative	MGI_C57BL6J_5662980	Gm42843	ENSEMBL:ENSMUSG00000105293	MGI:5662980	unclassified gene	predicted gene 42843
3	gene	56.21791	56.22124	negative	MGI_C57BL6J_5622937	Gm40052	NCBI_Gene:105244445	MGI:5622937	lncRNA gene	predicted gene, 40052
3	gene	56.25590	56.26994	negative	MGI_C57BL6J_5622938	Gm40053	NCBI_Gene:105244446	MGI:5622938	lncRNA gene	predicted gene, 40053
3	gene	56.34703	56.35755	negative	MGI_C57BL6J_5622939	Gm40054	NCBI_Gene:105244447	MGI:5622939	lncRNA gene	predicted gene, 40054
3	gene	56.35224	56.35230	positive	MGI_C57BL6J_102792	Mcptl	NA	NA	protein coding gene	mast cell protease-like
3	gene	56.43600	56.43875	negative	MGI_C57BL6J_5591336	Gm32177	NCBI_Gene:102634641	MGI:5591336	lncRNA gene	predicted gene, 32177
3	gene	56.44528	56.44541	negative	MGI_C57BL6J_5455504	Gm25727	ENSEMBL:ENSMUSG00000077710	MGI:5455504	snoRNA gene	predicted gene, 25727
3	gene	56.69842	56.70506	positive	MGI_C57BL6J_5591396	Gm32237	NCBI_Gene:102634719	MGI:5591396	lncRNA gene	predicted gene, 32237
3	pseudogene	56.82832	56.82884	negative	MGI_C57BL6J_3780790	Gm2622	NCBI_Gene:100040139,ENSEMBL:ENSMUSG00000105113	MGI:3780790	pseudogene	predicted gene 2622
3	gene	56.88806	56.89133	negative	MGI_C57BL6J_3588185	F830104G03Rik	NA	NA	unclassified gene	RIKEN cDNA F830104G03 gene
3	gene	57.05415	57.05428	positive	MGI_C57BL6J_5452046	Gm22269	ENSEMBL:ENSMUSG00000077190	MGI:5452046	snoRNA gene	predicted gene, 22269
3	pseudogene	57.13549	57.13683	negative	MGI_C57BL6J_3805962	Gm8177	NCBI_Gene:666585,ENSEMBL:ENSMUSG00000097366	MGI:3805962	pseudogene	predicted gene 8177
3	gene	57.22772	57.22918	negative	MGI_C57BL6J_1918389	4933408K01Rik	NA	NA	unclassified gene	RIKEN cDNA 4933408K01 gene
3	pseudogene	57.24925	57.24950	positive	MGI_C57BL6J_5663561	Gm43424	ENSEMBL:ENSMUSG00000106286	MGI:5663561	pseudogene	predicted gene 43424
3	pseudogene	57.27174	57.27237	negative	MGI_C57BL6J_5010845	Gm18660	NCBI_Gene:100417512,ENSEMBL:ENSMUSG00000104534	MGI:5010845	pseudogene	predicted gene, 18660
3	gene	57.28561	57.30199	negative	MGI_C57BL6J_104678	Tm4sf1	NCBI_Gene:17112,ENSEMBL:ENSMUSG00000027800	MGI:104678	protein coding gene	transmembrane 4 superfamily member 1
3	pseudogene	57.36225	57.36361	positive	MGI_C57BL6J_3646382	Gm5276	NCBI_Gene:383862,ENSEMBL:ENSMUSG00000105452	MGI:3646382	pseudogene	predicted gene 5276
3	gene	57.37929	57.39455	negative	MGI_C57BL6J_5591526	Gm32367	NCBI_Gene:102634892	MGI:5591526	lncRNA gene	predicted gene, 32367
3	gene	57.42531	57.44168	positive	MGI_C57BL6J_2385173	Tm4sf4	NCBI_Gene:229302,ENSEMBL:ENSMUSG00000027801	MGI:2385173	protein coding gene	transmembrane 4 superfamily member 4
3	gene	57.45564	57.57591	negative	MGI_C57BL6J_1917649	Wwtr1	NCBI_Gene:97064,ENSEMBL:ENSMUSG00000027803	MGI:1917649	protein coding gene	WW domain containing transcription regulator 1
3	pseudogene	57.52655	57.53048	positive	MGI_C57BL6J_3802068	Gm16016	NCBI_Gene:105244448,ENSEMBL:ENSMUSG00000083538	MGI:3802068	pseudogene	predicted gene 16016
3	gene	57.61259	57.62736	negative	MGI_C57BL6J_5477165	Gm26671	NCBI_Gene:102635136,ENSEMBL:ENSMUSG00000097339	MGI:5477165	lncRNA gene	predicted gene, 26671
3	gene	57.61661	57.61672	positive	MGI_C57BL6J_5530798	Mir6377	miRBase:MI0021907,NCBI_Gene:102465197,ENSEMBL:ENSMUSG00000098401	MGI:5530798	miRNA gene	microRNA 6377
3	gene	57.63688	57.64084	negative	MGI_C57BL6J_5663574	Gm43437	ENSEMBL:ENSMUSG00000104965	MGI:5663574	unclassified gene	predicted gene 43437
3	gene	57.63768	57.64073	positive	MGI_C57BL6J_5826442	Gm46805	NCBI_Gene:108168872	MGI:5826442	lncRNA gene	predicted gene, 46805
3	gene	57.64435	57.65172	negative	MGI_C57BL6J_1098806	Commd2	NCBI_Gene:52245,ENSEMBL:ENSMUSG00000036513	MGI:1098806	protein coding gene	COMM domain containing 2
3	gene	57.65440	57.65558	negative	MGI_C57BL6J_2140033	BB187690	ENSEMBL:ENSMUSG00000105389	MGI:2140033	unclassified gene	expressed sequence BB187690
3	gene	57.65739	57.69280	negative	MGI_C57BL6J_2685256	Ankub1	NCBI_Gene:242037,ENSEMBL:ENSMUSG00000074591	MGI:2685256	protein coding gene	ankrin repeat and ubiquitin domain containing 1
3	gene	57.69618	57.69748	negative	MGI_C57BL6J_5663235	Gm43098	ENSEMBL:ENSMUSG00000106635	MGI:5663235	unclassified gene	predicted gene 43098
3	pseudogene	57.71777	57.71832	negative	MGI_C57BL6J_3648319	Gm6394	NCBI_Gene:623114,ENSEMBL:ENSMUSG00000104623	MGI:3648319	pseudogene	predicted gene 6394
3	gene	57.73604	57.83543	positive	MGI_C57BL6J_1346341	Rnf13	NCBI_Gene:24017,ENSEMBL:ENSMUSG00000036503	MGI:1346341	protein coding gene	ring finger protein 13
3	pseudogene	57.76582	57.76667	negative	MGI_C57BL6J_3780052	Gm9645	NCBI_Gene:675537,ENSEMBL:ENSMUSG00000106421	MGI:3780052	pseudogene	predicted gene 9645
3	pseudogene	57.80976	57.81027	negative	MGI_C57BL6J_5010136	Gm17951	NCBI_Gene:100416165,ENSEMBL:ENSMUSG00000106006	MGI:5010136	pseudogene	predicted gene, 17951
3	gene	57.82159	57.82240	positive	MGI_C57BL6J_1925970	D530035G10Rik	NA	NA	unclassified gene	RIKEN cDNA D530035G10 gene
3	gene	57.84190	57.84808	negative	MGI_C57BL6J_97550	Pfn2	NCBI_Gene:18645,ENSEMBL:ENSMUSG00000027805	MGI:97550	protein coding gene	profilin 2
3	gene	57.92209	57.92219	negative	MGI_C57BL6J_5454308	Gm24531	ENSEMBL:ENSMUSG00000088570	MGI:5454308	snRNA gene	predicted gene, 24531
3	pseudogene	57.94292	57.94315	positive	MGI_C57BL6J_5662648	Gm42511	ENSEMBL:ENSMUSG00000104730	MGI:5662648	pseudogene	predicted gene 42511
3	gene	57.94911	57.97883	positive	MGI_C57BL6J_5591912	Gm32753	NCBI_Gene:102635402	MGI:5591912	lncRNA gene	predicted gene, 32753
3	gene	57.95198	58.03171	negative	MGI_C57BL6J_5622940	Gm40055	NCBI_Gene:105244449,ENSEMBL:ENSMUSG00000105003	MGI:5622940	lncRNA gene	predicted gene, 40055
3	pseudogene	57.96219	57.96337	positive	MGI_C57BL6J_5011052	Gm18867	NCBI_Gene:100417858,ENSEMBL:ENSMUSG00000106246	MGI:5011052	pseudogene	predicted gene, 18867
3	gene	58.07972	58.08183	positive	MGI_C57BL6J_5662650	Gm42513	ENSEMBL:ENSMUSG00000105065	MGI:5662650	unclassified gene	predicted gene 42513
3	gene	58.08960	58.16235	positive	MGI_C57BL6J_5622941	Gm40056	NCBI_Gene:105244450	MGI:5622941	lncRNA gene	predicted gene, 40056
3	pseudogene	58.10256	58.10430	negative	MGI_C57BL6J_3643179	Gm5537	NCBI_Gene:433594,ENSEMBL:ENSMUSG00000069008	MGI:3643179	pseudogene	predicted gene 5537
3	gene	58.11705	58.16762	positive	MGI_C57BL6J_1925506	4921539H07Rik	ENSEMBL:ENSMUSG00000104586	MGI:1925506	lncRNA gene	RIKEN cDNA 4921539H07 gene
3	gene	58.14171	58.16381	negative	MGI_C57BL6J_1915100	1700007F19Rik	NCBI_Gene:67850,ENSEMBL:ENSMUSG00000100666	MGI:1915100	lncRNA gene	RIKEN cDNA 1700007F19 gene
3	gene	58.21192	58.21337	positive	MGI_C57BL6J_5622942	Gm40057	NCBI_Gene:105244451	MGI:5622942	lncRNA gene	predicted gene, 40057
3	gene	58.29025	58.29036	negative	MGI_C57BL6J_5455943	Gm26166	ENSEMBL:ENSMUSG00000065722	MGI:5455943	snRNA gene	predicted gene, 26166
3	gene	58.30186	58.31762	positive	MGI_C57BL6J_5592006	Gm32847	NCBI_Gene:102635539	MGI:5592006	lncRNA gene	predicted gene, 32847
3	pseudogene	58.31494	58.31531	negative	MGI_C57BL6J_5663867	Gm43730	ENSEMBL:ENSMUSG00000106176	MGI:5663867	pseudogene	predicted gene 43730
3	pseudogene	58.40465	58.40512	positive	MGI_C57BL6J_5012313	Gm20128	NCBI_Gene:100504238,ENSEMBL:ENSMUSG00000105154	MGI:5012313	pseudogene	predicted gene, 20128
3	gene	58.41472	58.46679	positive	MGI_C57BL6J_1919283	Tsc22d2	NCBI_Gene:72033,ENSEMBL:ENSMUSG00000027806	MGI:1919283	protein coding gene	TSC22 domain family, member 2
3	gene	58.43268	58.43301	positive	MGI_C57BL6J_1338064	Gdap9	NA	NA	unclassified gene	ganglioside-induced differentiation-associated-protein 9
3	gene	58.51982	58.52589	negative	MGI_C57BL6J_92638	Serp1	NCBI_Gene:28146,ENSEMBL:ENSMUSG00000027808	MGI:92638	protein coding gene	stress-associated endoplasmic reticulum protein 1
3	gene	58.52582	58.55750	positive	MGI_C57BL6J_1098684	Eif2a	NCBI_Gene:229317,ENSEMBL:ENSMUSG00000027810	MGI:1098684	protein coding gene	eukaryotic translation initiation factor 2A
3	gene	58.52693	58.52812	positive	MGI_C57BL6J_1925148	6720482G16Rik	ENSEMBL:ENSMUSG00000106553	MGI:1925148	unclassified gene	RIKEN cDNA 6720482G16 gene
3	gene	58.57664	58.59354	positive	MGI_C57BL6J_1916477	Selenot	NCBI_Gene:69227,ENSEMBL:ENSMUSG00000075700	MGI:1916477	protein coding gene	selenoprotein T
3	gene	58.61630	58.63721	negative	MGI_C57BL6J_3588212	Erich6	NCBI_Gene:545527,ENSEMBL:ENSMUSG00000070471	MGI:3588212	protein coding gene	glutamate rich 6
3	gene	58.63671	58.63749	positive	MGI_C57BL6J_5826443	Gm46806	NCBI_Gene:108168873	MGI:5826443	lncRNA gene	predicted gene, 46806
3	pseudogene	58.65204	58.65404	positive	MGI_C57BL6J_3779790	Gm8234	NCBI_Gene:666680,ENSEMBL:ENSMUSG00000105021	MGI:3779790	pseudogene	predicted gene 8234
3	pseudogene	58.66547	58.66664	negative	MGI_C57BL6J_2139888	AU022133	NCBI_Gene:100417266,ENSEMBL:ENSMUSG00000105336	MGI:2139888	pseudogene	expressed sequence AU022133
3	gene	58.67494	58.69244	negative	MGI_C57BL6J_108062	Siah2	NCBI_Gene:20439,ENSEMBL:ENSMUSG00000036432	MGI:108062	protein coding gene	siah E3 ubiquitin protein ligase 2
3	gene	58.69259	58.79733	positive	MGI_C57BL6J_1923132	4930593A02Rik	NCBI_Gene:71301,ENSEMBL:ENSMUSG00000097725	MGI:1923132	lncRNA gene	RIKEN cDNA 4930593A02 gene
3	gene	58.69756	58.69867	positive	MGI_C57BL6J_1925070	A930028O11Rik	ENSEMBL:ENSMUSG00000105226	MGI:1925070	unclassified gene	RIKEN cDNA A930028O11 gene
3	pseudogene	58.76149	58.76275	negative	MGI_C57BL6J_5592251	Gm33092	NCBI_Gene:102635856	MGI:5592251	pseudogene	predicted gene, 33092
3	pseudogene	58.78841	58.82231	negative	MGI_C57BL6J_2140018	Mindy4b-ps	NCBI_Gene:100040293,ENSEMBL:ENSMUSG00000101860	MGI:2140018	pseudogene	MINDY lysine 48 deubiquitinase 4B, pseudogene
3	gene	58.82499	58.83590	positive	MGI_C57BL6J_5622944	Gm40059	NCBI_Gene:105244453	MGI:5622944	lncRNA gene	predicted gene, 40059
3	gene	58.84210	58.86675	positive	MGI_C57BL6J_5622945	Gm40060	NCBI_Gene:105244454	MGI:5622945	lncRNA gene	predicted gene, 40060
3	gene	58.84403	58.88534	negative	MGI_C57BL6J_2388124	Clrn1	NCBI_Gene:229320,ENSEMBL:ENSMUSG00000043850	MGI:2388124	protein coding gene	clarin 1
3	gene	58.97563	58.97573	positive	MGI_C57BL6J_5452268	Gm22491	ENSEMBL:ENSMUSG00000087815	MGI:5452268	snRNA gene	predicted gene, 22491
3	gene	58.97886	58.97903	negative	MGI_C57BL6J_5455349	Gm25572	ENSEMBL:ENSMUSG00000088152	MGI:5455349	snRNA gene	predicted gene, 25572
3	pseudogene	58.98713	58.98786	positive	MGI_C57BL6J_3642685	Rpl13-ps6	NCBI_Gene:100040416,ENSEMBL:ENSMUSG00000059776	MGI:3642685	pseudogene	ribosomal protein L13, pseudogene 6
3	gene	59.00162	59.00169	positive	MGI_C57BL6J_5531175	Gm27793	ENSEMBL:ENSMUSG00000099052	MGI:5531175	unclassified non-coding RNA gene	predicted gene, 27793
3	gene	59.00247	59.00616	negative	MGI_C57BL6J_5663707	Gm43570	ENSEMBL:ENSMUSG00000105945	MGI:5663707	lncRNA gene	predicted gene 43570
3	gene	59.00559	59.31868	positive	MGI_C57BL6J_2139916	Med12l	NCBI_Gene:329650,ENSEMBL:ENSMUSG00000056476	MGI:2139916	protein coding gene	mediator complex subunit 12-like
3	gene	59.09645	59.10182	negative	MGI_C57BL6J_2442043	Gpr171	NCBI_Gene:229323,ENSEMBL:ENSMUSG00000050075	MGI:2442043	protein coding gene	G protein-coupled receptor 171
3	gene	59.11386	59.15362	negative	MGI_C57BL6J_2155705	P2ry14	NCBI_Gene:140795,ENSEMBL:ENSMUSG00000036381	MGI:2155705	protein coding gene	purinergic receptor P2Y, G-protein coupled, 14
3	gene	59.14630	59.15363	negative	MGI_C57BL6J_2444074	F630111L10Rik	NCBI_Gene:320463	MGI:2444074	lncRNA gene	RIKEN cDNA F630111L10 gene
3	gene	59.17890	59.19547	negative	MGI_C57BL6J_1934133	Gpr87	NCBI_Gene:84111,ENSEMBL:ENSMUSG00000051431	MGI:1934133	protein coding gene	G protein-coupled receptor 87
3	gene	59.20789	59.21088	negative	MGI_C57BL6J_1921441	P2ry13	NCBI_Gene:74191,ENSEMBL:ENSMUSG00000036362	MGI:1921441	protein coding gene	purinergic receptor P2Y, G-protein coupled 13
3	gene	59.21627	59.26301	negative	MGI_C57BL6J_1918089	P2ry12	NCBI_Gene:70839,ENSEMBL:ENSMUSG00000036353	MGI:1918089	protein coding gene	purinergic receptor P2Y, G-protein coupled 12
3	gene	59.26979	59.27131	positive	MGI_C57BL6J_5663726	Gm43589	ENSEMBL:ENSMUSG00000104550	MGI:5663726	unclassified gene	predicted gene 43589
3	gene	59.31674	59.34444	negative	MGI_C57BL6J_1923481	Igsf10	NCBI_Gene:242050,ENSEMBL:ENSMUSG00000036334	MGI:1923481	protein coding gene	immunoglobulin superfamily, member 10
3	gene	59.34427	59.35117	positive	MGI_C57BL6J_5611414	Gm38186	ENSEMBL:ENSMUSG00000103668	MGI:5611414	lncRNA gene	predicted gene, 38186
3	pseudogene	59.42453	59.42476	positive	MGI_C57BL6J_5610943	Gm37715	ENSEMBL:ENSMUSG00000102247	MGI:5610943	pseudogene	predicted gene, 37715
3	pseudogene	59.43154	59.43335	positive	MGI_C57BL6J_3648019	Gm8276	NCBI_Gene:666756,ENSEMBL:ENSMUSG00000102550	MGI:3648019	pseudogene	predicted gene 8276
3	pseudogene	59.46967	59.47409	negative	MGI_C57BL6J_5611516	Gm38288	ENSEMBL:ENSMUSG00000103211	MGI:5611516	pseudogene	predicted gene, 38288
3	gene	59.47493	59.47500	negative	MGI_C57BL6J_4414092	n-TVcac1	NCBI_Gene:102467620	MGI:4414092	tRNA gene	nuclear encoded tRNA valine 1 (anticodon CAC)
3	pseudogene	59.48302	59.48329	positive	MGI_C57BL6J_5610999	Gm37771	ENSEMBL:ENSMUSG00000104038	MGI:5610999	pseudogene	predicted gene, 37771
3	pseudogene	59.50558	59.53523	negative	MGI_C57BL6J_3644725	Gm4856	NCBI_Gene:229330,ENSEMBL:ENSMUSG00000103598	MGI:3644725	pseudogene	predicted gene 4856
3	pseudogene	59.60245	59.63576	negative	MGI_C57BL6J_3644280	Gm5709	NCBI_Gene:435732,ENSEMBL:ENSMUSG00000095128	MGI:3644280	pseudogene	predicted gene 5709
3	gene	59.66286	59.66528	positive	MGI_C57BL6J_5611154	Gm37926	ENSEMBL:ENSMUSG00000102480	MGI:5611154	unclassified gene	predicted gene, 37926
3	gene	59.72979	59.75240	positive	MGI_C57BL6J_3779495	Aadacl2fm2	NCBI_Gene:433597,ENSEMBL:ENSMUSG00000090527	MGI:3779495	protein coding gene	AADACL2 family member 2
3	pseudogene	59.73675	59.73686	negative	MGI_C57BL6J_5611436	Gm38208	ENSEMBL:ENSMUSG00000104471	MGI:5611436	pseudogene	predicted gene, 38208
3	pseudogene	59.73718	59.73732	negative	MGI_C57BL6J_5610807	Gm37579	ENSEMBL:ENSMUSG00000102390	MGI:5610807	pseudogene	predicted gene, 37579
3	pseudogene	59.76721	59.76891	positive	MGI_C57BL6J_3644451	Gm5539	NCBI_Gene:433598,ENSEMBL:ENSMUSG00000103986	MGI:3644451	pseudogene	predicted gene 5539
3	gene	59.77781	59.84682	positive	MGI_C57BL6J_1921922	4930449A18Rik	ENSEMBL:ENSMUSG00000074589	MGI:1921922	protein coding gene	RIKEN cDNA 4930449A18 gene
3	pseudogene	59.78322	59.78863	negative	MGI_C57BL6J_3780925	Gm2756	NCBI_Gene:100040407,ENSEMBL:ENSMUSG00000102757	MGI:3780925	pseudogene	predicted gene 2756
3	gene	59.83837	59.84682	positive	MGI_C57BL6J_4361133	Gm16527	NCBI_Gene:669780	MGI:4361133	protein coding gene	predicted gene, 16527
3	gene	59.86105	59.87731	positive	MGI_C57BL6J_3643798	Aadacl2fm3	NCBI_Gene:666803,ENSEMBL:ENSMUSG00000095522	MGI:3643798	protein coding gene	AADACL2 family member 3
3	gene	59.92521	59.93795	positive	MGI_C57BL6J_3028051	Aadacl2fm1	NCBI_Gene:229333,ENSEMBL:ENSMUSG00000036951	MGI:3028051	protein coding gene	AADACL2 family member 1
3	pseudogene	59.95231	59.97359	positive	MGI_C57BL6J_3819177	Gm9696	NCBI_Gene:676914,ENSEMBL:ENSMUSG00000070465	MGI:3819177	pseudogene	predicted gene 9696
3	gene	60.00674	60.02542	positive	MGI_C57BL6J_3646333	Aadacl2	NCBI_Gene:639634,ENSEMBL:ENSMUSG00000091376	MGI:3646333	protein coding gene	arylacetamide deacetylase like 2
3	pseudogene	60.02036	60.02087	negative	MGI_C57BL6J_5010612	Gm18427	NCBI_Gene:100417154,ENSEMBL:ENSMUSG00000103177	MGI:5010612	pseudogene	predicted gene, 18427
3	gene	60.02572	60.04016	positive	MGI_C57BL6J_1915008	Aadac	NCBI_Gene:67758,ENSEMBL:ENSMUSG00000027761	MGI:1915008	protein coding gene	arylacetamide deacetylase
3	gene	60.08187	60.08757	positive	MGI_C57BL6J_1934135	Sucnr1	NCBI_Gene:84112,ENSEMBL:ENSMUSG00000027762	MGI:1934135	protein coding gene	succinate receptor 1
3	gene	60.12764	60.12775	negative	MGI_C57BL6J_5454159	Gm24382	ENSEMBL:ENSMUSG00000084647	MGI:5454159	snRNA gene	predicted gene, 24382
3	gene	60.29342	60.30941	negative	MGI_C57BL6J_5592809	Gm33650	NCBI_Gene:102636642	MGI:5592809	lncRNA gene	predicted gene, 33650
3	pseudogene	60.34219	60.34309	negative	MGI_C57BL6J_3779880	Tgif1-ps	NCBI_Gene:669823,ENSEMBL:ENSMUSG00000107270	MGI:3779880	pseudogene	TGFB-induced factor homeobox 1, pseudogene
3	gene	60.47279	60.62975	positive	MGI_C57BL6J_1928482	Mbnl1	NCBI_Gene:56758,ENSEMBL:ENSMUSG00000027763	MGI:1928482	protein coding gene	muscleblind like splicing factor 1
3	gene	60.53575	60.53974	positive	MGI_C57BL6J_5610817	Gm37589	ENSEMBL:ENSMUSG00000104235	MGI:5610817	unclassified gene	predicted gene, 37589
3	gene	60.57770	60.58136	positive	MGI_C57BL6J_5012001	Gm19816	NA	NA	unclassified gene	predicted gene%2c 19816
3	gene	60.60438	60.60776	positive	MGI_C57BL6J_5610716	Gm37488	ENSEMBL:ENSMUSG00000104125	MGI:5610716	unclassified gene	predicted gene, 37488
3	pseudogene	60.73763	60.73779	negative	MGI_C57BL6J_5611508	Gm38280	ENSEMBL:ENSMUSG00000104337	MGI:5611508	pseudogene	predicted gene, 38280
3	pseudogene	60.76958	60.77164	negative	MGI_C57BL6J_5592866	Gm33707	NCBI_Gene:102636711,ENSEMBL:ENSMUSG00000102298	MGI:5592866	pseudogene	predicted gene, 33707
3	gene	60.78148	61.00379	negative	MGI_C57BL6J_5610263	Gm37035	NCBI_Gene:105244455,ENSEMBL:ENSMUSG00000102564	MGI:5610263	lncRNA gene	predicted gene, 37035
3	gene	60.78836	60.79473	positive	MGI_C57BL6J_5611554	Gm38326	NCBI_Gene:102642162,ENSEMBL:ENSMUSG00000103587	MGI:5611554	lncRNA gene	predicted gene, 38326
3	pseudogene	60.86071	60.86109	positive	MGI_C57BL6J_5610213	Gm36985	ENSEMBL:ENSMUSG00000102490	MGI:5610213	pseudogene	predicted gene, 36985
3	pseudogene	60.87700	60.87884	positive	MGI_C57BL6J_3644852	Gm8325	NCBI_Gene:666853,ENSEMBL:ENSMUSG00000027694	MGI:3644852	pseudogene	predicted pseudogene 8325
3	gene	61.00279	61.00898	positive	MGI_C57BL6J_105049	P2ry1	NCBI_Gene:18441,ENSEMBL:ENSMUSG00000027765	MGI:105049	protein coding gene	purinergic receptor P2Y, G-protein coupled 1
3	pseudogene	61.29116	61.29145	negative	MGI_C57BL6J_5610947	Gm37719	ENSEMBL:ENSMUSG00000102242	MGI:5610947	pseudogene	predicted gene, 37719
3	pseudogene	61.32849	61.32923	negative	MGI_C57BL6J_5012086	Gm19901	NCBI_Gene:100503798,ENSEMBL:ENSMUSG00000102667	MGI:5012086	pseudogene	predicted gene, 19901
3	gene	61.35855	61.36190	negative	MGI_C57BL6J_5610924	Gm37696	ENSEMBL:ENSMUSG00000103473	MGI:5610924	lncRNA gene	predicted gene, 37696
3	gene	61.36164	61.36870	positive	MGI_C57BL6J_1921262	Rap2b	NCBI_Gene:74012,ENSEMBL:ENSMUSG00000036894	MGI:1921262	protein coding gene	RAP2B, member of RAS oncogene family
3	gene	61.36225	61.36595	negative	MGI_C57BL6J_3697707	B430305J03Rik	ENSEMBL:ENSMUSG00000053706	MGI:3697707	protein coding gene	RIKEN cDNA B430305J03 gene
3	gene	61.39215	61.41303	positive	MGI_C57BL6J_5622946	Gm40061	NCBI_Gene:105244456	MGI:5622946	lncRNA gene	predicted gene, 40061
3	pseudogene	61.46166	61.46288	negative	MGI_C57BL6J_3643135	Gm8349	NCBI_Gene:666891,ENSEMBL:ENSMUSG00000098208	MGI:3643135	pseudogene	predicted gene 8349
3	pseudogene	62.06754	62.06979	negative	MGI_C57BL6J_3780107	Gm9700	NCBI_Gene:676965,ENSEMBL:ENSMUSG00000104489	MGI:3780107	pseudogene	predicted gene 9700
3	gene	62.12321	62.12356	positive	MGI_C57BL6J_5610632	Gm37404	ENSEMBL:ENSMUSG00000103322	MGI:5610632	unclassified gene	predicted gene, 37404
3	gene	62.33752	62.34053	negative	MGI_C57BL6J_3704218	9330121J05Rik	ENSEMBL:ENSMUSG00000103502	MGI:3704218	lncRNA gene	RIKEN cDNA 9330121J05 gene
3	gene	62.33834	62.46222	positive	MGI_C57BL6J_1918053	Arhgef26	NCBI_Gene:622434,ENSEMBL:ENSMUSG00000036885	MGI:1918053	protein coding gene	Rho guanine nucleotide exchange factor (GEF) 26
3	gene	62.34139	62.35052	negative	MGI_C57BL6J_5593082	Gm33923	NCBI_Gene:102637008	MGI:5593082	lncRNA gene	predicted gene, 33923
3	gene	62.46801	62.50703	negative	MGI_C57BL6J_1919412	Dhx36	NCBI_Gene:72162,ENSEMBL:ENSMUSG00000027770	MGI:1919412	protein coding gene	DEAH (Asp-Glu-Ala-His) box polypeptide 36
3	gene	62.52908	62.60544	negative	MGI_C57BL6J_2443628	Gpr149	NCBI_Gene:229357,ENSEMBL:ENSMUSG00000043441	MGI:2443628	protein coding gene	G protein-coupled receptor 149
3	gene	62.60493	62.76393	positive	MGI_C57BL6J_5593207	Gm34048	NCBI_Gene:102637165	MGI:5593207	lncRNA gene	predicted gene, 34048
3	pseudogene	62.76144	62.76202	positive	MGI_C57BL6J_5010567	Gm18382	NCBI_Gene:100417044,ENSEMBL:ENSMUSG00000103764	MGI:5010567	pseudogene	predicted gene, 18382
3	gene	62.77198	62.86064	positive	MGI_C57BL6J_5622947	Gm40062	NCBI_Gene:105244457	MGI:5622947	lncRNA gene	predicted gene, 40062
3	gene	62.86768	62.88900	positive	MGI_C57BL6J_5622948	Gm40063	NCBI_Gene:105244458	MGI:5622948	lncRNA gene	predicted gene, 40063
3	pseudogene	62.92376	62.92426	negative	MGI_C57BL6J_3780108	Gm9701	NCBI_Gene:676984,ENSEMBL:ENSMUSG00000063001	MGI:3780108	pseudogene	predicted gene 9701
3	gene	63.15222	63.15236	positive	MGI_C57BL6J_5452210	Gm22433	ENSEMBL:ENSMUSG00000089175	MGI:5452210	snoRNA gene	predicted gene, 22433
3	pseudogene	63.17311	63.17386	negative	MGI_C57BL6J_3645001	Gm8388	NCBI_Gene:666967,ENSEMBL:ENSMUSG00000102270	MGI:3645001	pseudogene	predicted gene 8388
3	gene	63.23282	63.24545	negative	MGI_C57BL6J_5622949	Gm40064	NCBI_Gene:105244459	MGI:5622949	lncRNA gene	predicted gene, 40064
3	gene	63.24154	63.38603	positive	MGI_C57BL6J_97004	Mme	NCBI_Gene:17380,ENSEMBL:ENSMUSG00000027820	MGI:97004	protein coding gene	membrane metallo endopeptidase
3	gene	63.43925	63.45790	positive	MGI_C57BL6J_5593399	Gm34240	NCBI_Gene:102637430,ENSEMBL:ENSMUSG00000104336	MGI:5593399	lncRNA gene	predicted gene, 34240
3	gene	63.48110	63.48391	negative	MGI_C57BL6J_5593461	Strit1	NCBI_Gene:102637511,ENSEMBL:ENSMUSG00000103476	MGI:5593461	protein coding gene	small transmembrane regulator of ion transport 1
3	gene	63.48388	63.48437	positive	MGI_C57BL6J_5610507	Gm37279	ENSEMBL:ENSMUSG00000102883	MGI:5610507	unclassified gene	predicted gene, 37279
3	gene	63.48899	63.48910	positive	MGI_C57BL6J_5454723	Gm24946	ENSEMBL:ENSMUSG00000088957	MGI:5454723	snRNA gene	predicted gene, 24946
3	gene	63.69620	63.89972	negative	MGI_C57BL6J_2683547	Plch1	NCBI_Gene:269437,ENSEMBL:ENSMUSG00000036834	MGI:2683547	protein coding gene	phospholipase C, eta 1
3	gene	63.77021	63.77031	positive	MGI_C57BL6J_5453277	Gm23500	ENSEMBL:ENSMUSG00000088360	MGI:5453277	snRNA gene	predicted gene, 23500
3	gene	63.79610	63.83685	positive	MGI_C57BL6J_5826444	Gm46807	NCBI_Gene:108168874	MGI:5826444	lncRNA gene	predicted gene, 46807
3	pseudogene	63.82579	63.82644	positive	MGI_C57BL6J_3802047	Gm16162	ENSEMBL:ENSMUSG00000090131	MGI:3802047	pseudogene	predicted gene 16162
3	pseudogene	63.84312	63.84407	positive	MGI_C57BL6J_3801947	Gm16129	ENSEMBL:ENSMUSG00000085290	MGI:3801947	pseudogene	predicted gene 16129
3	pseudogene	63.90543	63.90573	positive	MGI_C57BL6J_5593538	Gm34379	NCBI_Gene:102637617,ENSEMBL:ENSMUSG00000103905	MGI:5593538	pseudogene	predicted gene, 34379
3	gene	63.91468	63.92947	negative	MGI_C57BL6J_3607716	E130311K13Rik	NCBI_Gene:329659,ENSEMBL:ENSMUSG00000048581	MGI:3607716	protein coding gene	RIKEN cDNA E130311K13 gene
3	gene	63.93351	63.96477	negative	MGI_C57BL6J_1332247	Slc33a1	NCBI_Gene:11416,ENSEMBL:ENSMUSG00000027822	MGI:1332247	protein coding gene	solute carrier family 33 (acetyl-CoA transporter), member 1
3	gene	63.96363	63.96866	positive	MGI_C57BL6J_5477344	Gm26850	ENSEMBL:ENSMUSG00000097724	MGI:5477344	lncRNA gene	predicted gene, 26850
3	gene	63.96482	64.02258	positive	MGI_C57BL6J_2448526	Gmps	NCBI_Gene:229363,ENSEMBL:ENSMUSG00000027823	MGI:2448526	protein coding gene	guanine monophosphate synthetase
3	pseudogene	64.05303	64.05561	negative	MGI_C57BL6J_3757653	Vmn2r-ps3	NCBI_Gene:100124546,ENSEMBL:ENSMUSG00000090303	MGI:3757653	pseudogene	vomeronasal 2, receptor, pseudogene 3
3	gene	64.07977	64.22085	positive	MGI_C57BL6J_3645892	Vmn2r1	NCBI_Gene:56544,ENSEMBL:ENSMUSG00000027824	MGI:3645892	protein coding gene	vomeronasal 2, receptor 1
3	gene	64.10963	64.10974	positive	MGI_C57BL6J_5451942	Gm22165	ENSEMBL:ENSMUSG00000089039	MGI:5451942	snRNA gene	predicted gene, 22165
3	gene	64.11528	64.17092	negative	MGI_C57BL6J_3757666	Vmn2r2	NCBI_Gene:100125586,ENSEMBL:ENSMUSG00000043897	MGI:3757666	protein coding gene	vomeronasal 2, receptor 2
3	pseudogene	64.16339	64.16385	positive	MGI_C57BL6J_3779465	Gm5139	NCBI_Gene:380739,ENSEMBL:ENSMUSG00000093447	MGI:3779465	pseudogene	predicted gene 5139
3	pseudogene	64.19557	64.21368	negative	MGI_C57BL6J_5010479	Gm18294	NCBI_Gene:100416861,ENSEMBL:ENSMUSG00000093416	MGI:5010479	pseudogene	predicted gene, 18294
3	gene	64.23373	64.23546	positive	MGI_C57BL6J_5593621	Gm34462	NCBI_Gene:102637724	MGI:5593621	lncRNA gene	predicted gene, 34462
3	gene	64.25722	64.28971	negative	MGI_C57BL6J_3643995	Vmn2r3	NCBI_Gene:637004,ENSEMBL:ENSMUSG00000091572	MGI:3643995	protein coding gene	vomeronasal 2, receptor 3
3	gene	64.27582	64.27619	negative	MGI_C57BL6J_1345615	Ifld3	NA	NA	unclassified gene	induced in fatty liver dystrophy 3
3	gene	64.31841	64.31856	negative	MGI_C57BL6J_5453674	Gm23897	ENSEMBL:ENSMUSG00000088735	MGI:5453674	snoRNA gene	predicted gene, 23897
3	pseudogene	64.32866	64.33285	positive	MGI_C57BL6J_3757669	Vmn2r-ps4	NCBI_Gene:100124547,ENSEMBL:ENSMUSG00000093503	MGI:3757669	pseudogene	vomeronasal 2, receptor, pseudogene 4
3	pseudogene	64.33956	64.35772	negative	MGI_C57BL6J_3645404	Vmn2r-ps5	NCBI_Gene:667031,ENSEMBL:ENSMUSG00000091967	MGI:3645404	polymorphic pseudogene	vomeronasal 2, receptor, pseudogene 5
3	gene	64.38304	64.41537	negative	MGI_C57BL6J_3648229	Vmn2r4	NCBI_Gene:637053,ENSEMBL:ENSMUSG00000092049	MGI:3648229	protein coding gene	vomeronasal 2, receptor 4
3	pseudogene	64.43688	64.43829	negative	MGI_C57BL6J_3757678	Vmn2r-ps6	NCBI_Gene:100124548,ENSEMBL:ENSMUSG00000093395	MGI:3757678	pseudogene	vomeronasal 2, receptor, pseudogene 6
3	pseudogene	64.44260	64.44397	negative	MGI_C57BL6J_3757679	Vmn2r-ps7	NCBI_Gene:672951,ENSEMBL:ENSMUSG00000093546	MGI:3757679	pseudogene	vomeronasal 2, receptor, pseudogene 7
3	pseudogene	64.44797	64.46009	positive	MGI_C57BL6J_5313103	Gm20656	ENSEMBL:ENSMUSG00000093671	MGI:5313103	pseudogene	predicted gene 20656
3	pseudogene	64.47702	64.47932	positive	MGI_C57BL6J_3757680	Vmn2r-ps8	NCBI_Gene:100124549,ENSEMBL:ENSMUSG00000094482	MGI:3757680	pseudogene	vomeronasal 2, receptor, pseudogene 8
3	gene	64.48861	64.50984	negative	MGI_C57BL6J_3649074	Vmn2r5	NCBI_Gene:667060,ENSEMBL:ENSMUSG00000068999	MGI:3649074	protein coding gene	vomeronasal 2, receptor 5
3	gene	64.53131	64.56583	negative	MGI_C57BL6J_3649068	Vmn2r6	NCBI_Gene:667069,ENSEMBL:ENSMUSG00000090581	MGI:3649068	protein coding gene	vomeronasal 2, receptor 6
3	pseudogene	64.59152	64.59290	negative	MGI_C57BL6J_3757686	Vmn2r-ps9	NCBI_Gene:100124550,ENSEMBL:ENSMUSG00000093699	MGI:3757686	pseudogene	vomeronasal 2, receptor, pseudogene 9
3	pseudogene	64.59691	64.60577	positive	MGI_C57BL6J_5313104	Gm20657	ENSEMBL:ENSMUSG00000093484	MGI:5313104	pseudogene	predicted gene 20657
3	pseudogene	64.60043	64.60114	positive	MGI_C57BL6J_3781218	Gm3040	NCBI_Gene:100416170	MGI:3781218	pseudogene	predicted gene 3040
3	pseudogene	64.62169	64.62399	positive	MGI_C57BL6J_3757943	Vmn2r-ps10	NCBI_Gene:100124554,ENSEMBL:ENSMUSG00000095107	MGI:3757943	pseudogene	vomeronasal 2, receptor, pseudogene 10
3	pseudogene	64.63257	64.84474	negative	MGI_C57BL6J_2441682	Vmn2r-ps11	NCBI_Gene:319210,ENSEMBL:ENSMUSG00000093434	MGI:2441682	pseudogene	vomeronasal 2, receptor, pseudogene 11
3	gene	64.63286	64.84474	negative	MGI_C57BL6J_5504054	Gm26939	ENSEMBL:ENSMUSG00000097538	MGI:5504054	lncRNA gene	predicted gene, 26939
3	gene	64.68504	64.84476	negative	MGI_C57BL6J_2441693	Vmn2r7	NCBI_Gene:319217,ENSEMBL:ENSMUSG00000062200	MGI:2441693	protein coding gene	vomeronasal 2, receptor 7
3	pseudogene	64.74475	64.74564	negative	MGI_C57BL6J_3757944	Vmn2r-ps12	NCBI_Gene:100125273,ENSEMBL:ENSMUSG00000093474	MGI:3757944	pseudogene	vomeronasal 2, receptor, pseudogene 12
3	gene	64.89447	64.89460	negative	MGI_C57BL6J_5454999	Gm25222	ENSEMBL:ENSMUSG00000088824	MGI:5454999	snoRNA gene	predicted gene, 25222
3	pseudogene	64.89885	64.89976	positive	MGI_C57BL6J_3757946	Vmn2r-ps13	NCBI_Gene:670110,ENSEMBL:ENSMUSG00000093767	MGI:3757946	pseudogene	vomeronasal 2, receptor, pseudogene 13
3	gene	64.94905	65.37823	positive	MGI_C57BL6J_109155	Kcnab1	NCBI_Gene:16497,ENSEMBL:ENSMUSG00000027827	MGI:109155	protein coding gene	potassium voltage-gated channel, shaker-related subfamily, beta member 1
3	gene	64.94922	65.22370	positive	MGI_C57BL6J_5611276	Gm38048	ENSEMBL:ENSMUSG00000102437	MGI:5611276	lncRNA gene	predicted gene, 38048
3	gene	65.13306	65.30268	negative	MGI_C57BL6J_2443553	A330015K06Rik	NCBI_Gene:102637797,ENSEMBL:ENSMUSG00000104093	MGI:2443553	lncRNA gene	RIKEN cDNA A330015K06 gene
3	gene	65.32402	65.34943	negative	MGI_C57BL6J_2442748	A730090N16Rik	NCBI_Gene:319798,ENSEMBL:ENSMUSG00000090120	MGI:2442748	lncRNA gene	RIKEN cDNA A730090N16 gene
3	gene	65.37965	65.39262	negative	MGI_C57BL6J_1914687	Ssr3	NCBI_Gene:67437,ENSEMBL:ENSMUSG00000027828	MGI:1914687	protein coding gene	signal sequence receptor, gamma
3	pseudogene	65.39332	65.39629	positive	MGI_C57BL6J_3644824	Gm5540	NCBI_Gene:433604,ENSEMBL:ENSMUSG00000048916	MGI:3644824	pseudogene	predicted pseudogene 5540
3	gene	65.44941	65.47981	positive	MGI_C57BL6J_5593735	Gm34576	NCBI_Gene:102637876	MGI:5593735	lncRNA gene	predicted gene, 34576
3	gene	65.49409	65.49563	negative	MGI_C57BL6J_5593939	Gm34780	NCBI_Gene:102638146,ENSEMBL:ENSMUSG00000103513	MGI:5593939	lncRNA gene	predicted gene, 34780
3	gene	65.49517	65.51729	positive	MGI_C57BL6J_5622951	Gm40066	NCBI_Gene:105244461	MGI:5622951	lncRNA gene	predicted gene, 40066
3	pseudogene	65.50628	65.50664	negative	MGI_C57BL6J_5610237	Gm37009	ENSEMBL:ENSMUSG00000103880	MGI:5610237	pseudogene	predicted gene, 37009
3	gene	65.50646	65.52004	negative	MGI_C57BL6J_5621388	Gm38503	NCBI_Gene:102637953	MGI:5621388	lncRNA gene	predicted gene, 38503
3	gene	65.50726	65.52941	negative	MGI_C57BL6J_1918254	4931440P22Rik	NCBI_Gene:71004,ENSEMBL:ENSMUSG00000074580	MGI:1918254	lncRNA gene	RIKEN cDNA 4931440P22 gene
3	gene	65.52570	65.52579	positive	MGI_C57BL6J_5452056	Gm22279	ENSEMBL:ENSMUSG00000087825	MGI:5452056	snRNA gene	predicted gene, 22279
3	gene	65.52841	65.55552	positive	MGI_C57BL6J_2159210	Tiparp	NCBI_Gene:99929,ENSEMBL:ENSMUSG00000034640	MGI:2159210	protein coding gene	TCDD-inducible poly(ADP-ribose) polymerase
3	gene	65.57522	65.58085	negative	MGI_C57BL6J_5594083	Gm34924	NCBI_Gene:102638334	MGI:5594083	lncRNA gene	predicted gene, 34924
3	pseudogene	65.61350	65.61532	positive	MGI_C57BL6J_3648046	Gm5847	NCBI_Gene:545530,ENSEMBL:ENSMUSG00000082280	MGI:3648046	pseudogene	predicted gene 5847
3	pseudogene	65.61537	65.61617	negative	MGI_C57BL6J_5611461	Gm38233	ENSEMBL:ENSMUSG00000103294	MGI:5611461	pseudogene	predicted gene, 38233
3	gene	65.65929	65.65943	positive	MGI_C57BL6J_5531019	Mir8120	miRBase:MI0026052,NCBI_Gene:102465905,ENSEMBL:ENSMUSG00000098944	MGI:5531019	miRNA gene	microRNA 8120
3	gene	65.65954	65.83248	positive	MGI_C57BL6J_3645902	Lekr1	NCBI_Gene:624866,ENSEMBL:ENSMUSG00000074579	MGI:3645902	protein coding gene	leucine, glutamate and lysine rich 1
3	gene	65.67839	65.68088	positive	MGI_C57BL6J_5611004	Gm37776	ENSEMBL:ENSMUSG00000104037	MGI:5611004	unclassified gene	predicted gene, 37776
3	gene	65.77151	65.77162	negative	MGI_C57BL6J_5455532	Gm25755	ENSEMBL:ENSMUSG00000065330	MGI:5455532	snRNA gene	predicted gene, 25755
3	gene	65.82912	65.87228	negative	MGI_C57BL6J_5610587	Gm37359	ENSEMBL:ENSMUSG00000103620	MGI:5610587	lncRNA gene	predicted gene, 37359
3	gene	65.86327	65.86483	negative	MGI_C57BL6J_5610359	Gm37131	ENSEMBL:ENSMUSG00000103440	MGI:5610359	unclassified gene	predicted gene, 37131
3	gene	65.92610	65.92828	negative	MGI_C57BL6J_5594198	Gm35039	NCBI_Gene:102638487	MGI:5594198	lncRNA gene	predicted gene, 35039
3	pseudogene	65.93349	65.93391	negative	MGI_C57BL6J_5610265	Gm37037	ENSEMBL:ENSMUSG00000102566	MGI:5610265	pseudogene	predicted gene, 37037
3	gene	65.94591	65.95839	negative	MGI_C57BL6J_1922664	Ccnl1	NCBI_Gene:56706,ENSEMBL:ENSMUSG00000027829	MGI:1922664	protein coding gene	cyclin L1
3	gene	65.95776	65.96204	positive	MGI_C57BL6J_5610533	Gm37305	ENSEMBL:ENSMUSG00000103041	MGI:5610533	lncRNA gene	predicted gene, 37305
3	pseudogene	65.96873	65.97028	negative	MGI_C57BL6J_5594265	Gm35106	NCBI_Gene:105244463,ENSEMBL:ENSMUSG00000102914	MGI:5594265	pseudogene	predicted gene, 35106
3	gene	65.96991	65.97192	positive	MGI_C57BL6J_5610306	Gm37078	ENSEMBL:ENSMUSG00000102652	MGI:5610306	unclassified gene	predicted gene, 37078
3	pseudogene	65.98716	65.98975	negative	MGI_C57BL6J_5011209	Gm19024	NCBI_Gene:100418133,ENSEMBL:ENSMUSG00000103641	MGI:5011209	pseudogene	predicted gene, 19024
3	pseudogene	66.02950	66.03152	negative	MGI_C57BL6J_3643872	Gm6546	NCBI_Gene:625048,ENSEMBL:ENSMUSG00000103369	MGI:3643872	pseudogene	predicted gene 6546
3	gene	66.05356	66.29707	negative	MGI_C57BL6J_1920039	Veph1	NCBI_Gene:72789,ENSEMBL:ENSMUSG00000027831	MGI:1920039	protein coding gene	ventricular zone expressed PH domain-containing 1
3	gene	66.08668	66.08779	positive	MGI_C57BL6J_5611050	Gm37822	ENSEMBL:ENSMUSG00000104189	MGI:5611050	unclassified gene	predicted gene, 37822
3	gene	66.08811	66.08826	negative	MGI_C57BL6J_5456219	Gm26442	ENSEMBL:ENSMUSG00000064522	MGI:5456219	snRNA gene	predicted gene, 26442
3	pseudogene	66.09981	66.10006	positive	MGI_C57BL6J_5610201	Gm36973	ENSEMBL:ENSMUSG00000104307	MGI:5610201	pseudogene	predicted gene, 36973
3	pseudogene	66.12840	66.12975	negative	MGI_C57BL6J_98800	Tpi-rs2	NCBI_Gene:111205,ENSEMBL:ENSMUSG00000097968	MGI:98800	pseudogene	triosephosphate isomerase related sequence 2
3	pseudogene	66.19109	66.19124	negative	MGI_C57BL6J_5610558	Gm37330	ENSEMBL:ENSMUSG00000103208	MGI:5610558	pseudogene	predicted gene, 37330
3	gene	66.21989	66.22581	positive	MGI_C57BL6J_104641	Ptx3	NCBI_Gene:19288,ENSEMBL:ENSMUSG00000027832	MGI:104641	protein coding gene	pentraxin related gene
3	pseudogene	66.36454	66.36463	positive	MGI_C57BL6J_6275305	Gm50014	ENSEMBL:ENSMUSG00000117623	MGI:6275305	pseudogene	predicted gene, 50014
3	gene	66.37430	66.38810	positive	MGI_C57BL6J_5594343	Gm35184	NCBI_Gene:102638679	MGI:5594343	lncRNA gene	predicted gene, 35184
3	gene	66.40041	66.40607	positive	MGI_C57BL6J_5594395	Gm35236	NCBI_Gene:102638746	MGI:5594395	lncRNA gene	predicted gene, 35236
3	pseudogene	66.56278	66.56355	negative	MGI_C57BL6J_5010137	Gm17952	NCBI_Gene:100416166,ENSEMBL:ENSMUSG00000103600	MGI:5010137	pseudogene	predicted gene, 17952
3	pseudogene	66.88235	66.88314	positive	MGI_C57BL6J_3646021	Gm6555	NCBI_Gene:625115,ENSEMBL:ENSMUSG00000103700	MGI:3646021	pseudogene	predicted gene 6555
3	pseudogene	66.90736	66.90777	negative	MGI_C57BL6J_5611584	Gm38356	ENSEMBL:ENSMUSG00000103318	MGI:5611584	pseudogene	predicted gene, 38356
3	pseudogene	66.95354	66.95386	positive	MGI_C57BL6J_5663653	Gm43516	ENSEMBL:ENSMUSG00000105794	MGI:5663653	pseudogene	predicted gene 43516
3	gene	66.97172	66.98177	negative	MGI_C57BL6J_1201673	Shox2	NCBI_Gene:20429,ENSEMBL:ENSMUSG00000027833	MGI:1201673	protein coding gene	short stature homeobox 2
3	gene	66.98139	67.35840	positive	MGI_C57BL6J_1914130	Rsrc1	NCBI_Gene:66880,ENSEMBL:ENSMUSG00000034544	MGI:1914130	protein coding gene	arginine/serine-rich coiled-coil 1
3	gene	67.05596	67.05606	positive	MGI_C57BL6J_5452072	Gm22295	ENSEMBL:ENSMUSG00000065245	MGI:5452072	snRNA gene	predicted gene, 22295
3	gene	67.36546	67.37516	negative	MGI_C57BL6J_4937036	Gm17402	ENSEMBL:ENSMUSG00000090408	MGI:4937036	protein coding gene	predicted gene, 17402
3	gene	67.37410	67.40000	positive	MGI_C57BL6J_1341819	Mlf1	NCBI_Gene:17349,ENSEMBL:ENSMUSG00000048416	MGI:1341819	protein coding gene	myeloid leukemia factor 1
3	gene	67.43010	67.47653	positive	MGI_C57BL6J_107339	Gfm1	NCBI_Gene:28030,ENSEMBL:ENSMUSG00000027774	MGI:107339	protein coding gene	G elongation factor, mitochondrial 1
3	gene	67.45800	67.46393	negative	MGI_C57BL6J_107633	Lxn	NCBI_Gene:17035,ENSEMBL:ENSMUSG00000047557	MGI:107633	protein coding gene	latexin
3	gene	67.47698	67.47882	positive	MGI_C57BL6J_5662705	Gm42568	ENSEMBL:ENSMUSG00000103703	MGI:5662705	unclassified gene	predicted gene 42568
3	gene	67.47889	67.51552	negative	MGI_C57BL6J_1924461	Rarres1	NCBI_Gene:109222,ENSEMBL:ENSMUSG00000049404	MGI:1924461	protein coding gene	retinoic acid receptor responder (tazarotene induced) 1
3	gene	67.51567	67.51966	positive	MGI_C57BL6J_5622952	Gm40067	NCBI_Gene:105244464	MGI:5622952	lncRNA gene	predicted gene, 40067
3	gene	67.52266	67.55343	negative	MGI_C57BL6J_5594458	Gm35299	NCBI_Gene:102638825,ENSEMBL:ENSMUSG00000103718	MGI:5594458	lncRNA gene	predicted gene, 35299
3	gene	67.57057	67.57282	negative	MGI_C57BL6J_1921179	4930402C01Rik	ENSEMBL:ENSMUSG00000104382	MGI:1921179	lncRNA gene	RIKEN cDNA 4930402C01 gene
3	gene	67.57316	67.57329	negative	MGI_C57BL6J_5455696	Gm25919	ENSEMBL:ENSMUSG00000077459	MGI:5455696	snoRNA gene	predicted gene, 25919
3	gene	67.58274	67.60424	positive	MGI_C57BL6J_1914118	Mfsd1	NCBI_Gene:66868,ENSEMBL:ENSMUSG00000027775	MGI:1914118	protein coding gene	major facilitator superfamily domain containing 1
3	pseudogene	67.60575	67.60785	negative	MGI_C57BL6J_3648243	Gm8515	NCBI_Gene:667207,ENSEMBL:ENSMUSG00000103206	MGI:3648243	pseudogene	predicted gene 8515
3	pseudogene	67.61978	67.62073	negative	MGI_C57BL6J_2685258	Gm412	NCBI_Gene:208424,ENSEMBL:ENSMUSG00000103606	MGI:2685258	pseudogene	predicted gene 412
3	pseudogene	67.68436	67.68475	negative	MGI_C57BL6J_5610829	Gm37601	ENSEMBL:ENSMUSG00000102746	MGI:5610829	pseudogene	predicted gene, 37601
3	pseudogene	67.74197	67.74330	negative	MGI_C57BL6J_5010902	Gm18717	NCBI_Gene:100417618,ENSEMBL:ENSMUSG00000104477	MGI:5010902	pseudogene	predicted gene, 18717
3	gene	67.75360	67.75565	positive	MGI_C57BL6J_5594566	Gm35407	NCBI_Gene:102638975	MGI:5594566	lncRNA gene	predicted gene, 35407
3	gene	67.75566	67.76628	positive	MGI_C57BL6J_5622953	Gm40068	NCBI_Gene:105244465	MGI:5622953	lncRNA gene	predicted gene, 40068
3	gene	67.89222	68.05659	positive	MGI_C57BL6J_3644166	Iqcj	NCBI_Gene:208426,ENSEMBL:ENSMUSG00000051777	MGI:3644166	protein coding gene	IQ motif containing J
3	gene	67.89222	68.62648	positive	MGI_C57BL6J_5439400	Iqschfp	NCBI_Gene:100505386,ENSEMBL:ENSMUSG00000102422	MGI:5439400	protein coding gene	Iqcj and Schip1 fusion protein
3	gene	68.06480	68.62648	positive	MGI_C57BL6J_1353557	Schip1	NCBI_Gene:30953,ENSEMBL:ENSMUSG00000027777	MGI:1353557	protein coding gene	schwannomin interacting protein 1
3	pseudogene	68.30377	68.31036	negative	MGI_C57BL6J_3648047	Gm5848	NCBI_Gene:545531	MGI:3648047	pseudogene	predicted pseudogene 5848
3	pseudogene	68.33319	68.33378	positive	MGI_C57BL6J_3642851	Gm10292	NCBI_Gene:631379,ENSEMBL:ENSMUSG00000102846	MGI:3642851	pseudogene	predicted gene 10292
3	gene	68.40778	68.41470	positive	MGI_C57BL6J_3641783	Gm10723	ENSEMBL:ENSMUSG00000103345	MGI:3641783	unclassified gene	predicted gene 10723
3	gene	68.54752	68.54771	negative	MGI_C57BL6J_5451850	Gm22073	ENSEMBL:ENSMUSG00000084617	MGI:5451850	snRNA gene	predicted gene, 22073
3	gene	68.69064	68.69855	positive	MGI_C57BL6J_96539	Il12a	NCBI_Gene:16159,ENSEMBL:ENSMUSG00000027776	MGI:96539	protein coding gene	interleukin 12a
3	pseudogene	68.73314	68.73808	positive	MGI_C57BL6J_3708676	Gm10040	ENSEMBL:ENSMUSG00000058360	MGI:3708676	pseudogene	predicted gene 10040
3	gene	68.75991	68.76143	negative	MGI_C57BL6J_1922468	4930535E02Rik	ENSEMBL:ENSMUSG00000102677	MGI:1922468	lncRNA gene	RIKEN cDNA 4930535E02 gene
3	gene	68.76136	68.76267	positive	MGI_C57BL6J_5594743	Gm35584	NCBI_Gene:102639225,ENSEMBL:ENSMUSG00000102936	MGI:5594743	lncRNA gene	predicted gene, 35584
3	pseudogene	68.84608	68.84741	positive	MGI_C57BL6J_3644317	Gm7270	NCBI_Gene:639530,ENSEMBL:ENSMUSG00000103218,ENSEMBL:ENSMUSG00000102853	MGI:3644317	pseudogene	predicted gene 7270
3	gene	68.86792	68.87027	negative	MGI_C57BL6J_4937275	Gm17641	ENSEMBL:ENSMUSG00000091272	MGI:4937275	protein coding gene	predicted gene, 17641
3	gene	68.86959	68.87216	positive	MGI_C57BL6J_1915975	1110032F04Rik	NCBI_Gene:68725,ENSEMBL:ENSMUSG00000046999	MGI:1915975	protein coding gene	RIKEN cDNA 1110032F04 gene
3	gene	68.89250	69.00464	negative	MGI_C57BL6J_1915509	Ift80	NCBI_Gene:68259,ENSEMBL:ENSMUSG00000027778	MGI:1915509	protein coding gene	intraflagellar transport 80
3	pseudogene	68.90017	68.90045	negative	MGI_C57BL6J_5313136	Gm20689	ENSEMBL:ENSMUSG00000093384	MGI:5313136	pseudogene	predicted gene 20689
3	pseudogene	68.90181	68.90216	positive	MGI_C57BL6J_5313137	Gm20690	ENSEMBL:ENSMUSG00000093730,ENSEMBL:ENSMUSG00000103007	MGI:5313137	pseudogene	predicted gene 20690
3	pseudogene	68.90216	68.90278	negative	MGI_C57BL6J_5010773	Gm18588	NCBI_Gene:100417394,ENSEMBL:ENSMUSG00000093402	MGI:5010773	pseudogene	predicted gene, 18588
3	pseudogene	68.90382	68.90415	negative	MGI_C57BL6J_5313138	Gm20691	ENSEMBL:ENSMUSG00000093505	MGI:5313138	pseudogene	predicted gene 20691
3	gene	68.91650	68.91732	negative	MGI_C57BL6J_6097561	Gm48183	ENSEMBL:ENSMUSG00000111756	MGI:6097561	unclassified gene	predicted gene, 48183
3	gene	69.00474	69.03462	positive	MGI_C57BL6J_1917349	Smc4	NCBI_Gene:70099,ENSEMBL:ENSMUSG00000034349	MGI:1917349	protein coding gene	structural maintenance of chromosomes 4
3	gene	69.00977	69.00983	positive	MGI_C57BL6J_2676842	Mir15b	miRBase:MI0000140,NCBI_Gene:387175,ENSEMBL:ENSMUSG00000065580	MGI:2676842	miRNA gene	microRNA 15b
3	gene	69.00990	69.01000	positive	MGI_C57BL6J_3618690	Mir16-2	miRBase:MI0000566,NCBI_Gene:723949,ENSEMBL:ENSMUSG00000065606	MGI:3618690	miRNA gene	microRNA 16-2
3	gene	69.03529	69.04640	negative	MGI_C57BL6J_1914199	Trim59	NCBI_Gene:66949,ENSEMBL:ENSMUSG00000034317	MGI:1914199	protein coding gene	tripartite motif-containing 59
3	gene	69.06065	69.06525	positive	MGI_C57BL6J_2442898	9630025H16Rik	NCBI_Gene:105244467	MGI:2442898	lncRNA gene	RIKEN cDNA 9630025H16 gene
3	gene	69.06715	69.12711	negative	MGI_C57BL6J_1100848	Kpna4	NCBI_Gene:16649,ENSEMBL:ENSMUSG00000027782	MGI:1100848	protein coding gene	karyopherin (importin) alpha 4
3	gene	69.08510	69.08545	negative	MGI_C57BL6J_5451786	Gm22009	ENSEMBL:ENSMUSG00000089417	MGI:5451786	snoRNA gene	predicted gene, 22009
3	gene	69.11974	69.12272	negative	MGI_C57BL6J_5610786	Gm37558	ENSEMBL:ENSMUSG00000103094	MGI:5610786	unclassified gene	predicted gene, 37558
3	gene	69.13123	69.15718	positive	MGI_C57BL6J_2686493	Gm1647	NCBI_Gene:381452,ENSEMBL:ENSMUSG00000094763	MGI:2686493	lncRNA gene	predicted gene 1647
3	gene	69.22242	69.22362	positive	MGI_C57BL6J_1918869	Arl14	NCBI_Gene:71619,ENSEMBL:ENSMUSG00000098207	MGI:1918869	protein coding gene	ADP-ribosylation factor-like 14
3	gene	69.25461	69.26383	positive	MGI_C57BL6J_5622955	Gm40070	NCBI_Gene:105244468	MGI:5622955	lncRNA gene	predicted gene, 40070
3	gene	69.31686	69.56080	positive	MGI_C57BL6J_2139740	Ppm1l	NCBI_Gene:242083,ENSEMBL:ENSMUSG00000027784	MGI:2139740	protein coding gene	protein phosphatase 1 (formerly 2C)-like
3	gene	69.31816	69.31929	negative	MGI_C57BL6J_1920514	1700037N05Rik	NA	NA	unclassified gene	RIKEN cDNA 1700037N05 gene
3	pseudogene	69.32001	69.32062	negative	MGI_C57BL6J_4938041	Gm17214	NCBI_Gene:100416279,ENSEMBL:ENSMUSG00000091315	MGI:4938041	pseudogene	predicted gene 17214
3	pseudogene	69.33519	69.33579	negative	MGI_C57BL6J_4938039	Gm17212	NCBI_Gene:100416280,ENSEMBL:ENSMUSG00000090941	MGI:4938039	pseudogene	predicted gene 17212
3	gene	69.37640	69.38370	positive	MGI_C57BL6J_2443158	A330078L11Rik	NA	NA	unclassified gene	RIKEN cDNA A330078L11 gene
3	pseudogene	69.43101	69.43238	negative	MGI_C57BL6J_4938040	Gm17213	NCBI_Gene:100417908,ENSEMBL:ENSMUSG00000090743	MGI:4938040	pseudogene	predicted gene 17213
3	pseudogene	69.56624	69.56747	negative	MGI_C57BL6J_3644126	Gm8565	NCBI_Gene:667309,ENSEMBL:ENSMUSG00000098006	MGI:3644126	pseudogene	predicted gene 8565
3	gene	69.57392	69.59896	negative	MGI_C57BL6J_1349405	B3galnt1	NCBI_Gene:26879,ENSEMBL:ENSMUSG00000043300	MGI:1349405	protein coding gene	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1
3	pseudogene	69.66177	69.66216	positive	MGI_C57BL6J_5610608	Gm37380	ENSEMBL:ENSMUSG00000102342	MGI:5610608	pseudogene	predicted gene, 37380
3	gene	69.68547	69.68558	positive	MGI_C57BL6J_5455398	Gm25621	ENSEMBL:ENSMUSG00000087848	MGI:5455398	rRNA gene	predicted gene, 25621
3	pseudogene	69.71694	69.71744	negative	MGI_C57BL6J_98039	Rpl32-ps	NCBI_Gene:19952,ENSEMBL:ENSMUSG00000068969	MGI:98039	pseudogene	ribosomal protein L32, pseudogene
3	gene	69.72199	69.75637	positive	MGI_C57BL6J_2140103	Nmd3	NCBI_Gene:97112,ENSEMBL:ENSMUSG00000027787	MGI:2140103	protein coding gene	NMD3 ribosome export adaptor
3	gene	69.75311	69.75637	positive	MGI_C57BL6J_2442565	9530051E23Rik	NA	NA	unclassified gene	RIKEN cDNA 9530051E23 gene
3	pseudogene	69.80846	69.80902	negative	MGI_C57BL6J_5011240	Gm19055	NCBI_Gene:100418175	MGI:5011240	pseudogene	predicted gene, 19055
3	gene	69.81954	69.85994	negative	MGI_C57BL6J_1913433	Sptssb	NCBI_Gene:66183,ENSEMBL:ENSMUSG00000043461	MGI:1913433	protein coding gene	serine palmitoyltransferase, small subunit B
3	gene	69.88247	69.88411	positive	MGI_C57BL6J_5594976	Gm35817	NCBI_Gene:102639522	MGI:5594976	lncRNA gene	predicted gene, 35817
3	pseudogene	69.95481	69.95568	negative	MGI_C57BL6J_5010080	Gm17895	NCBI_Gene:100416058,ENSEMBL:ENSMUSG00000103549	MGI:5010080	pseudogene	predicted gene, 17895
3	gene	69.96232	69.96245	negative	MGI_C57BL6J_5453261	Gm23484	ENSEMBL:ENSMUSG00000077366	MGI:5453261	snoRNA gene	predicted gene, 23484
3	pseudogene	69.96328	69.96347	positive	MGI_C57BL6J_5611012	Gm37784	ENSEMBL:ENSMUSG00000102525	MGI:5611012	pseudogene	predicted gene, 37784
3	gene	70.00761	70.02871	positive	MGI_C57BL6J_2685260	Otol1	NCBI_Gene:229389,ENSEMBL:ENSMUSG00000027788	MGI:2685260	protein coding gene	otolin 1
3	pseudogene	70.05975	70.06047	positive	MGI_C57BL6J_5610909	Gm37681	ENSEMBL:ENSMUSG00000103020	MGI:5610909	pseudogene	predicted gene, 37681
3	pseudogene	70.11625	70.11653	negative	MGI_C57BL6J_5610813	Gm37585	ENSEMBL:ENSMUSG00000103113	MGI:5610813	pseudogene	predicted gene, 37585
3	gene	70.22875	70.22887	negative	MGI_C57BL6J_5453254	Gm23477	ENSEMBL:ENSMUSG00000089507	MGI:5453254	snoRNA gene	predicted gene, 23477
3	pseudogene	70.41328	70.41388	positive	MGI_C57BL6J_3644892	Gm6631	NCBI_Gene:625868,ENSEMBL:ENSMUSG00000102663	MGI:3644892	pseudogene	predicted gene 6631
3	pseudogene	70.56626	70.56730	negative	MGI_C57BL6J_5610441	Gm37213	ENSEMBL:ENSMUSG00000104023	MGI:5610441	pseudogene	predicted gene, 37213
3	pseudogene	70.68909	70.68938	positive	MGI_C57BL6J_3642422	Gm10780	ENSEMBL:ENSMUSG00000074877	MGI:3642422	pseudogene	predicted gene 10780
3	gene	70.77238	70.80729	negative	MGI_C57BL6J_3643829	Gm6634	NCBI_Gene:625901,ENSEMBL:ENSMUSG00000097252	MGI:3643829	lncRNA gene	predicted gene 6634
3	pseudogene	71.40104	71.40155	negative	MGI_C57BL6J_3646556	Gm8599	NCBI_Gene:108168916,ENSEMBL:ENSMUSG00000102666	MGI:3646556	pseudogene	predicted gene 8599
3	pseudogene	71.46523	71.46567	negative	MGI_C57BL6J_5611533	Gm38305	ENSEMBL:ENSMUSG00000103396	MGI:5611533	pseudogene	predicted gene, 38305
3	pseudogene	71.67252	71.67712	positive	MGI_C57BL6J_5011379	Gm19194	NCBI_Gene:100418413,ENSEMBL:ENSMUSG00000103815	MGI:5011379	pseudogene	predicted gene, 19194
3	pseudogene	71.85918	71.86015	positive	MGI_C57BL6J_3643186	Gm8604	NCBI_Gene:667385,ENSEMBL:ENSMUSG00000098189	MGI:3643186	pseudogene	predicted gene 8604
3	pseudogene	71.89484	71.89499	positive	MGI_C57BL6J_5610845	Gm37617	ENSEMBL:ENSMUSG00000103465	MGI:5610845	pseudogene	predicted gene, 37617
3	pseudogene	72.00992	72.01046	negative	MGI_C57BL6J_5010416	Gm18231	NCBI_Gene:100416754	MGI:5010416	pseudogene	predicted gene, 18231
3	pseudogene	72.05000	72.05062	negative	MGI_C57BL6J_3781529	Gm3351	NCBI_Gene:100041459,ENSEMBL:ENSMUSG00000103279	MGI:3781529	pseudogene	predicted gene 3351
3	pseudogene	72.18074	72.18095	positive	MGI_C57BL6J_5610831	Gm37603	ENSEMBL:ENSMUSG00000103859	MGI:5610831	pseudogene	predicted gene, 37603
3	gene	72.31294	72.31303	positive	MGI_C57BL6J_5530847	Gm27465	ENSEMBL:ENSMUSG00000098869	MGI:5530847	unclassified non-coding RNA gene	predicted gene, 27465
3	pseudogene	72.60384	72.60435	negative	MGI_C57BL6J_5611129	Gm37901	ENSEMBL:ENSMUSG00000103078	MGI:5611129	pseudogene	predicted gene, 37901
3	gene	72.73783	72.73798	negative	MGI_C57BL6J_5452228	Gm22451	ENSEMBL:ENSMUSG00000084752	MGI:5452228	snRNA gene	predicted gene, 22451
3	gene	72.88855	72.96786	negative	MGI_C57BL6J_1917233	Sis	NCBI_Gene:69983,ENSEMBL:ENSMUSG00000027790	MGI:1917233	protein coding gene	sucrase isomaltase (alpha-glucosidase)
3	gene	73.04197	73.04384	negative	MGI_C57BL6J_5610284	Gm37056	ENSEMBL:ENSMUSG00000102753	MGI:5610284	unclassified gene	predicted gene, 37056
3	gene	73.04725	73.05788	negative	MGI_C57BL6J_2679447	Slitrk3	NCBI_Gene:386750,ENSEMBL:ENSMUSG00000048304	MGI:2679447	protein coding gene	SLIT and NTRK-like family, member 3
3	gene	73.06632	73.59483	positive	MGI_C57BL6J_5434110	Gm20754	NCBI_Gene:626082,ENSEMBL:ENSMUSG00000103428	MGI:5434110	lncRNA gene	predicted gene, 20754
3	gene	73.14685	73.14696	positive	MGI_C57BL6J_5454321	Gm24544	ENSEMBL:ENSMUSG00000077050	MGI:5454321	miRNA gene	predicted gene, 24544
3	gene	73.16409	73.16621	positive	MGI_C57BL6J_5610953	Gm37725	ENSEMBL:ENSMUSG00000102916	MGI:5610953	unclassified gene	predicted gene, 37725
3	gene	73.20770	73.20800	negative	MGI_C57BL6J_5452315	Gm22538	ENSEMBL:ENSMUSG00000088794	MGI:5452315	unclassified non-coding RNA gene	predicted gene, 22538
3	gene	73.32943	73.47001	positive	MGI_C57BL6J_5611581	Gm38353	ENSEMBL:ENSMUSG00000102820	MGI:5611581	lncRNA gene	predicted gene, 38353
3	gene	73.35121	73.48165	negative	MGI_C57BL6J_1921943	4930509J09Rik	NCBI_Gene:74693,ENSEMBL:ENSMUSG00000102362	MGI:1921943	lncRNA gene	RIKEN cDNA 4930509J09 gene
3	gene	73.63581	73.70844	negative	MGI_C57BL6J_894278	Bche	NCBI_Gene:12038,ENSEMBL:ENSMUSG00000027792	MGI:894278	protein coding gene	butyrylcholinesterase
3	pseudogene	73.93305	73.93412	positive	MGI_C57BL6J_3644686	Gm8625	NCBI_Gene:667425,ENSEMBL:ENSMUSG00000102859	MGI:3644686	pseudogene	predicted gene 8625
3	gene	74.00922	74.01728	negative	MGI_C57BL6J_5012541	Gm20356	NCBI_Gene:100504692,ENSEMBL:ENSMUSG00000104096	MGI:5012541	lncRNA gene	predicted gene, 20356
3	gene	74.10541	74.12645	negative	MGI_C57BL6J_5595228	Gm36069	NCBI_Gene:102639855	MGI:5595228	lncRNA gene	predicted gene, 36069
3	pseudogene	74.24226	74.29687	negative	MGI_C57BL6J_3779552	Gm6098	NCBI_Gene:100861784,ENSEMBL:ENSMUSG00000096400	MGI:3779552	pseudogene	predicted gene 6098
3	pseudogene	74.32353	74.32399	negative	MGI_C57BL6J_5610278	Gm37050	ENSEMBL:ENSMUSG00000104227	MGI:5610278	pseudogene	predicted gene, 37050
3	pseudogene	74.81472	74.81534	positive	MGI_C57BL6J_3647458	Gm8643	NCBI_Gene:108168917,ENSEMBL:ENSMUSG00000102809	MGI:3647458	pseudogene	predicted gene 8643
3	gene	75.02240	75.02461	negative	MGI_C57BL6J_5610692	Gm37464	ENSEMBL:ENSMUSG00000102420	MGI:5610692	unclassified gene	predicted gene, 37464
3	gene	75.03790	75.16505	negative	MGI_C57BL6J_2674085	Zbbx	NCBI_Gene:213234,ENSEMBL:ENSMUSG00000034151	MGI:2674085	protein coding gene	zinc finger, B-box domain containing
3	gene	75.16506	75.20808	positive	MGI_C57BL6J_5622956	Gm40071	NCBI_Gene:105244469	MGI:5622956	lncRNA gene	predicted gene, 40071
3	gene	75.24236	75.27008	negative	MGI_C57BL6J_1915181	Serpini2	NCBI_Gene:67931,ENSEMBL:ENSMUSG00000034139	MGI:1915181	protein coding gene	serine (or cysteine) peptidase inhibitor, clade I, member 2
3	gene	75.27393	75.48216	negative	MGI_C57BL6J_3645287	Wdr49	NCBI_Gene:213248,ENSEMBL:ENSMUSG00000104301	MGI:3645287	protein coding gene	WD repeat domain 49
3	pseudogene	75.39132	75.39264	positive	MGI_C57BL6J_5010021	Gm17836	NCBI_Gene:100415953,ENSEMBL:ENSMUSG00000103444	MGI:5010021	pseudogene	predicted gene, 17836
3	gene	75.51649	75.55686	negative	MGI_C57BL6J_1928396	Pdcd10	NCBI_Gene:56426,ENSEMBL:ENSMUSG00000027835	MGI:1928396	protein coding gene	programmed cell death 10
3	gene	75.55753	75.64350	positive	MGI_C57BL6J_1194506	Serpini1	NCBI_Gene:20713,ENSEMBL:ENSMUSG00000027834	MGI:1194506	protein coding gene	serine (or cysteine) peptidase inhibitor, clade I, member 1
3	gene	75.61935	75.62336	positive	MGI_C57BL6J_5610900	Gm37672	ENSEMBL:ENSMUSG00000102625	MGI:5610900	unclassified gene	predicted gene, 37672
3	gene	75.64744	75.65573	negative	MGI_C57BL6J_1916443	Platr10	NCBI_Gene:69193,ENSEMBL:ENSMUSG00000099370	MGI:1916443	lncRNA gene	pluripotency associated transcript 10
3	gene	75.69895	75.69946	negative	MGI_C57BL6J_5610421	Gm37193	ENSEMBL:ENSMUSG00000102188	MGI:5610421	unclassified gene	predicted gene, 37193
3	gene	75.71479	75.71492	positive	MGI_C57BL6J_5455623	Gm25846	ENSEMBL:ENSMUSG00000088638	MGI:5455623	snoRNA gene	predicted gene, 25846
3	gene	75.74820	75.78765	positive	MGI_C57BL6J_5579839	Gm29133	ENSEMBL:ENSMUSG00000100962	MGI:5579839	protein coding gene	predicted gene 29133
3	gene	75.87508	75.95695	negative	MGI_C57BL6J_1920374	Golim4	NCBI_Gene:73124,ENSEMBL:ENSMUSG00000034109	MGI:1920374	protein coding gene	golgi integral membrane protein 4
3	gene	75.95212	75.95430	positive	MGI_C57BL6J_5610913	Gm37685	ENSEMBL:ENSMUSG00000103024	MGI:5610913	unclassified gene	predicted gene, 37685
3	gene	75.95610	76.00114	positive	MGI_C57BL6J_5610484	Gm37256	ENSEMBL:ENSMUSG00000104448	MGI:5610484	lncRNA gene	predicted gene, 37256
3	pseudogene	76.04092	76.04172	negative	MGI_C57BL6J_5010613	Gm18428	NCBI_Gene:100417155,ENSEMBL:ENSMUSG00000104223	MGI:5010613	pseudogene	predicted gene, 18428
3	gene	76.07427	76.71002	positive	MGI_C57BL6J_2442179	Fstl5	NCBI_Gene:213262,ENSEMBL:ENSMUSG00000034098	MGI:2442179	protein coding gene	follistatin-like 5
3	gene	76.54669	76.55025	positive	MGI_C57BL6J_5611125	Gm37897	ENSEMBL:ENSMUSG00000103920	MGI:5611125	unclassified gene	predicted gene, 37897
3	pseudogene	76.82206	76.82240	positive	MGI_C57BL6J_5610518	Gm37290	ENSEMBL:ENSMUSG00000103702	MGI:5610518	pseudogene	predicted gene, 37290
3	pseudogene	76.88450	76.88533	positive	MGI_C57BL6J_5011416	Gm19231	NCBI_Gene:100418471,ENSEMBL:ENSMUSG00000102216	MGI:5011416	pseudogene	predicted gene, 19231
3	gene	77.10521	77.10528	negative	MGI_C57BL6J_5453421	Gm23644	ENSEMBL:ENSMUSG00000088481	MGI:5453421	snoRNA gene	predicted gene, 23644
3	pseudogene	77.56081	77.56394	negative	MGI_C57BL6J_2674154	Dnmt3a-ps1	NCBI_Gene:445261,ENSEMBL:ENSMUSG00000102489	MGI:2674154	pseudogene	DNA methyltransferase 3A, pseudogene 1
3	gene	77.56496	77.57134	negative	MGI_C57BL6J_5611034	Gm37806	ENSEMBL:ENSMUSG00000103849	MGI:5611034	unclassified gene	predicted gene, 37806
3	pseudogene	77.69137	77.69223	negative	MGI_C57BL6J_5010480	Gm18295	NCBI_Gene:100416866	MGI:5010480	pseudogene	predicted gene, 18295
3	gene	77.70289	77.70439	negative	MGI_C57BL6J_5611423	Gm38195	ENSEMBL:ENSMUSG00000102872	MGI:5611423	unclassified gene	predicted gene, 38195
3	pseudogene	77.87278	77.87315	negative	MGI_C57BL6J_5610804	Gm37576	ENSEMBL:ENSMUSG00000102393	MGI:5610804	pseudogene	predicted gene, 37576
3	pseudogene	77.96138	77.96280	positive	MGI_C57BL6J_5010904	Gm18719	NCBI_Gene:100417620,ENSEMBL:ENSMUSG00000105026	MGI:5010904	pseudogene	predicted gene, 18719
3	pseudogene	78.00646	78.00698	positive	MGI_C57BL6J_3648953	Gm6677	NCBI_Gene:626461,ENSEMBL:ENSMUSG00000103312	MGI:3648953	pseudogene	predicted gene 6677
3	pseudogene	78.08583	78.08740	negative	MGI_C57BL6J_3643677	Gm8684	NCBI_Gene:667526,ENSEMBL:ENSMUSG00000102637	MGI:3643677	pseudogene	predicted gene 8684
3	pseudogene	78.13446	78.13558	positive	MGI_C57BL6J_3645908	Gm6680	NCBI_Gene:626479,ENSEMBL:ENSMUSG00000103817	MGI:3645908	pseudogene	predicted gene 6680
3	gene	78.40430	78.40594	negative	MGI_C57BL6J_5663463	Gm43326	ENSEMBL:ENSMUSG00000104782	MGI:5663463	unclassified gene	predicted gene 43326
3	gene	78.40616	78.41077	negative	MGI_C57BL6J_5595447	Gm36288	NCBI_Gene:102640153	MGI:5595447	lncRNA gene	predicted gene, 36288
3	pseudogene	78.48658	78.48868	negative	MGI_C57BL6J_3705708	Gm15442	NCBI_Gene:100041691,ENSEMBL:ENSMUSG00000084370	MGI:3705708	pseudogene	predicted gene 15442
3	pseudogene	78.75862	78.75946	positive	MGI_C57BL6J_5011137	Gm18952	NCBI_Gene:100418022,ENSEMBL:ENSMUSG00000102341	MGI:5011137	pseudogene	predicted gene, 18952
3	gene	78.78973	78.79223	negative	MGI_C57BL6J_5595500	Gm36341	NCBI_Gene:102640221	MGI:5595500	lncRNA gene	predicted gene, 36341
3	gene	78.84222	78.84257	positive	MGI_C57BL6J_5454526	Gm24749	ENSEMBL:ENSMUSG00000088463	MGI:5454526	unclassified non-coding RNA gene	predicted gene, 24749
3	pseudogene	78.86489	78.86557	negative	MGI_C57BL6J_5010138	Gm17953	NCBI_Gene:100416167,ENSEMBL:ENSMUSG00000102438	MGI:5010138	pseudogene	predicted gene, 17953
3	pseudogene	78.89183	78.89247	negative	MGI_C57BL6J_3646590	Gm5277	NCBI_Gene:383883,ENSEMBL:ENSMUSG00000091361	MGI:3646590	pseudogene	predicted gene 5277
3	pseudogene	78.91724	78.91846	positive	MGI_C57BL6J_3641638	Gm10291	NCBI_Gene:100041748,ENSEMBL:ENSMUSG00000070443	MGI:3641638	pseudogene	predicted pseudogene 10291
3	gene	78.91846	78.93631	negative	MGI_C57BL6J_5621427	Gm38542	NCBI_Gene:102641233	MGI:5621427	lncRNA gene	predicted gene, 38542
3	pseudogene	78.96549	78.96715	negative	MGI_C57BL6J_3704220	Gm9762	NCBI_Gene:100041766,ENSEMBL:ENSMUSG00000037096	MGI:3704220	pseudogene	predicted pseudogene 9762
3	gene	78.97992	78.98005	positive	MGI_C57BL6J_5453217	Gm23440	ENSEMBL:ENSMUSG00000077487	MGI:5453217	snoRNA gene	predicted gene, 23440
3	gene	79.06251	79.28724	negative	MGI_C57BL6J_2659071	Rapgef2	NCBI_Gene:76089,ENSEMBL:ENSMUSG00000062232	MGI:2659071	protein coding gene	Rap guanine nucleotide exchange factor (GEF) 2
3	gene	79.19637	79.19648	positive	MGI_C57BL6J_5453927	Gm24150	ENSEMBL:ENSMUSG00000064693	MGI:5453927	snRNA gene	predicted gene, 24150
3	gene	79.21292	79.25391	positive	MGI_C57BL6J_1918174	4921511C10Rik	NCBI_Gene:70924,ENSEMBL:ENSMUSG00000104585	MGI:1918174	lncRNA gene	RIKEN cDNA 4921511C10 gene
3	gene	79.23228	79.23413	negative	MGI_C57BL6J_2443462	B930012P20Rik	NA	NA	unclassified gene	RIKEN cDNA B930012P20 gene
3	gene	79.28717	79.28985	positive	MGI_C57BL6J_2686494	6430573P05Rik	ENSEMBL:ENSMUSG00000102545	MGI:2686494	lncRNA gene	RIKEN cDNA 6430573P05 gene
3	gene	79.33420	79.33658	negative	MGI_C57BL6J_5622957	Gm40072	NCBI_Gene:105244470	MGI:5622957	lncRNA gene	predicted gene, 40072
3	gene	79.33666	79.46413	positive	MGI_C57BL6J_4936993	Gm17359	NCBI_Gene:100233207,ENSEMBL:ENSMUSG00000091685	MGI:4936993	protein coding gene	predicted gene, 17359
3	gene	79.45597	79.56780	negative	MGI_C57BL6J_2683054	Fnip2	NCBI_Gene:329679,ENSEMBL:ENSMUSG00000061175	MGI:2683054	protein coding gene	folliculin interacting protein 2
3	gene	79.50979	79.51210	negative	MGI_C57BL6J_5595601	Gm36442	NCBI_Gene:102640362	MGI:5595601	lncRNA gene	predicted gene, 36442
3	gene	79.55131	79.55219	negative	MGI_C57BL6J_3781690	Gm3513	ENSEMBL:ENSMUSG00000089746	MGI:3781690	lncRNA gene	predicted gene 3513
3	gene	79.56819	79.57332	positive	MGI_C57BL6J_1923129	4930589L23Rik	NCBI_Gene:75879,ENSEMBL:ENSMUSG00000068957	MGI:1923129	lncRNA gene	RIKEN cDNA 4930589L23 gene
3	pseudogene	79.58259	79.58323	positive	MGI_C57BL6J_5594226	Gm35067	ENSEMBL:ENSMUSG00000103564	MGI:5594226	pseudogene	predicted gene, 35067
3	gene	79.59134	79.60365	positive	MGI_C57BL6J_1914988	Ppid	NCBI_Gene:67738,ENSEMBL:ENSMUSG00000027804	MGI:1914988	protein coding gene	peptidylprolyl isomerase D (cyclophilin D)
3	gene	79.60379	79.62950	negative	MGI_C57BL6J_106100	Etfdh	NCBI_Gene:66841,ENSEMBL:ENSMUSG00000027809	MGI:106100	protein coding gene	electron transferring flavoprotein, dehydrogenase
3	gene	79.61054	79.61183	negative	MGI_C57BL6J_5611201	Gm37973	ENSEMBL:ENSMUSG00000102370	MGI:5611201	unclassified gene	predicted gene, 37973
3	gene	79.62908	79.63282	positive	MGI_C57BL6J_1923189	4930579G24Rik	NCBI_Gene:75939,ENSEMBL:ENSMUSG00000027811	MGI:1923189	protein coding gene	RIKEN cDNA 4930579G24 gene
3	gene	79.64160	79.73795	negative	MGI_C57BL6J_2682211	Rxfp1	NCBI_Gene:381489,ENSEMBL:ENSMUSG00000034009	MGI:2682211	protein coding gene	relaxin/insulin-like family peptide receptor 1
3	gene	79.67337	79.67688	negative	MGI_C57BL6J_5504099	Gm26984	ENSEMBL:ENSMUSG00000098204	MGI:5504099	lncRNA gene	predicted gene, 26984
3	gene	79.81256	79.85279	negative	MGI_C57BL6J_1917902	Tmem144	NCBI_Gene:70652,ENSEMBL:ENSMUSG00000027956	MGI:1917902	protein coding gene	transmembrane protein 144
3	gene	79.83493	79.83504	positive	MGI_C57BL6J_5456197	Gm26420	ENSEMBL:ENSMUSG00000077461	MGI:5456197	snRNA gene	predicted gene, 26420
3	gene	79.85287	79.85666	positive	MGI_C57BL6J_5622958	Gm40073	NCBI_Gene:105244471	MGI:5622958	lncRNA gene	predicted gene, 40073
3	gene	79.85929	79.88681	negative	MGI_C57BL6J_5595728	Gm36569	NCBI_Gene:102640530,ENSEMBL:ENSMUSG00000102191	MGI:5595728	lncRNA gene	predicted gene, 36569
3	gene	79.88447	79.94628	positive	MGI_C57BL6J_1915909	Gask1b	NCBI_Gene:68659,ENSEMBL:ENSMUSG00000027955	MGI:1915909	protein coding gene	golgi associated kinase 1B
3	gene	80.05489	80.21309	positive	MGI_C57BL6J_2685464	A330069K06Rik	NCBI_Gene:213544,ENSEMBL:ENSMUSG00000103181	MGI:2685464	lncRNA gene	RIKEN cDNA A330069K06 gene
3	gene	80.05987	80.10161	positive	MGI_C57BL6J_5622959	Gm40074	NCBI_Gene:105244472	MGI:5622959	lncRNA gene	predicted gene, 40074
3	pseudogene	80.08808	80.08916	negative	MGI_C57BL6J_5011251	Gm19066	NCBI_Gene:100418193,ENSEMBL:ENSMUSG00000103193	MGI:5011251	pseudogene	predicted gene, 19066
3	gene	80.13413	80.13646	positive	MGI_C57BL6J_5663976	Gm43839	ENSEMBL:ENSMUSG00000105307	MGI:5663976	unclassified gene	predicted gene 43839
3	pseudogene	80.19448	80.19463	negative	MGI_C57BL6J_5611523	Gm38295	ENSEMBL:ENSMUSG00000103154	MGI:5611523	pseudogene	predicted gene, 38295
3	gene	80.20249	80.20560	negative	MGI_C57BL6J_5611120	Gm37892	ENSEMBL:ENSMUSG00000103929	MGI:5611120	lncRNA gene	predicted gene, 37892
3	gene	80.28512	80.33459	negative	MGI_C57BL6J_5611199	Gm37971	ENSEMBL:ENSMUSG00000102379	MGI:5611199	lncRNA gene	predicted gene, 37971
3	pseudogene	80.39935	80.39967	negative	MGI_C57BL6J_3644992	Gm6706	ENSEMBL:ENSMUSG00000087123	MGI:3644992	pseudogene	predicted gene 6706
3	gene	80.68145	80.80320	negative	MGI_C57BL6J_95809	Gria2	NCBI_Gene:14800,ENSEMBL:ENSMUSG00000033981	MGI:95809	protein coding gene	glutamate receptor, ionotropic, AMPA2 (alpha 2)
3	gene	80.69220	80.69231	negative	MGI_C57BL6J_5455526	Gm25749	ENSEMBL:ENSMUSG00000093226	MGI:5455526	miRNA gene	predicted gene, 25749
3	gene	80.84315	80.84355	negative	MGI_C57BL6J_1920346	2900092N11Rik	NA	NA	unclassified gene	RIKEN cDNA 2900092N11 gene
3	gene	80.84360	80.91366	negative	MGI_C57BL6J_95751	Glrb	NCBI_Gene:14658,ENSEMBL:ENSMUSG00000028020	MGI:95751	protein coding gene	glycine receptor, beta subunit
3	pseudogene	80.88509	80.88699	positive	MGI_C57BL6J_5010730	Gm18545	NCBI_Gene:100417342	MGI:5010730	pseudogene	predicted gene, 18545
3	gene	80.96296	80.97163	positive	MGI_C57BL6J_5662605	Gm42468	ENSEMBL:ENSMUSG00000105092	MGI:5662605	lncRNA gene	predicted gene 42468
3	pseudogene	80.99156	81.00159	positive	MGI_C57BL6J_5588967	Gm29808	NCBI_Gene:101056241,ENSEMBL:ENSMUSG00000103419	MGI:5588967	pseudogene	predicted gene, 29808
3	gene	81.03295	81.03377	positive	MGI_C57BL6J_5662613	Gm42476	ENSEMBL:ENSMUSG00000106293	MGI:5662613	lncRNA gene	predicted gene 42476
3	gene	81.03589	81.21404	positive	MGI_C57BL6J_1859631	Pdgfc	NCBI_Gene:54635,ENSEMBL:ENSMUSG00000028019	MGI:1859631	protein coding gene	platelet-derived growth factor, C polypeptide
3	gene	81.03741	81.04044	negative	MGI_C57BL6J_3801866	Gm16000	ENSEMBL:ENSMUSG00000085106	MGI:3801866	lncRNA gene	predicted gene 16000
3	pseudogene	81.40529	81.40557	negative	MGI_C57BL6J_5610528	Gm37300	ENSEMBL:ENSMUSG00000102223	MGI:5610528	pseudogene	predicted gene, 37300

Additive covariates

operm <- scan1perm(pr.qc, covars["rz.age"], model="normal", addcovar=addcovar, n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	3.280959	2.920650
0.05	2.960863	2.717509
0.1	2.560206	2.456666

#summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, gm$gmap, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i]," - ICI vs. EOI (with additive covariates)"))
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}


print("with no kinship")

[1] “with no kinship”

outfa <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar)

plot_lod(outfa,gm$gmap)

print("with normal kinship")

[1] “with normal kinship”

outka <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, kinship=kinship)

plot_lod(outka,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

outa <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, kinship=K)

plot_lod(outa,gm$gmap)

out = outa

peaks<-find_peaks(out, gm$gmap, threshold=2, drop=1.5)

rownames(peaks) <- NULL
peaks[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	rz.age	1	4.24	2.292415	1.562	11.228

peaks_mbl <- list()
#corresponding info in Mb
for(i in 1:nrow(peaks)){
  lodindex <- peaks$lodindex[i]
  lodcolumn <- peaks$lodcolumn[i]
  chr <- as.character(peaks$chr[i])
  lod <- peaks$lod[i]
  mark <- find_marker(gm$gmap, chr=chr,pos=peaks$pos[i])
  pos <- mapdf[mapdf$marker==mark,]$pmapdf
  ci_lo <- mapdfnd$pmapdf[which(mapdfnd$gmapdf == peaks$ci_lo[i] & mapdfnd$chr == peaks$chr[i])]
  ci_hi <- mapdfnd$pmapdf[which(mapdfnd$gmapdf == peaks$ci_hi[i] & mapdfnd$chr == peaks$chr[i])]
  peaks_mb=cbind(lodindex, lodcolumn, chr, pos, lod, ci_lo, ci_hi)
  peaks_mbl[[i]] <- peaks_mb
}
peaks_mba <- do.call(rbind, peaks_mbl)
peaks_mba <- as.data.frame(peaks_mba)
#peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")] <- sapply(peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")], as.numeric)

rownames(peaks_mba) <- NULL
peaks_mba[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	rz.age	1	13.781683	2.29241520382263	3.135418	29.024924

for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  marker = find_marker(gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i])
  #g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE, minprob = 0.5)
  gp <- g[,marker]
  gp[gp==1] <- "AA"
  gp[gp==2] <- "AB"
  gp[gp==0] <- NA
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(gp, covars[,peaks$lodcolumn[i]], ylab=peaks$lodcolumn[i], sort=FALSE)
  title(main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  coeff <- scan1coef(pr.qc[,chr], covars[peaks$lodcolumn[i]], addcovar=addcovar, kinship=K[[chr]])
  blup <- scan1blup(pr.qc[,chr], covars[peaks$lodcolumn[i]], addcovar=addcovar, kinship=K[[chr]])

  #plot_coef(coeff, 
  #     gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i]," [scan1coeff])")
  #     )

  plot_coef(blup, 
       gm$gmap[chr], columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i]," [scan1blup])")
       )
  #last_coef <- unclass(coeff)[nrow(coeff),1:3]
  #for(t in seq(along=last_coef))
  #axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], covars[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], covars[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))

  
}

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
1	gene	3.199733	3.672278	negative	MGI_C57BL6J_3528744	Xkr4	NCBI_Gene:497097,ENSEMBL:ENSMUSG00000051951	MGI:3528744	protein coding gene	X-linked Kx blood group related 4
1	pseudogene	3.252734	3.253236	positive	MGI_C57BL6J_5011141	Gm18956	NCBI_Gene:100418032,ENSEMBL:ENSMUSG00000102851	MGI:5011141	pseudogene	predicted gene, 18956
1	gene	3.361552	3.377812	positive	MGI_C57BL6J_5622470	Gm39585	NCBI_Gene:105243853	MGI:5622470	lncRNA gene	predicted gene, 39585
1	gene	3.365731	3.368549	negative	MGI_C57BL6J_5610408	Gm37180	ENSEMBL:ENSMUSG00000103377	MGI:5610408	unclassified gene	predicted gene, 37180
1	gene	3.375556	3.377788	negative	MGI_C57BL6J_5610591	Gm37363	ENSEMBL:ENSMUSG00000104017	MGI:5610591	unclassified gene	predicted gene, 37363
1	gene	3.464977	3.467285	negative	MGI_C57BL6J_5610914	Gm37686	ENSEMBL:ENSMUSG00000103025	MGI:5610914	unclassified gene	predicted gene, 37686
1	gene	3.466587	3.513553	positive	MGI_C57BL6J_3780162	Gm1992	ENSEMBL:ENSMUSG00000089699	MGI:3780162	lncRNA gene	predicted gene 1992
1	gene	3.512451	3.514507	negative	MGI_C57BL6J_5610557	Gm37329	ENSEMBL:ENSMUSG00000103201	MGI:5610557	unclassified gene	predicted gene, 37329
1	pseudogene	3.531795	3.532736	positive	MGI_C57BL6J_3648497	Gm7341	NCBI_Gene:664792,ENSEMBL:ENSMUSG00000103147	MGI:3648497	pseudogene	predicted gene 7341
1	gene	3.592892	3.595903	negative	MGI_C57BL6J_5611376	Gm38148	ENSEMBL:ENSMUSG00000103161	MGI:5611376	unclassified gene	predicted gene, 38148
1	gene	3.647309	3.658904	negative	MGI_C57BL6J_5012123	Gm19938	ENSEMBL:ENSMUSG00000102331	MGI:5012123	lncRNA gene	predicted gene, 19938
1	gene	3.680155	3.681788	positive	MGI_C57BL6J_3642703	Gm10568	ENSEMBL:ENSMUSG00000102348	MGI:3642703	unclassified gene	predicted gene 10568
1	gene	3.752010	3.754360	positive	MGI_C57BL6J_5611613	Gm38385	ENSEMBL:ENSMUSG00000102592	MGI:5611613	unclassified gene	predicted gene, 38385
1	gene	3.783876	3.783933	negative	MGI_C57BL6J_5530778	Gm27396	ENSEMBL:ENSMUSG00000088333	MGI:5530778	snRNA gene	predicted gene, 27396
1	gene	3.905739	3.986215	negative	MGI_C57BL6J_5610609	Gm37381	ENSEMBL:ENSMUSG00000102343	MGI:5610609	lncRNA gene	predicted gene, 37381
1	gene	3.999557	4.409266	negative	MGI_C57BL6J_1341105	Rp1	NCBI_Gene:19888,ENSEMBL:ENSMUSG00000025900	MGI:1341105	protein coding gene	retinitis pigmentosa 1 (human)
1	gene	4.115673	4.243365	negative	MGI_C57BL6J_5621602	Gm38717	NCBI_Gene:105242467	MGI:5621602	protein coding gene	predicted gene, 38717
1	pseudogene	4.256234	4.261541	negative	MGI_C57BL6J_3644986	Gm6101	NCBI_Gene:619785,ENSEMBL:ENSMUSG00000102948	MGI:3644986	pseudogene	predicted gene 6101
1	gene	4.363346	4.364829	negative	MGI_C57BL6J_5610711	Gm37483	ENSEMBL:ENSMUSG00000104123	MGI:5610711	unclassified gene	predicted gene, 37483
1	gene	4.490928	4.497386	negative	MGI_C57BL6J_107543	Sox17	NCBI_Gene:20671,ENSEMBL:ENSMUSG00000025902	MGI:107543	protein coding gene	SRY (sex determining region Y)-box 17
1	gene	4.496551	4.499558	positive	MGI_C57BL6J_5610815	Gm37587	ENSEMBL:ENSMUSG00000104238	MGI:5610815	lncRNA gene	predicted gene, 37587
1	pseudogene	4.522817	4.526931	positive	MGI_C57BL6J_3643257	Gm7357	NCBI_Gene:664830,ENSEMBL:ENSMUSG00000102269	MGI:3643257	pseudogene	predicted gene 7357
1	gene	4.529017	4.529123	positive	MGI_C57BL6J_5452084	Gm22307	ENSEMBL:ENSMUSG00000096126	MGI:5452084	snRNA gene	predicted gene, 22307
1	pseudogene	4.534837	4.535286	negative	MGI_C57BL6J_5611304	Gm38076	ENSEMBL:ENSMUSG00000103003	MGI:5611304	pseudogene	predicted gene, 38076
1	gene	4.583127	4.608781	negative	MGI_C57BL6J_5610551	Gm37323	NCBI_Gene:108167609,ENSEMBL:ENSMUSG00000104328	MGI:5610551	lncRNA gene	predicted gene, 37323
1	gene	4.595057	4.602832	positive	MGI_C57BL6J_5622471	Gm39586	NCBI_Gene:105243854	MGI:5622471	lncRNA gene	predicted gene, 39586
1	gene	4.603255	4.606521	negative	MGI_C57BL6J_5825719	Gm46082	NCBI_Gene:108167610	MGI:5825719	lncRNA gene	predicted gene, 46082
1	gene	4.608937	4.617805	positive	MGI_C57BL6J_5589033	Gm29874	NCBI_Gene:102631571	MGI:5589033	lncRNA gene	predicted gene, 29874
1	pseudogene	4.610244	4.611629	positive	MGI_C57BL6J_3643485	Gm7369	NCBI_Gene:664853,ENSEMBL:ENSMUSG00000102735	MGI:3643485	pseudogene	predicted gene 7369
1	pseudogene	4.687934	4.689409	negative	MGI_C57BL6J_3646770	Gm6085	NCBI_Gene:619596,ENSEMBL:ENSMUSG00000098104	MGI:3646770	pseudogene	predicted gene 6085
1	pseudogene	4.692219	4.693424	negative	MGI_C57BL6J_3644547	Gm6119	NCBI_Gene:619980,ENSEMBL:ENSMUSG00000102175	MGI:3644547	pseudogene	predicted gene 6119
1	gene	4.723277	4.723379	negative	MGI_C57BL6J_5455270	Gm25493	ENSEMBL:ENSMUSG00000088000	MGI:5455270	snRNA gene	predicted gene, 25493
1	pseudogene	4.735046	4.735679	negative	MGI_C57BL6J_3780221	Gm2053	NCBI_Gene:100039121,ENSEMBL:ENSMUSG00000103265	MGI:3780221	pseudogene	predicted gene 2053
1	pseudogene	4.771105	4.772393	positive	MGI_C57BL6J_3647047	Gm6123	NCBI_Gene:620009,ENSEMBL:ENSMUSG00000103922	MGI:3647047	pseudogene	predicted gene 6123
1	gene	4.773198	4.785749	negative	MGI_C57BL6J_1351639	Mrpl15	NCBI_Gene:27395,ENSEMBL:ENSMUSG00000033845	MGI:1351639	protein coding gene	mitochondrial ribosomal protein L15
1	gene	4.778063	4.779212	negative	MGI_C57BL6J_5610372	Gm37144	ENSEMBL:ENSMUSG00000102275	MGI:5610372	unclassified gene	predicted gene, 37144
1	gene	4.807560	4.848410	positive	MGI_C57BL6J_1344588	Lypla1	NCBI_Gene:18777,ENSEMBL:ENSMUSG00000025903	MGI:1344588	protein coding gene	lysophospholipase 1
1	gene	4.807892	4.886770	positive	MGI_C57BL6J_5611216	Gm37988	ENSEMBL:ENSMUSG00000104217	MGI:5611216	protein coding gene	predicted gene, 37988
1	gene	4.857694	4.897909	positive	MGI_C57BL6J_1196624	Tcea1	NCBI_Gene:21399,ENSEMBL:ENSMUSG00000033813	MGI:1196624	protein coding gene	transcription elongation factor A (SII) 1
1	pseudogene	4.879202	4.880747	negative	MGI_C57BL6J_3648587	Gm6104	NCBI_Gene:619829,ENSEMBL:ENSMUSG00000062588	MGI:3648587	pseudogene	predicted gene 6104
1	gene	4.905751	4.906861	negative	MGI_C57BL6J_5610505	Gm37277	ENSEMBL:ENSMUSG00000103280	MGI:5610505	unclassified gene	predicted gene, 37277
1	gene	4.909573	5.070308	negative	MGI_C57BL6J_1929866	Rgs20	NCBI_Gene:58175,ENSEMBL:ENSMUSG00000002459	MGI:1929866	protein coding gene	regulator of G-protein signaling 20
1	pseudogene	4.927028	4.927299	negative	MGI_C57BL6J_4937927	Gm17100	ENSEMBL:ENSMUSG00000091305	MGI:4937927	pseudogene	predicted gene 17100
1	gene	4.938576	4.940710	negative	MGI_C57BL6J_5610307	Gm37079	ENSEMBL:ENSMUSG00000102653	MGI:5610307	unclassified gene	predicted gene, 37079
1	gene	4.968430	4.977005	positive	MGI_C57BL6J_3801909	Gm16041	NCBI_Gene:102631647,ENSEMBL:ENSMUSG00000085623	MGI:3801909	lncRNA gene	predicted gene 16041
1	pseudogene	5.063060	5.064658	positive	MGI_C57BL6J_4937928	Gm17101	NCBI_Gene:100417473,ENSEMBL:ENSMUSG00000091665	MGI:4937928	pseudogene	predicted gene 17101
1	gene	5.070018	5.163213	positive	MGI_C57BL6J_1914864	Atp6v1h	NCBI_Gene:108664,ENSEMBL:ENSMUSG00000033793	MGI:1914864	protein coding gene	ATPase, H+ transporting, lysosomal V1 subunit H
1	gene	5.156597	5.158506	positive	MGI_C57BL6J_2443922	B230334L07Rik	NA	NA	unclassified gene	RIKEN cDNA B230334L07 gene
1	pseudogene	5.276106	5.277337	negative	MGI_C57BL6J_3644877	Gm7182	NCBI_Gene:636659,ENSEMBL:ENSMUSG00000104352	MGI:3644877	pseudogene	predicted gene 7182
1	gene	5.307739	5.310017	positive	MGI_C57BL6J_5610795	Gm37567	ENSEMBL:ENSMUSG00000104046	MGI:5610795	unclassified gene	predicted gene, 37567
1	pseudogene	5.319710	5.320327	negative	MGI_C57BL6J_5011255	Gm19070	NCBI_Gene:100418201	MGI:5011255	pseudogene	predicted gene, 19070
1	gene	5.403547	5.405578	positive	MGI_C57BL6J_5611492	Gm38264	ENSEMBL:ENSMUSG00000102907	MGI:5611492	unclassified gene	predicted gene, 38264
1	gene	5.588450	5.606134	positive	MGI_C57BL6J_97439	Oprk1	NCBI_Gene:18387,ENSEMBL:ENSMUSG00000025905	MGI:97439	protein coding gene	opioid receptor, kappa 1
1	pseudogene	5.617837	5.618230	negative	MGI_C57BL6J_5610193	Gm36965	ENSEMBL:ENSMUSG00000103936	MGI:5610193	pseudogene	predicted gene, 36965
1	gene	5.644645	5.644745	negative	MGI_C57BL6J_5452240	Gm22463	ENSEMBL:ENSMUSG00000093015	MGI:5452240	miRNA gene	predicted gene, 22463
1	gene	5.842874	5.844672	negative	MGI_C57BL6J_5610657	Gm37429	ENSEMBL:ENSMUSG00000103519	MGI:5610657	unclassified gene	predicted gene, 37429
1	gene	5.913707	5.917398	negative	MGI_C57BL6J_891989	Npbwr1	NCBI_Gene:226304,ENSEMBL:ENSMUSG00000033774	MGI:891989	protein coding gene	neuropeptides B/W receptor 1
1	pseudogene	6.048963	6.050045	negative	MGI_C57BL6J_5011399	Gm19214	NCBI_Gene:100418441,ENSEMBL:ENSMUSG00000103090	MGI:5011399	pseudogene	predicted gene, 19214
1	gene	6.164706	6.167315	negative	MGI_C57BL6J_5825843	Gm46206	NCBI_Gene:108167788	MGI:5825843	lncRNA gene	predicted gene, 46206
1	gene	6.206197	6.276648	positive	MGI_C57BL6J_1341850	Rb1cc1	NCBI_Gene:12421,ENSEMBL:ENSMUSG00000025907	MGI:1341850	protein coding gene	RB1-inducible coiled-coil 1
1	gene	6.209863	6.216612	negative	MGI_C57BL6J_3604103	4732440D04Rik	NCBI_Gene:654788,ENSEMBL:ENSMUSG00000090031	MGI:3604103	lncRNA gene	RIKEN cDNA 4732440D04 gene
1	gene	6.359218	6.394731	positive	MGI_C57BL6J_3645495	Alkal1	NCBI_Gene:620393,ENSEMBL:ENSMUSG00000087247	MGI:3645495	protein coding gene	ALK and LTK ligand 1
1	gene	6.377512	6.382119	negative	MGI_C57BL6J_5825720	Gm46083	NCBI_Gene:108167611	MGI:5825720	lncRNA gene	predicted gene, 46083
1	pseudogene	6.380274	6.382392	positive	MGI_C57BL6J_3780316	Gm2147	NCBI_Gene:100039302,ENSEMBL:ENSMUSG00000103355	MGI:3780316	pseudogene	predicted gene 2147
1	pseudogene	6.382229	6.383180	negative	MGI_C57BL6J_3647903	Gm7417	NCBI_Gene:102631893,ENSEMBL:ENSMUSG00000102706	MGI:3647903	pseudogene	predicted gene 7417
1	pseudogene	6.429655	6.441296	negative	MGI_C57BL6J_5011211	Gm19026	NCBI_Gene:100418138,ENSEMBL:ENSMUSG00000103845	MGI:5011211	pseudogene	predicted gene, 19026
1	gene	6.487231	6.860940	positive	MGI_C57BL6J_2446700	St18	NCBI_Gene:240690,ENSEMBL:ENSMUSG00000033740	MGI:2446700	protein coding gene	suppression of tumorigenicity 18
1	gene	6.861237	6.864151	negative	MGI_C57BL6J_5662629	Gm42492	ENSEMBL:ENSMUSG00000103329	MGI:5662629	unclassified gene	predicted gene 42492
1	pseudogene	6.910464	6.911239	positive	MGI_C57BL6J_3647895	Gm7449	NCBI_Gene:665015,ENSEMBL:ENSMUSG00000104385	MGI:3647895	pseudogene	predicted gene 7449
1	pseudogene	6.916526	6.923642	positive	MGI_C57BL6J_5610336	Gm37108	NCBI_Gene:102641523,ENSEMBL:ENSMUSG00000102135	MGI:5610336	pseudogene	predicted gene, 37108
1	pseudogene	6.929759	6.929788	positive	MGI_C57BL6J_5610503	Gm37275	ENSEMBL:ENSMUSG00000103282	MGI:5610503	pseudogene	predicted gene, 37275
1	pseudogene	6.998217	6.998541	positive	MGI_C57BL6J_5610453	Gm37225	ENSEMBL:ENSMUSG00000102534	MGI:5610453	pseudogene	predicted gene, 37225
1	pseudogene	7.013762	7.013920	positive	MGI_C57BL6J_5610717	Gm37489	ENSEMBL:ENSMUSG00000102213	MGI:5610717	pseudogene	predicted gene, 37489
1	pseudogene	7.035881	7.037223	positive	MGI_C57BL6J_3645764	Gm5694	NCBI_Gene:435608,ENSEMBL:ENSMUSG00000103629	MGI:3645764	pseudogene	predicted gene 5694
1	gene	7.088892	7.173628	positive	MGI_C57BL6J_2441773	Pcmtd1	NCBI_Gene:319263,ENSEMBL:ENSMUSG00000051285	MGI:2441773	protein coding gene	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
1	pseudogene	7.136195	7.137827	negative	MGI_C57BL6J_5504098	Gm26983	NCBI_Gene:108167612,ENSEMBL:ENSMUSG00000098201	MGI:5504098	pseudogene	predicted gene, 26983
1	gene	7.148110	7.152137	positive	MGI_C57BL6J_5611600	Gm38372	ENSEMBL:ENSMUSG00000103509	MGI:5611600	unclassified gene	predicted gene, 38372
1	pseudogene	7.177675	7.179753	positive	MGI_C57BL6J_3642725	Gm9826	NCBI_Gene:545302,ENSEMBL:ENSMUSG00000048538	MGI:3642725	pseudogene	predicted gene 9826
1	pseudogene	7.188158	7.190142	negative	MGI_C57BL6J_97378	Nras-ps2	NCBI_Gene:18178,ENSEMBL:ENSMUSG00000103709	MGI:97378	pseudogene	neuroblastoma ras oncogene, pseudogene 2
1	gene	7.265803	7.265932	positive	MGI_C57BL6J_5453051	Gm23274	ENSEMBL:ENSMUSG00000077244	MGI:5453051	snoRNA gene	predicted gene, 23274
1	gene	7.314638	7.398666	negative	MGI_C57BL6J_5477395	Gm26901	NCBI_Gene:102632124,ENSEMBL:ENSMUSG00000097797	MGI:5477395	lncRNA gene	predicted gene, 26901
1	pseudogene	7.315451	7.316462	positive	MGI_C57BL6J_5011187	Gm19002	NCBI_Gene:100418102,ENSEMBL:ENSMUSG00000102768	MGI:5011187	pseudogene	predicted gene, 19002
1	pseudogene	7.410679	7.411996	positive	MGI_C57BL6J_5011169	Gm18984	NCBI_Gene:100418076,ENSEMBL:ENSMUSG00000103498	MGI:5011169	pseudogene	predicted gene, 18984
1	gene	7.497968	7.518149	positive	MGI_C57BL6J_5589573	Gm30414	ENSEMBL:ENSMUSG00000103067	MGI:5589573	lncRNA gene	predicted gene, 30414
1	pseudogene	7.591646	7.591931	positive	MGI_C57BL6J_5611019	Gm37791	ENSEMBL:ENSMUSG00000102320	MGI:5611019	pseudogene	predicted gene, 37791
1	pseudogene	7.597370	7.599482	positive	MGI_C57BL6J_3645544	Gm7470	NCBI_Gene:665063,ENSEMBL:ENSMUSG00000104226	MGI:3645544	pseudogene	predicted gene 7470
1	pseudogene	7.664051	7.665000	positive	MGI_C57BL6J_3645546	Rps2-ps2	NCBI_Gene:665069,ENSEMBL:ENSMUSG00000103903	MGI:3645546	pseudogene	ribosomal protein S2, pseudogene 2
1	pseudogene	7.728861	7.730565	negative	MGI_C57BL6J_5611444	Gm38216	ENSEMBL:ENSMUSG00000103557	MGI:5611444	pseudogene	predicted gene, 38216
1	pseudogene	7.767622	7.768739	negative	MGI_C57BL6J_5010088	Gm17903	NCBI_Gene:100416072	MGI:5010088	pseudogene	predicted gene, 17903
1	gene	8.108629	8.122449	negative	MGI_C57BL6J_5622474	Gm39589	NCBI_Gene:105243858	MGI:5622474	lncRNA gene	predicted gene, 39589
1	gene	8.359739	9.301066	negative	MGI_C57BL6J_1918346	Sntg1	NCBI_Gene:71096,ENSEMBL:ENSMUSG00000025909	MGI:1918346	protein coding gene	syntrophin, gamma 1
1	gene	8.450960	8.453491	negative	MGI_C57BL6J_5611252	Gm38024	ENSEMBL:ENSMUSG00000102647	MGI:5611252	unclassified gene	predicted gene, 38024
1	pseudogene	8.468426	8.468825	negative	MGI_C57BL6J_3826541	Gm16284	ENSEMBL:ENSMUSG00000086235	MGI:3826541	pseudogene	predicted gene 16284
1	gene	8.527780	8.531313	negative	MGI_C57BL6J_5611487	Gm38259	ENSEMBL:ENSMUSG00000102253	MGI:5611487	unclassified gene	predicted gene, 38259
1	gene	8.588615	8.588724	negative	MGI_C57BL6J_5453135	Gm23358	ENSEMBL:ENSMUSG00000093970	MGI:5453135	miRNA gene	predicted gene, 23358
1	gene	8.643696	8.644859	negative	MGI_C57BL6J_5610233	Gm37005	ENSEMBL:ENSMUSG00000103884	MGI:5610233	unclassified gene	predicted gene, 37005
1	pseudogene	8.791661	8.792229	negative	MGI_C57BL6J_3768636	Gm15452	NCBI_Gene:100039474,ENSEMBL:ENSMUSG00000084353	MGI:3768636	pseudogene	predicted gene 15452
1	pseudogene	8.815842	8.816039	positive	MGI_C57BL6J_5610192	Gm36964	ENSEMBL:ENSMUSG00000103933	MGI:5610192	pseudogene	predicted gene, 36964
1	gene	8.816138	8.816247	positive	MGI_C57BL6J_5454053	Gm24276	ENSEMBL:ENSMUSG00000076135	MGI:5454053	miRNA gene	predicted gene, 24276
1	pseudogene	8.855112	8.856334	negative	MGI_C57BL6J_3648859	Gm6152	NCBI_Gene:102632599,ENSEMBL:ENSMUSG00000086195	MGI:3648859	pseudogene	predicted gene 6152
1	pseudogene	8.856558	8.857402	positive	MGI_C57BL6J_3644942	Gm7445	NCBI_Gene:102632504,ENSEMBL:ENSMUSG00000104504	MGI:3644942	pseudogene	predicted gene 7445
1	pseudogene	8.962622	8.963865	negative	MGI_C57BL6J_3643471	Gm7493	NCBI_Gene:102632382,ENSEMBL:ENSMUSG00000066693	MGI:3643471	pseudogene	predicted gene 7493
1	gene	9.191067	9.192116	negative	MGI_C57BL6J_5610857	Gm37629	ENSEMBL:ENSMUSG00000102316	MGI:5610857	unclassified gene	predicted gene, 37629
1	pseudogene	9.258617	9.259134	negative	MGI_C57BL6J_5611236	Gm38008	ENSEMBL:ENSMUSG00000103819	MGI:5611236	pseudogene	predicted gene, 38008
1	gene	9.286922	9.290180	positive	MGI_C57BL6J_5610371	Gm37143	ENSEMBL:ENSMUSG00000102871	MGI:5610371	unclassified gene	predicted gene, 37143
1	pseudogene	9.396668	9.398687	negative	MGI_C57BL6J_3648954	Gm6187	NCBI_Gene:620853,ENSEMBL:ENSMUSG00000101571	MGI:3648954	pseudogene	predicted gene 6187
1	gene	9.437054	9.438070	positive	MGI_C57BL6J_5589878	Gm30719	NCBI_Gene:102632723	MGI:5589878	lncRNA gene	predicted gene, 30719
1	pseudogene	9.439741	9.440432	negative	MGI_C57BL6J_5010484	Gm18299	NCBI_Gene:100416881,ENSEMBL:ENSMUSG00000104428	MGI:5010484	pseudogene	predicted gene, 18299
1	pseudogene	9.450508	9.452040	positive	MGI_C57BL6J_3646401	Gm7512	NCBI_Gene:665138,ENSEMBL:ENSMUSG00000102272	MGI:3646401	pseudogene	predicted gene 7512
1	gene	9.458670	9.458772	positive	MGI_C57BL6J_5454542	Gm24765	ENSEMBL:ENSMUSG00000065625	MGI:5454542	snRNA gene	predicted gene, 24765
1	pseudogene	9.499338	9.501522	negative	MGI_C57BL6J_5010485	Gm18300	NCBI_Gene:100416882,ENSEMBL:ENSMUSG00000103411	MGI:5010485	pseudogene	predicted gene, 18300
1	gene	9.545408	9.547455	positive	MGI_C57BL6J_1929721	Rrs1	NCBI_Gene:59014,ENSEMBL:ENSMUSG00000061024	MGI:1929721	protein coding gene	ribosome biogenesis regulator 1
1	gene	9.547935	9.580673	positive	MGI_C57BL6J_1923437	Adhfe1	NCBI_Gene:76187,ENSEMBL:ENSMUSG00000025911	MGI:1923437	protein coding gene	alcohol dehydrogenase, iron containing, 1
1	gene	9.560832	9.631175	negative	MGI_C57BL6J_1919731	2610203C22Rik	NCBI_Gene:72481,ENSEMBL:ENSMUSG00000079671	MGI:1919731	lncRNA gene	RIKEN cDNA 2610203C22 gene
1	pseudogene	9.574536	9.575865	positive	MGI_C57BL6J_3644104	Gm6161	NCBI_Gene:620542,ENSEMBL:ENSMUSG00000081441	MGI:3644104	pseudogene	predicted gene 6161
1	gene	9.601199	9.627143	positive	MGI_C57BL6J_1924232	Vxn	NCBI_Gene:76982,ENSEMBL:ENSMUSG00000067879	MGI:1924232	protein coding gene	vexin
1	gene	9.639255	9.640582	negative	MGI_C57BL6J_5580226	Gm29520	ENSEMBL:ENSMUSG00000099827	MGI:5580226	lncRNA gene	predicted gene 29520
1	gene	9.667407	9.700439	negative	MGI_C57BL6J_99925	Mybl1	NCBI_Gene:17864,ENSEMBL:ENSMUSG00000025912	MGI:99925	protein coding gene	myeloblastosis oncogene-like 1
1	gene	9.718622	9.748382	negative	MGI_C57BL6J_1917925	Vcpip1	NCBI_Gene:70675,ENSEMBL:ENSMUSG00000045210	MGI:1917925	protein coding gene	valosin containing protein (p97)/p47 complex interacting protein 1
1	gene	9.747648	9.791924	positive	MGI_C57BL6J_1920581	1700034P13Rik	NCBI_Gene:73331,ENSEMBL:ENSMUSG00000097893	MGI:1920581	lncRNA gene	RIKEN cDNA 1700034P13 gene
1	gene	9.775558	9.791319	positive	MGI_C57BL6J_5622475	Gm39590	NCBI_Gene:105243859	MGI:5622475	lncRNA gene	predicted gene, 39590
1	gene	9.798107	9.902570	positive	MGI_C57BL6J_2182368	Sgk3	NCBI_Gene:170755,ENSEMBL:ENSMUSG00000025915	MGI:2182368	protein coding gene	serum/glucocorticoid regulated kinase 3
1	pseudogene	9.802163	9.802665	negative	MGI_C57BL6J_3647661	Gm6195	NCBI_Gene:108167613,ENSEMBL:ENSMUSG00000046334	MGI:3647661	pseudogene	predicted pseudogene 6195
1	gene	9.834498	9.834602	negative	MGI_C57BL6J_5452384	Gm22607	ENSEMBL:ENSMUSG00000088916	MGI:5452384	snRNA gene	predicted gene, 22607
1	pseudogene	9.901944	9.902558	positive	MGI_C57BL6J_3829209	Gm2352	NCBI_Gene:100039643	MGI:3829209	pseudogene	predicted gene 2352
1	gene	9.906157	9.942166	positive	MGI_C57BL6J_3045334	Mcmdc2	NCBI_Gene:240697,ENSEMBL:ENSMUSG00000046101	MGI:3045334	protein coding gene	minichromosome maintenance domain containing 2
1	gene	9.941959	9.944118	negative	MGI_C57BL6J_1921074	Snhg6	NCBI_Gene:73824,ENSEMBL:ENSMUSG00000098234	MGI:1921074	lncRNA gene	small nucleolar RNA host gene 6
1	gene	9.942463	9.942549	negative	MGI_C57BL6J_2387894	Snord87	NCBI_Gene:266793,ENSEMBL:ENSMUSG00000093178	MGI:2387894	snoRNA gene	small nucleolar RNA, C/D box 87
1	gene	9.960163	9.968207	negative	MGI_C57BL6J_3780500	Tcf24	NCBI_Gene:100039596,ENSEMBL:ENSMUSG00000099032	MGI:3780500	protein coding gene	transcription factor 24
1	gene	9.967314	9.968687	positive	MGI_C57BL6J_3649088	E330040D14Rik	ENSEMBL:ENSMUSG00000104025	MGI:3649088	unclassified gene	RIKEN cDNA E330040D14 gene
1	gene	9.968622	10.013541	negative	MGI_C57BL6J_1921138	Ppp1r42	NCBI_Gene:69312,ENSEMBL:ENSMUSG00000025916	MGI:1921138	protein coding gene	protein phosphatase 1, regulatory subunit 42
1	gene	9.982387	9.992366	positive	MGI_C57BL6J_3801960	Gm15818	ENSEMBL:ENSMUSG00000087199	MGI:3801960	lncRNA gene	predicted gene 15818
1	gene	10.009814	10.009917	negative	MGI_C57BL6J_5454451	Gm24674	ENSEMBL:ENSMUSG00000095780	MGI:5454451	snRNA gene	predicted gene, 24674
1	gene	10.024600	10.038168	negative	MGI_C57BL6J_1349415	Cops5	NCBI_Gene:26754,ENSEMBL:ENSMUSG00000025917	MGI:1349415	protein coding gene	COP9 signalosome subunit 5
1	gene	10.037987	10.136771	positive	MGI_C57BL6J_2681832	Cspp1	NCBI_Gene:211660,ENSEMBL:ENSMUSG00000056763	MGI:2681832	protein coding gene	centrosome and spindle pole associated protein 1
1	gene	10.057025	10.057944	negative	MGI_C57BL6J_1923853	1700047N06Rik	ENSEMBL:ENSMUSG00000102356	MGI:1923853	unclassified gene	RIKEN cDNA 1700047N06 gene
1	gene	10.137507	10.232670	negative	MGI_C57BL6J_2442988	Arfgef1	NCBI_Gene:211673,ENSEMBL:ENSMUSG00000067851	MGI:2442988	protein coding gene	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
1	gene	10.166539	10.166778	positive	MGI_C57BL6J_5456125	Gm26348	ENSEMBL:ENSMUSG00000088153	MGI:5456125	unclassified non-coding RNA gene	predicted gene, 26348
1	gene	10.197081	10.198802	negative	MGI_C57BL6J_5610797	Gm37569	ENSEMBL:ENSMUSG00000102556	MGI:5610797	unclassified gene	predicted gene, 37569
1	gene	10.295791	10.720061	negative	MGI_C57BL6J_3045348	Cpa6	NCBI_Gene:329093,ENSEMBL:ENSMUSG00000042501	MGI:3045348	protein coding gene	carboxypeptidase A6
1	gene	10.449245	10.451989	negative	MGI_C57BL6J_5611233	Gm38005	ENSEMBL:ENSMUSG00000103810	MGI:5611233	unclassified gene	predicted gene, 38005
1	pseudogene	10.554007	10.555553	negative	MGI_C57BL6J_3783051	Gm15604	NCBI_Gene:100416202,ENSEMBL:ENSMUSG00000083422	MGI:3783051	pseudogene	predicted gene 15604
1	gene	10.555554	10.555660	negative	MGI_C57BL6J_5455030	Gm25253	ENSEMBL:ENSMUSG00000094979	MGI:5455030	snRNA gene	predicted gene, 25253
1	pseudogene	10.694415	10.695614	positive	MGI_C57BL6J_3783050	Gm15603	NCBI_Gene:102636010,ENSEMBL:ENSMUSG00000081417	MGI:3783050	pseudogene	predicted gene 15603
1	gene	10.782456	10.784377	negative	MGI_C57BL6J_5610361	Gm37133	ENSEMBL:ENSMUSG00000103448	MGI:5610361	unclassified gene	predicted gene, 37133
1	pseudogene	10.805281	10.806522	positive	MGI_C57BL6J_3649087	Gm5522	NCBI_Gene:433271,ENSEMBL:ENSMUSG00000100212	MGI:3649087	pseudogene	predicted gene 5522
1	pseudogene	10.868688	10.869446	positive	MGI_C57BL6J_5579365	Gm28659	ENSEMBL:ENSMUSG00000100648	MGI:5579365	pseudogene	predicted gene 28659
1	gene	10.921670	10.921760	positive	MGI_C57BL6J_5452740	Gm22963	ENSEMBL:ENSMUSG00000088585	MGI:5452740	snoRNA gene	predicted gene, 22963
1	gene	10.993272	11.303683	positive	MGI_C57BL6J_1923385	Prex2	NCBI_Gene:109294,ENSEMBL:ENSMUSG00000048960	MGI:1923385	protein coding gene	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
1	gene	11.134111	11.134238	negative	MGI_C57BL6J_5453950	Gm24173	ENSEMBL:ENSMUSG00000077318	MGI:5453950	snoRNA gene	predicted gene, 24173
1	pseudogene	11.223566	11.224174	negative	MGI_C57BL6J_5579392	Gm28686	ENSEMBL:ENSMUSG00000101827	MGI:5579392	pseudogene	predicted gene 28686
1	gene	11.363926	11.366964	negative	MGI_C57BL6J_5610638	Gm37410	ENSEMBL:ENSMUSG00000103494	MGI:5610638	unclassified gene	predicted gene, 37410
1	gene	11.413563	11.975902	positive	MGI_C57BL6J_2444149	A830018L16Rik	NCBI_Gene:320492,ENSEMBL:ENSMUSG00000057715	MGI:2444149	protein coding gene	RIKEN cDNA A830018L16 gene
1	gene	11.416918	11.419388	positive	MGI_C57BL6J_5611406	Gm38178	ENSEMBL:ENSMUSG00000103825	MGI:5611406	unclassified gene	predicted gene, 38178
1	pseudogene	11.608139	11.608400	negative	MGI_C57BL6J_5579979	Gm29273	ENSEMBL:ENSMUSG00000099845	MGI:5579979	pseudogene	predicted gene 29273
1	gene	11.704207	11.706350	positive	MGI_C57BL6J_5611297	Gm38069	ENSEMBL:ENSMUSG00000103561	MGI:5611297	unclassified gene	predicted gene, 38069
1	gene	11.979540	11.991123	positive	MGI_C57BL6J_5590057	Gm30898	NCBI_Gene:102632954	MGI:5590057	lncRNA gene	predicted gene, 30898
1	gene	12.029084	12.061033	negative	MGI_C57BL6J_5590133	Gm30974	NCBI_Gene:102633057	MGI:5590133	lncRNA gene	predicted gene, 30974
1	pseudogene	12.120939	12.122032	positive	MGI_C57BL6J_3648484	Gm7560	NCBI_Gene:665262,ENSEMBL:ENSMUSG00000101610	MGI:3648484	pseudogene	predicted gene 7560
1	gene	12.374936	12.375042	positive	MGI_C57BL6J_5452410	Gm22633	ENSEMBL:ENSMUSG00000093864	MGI:5452410	snRNA gene	predicted gene, 22633
1	gene	12.423687	12.432474	negative	MGI_C57BL6J_5622476	Gm39591	NCBI_Gene:105243860	MGI:5622476	lncRNA gene	predicted gene, 39591
1	gene	12.425986	12.426106	positive	MGI_C57BL6J_5530644	Mir6341	miRBase:MI0021869,NCBI_Gene:102465961,ENSEMBL:ENSMUSG00000098555	MGI:5530644	miRNA gene	microRNA 6341
1	pseudogene	12.565560	12.566590	positive	MGI_C57BL6J_3780551	Gm2383	NCBI_Gene:100039709,ENSEMBL:ENSMUSG00000097628	MGI:3780551	pseudogene	predicted gene 2383
1	pseudogene	12.655843	12.656744	positive	MGI_C57BL6J_3647030	Gm6216	NCBI_Gene:621353,ENSEMBL:ENSMUSG00000098163	MGI:3647030	pseudogene	predicted gene 6216
1	gene	12.667563	12.673090	positive	MGI_C57BL6J_4937278	Gm17644	NCBI_Gene:329096,ENSEMBL:ENSMUSG00000097171	MGI:4937278	lncRNA gene	predicted gene, 17644
1	gene	12.670324	12.671176	negative	MGI_C57BL6J_5580369	Gm29663	ENSEMBL:ENSMUSG00000101314	MGI:5580369	lncRNA gene	predicted gene 29663
1	gene	12.692262	12.861192	positive	MGI_C57BL6J_2138563	Sulf1	NCBI_Gene:240725,ENSEMBL:ENSMUSG00000016918	MGI:2138563	protein coding gene	sulfatase 1
1	gene	12.866549	12.993063	negative	MGI_C57BL6J_2443431	Slco5a1	NCBI_Gene:240726,ENSEMBL:ENSMUSG00000025938	MGI:2443431	protein coding gene	solute carrier organic anion transporter family, member 5A1
1	gene	13.059401	13.059951	negative	MGI_C57BL6J_5610390	Gm37162	ENSEMBL:ENSMUSG00000104518	MGI:5610390	unclassified gene	predicted gene, 37162
1	pseudogene	13.061922	13.062537	positive	MGI_C57BL6J_3647667	Gm5250	NCBI_Gene:383490,ENSEMBL:ENSMUSG00000069620	MGI:3647667	pseudogene	predicted gene 5250
1	gene	13.068838	13.078662	positive	MGI_C57BL6J_5579989	Gm29283	ENSEMBL:ENSMUSG00000099498	MGI:5579989	lncRNA gene	predicted gene 29283
1	gene	13.090688	13.104959	negative	MGI_C57BL6J_5622477	Gm39592	NCBI_Gene:105243861	MGI:5622477	lncRNA gene	predicted gene, 39592
1	gene	13.113428	13.127163	negative	MGI_C57BL6J_3588194	Prdm14	NCBI_Gene:383491,ENSEMBL:ENSMUSG00000042414	MGI:3588194	protein coding gene	PR domain containing 14
1	gene	13.139105	13.374083	negative	MGI_C57BL6J_1276533	Ncoa2	NCBI_Gene:17978,ENSEMBL:ENSMUSG00000005886	MGI:1276533	protein coding gene	nuclear receptor coactivator 2
1	gene	13.145301	13.146630	negative	MGI_C57BL6J_1917334	2300004M11Rik	NA	NA	unclassified gene	RIKEN cDNA 2300004M11 gene
1	gene	13.177462	13.179714	negative	MGI_C57BL6J_5611604	Gm38376	ENSEMBL:ENSMUSG00000103506	MGI:5611604	unclassified gene	predicted gene, 38376
1	gene	13.234809	13.236434	negative	MGI_C57BL6J_5610637	Gm37409	ENSEMBL:ENSMUSG00000103495	MGI:5610637	unclassified gene	predicted gene, 37409
1	gene	13.262198	13.262279	positive	MGI_C57BL6J_5531263	Gm27881	ENSEMBL:ENSMUSG00000099183	MGI:5531263	miRNA gene	predicted gene, 27881
1	gene	13.289812	13.290506	negative	MGI_C57BL6J_5611451	Gm38223	ENSEMBL:ENSMUSG00000102639	MGI:5611451	unclassified gene	predicted gene, 38223
1	gene	13.297036	13.298907	negative	MGI_C57BL6J_5610930	Gm37702	ENSEMBL:ENSMUSG00000104170	MGI:5610930	unclassified gene	predicted gene, 37702
1	gene	13.334498	13.334609	negative	MGI_C57BL6J_5452946	Gm23169	ENSEMBL:ENSMUSG00000087782	MGI:5452946	snRNA gene	predicted gene, 23169
1	gene	13.343563	13.348204	negative	MGI_C57BL6J_5611348	Gm38120	ENSEMBL:ENSMUSG00000103085	MGI:5611348	unclassified gene	predicted gene, 38120
1	gene	13.354483	13.356730	negative	MGI_C57BL6J_5611608	Gm38380	ENSEMBL:ENSMUSG00000102664	MGI:5611608	unclassified gene	predicted gene, 38380
1	gene	13.376070	13.388413	positive	MGI_C57BL6J_5580276	Gm29570	ENSEMBL:ENSMUSG00000101476	MGI:5580276	lncRNA gene	predicted gene 29570
1	gene	13.392554	13.422408	negative	MGI_C57BL6J_5622480	Gm39595	NCBI_Gene:105243864	MGI:5622480	lncRNA gene	predicted gene, 39595
1	pseudogene	13.407010	13.407655	negative	MGI_C57BL6J_3647262	Gm7593	NCBI_Gene:665341,ENSEMBL:ENSMUSG00000101171	MGI:3647262	pseudogene	predicted gene 7593
1	pseudogene	13.436514	13.436800	positive	MGI_C57BL6J_5622485	Gm39600	NCBI_Gene:105243872	MGI:5622485	pseudogene	predicted gene, 39600
1	gene	13.564693	13.589910	negative	MGI_C57BL6J_1919515	Tram1	NCBI_Gene:72265,ENSEMBL:ENSMUSG00000025935	MGI:1919515	protein coding gene	translocating chain-associating membrane protein 1
1	gene	13.623330	13.660605	negative	MGI_C57BL6J_2442551	Lactb2	NCBI_Gene:212442,ENSEMBL:ENSMUSG00000025937	MGI:2442551	protein coding gene	lactamase, beta 2
1	gene	13.641483	13.642748	negative	MGI_C57BL6J_5611547	Gm38319	ENSEMBL:ENSMUSG00000102982	MGI:5611547	unclassified gene	predicted gene, 38319
1	gene	13.668738	13.702230	positive	MGI_C57BL6J_2686466	Xkr9	NCBI_Gene:381246,ENSEMBL:ENSMUSG00000067813	MGI:2686466	protein coding gene	X-linked Kx blood group related 9
1	gene	13.774334	13.774464	negative	MGI_C57BL6J_5456050	Gm26273	ENSEMBL:ENSMUSG00000077368	MGI:5456050	snoRNA gene	predicted gene, 26273
1	pseudogene	13.774628	13.775938	negative	MGI_C57BL6J_3780619	Gm2452	NCBI_Gene:100039843	MGI:3780619	pseudogene	predicted gene 2452
1	pseudogene	13.785685	13.786929	negative	MGI_C57BL6J_3649089	Gm5523	NCBI_Gene:433273,ENSEMBL:ENSMUSG00000097711	MGI:3649089	pseudogene	predicted pseudogene 5523
1	gene	13.846500	13.881933	positive	MGI_C57BL6J_5590354	Gm31195	NCBI_Gene:102633349	MGI:5590354	lncRNA gene	predicted gene, 31195
1	gene	13.846871	13.849119	negative	MGI_C57BL6J_5610175	Gm36947	ENSEMBL:ENSMUSG00000102166	MGI:5610175	unclassified gene	predicted gene, 36947
1	pseudogene	13.916903	13.917754	positive	MGI_C57BL6J_5011307	Gm19122	NCBI_Gene:100418294	MGI:5011307	pseudogene	predicted gene, 19122
1	gene	13.932378	13.932685	positive	MGI_C57BL6J_5455268	Gm25491	ENSEMBL:ENSMUSG00000089358	MGI:5455268	unclassified non-coding RNA gene	predicted gene, 25491
1	gene	14.042254	14.141388	positive	MGI_C57BL6J_5622481	Gm39596	NCBI_Gene:105243865	MGI:5622481	lncRNA gene	predicted gene, 39596
1	gene	14.109215	14.112819	negative	MGI_C57BL6J_5610628	Gm37400	ENSEMBL:ENSMUSG00000104209	MGI:5610628	unclassified gene	predicted gene, 37400
1	gene	14.168953	14.310267	negative	MGI_C57BL6J_109344	Eya1	NCBI_Gene:14048,ENSEMBL:ENSMUSG00000025932	MGI:109344	protein coding gene	EYA transcriptional coactivator and phosphatase 1
1	gene	14.182578	14.182677	positive	MGI_C57BL6J_5452393	Gm22616	ENSEMBL:ENSMUSG00000095853	MGI:5452393	miRNA gene	predicted gene, 22616
1	gene	14.255552	14.255990	negative	MGI_C57BL6J_5610672	Gm37444	ENSEMBL:ENSMUSG00000102588	MGI:5610672	unclassified gene	predicted gene, 37444
1	pseudogene	14.550433	14.551087	positive	MGI_C57BL6J_3644738	Gm7617	NCBI_Gene:665391	MGI:3644738	pseudogene	predicted gene 7617
1	gene	14.752937	14.780974	positive	MGI_C57BL6J_3642739	Gm9947	NCBI_Gene:105243866,ENSEMBL:ENSMUSG00000054493	MGI:3642739	lncRNA gene	predicted gene 9947
1	gene	14.753344	14.756089	negative	MGI_C57BL6J_1333884	Msc	NCBI_Gene:17681,ENSEMBL:ENSMUSG00000025930	MGI:1333884	protein coding gene	musculin
1	gene	14.788645	14.792965	positive	MGI_C57BL6J_5610640	Gm37412	ENSEMBL:ENSMUSG00000103492	MGI:5610640	unclassified gene	predicted gene, 37412
1	pseudogene	14.839267	14.840273	negative	MGI_C57BL6J_2149598	Smt3h2-ps4	NCBI_Gene:114607,ENSEMBL:ENSMUSG00000081201	MGI:2149598	pseudogene	SMT3 suppressor of mif two 3 homolog 2, pseudogene 4 (S. cerevisiae)
1	pseudogene	14.865018	14.866019	positive	MGI_C57BL6J_3647110	Rpl5-ps1	NCBI_Gene:665407,ENSEMBL:ENSMUSG00000082193	MGI:3647110	pseudogene	ribosomal protein L5, pseudogene 1
1	pseudogene	14.869758	14.870038	positive	MGI_C57BL6J_5592659	Gm33500	NCBI_Gene:102636435	MGI:5592659	pseudogene	predicted gene, 33500
1	gene	14.872648	14.919014	negative	MGI_C57BL6J_3522699	Trpa1	NCBI_Gene:277328,ENSEMBL:ENSMUSG00000032769	MGI:3522699	protein coding gene	transient receptor potential cation channel, subfamily A, member 1
1	gene	15.019040	15.019159	negative	MGI_C57BL6J_5456122	Gm26345	ENSEMBL:ENSMUSG00000088159	MGI:5456122	snoRNA gene	predicted gene, 26345
1	pseudogene	15.067032	15.067558	positive	MGI_C57BL6J_3642999	Gm5048	NCBI_Gene:269105	MGI:3642999	pseudogene	predicted gene 5048
1	pseudogene	15.201959	15.205406	positive	MGI_C57BL6J_5012102	Gm19917	NCBI_Gene:100503835	MGI:5012102	pseudogene	predicted gene, 19917
1	pseudogene	15.268604	15.269815	negative	MGI_C57BL6J_3642220	Gm10566	NCBI_Gene:100039959,ENSEMBL:ENSMUSG00000073737	MGI:3642220	pseudogene	predicted gene 10566
1	gene	15.287157	15.723751	positive	MGI_C57BL6J_99632	Kcnb2	NCBI_Gene:98741,ENSEMBL:ENSMUSG00000092083	MGI:99632	protein coding gene	potassium voltage gated channel, Shab-related subfamily, member 2
1	gene	15.364302	15.365834	positive	MGI_C57BL6J_5611344	Gm38116	ENSEMBL:ENSMUSG00000102937	MGI:5611344	unclassified gene	predicted gene, 38116
1	gene	15.556249	15.558337	positive	MGI_C57BL6J_5610366	Gm37138	ENSEMBL:ENSMUSG00000104149	MGI:5610366	unclassified gene	predicted gene, 37138
1	gene	15.570583	15.571242	positive	MGI_C57BL6J_1924619	9430087D07Rik	NA	NA	unclassified gene	RIKEN cDNA 9430087D07 gene
1	gene	15.685935	15.686046	negative	MGI_C57BL6J_5455004	Gm25227	ENSEMBL:ENSMUSG00000088829	MGI:5455004	snoRNA gene	predicted gene, 25227
1	gene	15.757832	15.757963	positive	MGI_C57BL6J_5454945	Gm25168	ENSEMBL:ENSMUSG00000077377	MGI:5454945	snoRNA gene	predicted gene, 25168
1	pseudogene	15.759930	15.760680	negative	MGI_C57BL6J_3648622	Gm6060	NCBI_Gene:606528,ENSEMBL:ENSMUSG00000101652	MGI:3648622	pseudogene	predicted gene 6060
1	pseudogene	15.760761	15.760860	positive	MGI_C57BL6J_5579375	Gm28669	ENSEMBL:ENSMUSG00000100814	MGI:5579375	pseudogene	predicted gene 28669
1	gene	15.804982	15.844052	positive	MGI_C57BL6J_109634	Terf1	NCBI_Gene:21749,ENSEMBL:ENSMUSG00000025925	MGI:109634	protein coding gene	telomeric repeat binding factor 1
1	gene	15.853331	15.856499	positive	MGI_C57BL6J_5610737	Gm37509	ENSEMBL:ENSMUSG00000104379	MGI:5610737	unclassified gene	predicted gene, 37509
1	gene	15.853862	15.892722	negative	MGI_C57BL6J_2684952	Sbspon	NCBI_Gene:226866,ENSEMBL:ENSMUSG00000032719	MGI:2684952	protein coding gene	somatomedin B and thrombospondin, type 1 domain containing
1	gene	15.879530	15.879832	positive	MGI_C57BL6J_5453036	Gm23259	ENSEMBL:ENSMUSG00000088943	MGI:5453036	unclassified non-coding RNA gene	predicted gene, 23259
1	gene	15.905205	15.907764	positive	MGI_C57BL6J_5590682	Gm31523	NCBI_Gene:102633776	MGI:5590682	lncRNA gene	predicted gene, 31523
1	pseudogene	16.053335	16.053906	positive	MGI_C57BL6J_3644198	Gm7634	NCBI_Gene:665434,ENSEMBL:ENSMUSG00000100652	MGI:3644198	pseudogene	predicted gene 7634
1	gene	16.065974	16.093344	negative	MGI_C57BL6J_1923049	4930444P10Rik	NCBI_Gene:75799,ENSEMBL:ENSMUSG00000067795	MGI:1923049	protein coding gene	RIKEN cDNA 4930444P10 gene
1	gene	16.101295	16.104662	negative	MGI_C57BL6J_98073	Rpl7	NCBI_Gene:19989,ENSEMBL:ENSMUSG00000043716	MGI:98073	protein coding gene	ribosomal protein L7
1	gene	16.105774	16.133734	positive	MGI_C57BL6J_1924238	Rdh10	NCBI_Gene:98711,ENSEMBL:ENSMUSG00000025921	MGI:1924238	protein coding gene	retinol dehydrogenase 10 (all-trans)
1	gene	16.208197	16.210517	negative	MGI_C57BL6J_5611477	Gm38249	ENSEMBL:ENSMUSG00000104165	MGI:5611477	unclassified gene	predicted gene, 38249
1	gene	16.228506	16.244062	positive	MGI_C57BL6J_5578801	Gm28095	ENSEMBL:ENSMUSG00000100868	MGI:5578801	lncRNA gene	predicted gene 28095
1	gene	16.228674	16.520182	negative	MGI_C57BL6J_1352508	Stau2	NCBI_Gene:29819,ENSEMBL:ENSMUSG00000025920	MGI:1352508	protein coding gene	staufen double-stranded RNA binding protein 2
1	gene	16.253587	16.267921	positive	MGI_C57BL6J_3649156	Gm7568	NCBI_Gene:102634042,ENSEMBL:ENSMUSG00000089982	MGI:3649156	lncRNA gene	predicted gene 7568
1	gene	16.309438	16.311723	negative	MGI_C57BL6J_3028048	C130013N14Rik	NA	NA	unclassified gene	RIKEN cDNA C130013N14 gene
1	gene	16.540788	16.619489	negative	MGI_C57BL6J_1914049	Ube2w	NCBI_Gene:66799,ENSEMBL:ENSMUSG00000025939	MGI:1914049	protein coding gene	ubiquitin-conjugating enzyme E2W (putative)
1	gene	16.591021	16.596309	negative	MGI_C57BL6J_5825721	Gm46084	NCBI_Gene:108167614	MGI:5825721	protein coding gene	predicted gene, 46084
1	gene	16.604594	16.604936	negative	MGI_C57BL6J_1925631	2310047N11Rik	NA	NA	unclassified gene	RIKEN cDNA 2310047N11 gene
1	gene	16.618560	16.621539	positive	MGI_C57BL6J_5611570	Gm38342	ENSEMBL:ENSMUSG00000102457	MGI:5611570	unclassified gene	predicted gene, 38342
1	gene	16.641725	16.657119	negative	MGI_C57BL6J_1915173	Eloc	NCBI_Gene:67923,ENSEMBL:ENSMUSG00000079658	MGI:1915173	protein coding gene	elongin C
1	gene	16.657552	16.662278	positive	MGI_C57BL6J_4437728	D030040B21Rik	NCBI_Gene:329101,ENSEMBL:ENSMUSG00000097744	MGI:4437728	lncRNA gene	RIKEN cDNA D030040B21 gene
1	pseudogene	16.662385	16.663714	negative	MGI_C57BL6J_3648037	Gm7654	NCBI_Gene:665480,ENSEMBL:ENSMUSG00000100959	MGI:3648037	pseudogene	predicted gene 7654
1	gene	16.665191	16.678275	positive	MGI_C57BL6J_1915068	Tmem70	NCBI_Gene:70397,ENSEMBL:ENSMUSG00000025940	MGI:1915068	protein coding gene	transmembrane protein 70
1	gene	16.688051	16.709611	positive	MGI_C57BL6J_1341909	Ly96	NCBI_Gene:17087,ENSEMBL:ENSMUSG00000025779	MGI:1341909	protein coding gene	lymphocyte antigen 96
1	pseudogene	16.758205	16.758623	negative	MGI_C57BL6J_5580355	Gm29649	ENSEMBL:ENSMUSG00000100093	MGI:5580355	pseudogene	predicted gene 29649
1	pseudogene	16.768279	16.770138	negative	MGI_C57BL6J_3644176	Gm5828	NCBI_Gene:545306,ENSEMBL:ENSMUSG00000091020	MGI:3644176	pseudogene	predicted gene 5828
1	gene	16.898185	17.091631	positive	MGI_C57BL6J_5579082	Gm28376	ENSEMBL:ENSMUSG00000101640	MGI:5579082	lncRNA gene	predicted gene 28376
1	gene	16.930970	16.931796	positive	MGI_C57BL6J_1918145	4921511E07Rik	ENSEMBL:ENSMUSG00000104133	MGI:1918145	unclassified gene	RIKEN cDNA 4921511E07 gene
1	gene	16.942104	17.097904	negative	MGI_C57BL6J_1891495	Jph1	NCBI_Gene:57339,ENSEMBL:ENSMUSG00000042686	MGI:1891495	protein coding gene	junctophilin 1
1	gene	17.097969	17.100793	positive	MGI_C57BL6J_5825722	Gm46085	NCBI_Gene:108167615	MGI:5825722	lncRNA gene	predicted gene, 46085
1	gene	17.098573	17.124568	negative	MGI_C57BL6J_5591141	Gm31982	NCBI_Gene:102634387	MGI:5591141	lncRNA gene	predicted gene, 31982
1	gene	17.120597	17.128971	positive	MGI_C57BL6J_5579489	Gm28783	NCBI_Gene:102634310,ENSEMBL:ENSMUSG00000100110	MGI:5579489	lncRNA gene	predicted gene 28783
1	gene	17.145362	17.164271	positive	MGI_C57BL6J_1338002	Gdap1	NCBI_Gene:14545,ENSEMBL:ENSMUSG00000025777	MGI:1338002	protein coding gene	ganglioside-induced differentiation-associated-protein 1
1	gene	17.168402	17.173109	positive	MGI_C57BL6J_5579490	Gm28784	NCBI_Gene:102634541,ENSEMBL:ENSMUSG00000099899	MGI:5579490	lncRNA gene	predicted gene 28784
1	gene	17.202970	17.205577	positive	MGI_C57BL6J_5622482	Gm39597	NCBI_Gene:105243867	MGI:5622482	lncRNA gene	predicted gene, 39597
1	pseudogene	17.250114	17.250492	negative	MGI_C57BL6J_5579491	Gm28785	ENSEMBL:ENSMUSG00000100272	MGI:5579491	pseudogene	predicted gene 28785
1	pseudogene	17.394460	17.395525	positive	MGI_C57BL6J_3647666	Gm5251	NCBI_Gene:383495,ENSEMBL:ENSMUSG00000100398	MGI:3647666	pseudogene	predicted gene 5251
1	pseudogene	17.397290	17.401340	negative	MGI_C57BL6J_1889580	Rbm6-ps1	NCBI_Gene:108212,ENSEMBL:ENSMUSG00000101589	MGI:1889580	pseudogene	RNA binding motif protein 6, pseudogene 1
1	pseudogene	17.428841	17.429569	negative	MGI_C57BL6J_3648507	Gm6075	NCBI_Gene:606716,ENSEMBL:ENSMUSG00000102048	MGI:3648507	pseudogene	predicted gene 6075
1	gene	17.520001	17.520111	positive	MGI_C57BL6J_5454943	Gm25166	ENSEMBL:ENSMUSG00000089534	MGI:5454943	snoRNA gene	predicted gene, 25166
1	gene	17.601901	17.630939	positive	MGI_C57BL6J_1934659	Pi15	NCBI_Gene:94227,ENSEMBL:ENSMUSG00000067780	MGI:1934659	protein coding gene	peptidase inhibitor 15
1	gene	17.615084	17.641382	negative	MGI_C57BL6J_5578860	Gm28154	NCBI_Gene:102634738,ENSEMBL:ENSMUSG00000100053	MGI:5578860	lncRNA gene	predicted gene 28154
1	gene	17.676027	17.727646	negative	MGI_C57BL6J_3801761	Gm16070	NCBI_Gene:102634913,ENSEMBL:ENSMUSG00000085125	MGI:3801761	lncRNA gene	predicted gene 16070
1	gene	17.727029	17.767235	positive	MGI_C57BL6J_1934666	Crispld1	NCBI_Gene:83691,ENSEMBL:ENSMUSG00000025776	MGI:1934666	protein coding gene	cysteine-rich secretory protein LCCL domain containing 1
1	gene	17.741915	17.944776	negative	MGI_C57BL6J_5578859	Gm28153	NCBI_Gene:105243868,ENSEMBL:ENSMUSG00000099895	MGI:5578859	lncRNA gene	predicted gene 28153
1	pseudogene	17.947002	17.949647	positive	MGI_C57BL6J_3648169	Gm7690	NCBI_Gene:665564,ENSEMBL:ENSMUSG00000100554	MGI:3648169	pseudogene	predicted gene 7690
1	pseudogene	17.992961	17.999624	negative	MGI_C57BL6J_5010960	Gm18775	NCBI_Gene:100417711,ENSEMBL:ENSMUSG00000099473	MGI:5010960	pseudogene	predicted gene, 18775
1	pseudogene	17.993813	17.997483	positive	MGI_C57BL6J_5010154	Gm17969	NCBI_Gene:100416210,ENSEMBL:ENSMUSG00000099591	MGI:5010154	pseudogene	predicted gene, 17969
1	gene	17.994462	18.059056	negative	MGI_C57BL6J_5579462	Gm28756	ENSEMBL:ENSMUSG00000109887	MGI:5579462	lncRNA gene	predicted gene 28756
1	pseudogene	18.005961	18.016186	negative	MGI_C57BL6J_5579461	Gm28755	ENSEMBL:ENSMUSG00000102001	MGI:5579461	pseudogene	predicted gene 28755
1	pseudogene	18.048100	18.058269	negative	MGI_C57BL6J_5804899	Gm45784	ENSEMBL:ENSMUSG00000101717	MGI:5804899	pseudogene	predicted gene 45784
1	gene	18.114884	18.145966	negative	MGI_C57BL6J_1925331	Crisp4	NCBI_Gene:78081,ENSEMBL:ENSMUSG00000025774	MGI:1925331	protein coding gene	cysteine-rich secretory protein 4
1	pseudogene	18.210053	18.223564	negative	MGI_C57BL6J_3646526	Defb44-ps	NCBI_Gene:654454,ENSEMBL:ENSMUSG00000070977	MGI:3646526	pseudogene	defensin beta 44, pseudogene
1	gene	18.236473	18.237443	negative	MGI_C57BL6J_3648148	Defb18	NCBI_Gene:654460,ENSEMBL:ENSMUSG00000073735	MGI:3648148	protein coding gene	defensin beta 18
1	gene	18.250978	18.265138	negative	MGI_C57BL6J_1924923	Defb41	NCBI_Gene:77673,ENSEMBL:ENSMUSG00000067773	MGI:1924923	protein coding gene	defensin beta 41
1	pseudogene	18.262395	18.263379	negative	MGI_C57BL6J_5010022	Gm17837	NCBI_Gene:100415956,ENSEMBL:ENSMUSG00000101685	MGI:5010022	pseudogene	predicted gene, 17837
1	pseudogene	18.708428	18.709338	positive	MGI_C57BL6J_3647664	Gm5252	NCBI_Gene:383499,ENSEMBL:ENSMUSG00000101306	MGI:3647664	pseudogene	predicted gene 5252
1	gene	18.969762	18.969833	negative	MGI_C57BL6J_5453852	Gm24075	ENSEMBL:ENSMUSG00000088800	MGI:5453852	snoRNA gene	predicted gene, 24075
1	pseudogene	19.037266	19.037505	positive	MGI_C57BL6J_5579049	Gm28343	NCBI_Gene:108167808,ENSEMBL:ENSMUSG00000101644	MGI:5579049	pseudogene	predicted gene 28343
1	pseudogene	19.062857	19.063135	positive	MGI_C57BL6J_5579050	Gm28344	ENSEMBL:ENSMUSG00000099433	MGI:5579050	pseudogene	predicted gene 28344
1	gene	19.063300	19.104840	negative	MGI_C57BL6J_3801887	Gm15825	NCBI_Gene:102635013,ENSEMBL:ENSMUSG00000089787	MGI:3801887	lncRNA gene	predicted gene 15825
1	gene	19.103022	19.168592	positive	MGI_C57BL6J_2153466	Tfap2d	NCBI_Gene:226896,ENSEMBL:ENSMUSG00000042596	MGI:2153466	protein coding gene	transcription factor AP-2, delta
1	pseudogene	19.153422	19.153966	negative	MGI_C57BL6J_3710521	Gm10075	ENSEMBL:ENSMUSG00000100720	MGI:3710521	pseudogene	predicted gene 10075
1	gene	19.208914	19.238845	positive	MGI_C57BL6J_104672	Tfap2b	NCBI_Gene:21419,ENSEMBL:ENSMUSG00000025927	MGI:104672	protein coding gene	transcription factor AP-2 beta
1	gene	19.242725	19.243769	positive	MGI_C57BL6J_5579046	Gm28340	ENSEMBL:ENSMUSG00000100538	MGI:5579046	lncRNA gene	predicted gene 28340
1	pseudogene	19.320181	19.320719	negative	MGI_C57BL6J_5579047	Gm28341	NCBI_Gene:108167596,ENSEMBL:ENSMUSG00000101117	MGI:5579047	pseudogene	predicted gene 28341
1	pseudogene	19.330939	19.333675	positive	MGI_C57BL6J_3645366	Gm4849	NCBI_Gene:226901,ENSEMBL:ENSMUSG00000100204	MGI:3645366	pseudogene	predicted gene 4849
1	gene	19.513855	19.513919	negative	MGI_C57BL6J_5454410	Gm24633	ENSEMBL:ENSMUSG00000084668	MGI:5454410	snoRNA gene	predicted gene, 24633
1	gene	19.606089	19.636734	positive	MGI_C57BL6J_5591810	Gm32651	NCBI_Gene:102635266	MGI:5591810	lncRNA gene	predicted gene, 32651
1	gene	19.614269	19.616767	positive	MGI_C57BL6J_5611610	Gm38382	ENSEMBL:ENSMUSG00000102597	MGI:5611610	unclassified gene	predicted gene, 38382
1	gene	20.057779	20.618082	negative	MGI_C57BL6J_2155808	Pkhd1	NCBI_Gene:241035,ENSEMBL:ENSMUSG00000043760	MGI:2155808	protein coding gene	polycystic kidney and hepatic disease 1
1	gene	20.062070	20.065548	negative	MGI_C57BL6J_5610543	Gm37315	ENSEMBL:ENSMUSG00000104095	MGI:5610543	unclassified gene	predicted gene, 37315
1	gene	20.356452	20.392300	positive	MGI_C57BL6J_1922278	4930486I03Rik	NCBI_Gene:75028,ENSEMBL:ENSMUSG00000089914	MGI:1922278	lncRNA gene	RIKEN cDNA 4930486I03 gene
1	pseudogene	20.444258	20.444810	negative	MGI_C57BL6J_3802035	Gm15795	ENSEMBL:ENSMUSG00000090142	MGI:3802035	pseudogene	predicted gene 15795
1	gene	20.444811	20.444912	negative	MGI_C57BL6J_5453939	Gm24162	ENSEMBL:ENSMUSG00000070175	MGI:5453939	snRNA gene	predicted gene, 24162
1	gene	20.669882	20.682958	positive	MGI_C57BL6J_5818206	Lincmd1	NCBI_Gene:105661730	MGI:5818206	lncRNA gene	long intergenic non-protein coding RNA of muscle differentiation 1
1	gene	20.669882	20.684298	positive	MGI_C57BL6J_5579359	Gm28653	ENSEMBL:ENSMUSG00000099906	MGI:5579359	lncRNA gene	predicted gene 28653
1	gene	20.679010	20.679082	positive	MGI_C57BL6J_2676881	Mir206	miRBase:MI0000249,NCBI_Gene:387202,ENSEMBL:ENSMUSG00000065559	MGI:2676881	miRNA gene	microRNA 206
1	gene	20.682769	20.682887	positive	MGI_C57BL6J_3618720	Mir133b	miRBase:MI0000821,NCBI_Gene:723817,ENSEMBL:ENSMUSG00000065480	MGI:3618720	miRNA gene	microRNA 133b
1	gene	20.714277	20.714743	positive	MGI_C57BL6J_1920847	1700113H21Rik	NA	NA	unclassified gene	RIKEN cDNA 1700113H21 gene
1	gene	20.730905	20.734496	positive	MGI_C57BL6J_107364	Il17a	NCBI_Gene:16171,ENSEMBL:ENSMUSG00000025929	MGI:107364	protein coding gene	interleukin 17A
1	gene	20.777146	20.790617	negative	MGI_C57BL6J_2676631	Il17f	NCBI_Gene:257630,ENSEMBL:ENSMUSG00000041872	MGI:2676631	protein coding gene	interleukin 17F
1	gene	20.802968	20.820312	negative	MGI_C57BL6J_101845	Mcm3	NCBI_Gene:17215,ENSEMBL:ENSMUSG00000041859	MGI:101845	protein coding gene	minichromosome maintenance complex component 3
1	pseudogene	20.821331	20.822516	positive	MGI_C57BL6J_5295693	Gm20587	NCBI_Gene:100417924,ENSEMBL:ENSMUSG00000099714	MGI:5295693	pseudogene	predicted gene, 20587
1	gene	20.836661	20.839689	positive	MGI_C57BL6J_5578771	Gm28065	ENSEMBL:ENSMUSG00000102121	MGI:5578771	lncRNA gene	predicted gene 28065
1	gene	20.842535	20.842666	negative	MGI_C57BL6J_5454500	Gm24723	ENSEMBL:ENSMUSG00000088858	MGI:5454500	snoRNA gene	predicted gene, 24723
1	gene	20.888650	20.890473	negative	MGI_C57BL6J_1924991	6720483E21Rik	NCBI_Gene:77741,ENSEMBL:ENSMUSG00000097934	MGI:1924991	lncRNA gene	RIKEN cDNA 6720483E21 gene
1	gene	20.890606	20.939650	positive	MGI_C57BL6J_1921479	Paqr8	NCBI_Gene:74229,ENSEMBL:ENSMUSG00000025931	MGI:1921479	protein coding gene	progestin and adipoQ receptor family member VIII
1	gene	20.915410	20.915540	negative	MGI_C57BL6J_5453948	Gm24171	ENSEMBL:ENSMUSG00000077314	MGI:5453948	snoRNA gene	predicted gene, 24171
1	pseudogene	20.945711	20.946914	positive	MGI_C57BL6J_5578770	Gm28064	ENSEMBL:ENSMUSG00000100929	MGI:5578770	pseudogene	predicted gene 28064
1	gene	20.951550	20.990841	positive	MGI_C57BL6J_1919127	Efhc1	NCBI_Gene:71877,ENSEMBL:ENSMUSG00000041809	MGI:1919127	protein coding gene	EF-hand domain (C-terminal) containing 1
1	gene	20.996299	21.079229	negative	MGI_C57BL6J_1924817	Tram2	NCBI_Gene:170829,ENSEMBL:ENSMUSG00000041779	MGI:1924817	protein coding gene	translocating chain-associating membrane protein 2
1	gene	21.080114	21.081748	positive	MGI_C57BL6J_5578993	Gm28287	ENSEMBL:ENSMUSG00000099971	MGI:5578993	lncRNA gene	predicted gene 28287
1	gene	21.166436	21.230167	positive	MGI_C57BL6J_1922962	Tmem14a	NCBI_Gene:75712,ENSEMBL:ENSMUSG00000025933	MGI:1922962	protein coding gene	transmembrane protein 14A
1	pseudogene	21.178988	21.187427	positive	MGI_C57BL6J_3780862	Gm2693	ENSEMBL:ENSMUSG00000100819	MGI:3780862	pseudogene	predicted gene 2693
1	gene	21.189046	21.195335	negative	MGI_C57BL6J_5592106	Gm32947	NCBI_Gene:102635667	MGI:5592106	lncRNA gene	predicted gene, 32947
1	gene	21.207234	21.271685	negative	MGI_C57BL6J_5579542	Gm28836	NCBI_Gene:102635593,ENSEMBL:ENSMUSG00000099343	MGI:5579542	lncRNA gene	predicted gene 28836
1	gene	21.234722	21.236821	positive	MGI_C57BL6J_5611452	Gm38224	ENSEMBL:ENSMUSG00000102633	MGI:5611452	unclassified gene	predicted gene, 38224
1	gene	21.240585	21.265661	positive	MGI_C57BL6J_95856	Gsta3	NCBI_Gene:14859,ENSEMBL:ENSMUSG00000025934	MGI:95856	protein coding gene	glutathione S-transferase, alpha 3
1	pseudogene	21.271799	21.273127	positive	MGI_C57BL6J_3648114	Gm7094	NCBI_Gene:101056100,ENSEMBL:ENSMUSG00000096375	MGI:3648114	pseudogene	predicted pseudogene 7094
1	pseudogene	21.285246	21.298312	negative	MGI_C57BL6J_3647976	Gm4956	NCBI_Gene:241041,ENSEMBL:ENSMUSG00000025936	MGI:3647976	pseudogene	predicted gene 4956
1	pseudogene	21.312516	21.341388	negative	MGI_C57BL6J_5434073	Gm21909	NCBI_Gene:101056161,ENSEMBL:ENSMUSG00000093963	MGI:5434073	pseudogene	predicted gene, 21909
1	gene	21.349641	21.352200	positive	MGI_C57BL6J_2676610	Khdc1a	NCBI_Gene:368204,ENSEMBL:ENSMUSG00000067750	MGI:2676610	protein coding gene	KH domain containing 1A
1	pseudogene	21.354005	21.355116	positive	MGI_C57BL6J_3840126	Gm16329	ENSEMBL:ENSMUSG00000086194	MGI:3840126	pseudogene	predicted gene 16329
1	pseudogene	21.364803	21.365030	positive	MGI_C57BL6J_3840125	Gm16327	ENSEMBL:ENSMUSG00000094436	MGI:3840125	pseudogene	predicted gene 16327
1	gene	21.368331	21.370845	positive	MGI_C57BL6J_3583007	Khdc1c	NCBI_Gene:433278,ENSEMBL:ENSMUSG00000041722	MGI:3583007	protein coding gene	KH domain containing 1C
1	gene	21.369788	21.381308	negative	MGI_C57BL6J_5592306	Gm33147	NCBI_Gene:102635938	MGI:5592306	lncRNA gene	predicted gene, 33147
1	pseudogene	21.372356	21.374170	positive	MGI_C57BL6J_3780878	Gm2709	NCBI_Gene:100040319,ENSEMBL:ENSMUSG00000085507	MGI:3780878	pseudogene	predicted gene 2709
1	pseudogene	21.379554	21.380419	positive	MGI_C57BL6J_4410373	Gm16533	NCBI_Gene:100379214,ENSEMBL:ENSMUSG00000094926	MGI:4410373	pseudogene	predited gene 16533
1	gene	21.383556	21.386384	positive	MGI_C57BL6J_2138477	Khdc1b	NCBI_Gene:98582,ENSEMBL:ENSMUSG00000085079	MGI:2138477	protein coding gene	KH domain containing 1B
1	pseudogene	21.390906	21.391101	positive	MGI_C57BL6J_3840127	Gm16328	ENSEMBL:ENSMUSG00000085679	MGI:3840127	pseudogene	predicted gene 16328
1	gene	21.398399	21.962650	negative	MGI_C57BL6J_1924937	Kcnq5	NCBI_Gene:226922,ENSEMBL:ENSMUSG00000028033	MGI:1924937	protein coding gene	potassium voltage-gated channel, subfamily Q, member 5
1	gene	21.454691	21.457017	negative	MGI_C57BL6J_5610177	Gm36949	ENSEMBL:ENSMUSG00000104138	MGI:5610177	unclassified gene	predicted gene, 36949
1	pseudogene	21.511867	21.513096	negative	MGI_C57BL6J_3648029	Gm7658	NCBI_Gene:665489,ENSEMBL:ENSMUSG00000082935	MGI:3648029	pseudogene	predicted gene 7658
1	gene	21.804147	21.806024	negative	MGI_C57BL6J_2442969	A630064C07Rik	NA	NA	unclassified gene	RIKEN cDNA A630064C07 gene
1	gene	21.838948	21.840514	negative	MGI_C57BL6J_5611471	Gm38243	ENSEMBL:ENSMUSG00000103748	MGI:5611471	unclassified gene	predicted gene, 38243
1	gene	21.952103	21.953458	negative	MGI_C57BL6J_1923344	5830474E16Rik	NA	NA	unclassified gene	RIKEN cDNA 5830474E16 gene
1	gene	21.959842	21.962530	positive	MGI_C57BL6J_5477074	Gm26580	ENSEMBL:ENSMUSG00000097109	MGI:5477074	lncRNA gene	predicted gene, 26580
1	pseudogene	22.030053	22.030615	negative	MGI_C57BL6J_3647717	Gm5696	NCBI_Gene:435612,ENSEMBL:ENSMUSG00000099692	MGI:3647717	pseudogene	predicted gene 5696
1	pseudogene	22.237849	22.238295	positive	MGI_C57BL6J_5578945	Gm28239	ENSEMBL:ENSMUSG00000100418	MGI:5578945	pseudogene	predicted gene 28239
1	gene	22.286251	22.805994	negative	MGI_C57BL6J_2152971	Rims1	NCBI_Gene:116837,ENSEMBL:ENSMUSG00000041670	MGI:2152971	protein coding gene	regulating synaptic membrane exocytosis 1
1	pseudogene	22.740764	22.741565	positive	MGI_C57BL6J_5477360	Gm26866	ENSEMBL:ENSMUSG00000097642	MGI:5477360	pseudogene	predicted gene, 26866
1	gene	22.898387	22.905081	positive	MGI_C57BL6J_3646486	Gm7759	NCBI_Gene:665725	MGI:3646486	unclassified gene	predicted gene 7759
1	pseudogene	22.984817	22.987125	negative	MGI_C57BL6J_3643583	Gm7761	NCBI_Gene:665731,ENSEMBL:ENSMUSG00000101468	MGI:3643583	pseudogene	predicted gene 7761
1	gene	23.048295	23.235673	negative	MGI_C57BL6J_5580212	Gm29506	NCBI_Gene:102632273,ENSEMBL:ENSMUSG00000101227	MGI:5580212	lncRNA gene	predicted gene 29506
1	gene	23.100473	23.102253	negative	MGI_C57BL6J_1914005	Ppp1r14bl	NCBI_Gene:66755,ENSEMBL:ENSMUSG00000073730	MGI:1914005	protein coding gene	protein phosphatase 1, regulatory inhibitor subunit 14B like
1	gene	23.123989	23.127725	positive	MGI_C57BL6J_5589601	Gm30442	NCBI_Gene:102632345	MGI:5589601	lncRNA gene	predicted gene, 30442
1	gene	23.245211	23.245331	positive	MGI_C57BL6J_5453953	Gm24176	ENSEMBL:ENSMUSG00000089553	MGI:5453953	snoRNA gene	predicted gene, 24176
1	gene	23.255685	23.256407	negative	MGI_C57BL6J_3644588	Gm6420	ENSEMBL:ENSMUSG00000102766	MGI:3644588	protein coding gene	predicted gene 6420
1	gene	23.272269	23.272339	positive	MGI_C57BL6J_2676907	Mir30a	miRBase:MI0000144,NCBI_Gene:387225,ENSEMBL:ENSMUSG00000065405	MGI:2676907	miRNA gene	microRNA 30a
1	gene	23.291537	23.291935	positive	MGI_C57BL6J_5504143	Gm27028	ENSEMBL:ENSMUSG00000097970	MGI:5504143	lncRNA gene	predicted gene, 27028
1	gene	23.291701	23.291784	positive	MGI_C57BL6J_3619048	Mir30c-2	miRBase:MI0000548,NCBI_Gene:723964,ENSEMBL:ENSMUSG00000065567	MGI:3619048	miRNA gene	microRNA 30c-2
1	gene	23.293729	23.294075	positive	MGI_C57BL6J_5579813	Gm29107	ENSEMBL:ENSMUSG00000100775	MGI:5579813	lncRNA gene	predicted gene 29107
1	pseudogene	23.345956	23.346599	negative	MGI_C57BL6J_5434309	Gm20954	NCBI_Gene:100418001,ENSEMBL:ENSMUSG00000101226	MGI:5434309	pseudogene	predicted gene, 20954
1	gene	23.366424	23.397772	negative	MGI_C57BL6J_1917405	Ogfrl1	NCBI_Gene:70155,ENSEMBL:ENSMUSG00000026158	MGI:1917405	protein coding gene	opioid growth factor receptor-like 1
1	gene	23.391678	23.399959	negative	MGI_C57BL6J_5011858	Gm19673	NCBI_Gene:100503399	MGI:5011858	lncRNA gene	predicted gene, 19673
1	pseudogene	23.479520	23.480729	positive	MGI_C57BL6J_3645448	Gm7784	NCBI_Gene:665782,ENSEMBL:ENSMUSG00000097920	MGI:3645448	pseudogene	predicted gene 7784
1	gene	23.574443	23.596862	positive	MGI_C57BL6J_5579528	Gm28822	NCBI_Gene:105243890,ENSEMBL:ENSMUSG00000099503	MGI:5579528	lncRNA gene	predicted gene 28822
1	gene	23.761753	23.849158	positive	MGI_C57BL6J_2389490	B3gat2	NCBI_Gene:280645,ENSEMBL:ENSMUSG00000026156	MGI:2389490	protein coding gene	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
1	gene	23.844825	23.922450	negative	MGI_C57BL6J_2138261	Smap1	NCBI_Gene:98366,ENSEMBL:ENSMUSG00000026155	MGI:2138261	protein coding gene	small ArfGAP 1
1	gene	23.978191	24.005894	positive	MGI_C57BL6J_5477018	Gm26524	NCBI_Gene:105243891,ENSEMBL:ENSMUSG00000102495	MGI:5477018	lncRNA gene	predicted gene, 26524
1	gene	23.995939	24.005656	negative	MGI_C57BL6J_1915252	Sdhaf4	NCBI_Gene:68002,ENSEMBL:ENSMUSG00000026154	MGI:1915252	protein coding gene	succinate dehydrogenase complex assembly factor 4
1	gene	24.010758	24.100460	negative	MGI_C57BL6J_1915437	Fam135a	NCBI_Gene:68187,ENSEMBL:ENSMUSG00000026153	MGI:1915437	protein coding gene	family with sequence similarity 135, member A
1	pseudogene	24.071917	24.073152	positive	MGI_C57BL6J_5589915	Gm30756	NCBI_Gene:102632768	MGI:5589915	pseudogene	predicted gene, 30756
1	gene	24.100625	24.103424	positive	MGI_C57BL6J_5610808	Gm37580	ENSEMBL:ENSMUSG00000102398	MGI:5610808	unclassified gene	predicted gene, 37580
1	pseudogene	24.125275	24.126141	positive	MGI_C57BL6J_5477101	Gm26607	ENSEMBL:ENSMUSG00000097670	MGI:5477101	pseudogene	predicted gene, 26607
1	gene	24.177589	24.252738	positive	MGI_C57BL6J_88465	Col9a1	NCBI_Gene:12839,ENSEMBL:ENSMUSG00000026147	MGI:88465	protein coding gene	collagen, type IX, alpha 1
1	gene	24.257683	24.587535	negative	MGI_C57BL6J_1095415	Col19a1	NCBI_Gene:12823,ENSEMBL:ENSMUSG00000026141	MGI:1095415	protein coding gene	collagen, type XIX, alpha 1
1	gene	24.548841	24.548977	negative	MGI_C57BL6J_5456195	Gm26418	ENSEMBL:ENSMUSG00000077463	MGI:5456195	snoRNA gene	predicted gene, 26418
1	gene	24.586581	24.587739	positive	MGI_C57BL6J_3780964	Gm2795	NA	NA	unclassified gene	predicted gene 2795
1	pseudogene	24.593931	24.595489	negative	MGI_C57BL6J_3723458	Tubb4b-ps2	NCBI_Gene:665829,ENSEMBL:ENSMUSG00000099997	MGI:3723458	pseudogene	tubulin, beta 4B class IVB, pseudogene 2
1	pseudogene	24.611535	24.612410	negative	MGI_C57BL6J_5579145	Gm28439	ENSEMBL:ENSMUSG00000100131	MGI:5579145	pseudogene	predicted gene 28439
1	pseudogene	24.612404	24.612700	negative	MGI_C57BL6J_3642643	Gm10222	NCBI_Gene:100142658,ENSEMBL:ENSMUSG00000067736	MGI:3642643	pseudogene	predicted gene 10222
1	pseudogene	24.612775	24.613119	negative	MGI_C57BL6J_5579144	Gm28438	ENSEMBL:ENSMUSG00000101939	MGI:5579144	pseudogene	predicted gene 28438
1	pseudogene	24.613189	24.613971	negative	MGI_C57BL6J_5579143	Gm28437	ENSEMBL:ENSMUSG00000101111	MGI:5579143	pseudogene	predicted gene 28437
1	pseudogene	24.613971	24.614651	negative	MGI_C57BL6J_3809095	Gm10925	NCBI_Gene:100503946,ENSEMBL:ENSMUSG00000100862	MGI:3809095	pseudogene	predicted gene 10925
1	pseudogene	24.614885	24.615565	negative	MGI_C57BL6J_5579367	Gm28661	ENSEMBL:ENSMUSG00000102070	MGI:5579367	pseudogene	predicted gene 28661
1	pseudogene	24.615706	24.616197	negative	MGI_C57BL6J_5579922	Gm29216	ENSEMBL:ENSMUSG00000101249	MGI:5579922	pseudogene	predicted gene 29216
1	gene	24.678042	24.766301	positive	MGI_C57BL6J_1915671	Lmbrd1	NCBI_Gene:68421,ENSEMBL:ENSMUSG00000073725	MGI:1915671	protein coding gene	LMBR1 domain containing 1
1	pseudogene	24.910461	24.911659	negative	MGI_C57BL6J_5579300	Gm28594	ENSEMBL:ENSMUSG00000100808	MGI:5579300	pseudogene	predicted gene 28594
1	gene	24.963209	24.965158	negative	MGI_C57BL6J_5578943	Gm28237	ENSEMBL:ENSMUSG00000100483	MGI:5578943	lncRNA gene	predicted gene 28237
1	pseudogene	25.011941	25.012759	positive	MGI_C57BL6J_3779853	Gm9443	NCBI_Gene:669171,ENSEMBL:ENSMUSG00000100450	MGI:3779853	pseudogene	predicted gene 9443
1	gene	25.026581	25.027593	negative	MGI_C57BL6J_5580120	Gm29414	NCBI_Gene:105243892,ENSEMBL:ENSMUSG00000099392	MGI:5580120	lncRNA gene	predicted gene 29414
1	gene	25.067476	25.830205	negative	MGI_C57BL6J_2441837	Adgrb3	NCBI_Gene:210933,ENSEMBL:ENSMUSG00000033569	MGI:2441837	protein coding gene	adhesion G protein-coupled receptor B3
1	pseudogene	25.223730	25.224173	positive	MGI_C57BL6J_3783142	Gm15702	ENSEMBL:ENSMUSG00000080849	MGI:3783142	pseudogene	predicted gene 15702
1	gene	25.276404	25.277954	negative	MGI_C57BL6J_5012357	Gm20172	NCBI_Gene:100504323,ENSEMBL:ENSMUSG00000104257	MGI:5012357	protein coding gene	predicted gene, 20172
1	gene	25.279445	25.279551	negative	MGI_C57BL6J_5452037	Gm22260	ENSEMBL:ENSMUSG00000096866	MGI:5452037	snRNA gene	predicted gene, 22260
1	gene	25.284218	25.285248	negative	MGI_C57BL6J_5610771	Gm37543	ENSEMBL:ENSMUSG00000102296	MGI:5610771	unclassified gene	predicted gene, 37543
1	gene	25.296512	25.299886	negative	MGI_C57BL6J_5610559	Gm37331	ENSEMBL:ENSMUSG00000103209	MGI:5610559	unclassified gene	predicted gene, 37331
1	gene	25.314276	25.317708	negative	MGI_C57BL6J_5610439	Gm37211	ENSEMBL:ENSMUSG00000104027	MGI:5610439	unclassified gene	predicted gene, 37211
1	gene	25.325866	25.328398	negative	MGI_C57BL6J_5611090	Gm37862	ENSEMBL:ENSMUSG00000102407	MGI:5611090	unclassified gene	predicted gene, 37862
1	gene	25.345978	25.349082	negative	MGI_C57BL6J_5611514	Gm38286	ENSEMBL:ENSMUSG00000103214	MGI:5611514	unclassified gene	predicted gene, 38286
1	gene	25.362564	25.365820	negative	MGI_C57BL6J_5611108	Gm37880	ENSEMBL:ENSMUSG00000104100	MGI:5611108	unclassified gene	predicted gene, 37880
1	gene	25.451071	25.451174	positive	MGI_C57BL6J_5455071	Gm25294	ENSEMBL:ENSMUSG00000084740	MGI:5455071	snRNA gene	predicted gene, 25294
1	gene	25.608250	25.611184	negative	MGI_C57BL6J_5610239	Gm37011	ENSEMBL:ENSMUSG00000103889	MGI:5610239	unclassified gene	predicted gene, 37011
1	pseudogene	25.614946	25.615515	negative	MGI_C57BL6J_5579920	Gm29214	ENSEMBL:ENSMUSG00000101301	MGI:5579920	pseudogene	predicted gene 29214
1	gene	25.620238	25.623180	negative	MGI_C57BL6J_5610279	Gm37051	ENSEMBL:ENSMUSG00000104221	MGI:5610279	unclassified gene	predicted gene, 37051
1	gene	25.672245	25.676239	negative	MGI_C57BL6J_5611488	Gm38260	ENSEMBL:ENSMUSG00000102250	MGI:5611488	unclassified gene	predicted gene, 38260
1	gene	25.686062	25.691501	negative	MGI_C57BL6J_5610856	Gm37628	ENSEMBL:ENSMUSG00000102317	MGI:5610856	unclassified gene	predicted gene, 37628
1	gene	25.722038	25.724778	negative	MGI_C57BL6J_2442299	8030445P17Rik	ENSEMBL:ENSMUSG00000103563	MGI:2442299	unclassified gene	RIKEN cDNA 8030445P17 gene
1	gene	25.735389	25.738969	negative	MGI_C57BL6J_5611426	Gm38198	ENSEMBL:ENSMUSG00000102465	MGI:5611426	unclassified gene	predicted gene, 38198
1	gene	25.755343	25.759033	negative	MGI_C57BL6J_5610305	Gm37077	ENSEMBL:ENSMUSG00000102659	MGI:5610305	unclassified gene	predicted gene, 37077
1	gene	25.775757	25.780306	negative	MGI_C57BL6J_5611123	Gm37895	ENSEMBL:ENSMUSG00000103924	MGI:5611123	unclassified gene	predicted gene, 37895
1	gene	25.797281	25.800905	negative	MGI_C57BL6J_5610180	Gm36952	ENSEMBL:ENSMUSG00000104132	MGI:5610180	unclassified gene	predicted gene, 36952
1	gene	25.804097	25.807406	negative	MGI_C57BL6J_5610830	Gm37602	ENSEMBL:ENSMUSG00000102747	MGI:5610830	unclassified gene	predicted gene, 37602
1	gene	25.808956	25.809972	negative	MGI_C57BL6J_1920201	2900022M07Rik	ENSEMBL:ENSMUSG00000102386	MGI:1920201	unclassified gene	RIKEN cDNA 2900022M07 gene
1	gene	25.824390	25.824719	negative	MGI_C57BL6J_1925574	2900002M20Rik	ENSEMBL:ENSMUSG00000103004	MGI:1925574	unclassified gene	RIKEN cDNA 2900002M20 gene
1	gene	25.830419	25.837285	positive	MGI_C57BL6J_3642830	Gm9884	NCBI_Gene:108167844,ENSEMBL:ENSMUSG00000104516	MGI:3642830	lncRNA gene	predicted gene 9884
1	gene	25.879168	25.892305	positive	MGI_C57BL6J_5622499	Gm39614	NCBI_Gene:105243893	MGI:5622499	lncRNA gene	predicted gene, 39614
1	gene	25.896970	25.903608	negative	MGI_C57BL6J_5590235	Gm31076	NCBI_Gene:102633186	MGI:5590235	lncRNA gene	predicted gene, 31076
1	pseudogene	25.993020	25.994166	negative	MGI_C57BL6J_5011256	Gm19071	NCBI_Gene:100418203	MGI:5011256	pseudogene	predicted gene, 19071
1	pseudogene	25.996604	25.997159	negative	MGI_C57BL6J_5010628	Gm18443	NCBI_Gene:100417198,ENSEMBL:ENSMUSG00000101618	MGI:5010628	pseudogene	predicted gene, 18443
1	pseudogene	26.466236	26.466886	positive	MGI_C57BL6J_5011308	Gm19123	NCBI_Gene:100418295,ENSEMBL:ENSMUSG00000099458	MGI:5011308	pseudogene	predicted gene, 19123
1	gene	26.566833	26.566938	positive	MGI_C57BL6J_5453841	Gm24064	ENSEMBL:ENSMUSG00000088111	MGI:5453841	snoRNA gene	predicted gene, 24064
1	gene	26.619658	26.775020	positive	MGI_C57BL6J_5590295	Gm31136	NCBI_Gene:102633272	MGI:5590295	lncRNA gene	predicted gene, 31136
1	gene	26.681801	26.687460	negative	MGI_C57BL6J_3588222	4931408C20Rik	NCBI_Gene:210940,ENSEMBL:ENSMUSG00000073722	MGI:3588222	protein coding gene	RIKEN cDNA 4931408C20 gene
1	gene	26.959103	26.959221	negative	MGI_C57BL6J_4422074	n-R5s209	ENSEMBL:ENSMUSG00000095256	MGI:4422074	rRNA gene	nuclear encoded rRNA 5S 209
1	pseudogene	27.336352	27.336768	negative	MGI_C57BL6J_5011826	Gm19641	ENSEMBL:ENSMUSG00000100310	MGI:5011826	pseudogene	predicted gene, 19641
1	pseudogene	27.787873	27.788664	negative	MGI_C57BL6J_5010364	Gm18179	NCBI_Gene:100416668	MGI:5010364	pseudogene	predicted gene, 18179
1	gene	27.884014	27.902396	positive	MGI_C57BL6J_3646041	Gm5524	NCBI_Gene:433281,ENSEMBL:ENSMUSG00000101514	MGI:3646041	lncRNA gene	predicted gene 5524
1	pseudogene	27.900419	27.901072	negative	MGI_C57BL6J_5010961	Gm18776	NCBI_Gene:100417712,ENSEMBL:ENSMUSG00000101033	MGI:5010961	pseudogene	predicted gene, 18776
1	pseudogene	27.989910	27.991782	positive	MGI_C57BL6J_5011213	Gm19028	NCBI_Gene:100418140,ENSEMBL:ENSMUSG00000101372	MGI:5011213	pseudogene	predicted gene, 19028
1	gene	28.569918	28.571431	positive	MGI_C57BL6J_5611317	Gm38089	ENSEMBL:ENSMUSG00000103241	MGI:5611317	unclassified gene	predicted gene, 38089
1	gene	28.569918	28.571431	negative	MGI_C57BL6J_1923427	6330565B04Rik	NA	NA	unclassified non-coding RNA gene	RIKEN cDNA 6330565B04 gene
1	pseudogene	28.580381	28.580772	negative	MGI_C57BL6J_3645212	Gm7846	NCBI_Gene:665903,ENSEMBL:ENSMUSG00000086240	MGI:3645212	pseudogene	predicted gene 7846
1	gene	28.776117	28.780252	negative	MGI_C57BL6J_2685443	Gm597	NCBI_Gene:210962,ENSEMBL:ENSMUSG00000048411	MGI:2685443	protein coding gene	predicted gene 597
1	gene	28.796145	28.895588	negative	MGI_C57BL6J_5825579	Gm45942	NCBI_Gene:108167331	MGI:5825579	lncRNA gene	predicted gene, 45942
1	pseudogene	28.800240	28.802802	negative	MGI_C57BL6J_3649021	Gm5697	NCBI_Gene:435614,ENSEMBL:ENSMUSG00000081557	MGI:3649021	pseudogene	predicted gene 5697
1	pseudogene	28.938035	28.938340	positive	MGI_C57BL6J_3647053	Gm6462	NCBI_Gene:623924,ENSEMBL:ENSMUSG00000058590	MGI:3647053	pseudogene	predicted gene 6462

Interactive term

operm <- scan1perm(pr.qc, covars["rz.age"], model="normal", addcovar=addcovar, intcovar=addcovar, n_perm=10, perm_Xsp=TRUE, chr_lengths=chr_lengths(gm$gmap))

summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))
names(summary_table) <- c("autosomes","X")
summary_table$significance.level <- rownames(summary_table)

rownames(summary_table) <- NULL

summary_table[c(3,1:2)] %>%
  kable(escape = F,align = c("ccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

significance.level	autosomes	X
0.01	3.762024	5.273999
0.05	3.753342	4.885014
0.1	3.742475	4.394429

#summary_table<-data.frame(unclass(summary(operm, alpha=c(0.01,  0.05, 0.1))))

plot_lod<-function(out,map){
  for (i in 1:dim(out)[2]){
    #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/",colnames(out)[i],  "_lod.png"))
    
    #par(mar=c(5.1, 6.1, 1.1, 1.1))
    ymx <- maxlod(out) # overall maximum LOD score
    plot(out, gm$gmap, lodcolumn=i, col="slateblue", ylim=c(0, ymx+0.5))
    legend("topright", lwd=2, colnames(out)[i], bg="gray90")
    title(main = paste0(colnames(out)[i]," - ICI vs. EOI (with interactive)"))
    #for (j in 1: dim(summary_table)[1]){
    #  abline(h=summary_table[j, i],col="red")
    #  text(x=400, y =summary_table[j, i]+0.12, labels = paste("p=", row.names(summary_table)[j]))
    #}
    #dev.off()
  }
}


print("with no kinship")

[1] “with no kinship”

outfi <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, addcovar=addcovar, intcovar=addcovar, model="normal")

outf.new <- outfi-outfa

plot_lod(outfi,gm$gmap)

print("with normal kinship")

[1] “with normal kinship”

outki <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar, kinship=kinship)

#plot_lod(outki,gm$gmap)

outk.new <- outki-outka

plot_lod(outk.new,gm$gmap)

print("with loco kinship")

[1] “with loco kinship”

outi <- scan1(pr.qc, covars["rz.age"], Xcovar=Xcovar, model="normal", addcovar=addcovar, intcovar=addcovar, kinship=K)

#plot_lod(outi,gm$gmap)

out.new <- outi-outa

plot_lod(out.new,gm$gmap)

out = out.new

peaks<-find_peaks(out, gm$gmap, threshold=2, drop=1.5)

rownames(peaks) <- NULL
peaks[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	rz.age	1	4.259	2.591067	1.562	9.574

peaks_mbl <- list()
#corresponding info in Mb
for(i in 1:nrow(peaks)){
  lodindex <- peaks$lodindex[i]
  lodcolumn <- peaks$lodcolumn[i]
  chr <- as.character(peaks$chr[i])
  lod <- peaks$lod[i]
  mark <- find_marker(gm$gmap, chr=chr,pos=peaks$pos[i])
  pos <- mapdf[mapdf$marker==mark,]$pmapdf
  ci_lo <- mapdfnd$pmapdf[which(mapdfnd$gmapdf == peaks$ci_lo[i] & mapdfnd$chr == peaks$chr[i])]
  ci_hi <- mapdfnd$pmapdf[which(mapdfnd$gmapdf == peaks$ci_hi[i] & mapdfnd$chr == peaks$chr[i])]
  peaks_mb=cbind(lodindex, lodcolumn, chr, pos, lod, ci_lo, ci_hi)
  peaks_mbl[[i]] <- peaks_mb
}
peaks_mba <- do.call(rbind, peaks_mbl)
peaks_mba <- as.data.frame(peaks_mba)
#peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")] <- sapply(peaks_mba[,c("chr", "pos", "lod", "ci_lo", "ci_hi")], as.numeric)

rownames(peaks_mba) <- NULL
peaks_mba[] %>%
  kable(escape = F,align = c("ccccccc")) %>%
  kable_styling("striped", full_width = T) %>%
  column_spec(1, bold=TRUE)

lodindex	lodcolumn	chr	pos	lod	ci_lo	ci_hi
1	rz.age	1	13.855369	2.59106718420644	3.135418	23.377583

for (i in 1:nrow(peaks)){
#for (i in 1:1){
  #Plot 1
  marker = find_marker(gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i])
  #g <- maxmarg(pr.qc, gm$gmap, chr=peaks$chr[i], pos=peaks$pos[i], return_char=TRUE, minprob = 0.5)
  gp <- g[,marker]
  gp[gp==1] <- "AA"
  gp[gp==2] <- "AB"
  gp[gp==0] <- NA
  #png(filename=paste0("/Users/chenm/Documents/qtl/Jai/","qtl_effect_", i, ".png"))
  #par(mar=c(4.1, 4.1, 1.5, 0.6))
  plot_pxg(gp, covars[,peaks$lodcolumn[i]], ylab=peaks$lodcolumn[i], sort=FALSE)
  title(main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")"), line=0.2)
  ##dev.off()

  chr = peaks$chr[i]

# Plot 2
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar)
  #coeff <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], Xcovar=Xcovar)
  coeff <- scan1coef(pr.qc[,chr], covars[peaks$lodcolumn[i]], addcovar=addcovar, intcovar=addcovar, kinship=K[[chr]])
  blup <- scan1blup(pr.qc[,chr], covars[peaks$lodcolumn[i]], addcovar=addcovar, kinship=K[[chr]])

  #plot_coef(coeff, 
  #     gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i]," [scan1coeff])")
  #     )

  plot_coef(blup, 
       gm$gmap[chr], columns=1:2,
       bgcolor="gray95", legend="bottomleft", 
       main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i]," [scan1blup])")
       )
  #last_coef <- unclass(coeff)[nrow(coeff),1:3]
  #for(t in seq(along=last_coef))
  #axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


 # Plot 3
  #c2effB <- scan1coef(pr.qc[,chr], covars[peaks$lodcolumn[i]], model="binary", contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  #c2effBb <- scan1blup(pr.qc[,chr], covars[peaks$lodcolumn[i]], contrasts=cbind(a=c(-1, 0), d=c(0, -1)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]], addcovar = addcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  ##c2effB <- scan1coef(pr[,chr], cross$pheno[,peaks$lodcolumn[i]],Xcovar=Xcovar, contrasts=cbind(mu=c(1,1,1), a=c(-1, 0, 1), d=c(0, 1, 0)))
  #plot(c2effB, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  #plot(c2effBb, gm$gmap[chr], columns=1:2,
  #     bgcolor="gray95", legend="bottomleft", 
  #     main = paste("chr", chr=peaks$chr[i], "pos", peaks$pos[i], "(",peaks$lodcolumn[i],")")
  #     )
  ##last_coef <- unclass(c2effB)[nrow(c2effB),2:3] # last two coefficients
  ##for(t in seq(along=last_coef))
  ##  axis(side=4, at=last_coef[t], names(last_coef)[t], tick=FALSE)


  #Table 1
  chr = peaks_mba$chr[i]
  start=as.numeric(peaks_mba$ci_lo[i])
  end=as.numeric(peaks_mba$ci_hi[i])

  genesgss = query_genes(chr, start, end)

  rownames(genesgss) <- NULL
  genesgss$strand_old = genesgss$strand
  genesgss$strand[genesgss$strand=="+"] <- "positive"
  genesgss$strand[genesgss$strand=="-"] <- "negative"

  print(kable(genesgss[,c("chr","type","start","stop","strand","ID","Name","Dbxref","gene_id","mgi_type","description")], "html") %>% kable_styling("striped", full_width = T))


}

chr	type	start	stop	strand	ID	Name	Dbxref	gene_id	mgi_type	description
1	gene	3.199733	3.672278	negative	MGI_C57BL6J_3528744	Xkr4	NCBI_Gene:497097,ENSEMBL:ENSMUSG00000051951	MGI:3528744	protein coding gene	X-linked Kx blood group related 4
1	pseudogene	3.252734	3.253236	positive	MGI_C57BL6J_5011141	Gm18956	NCBI_Gene:100418032,ENSEMBL:ENSMUSG00000102851	MGI:5011141	pseudogene	predicted gene, 18956
1	gene	3.361552	3.377812	positive	MGI_C57BL6J_5622470	Gm39585	NCBI_Gene:105243853	MGI:5622470	lncRNA gene	predicted gene, 39585
1	gene	3.365731	3.368549	negative	MGI_C57BL6J_5610408	Gm37180	ENSEMBL:ENSMUSG00000103377	MGI:5610408	unclassified gene	predicted gene, 37180
1	gene	3.375556	3.377788	negative	MGI_C57BL6J_5610591	Gm37363	ENSEMBL:ENSMUSG00000104017	MGI:5610591	unclassified gene	predicted gene, 37363
1	gene	3.464977	3.467285	negative	MGI_C57BL6J_5610914	Gm37686	ENSEMBL:ENSMUSG00000103025	MGI:5610914	unclassified gene	predicted gene, 37686
1	gene	3.466587	3.513553	positive	MGI_C57BL6J_3780162	Gm1992	ENSEMBL:ENSMUSG00000089699	MGI:3780162	lncRNA gene	predicted gene 1992
1	gene	3.512451	3.514507	negative	MGI_C57BL6J_5610557	Gm37329	ENSEMBL:ENSMUSG00000103201	MGI:5610557	unclassified gene	predicted gene, 37329
1	pseudogene	3.531795	3.532736	positive	MGI_C57BL6J_3648497	Gm7341	NCBI_Gene:664792,ENSEMBL:ENSMUSG00000103147	MGI:3648497	pseudogene	predicted gene 7341
1	gene	3.592892	3.595903	negative	MGI_C57BL6J_5611376	Gm38148	ENSEMBL:ENSMUSG00000103161	MGI:5611376	unclassified gene	predicted gene, 38148
1	gene	3.647309	3.658904	negative	MGI_C57BL6J_5012123	Gm19938	ENSEMBL:ENSMUSG00000102331	MGI:5012123	lncRNA gene	predicted gene, 19938
1	gene	3.680155	3.681788	positive	MGI_C57BL6J_3642703	Gm10568	ENSEMBL:ENSMUSG00000102348	MGI:3642703	unclassified gene	predicted gene 10568
1	gene	3.752010	3.754360	positive	MGI_C57BL6J_5611613	Gm38385	ENSEMBL:ENSMUSG00000102592	MGI:5611613	unclassified gene	predicted gene, 38385
1	gene	3.783876	3.783933	negative	MGI_C57BL6J_5530778	Gm27396	ENSEMBL:ENSMUSG00000088333	MGI:5530778	snRNA gene	predicted gene, 27396
1	gene	3.905739	3.986215	negative	MGI_C57BL6J_5610609	Gm37381	ENSEMBL:ENSMUSG00000102343	MGI:5610609	lncRNA gene	predicted gene, 37381
1	gene	3.999557	4.409266	negative	MGI_C57BL6J_1341105	Rp1	NCBI_Gene:19888,ENSEMBL:ENSMUSG00000025900	MGI:1341105	protein coding gene	retinitis pigmentosa 1 (human)
1	gene	4.115673	4.243365	negative	MGI_C57BL6J_5621602	Gm38717	NCBI_Gene:105242467	MGI:5621602	protein coding gene	predicted gene, 38717
1	pseudogene	4.256234	4.261541	negative	MGI_C57BL6J_3644986	Gm6101	NCBI_Gene:619785,ENSEMBL:ENSMUSG00000102948	MGI:3644986	pseudogene	predicted gene 6101
1	gene	4.363346	4.364829	negative	MGI_C57BL6J_5610711	Gm37483	ENSEMBL:ENSMUSG00000104123	MGI:5610711	unclassified gene	predicted gene, 37483
1	gene	4.490928	4.497386	negative	MGI_C57BL6J_107543	Sox17	NCBI_Gene:20671,ENSEMBL:ENSMUSG00000025902	MGI:107543	protein coding gene	SRY (sex determining region Y)-box 17
1	gene	4.496551	4.499558	positive	MGI_C57BL6J_5610815	Gm37587	ENSEMBL:ENSMUSG00000104238	MGI:5610815	lncRNA gene	predicted gene, 37587
1	pseudogene	4.522817	4.526931	positive	MGI_C57BL6J_3643257	Gm7357	NCBI_Gene:664830,ENSEMBL:ENSMUSG00000102269	MGI:3643257	pseudogene	predicted gene 7357
1	gene	4.529017	4.529123	positive	MGI_C57BL6J_5452084	Gm22307	ENSEMBL:ENSMUSG00000096126	MGI:5452084	snRNA gene	predicted gene, 22307
1	pseudogene	4.534837	4.535286	negative	MGI_C57BL6J_5611304	Gm38076	ENSEMBL:ENSMUSG00000103003	MGI:5611304	pseudogene	predicted gene, 38076
1	gene	4.583127	4.608781	negative	MGI_C57BL6J_5610551	Gm37323	NCBI_Gene:108167609,ENSEMBL:ENSMUSG00000104328	MGI:5610551	lncRNA gene	predicted gene, 37323
1	gene	4.595057	4.602832	positive	MGI_C57BL6J_5622471	Gm39586	NCBI_Gene:105243854	MGI:5622471	lncRNA gene	predicted gene, 39586
1	gene	4.603255	4.606521	negative	MGI_C57BL6J_5825719	Gm46082	NCBI_Gene:108167610	MGI:5825719	lncRNA gene	predicted gene, 46082
1	gene	4.608937	4.617805	positive	MGI_C57BL6J_5589033	Gm29874	NCBI_Gene:102631571	MGI:5589033	lncRNA gene	predicted gene, 29874
1	pseudogene	4.610244	4.611629	positive	MGI_C57BL6J_3643485	Gm7369	NCBI_Gene:664853,ENSEMBL:ENSMUSG00000102735	MGI:3643485	pseudogene	predicted gene 7369
1	pseudogene	4.687934	4.689409	negative	MGI_C57BL6J_3646770	Gm6085	NCBI_Gene:619596,ENSEMBL:ENSMUSG00000098104	MGI:3646770	pseudogene	predicted gene 6085
1	pseudogene	4.692219	4.693424	negative	MGI_C57BL6J_3644547	Gm6119	NCBI_Gene:619980,ENSEMBL:ENSMUSG00000102175	MGI:3644547	pseudogene	predicted gene 6119
1	gene	4.723277	4.723379	negative	MGI_C57BL6J_5455270	Gm25493	ENSEMBL:ENSMUSG00000088000	MGI:5455270	snRNA gene	predicted gene, 25493
1	pseudogene	4.735046	4.735679	negative	MGI_C57BL6J_3780221	Gm2053	NCBI_Gene:100039121,ENSEMBL:ENSMUSG00000103265	MGI:3780221	pseudogene	predicted gene 2053
1	pseudogene	4.771105	4.772393	positive	MGI_C57BL6J_3647047	Gm6123	NCBI_Gene:620009,ENSEMBL:ENSMUSG00000103922	MGI:3647047	pseudogene	predicted gene 6123
1	gene	4.773198	4.785749	negative	MGI_C57BL6J_1351639	Mrpl15	NCBI_Gene:27395,ENSEMBL:ENSMUSG00000033845	MGI:1351639	protein coding gene	mitochondrial ribosomal protein L15
1	gene	4.778063	4.779212	negative	MGI_C57BL6J_5610372	Gm37144	ENSEMBL:ENSMUSG00000102275	MGI:5610372	unclassified gene	predicted gene, 37144
1	gene	4.807560	4.848410	positive	MGI_C57BL6J_1344588	Lypla1	NCBI_Gene:18777,ENSEMBL:ENSMUSG00000025903	MGI:1344588	protein coding gene	lysophospholipase 1
1	gene	4.807892	4.886770	positive	MGI_C57BL6J_5611216	Gm37988	ENSEMBL:ENSMUSG00000104217	MGI:5611216	protein coding gene	predicted gene, 37988
1	gene	4.857694	4.897909	positive	MGI_C57BL6J_1196624	Tcea1	NCBI_Gene:21399,ENSEMBL:ENSMUSG00000033813	MGI:1196624	protein coding gene	transcription elongation factor A (SII) 1
1	pseudogene	4.879202	4.880747	negative	MGI_C57BL6J_3648587	Gm6104	NCBI_Gene:619829,ENSEMBL:ENSMUSG00000062588	MGI:3648587	pseudogene	predicted gene 6104
1	gene	4.905751	4.906861	negative	MGI_C57BL6J_5610505	Gm37277	ENSEMBL:ENSMUSG00000103280	MGI:5610505	unclassified gene	predicted gene, 37277
1	gene	4.909573	5.070308	negative	MGI_C57BL6J_1929866	Rgs20	NCBI_Gene:58175,ENSEMBL:ENSMUSG00000002459	MGI:1929866	protein coding gene	regulator of G-protein signaling 20
1	pseudogene	4.927028	4.927299	negative	MGI_C57BL6J_4937927	Gm17100	ENSEMBL:ENSMUSG00000091305	MGI:4937927	pseudogene	predicted gene 17100
1	gene	4.938576	4.940710	negative	MGI_C57BL6J_5610307	Gm37079	ENSEMBL:ENSMUSG00000102653	MGI:5610307	unclassified gene	predicted gene, 37079
1	gene	4.968430	4.977005	positive	MGI_C57BL6J_3801909	Gm16041	NCBI_Gene:102631647,ENSEMBL:ENSMUSG00000085623	MGI:3801909	lncRNA gene	predicted gene 16041
1	pseudogene	5.063060	5.064658	positive	MGI_C57BL6J_4937928	Gm17101	NCBI_Gene:100417473,ENSEMBL:ENSMUSG00000091665	MGI:4937928	pseudogene	predicted gene 17101
1	gene	5.070018	5.163213	positive	MGI_C57BL6J_1914864	Atp6v1h	NCBI_Gene:108664,ENSEMBL:ENSMUSG00000033793	MGI:1914864	protein coding gene	ATPase, H+ transporting, lysosomal V1 subunit H
1	gene	5.156597	5.158506	positive	MGI_C57BL6J_2443922	B230334L07Rik	NA	NA	unclassified gene	RIKEN cDNA B230334L07 gene
1	pseudogene	5.276106	5.277337	negative	MGI_C57BL6J_3644877	Gm7182	NCBI_Gene:636659,ENSEMBL:ENSMUSG00000104352	MGI:3644877	pseudogene	predicted gene 7182
1	gene	5.307739	5.310017	positive	MGI_C57BL6J_5610795	Gm37567	ENSEMBL:ENSMUSG00000104046	MGI:5610795	unclassified gene	predicted gene, 37567
1	pseudogene	5.319710	5.320327	negative	MGI_C57BL6J_5011255	Gm19070	NCBI_Gene:100418201	MGI:5011255	pseudogene	predicted gene, 19070
1	gene	5.403547	5.405578	positive	MGI_C57BL6J_5611492	Gm38264	ENSEMBL:ENSMUSG00000102907	MGI:5611492	unclassified gene	predicted gene, 38264
1	gene	5.588450	5.606134	positive	MGI_C57BL6J_97439	Oprk1	NCBI_Gene:18387,ENSEMBL:ENSMUSG00000025905	MGI:97439	protein coding gene	opioid receptor, kappa 1
1	pseudogene	5.617837	5.618230	negative	MGI_C57BL6J_5610193	Gm36965	ENSEMBL:ENSMUSG00000103936	MGI:5610193	pseudogene	predicted gene, 36965
1	gene	5.644645	5.644745	negative	MGI_C57BL6J_5452240	Gm22463	ENSEMBL:ENSMUSG00000093015	MGI:5452240	miRNA gene	predicted gene, 22463
1	gene	5.842874	5.844672	negative	MGI_C57BL6J_5610657	Gm37429	ENSEMBL:ENSMUSG00000103519	MGI:5610657	unclassified gene	predicted gene, 37429
1	gene	5.913707	5.917398	negative	MGI_C57BL6J_891989	Npbwr1	NCBI_Gene:226304,ENSEMBL:ENSMUSG00000033774	MGI:891989	protein coding gene	neuropeptides B/W receptor 1
1	pseudogene	6.048963	6.050045	negative	MGI_C57BL6J_5011399	Gm19214	NCBI_Gene:100418441,ENSEMBL:ENSMUSG00000103090	MGI:5011399	pseudogene	predicted gene, 19214
1	gene	6.164706	6.167315	negative	MGI_C57BL6J_5825843	Gm46206	NCBI_Gene:108167788	MGI:5825843	lncRNA gene	predicted gene, 46206
1	gene	6.206197	6.276648	positive	MGI_C57BL6J_1341850	Rb1cc1	NCBI_Gene:12421,ENSEMBL:ENSMUSG00000025907	MGI:1341850	protein coding gene	RB1-inducible coiled-coil 1
1	gene	6.209863	6.216612	negative	MGI_C57BL6J_3604103	4732440D04Rik	NCBI_Gene:654788,ENSEMBL:ENSMUSG00000090031	MGI:3604103	lncRNA gene	RIKEN cDNA 4732440D04 gene
1	gene	6.359218	6.394731	positive	MGI_C57BL6J_3645495	Alkal1	NCBI_Gene:620393,ENSEMBL:ENSMUSG00000087247	MGI:3645495	protein coding gene	ALK and LTK ligand 1
1	gene	6.377512	6.382119	negative	MGI_C57BL6J_5825720	Gm46083	NCBI_Gene:108167611	MGI:5825720	lncRNA gene	predicted gene, 46083
1	pseudogene	6.380274	6.382392	positive	MGI_C57BL6J_3780316	Gm2147	NCBI_Gene:100039302,ENSEMBL:ENSMUSG00000103355	MGI:3780316	pseudogene	predicted gene 2147
1	pseudogene	6.382229	6.383180	negative	MGI_C57BL6J_3647903	Gm7417	NCBI_Gene:102631893,ENSEMBL:ENSMUSG00000102706	MGI:3647903	pseudogene	predicted gene 7417
1	pseudogene	6.429655	6.441296	negative	MGI_C57BL6J_5011211	Gm19026	NCBI_Gene:100418138,ENSEMBL:ENSMUSG00000103845	MGI:5011211	pseudogene	predicted gene, 19026
1	gene	6.487231	6.860940	positive	MGI_C57BL6J_2446700	St18	NCBI_Gene:240690,ENSEMBL:ENSMUSG00000033740	MGI:2446700	protein coding gene	suppression of tumorigenicity 18
1	gene	6.861237	6.864151	negative	MGI_C57BL6J_5662629	Gm42492	ENSEMBL:ENSMUSG00000103329	MGI:5662629	unclassified gene	predicted gene 42492
1	pseudogene	6.910464	6.911239	positive	MGI_C57BL6J_3647895	Gm7449	NCBI_Gene:665015,ENSEMBL:ENSMUSG00000104385	MGI:3647895	pseudogene	predicted gene 7449
1	pseudogene	6.916526	6.923642	positive	MGI_C57BL6J_5610336	Gm37108	NCBI_Gene:102641523,ENSEMBL:ENSMUSG00000102135	MGI:5610336	pseudogene	predicted gene, 37108
1	pseudogene	6.929759	6.929788	positive	MGI_C57BL6J_5610503	Gm37275	ENSEMBL:ENSMUSG00000103282	MGI:5610503	pseudogene	predicted gene, 37275
1	pseudogene	6.998217	6.998541	positive	MGI_C57BL6J_5610453	Gm37225	ENSEMBL:ENSMUSG00000102534	MGI:5610453	pseudogene	predicted gene, 37225
1	pseudogene	7.013762	7.013920	positive	MGI_C57BL6J_5610717	Gm37489	ENSEMBL:ENSMUSG00000102213	MGI:5610717	pseudogene	predicted gene, 37489
1	pseudogene	7.035881	7.037223	positive	MGI_C57BL6J_3645764	Gm5694	NCBI_Gene:435608,ENSEMBL:ENSMUSG00000103629	MGI:3645764	pseudogene	predicted gene 5694
1	gene	7.088892	7.173628	positive	MGI_C57BL6J_2441773	Pcmtd1	NCBI_Gene:319263,ENSEMBL:ENSMUSG00000051285	MGI:2441773	protein coding gene	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
1	pseudogene	7.136195	7.137827	negative	MGI_C57BL6J_5504098	Gm26983	NCBI_Gene:108167612,ENSEMBL:ENSMUSG00000098201	MGI:5504098	pseudogene	predicted gene, 26983
1	gene	7.148110	7.152137	positive	MGI_C57BL6J_5611600	Gm38372	ENSEMBL:ENSMUSG00000103509	MGI:5611600	unclassified gene	predicted gene, 38372
1	pseudogene	7.177675	7.179753	positive	MGI_C57BL6J_3642725	Gm9826	NCBI_Gene:545302,ENSEMBL:ENSMUSG00000048538	MGI:3642725	pseudogene	predicted gene 9826
1	pseudogene	7.188158	7.190142	negative	MGI_C57BL6J_97378	Nras-ps2	NCBI_Gene:18178,ENSEMBL:ENSMUSG00000103709	MGI:97378	pseudogene	neuroblastoma ras oncogene, pseudogene 2
1	gene	7.265803	7.265932	positive	MGI_C57BL6J_5453051	Gm23274	ENSEMBL:ENSMUSG00000077244	MGI:5453051	snoRNA gene	predicted gene, 23274
1	gene	7.314638	7.398666	negative	MGI_C57BL6J_5477395	Gm26901	NCBI_Gene:102632124,ENSEMBL:ENSMUSG00000097797	MGI:5477395	lncRNA gene	predicted gene, 26901
1	pseudogene	7.315451	7.316462	positive	MGI_C57BL6J_5011187	Gm19002	NCBI_Gene:100418102,ENSEMBL:ENSMUSG00000102768	MGI:5011187	pseudogene	predicted gene, 19002
1	pseudogene	7.410679	7.411996	positive	MGI_C57BL6J_5011169	Gm18984	NCBI_Gene:100418076,ENSEMBL:ENSMUSG00000103498	MGI:5011169	pseudogene	predicted gene, 18984
1	gene	7.497968	7.518149	positive	MGI_C57BL6J_5589573	Gm30414	ENSEMBL:ENSMUSG00000103067	MGI:5589573	lncRNA gene	predicted gene, 30414
1	pseudogene	7.591646	7.591931	positive	MGI_C57BL6J_5611019	Gm37791	ENSEMBL:ENSMUSG00000102320	MGI:5611019	pseudogene	predicted gene, 37791
1	pseudogene	7.597370	7.599482	positive	MGI_C57BL6J_3645544	Gm7470	NCBI_Gene:665063,ENSEMBL:ENSMUSG00000104226	MGI:3645544	pseudogene	predicted gene 7470
1	pseudogene	7.664051	7.665000	positive	MGI_C57BL6J_3645546	Rps2-ps2	NCBI_Gene:665069,ENSEMBL:ENSMUSG00000103903	MGI:3645546	pseudogene	ribosomal protein S2, pseudogene 2
1	pseudogene	7.728861	7.730565	negative	MGI_C57BL6J_5611444	Gm38216	ENSEMBL:ENSMUSG00000103557	MGI:5611444	pseudogene	predicted gene, 38216
1	pseudogene	7.767622	7.768739	negative	MGI_C57BL6J_5010088	Gm17903	NCBI_Gene:100416072	MGI:5010088	pseudogene	predicted gene, 17903
1	gene	8.108629	8.122449	negative	MGI_C57BL6J_5622474	Gm39589	NCBI_Gene:105243858	MGI:5622474	lncRNA gene	predicted gene, 39589
1	gene	8.359739	9.301066	negative	MGI_C57BL6J_1918346	Sntg1	NCBI_Gene:71096,ENSEMBL:ENSMUSG00000025909	MGI:1918346	protein coding gene	syntrophin, gamma 1
1	gene	8.450960	8.453491	negative	MGI_C57BL6J_5611252	Gm38024	ENSEMBL:ENSMUSG00000102647	MGI:5611252	unclassified gene	predicted gene, 38024
1	pseudogene	8.468426	8.468825	negative	MGI_C57BL6J_3826541	Gm16284	ENSEMBL:ENSMUSG00000086235	MGI:3826541	pseudogene	predicted gene 16284
1	gene	8.527780	8.531313	negative	MGI_C57BL6J_5611487	Gm38259	ENSEMBL:ENSMUSG00000102253	MGI:5611487	unclassified gene	predicted gene, 38259
1	gene	8.588615	8.588724	negative	MGI_C57BL6J_5453135	Gm23358	ENSEMBL:ENSMUSG00000093970	MGI:5453135	miRNA gene	predicted gene, 23358
1	gene	8.643696	8.644859	negative	MGI_C57BL6J_5610233	Gm37005	ENSEMBL:ENSMUSG00000103884	MGI:5610233	unclassified gene	predicted gene, 37005
1	pseudogene	8.791661	8.792229	negative	MGI_C57BL6J_3768636	Gm15452	NCBI_Gene:100039474,ENSEMBL:ENSMUSG00000084353	MGI:3768636	pseudogene	predicted gene 15452
1	pseudogene	8.815842	8.816039	positive	MGI_C57BL6J_5610192	Gm36964	ENSEMBL:ENSMUSG00000103933	MGI:5610192	pseudogene	predicted gene, 36964
1	gene	8.816138	8.816247	positive	MGI_C57BL6J_5454053	Gm24276	ENSEMBL:ENSMUSG00000076135	MGI:5454053	miRNA gene	predicted gene, 24276
1	pseudogene	8.855112	8.856334	negative	MGI_C57BL6J_3648859	Gm6152	NCBI_Gene:102632599,ENSEMBL:ENSMUSG00000086195	MGI:3648859	pseudogene	predicted gene 6152
1	pseudogene	8.856558	8.857402	positive	MGI_C57BL6J_3644942	Gm7445	NCBI_Gene:102632504,ENSEMBL:ENSMUSG00000104504	MGI:3644942	pseudogene	predicted gene 7445
1	pseudogene	8.962622	8.963865	negative	MGI_C57BL6J_3643471	Gm7493	NCBI_Gene:102632382,ENSEMBL:ENSMUSG00000066693	MGI:3643471	pseudogene	predicted gene 7493
1	gene	9.191067	9.192116	negative	MGI_C57BL6J_5610857	Gm37629	ENSEMBL:ENSMUSG00000102316	MGI:5610857	unclassified gene	predicted gene, 37629
1	pseudogene	9.258617	9.259134	negative	MGI_C57BL6J_5611236	Gm38008	ENSEMBL:ENSMUSG00000103819	MGI:5611236	pseudogene	predicted gene, 38008
1	gene	9.286922	9.290180	positive	MGI_C57BL6J_5610371	Gm37143	ENSEMBL:ENSMUSG00000102871	MGI:5610371	unclassified gene	predicted gene, 37143
1	pseudogene	9.396668	9.398687	negative	MGI_C57BL6J_3648954	Gm6187	NCBI_Gene:620853,ENSEMBL:ENSMUSG00000101571	MGI:3648954	pseudogene	predicted gene 6187
1	gene	9.437054	9.438070	positive	MGI_C57BL6J_5589878	Gm30719	NCBI_Gene:102632723	MGI:5589878	lncRNA gene	predicted gene, 30719
1	pseudogene	9.439741	9.440432	negative	MGI_C57BL6J_5010484	Gm18299	NCBI_Gene:100416881,ENSEMBL:ENSMUSG00000104428	MGI:5010484	pseudogene	predicted gene, 18299
1	pseudogene	9.450508	9.452040	positive	MGI_C57BL6J_3646401	Gm7512	NCBI_Gene:665138,ENSEMBL:ENSMUSG00000102272	MGI:3646401	pseudogene	predicted gene 7512
1	gene	9.458670	9.458772	positive	MGI_C57BL6J_5454542	Gm24765	ENSEMBL:ENSMUSG00000065625	MGI:5454542	snRNA gene	predicted gene, 24765
1	pseudogene	9.499338	9.501522	negative	MGI_C57BL6J_5010485	Gm18300	NCBI_Gene:100416882,ENSEMBL:ENSMUSG00000103411	MGI:5010485	pseudogene	predicted gene, 18300
1	gene	9.545408	9.547455	positive	MGI_C57BL6J_1929721	Rrs1	NCBI_Gene:59014,ENSEMBL:ENSMUSG00000061024	MGI:1929721	protein coding gene	ribosome biogenesis regulator 1
1	gene	9.547935	9.580673	positive	MGI_C57BL6J_1923437	Adhfe1	NCBI_Gene:76187,ENSEMBL:ENSMUSG00000025911	MGI:1923437	protein coding gene	alcohol dehydrogenase, iron containing, 1
1	gene	9.560832	9.631175	negative	MGI_C57BL6J_1919731	2610203C22Rik	NCBI_Gene:72481,ENSEMBL:ENSMUSG00000079671	MGI:1919731	lncRNA gene	RIKEN cDNA 2610203C22 gene
1	pseudogene	9.574536	9.575865	positive	MGI_C57BL6J_3644104	Gm6161	NCBI_Gene:620542,ENSEMBL:ENSMUSG00000081441	MGI:3644104	pseudogene	predicted gene 6161
1	gene	9.601199	9.627143	positive	MGI_C57BL6J_1924232	Vxn	NCBI_Gene:76982,ENSEMBL:ENSMUSG00000067879	MGI:1924232	protein coding gene	vexin
1	gene	9.639255	9.640582	negative	MGI_C57BL6J_5580226	Gm29520	ENSEMBL:ENSMUSG00000099827	MGI:5580226	lncRNA gene	predicted gene 29520
1	gene	9.667407	9.700439	negative	MGI_C57BL6J_99925	Mybl1	NCBI_Gene:17864,ENSEMBL:ENSMUSG00000025912	MGI:99925	protein coding gene	myeloblastosis oncogene-like 1
1	gene	9.718622	9.748382	negative	MGI_C57BL6J_1917925	Vcpip1	NCBI_Gene:70675,ENSEMBL:ENSMUSG00000045210	MGI:1917925	protein coding gene	valosin containing protein (p97)/p47 complex interacting protein 1
1	gene	9.747648	9.791924	positive	MGI_C57BL6J_1920581	1700034P13Rik	NCBI_Gene:73331,ENSEMBL:ENSMUSG00000097893	MGI:1920581	lncRNA gene	RIKEN cDNA 1700034P13 gene
1	gene	9.775558	9.791319	positive	MGI_C57BL6J_5622475	Gm39590	NCBI_Gene:105243859	MGI:5622475	lncRNA gene	predicted gene, 39590
1	gene	9.798107	9.902570	positive	MGI_C57BL6J_2182368	Sgk3	NCBI_Gene:170755,ENSEMBL:ENSMUSG00000025915	MGI:2182368	protein coding gene	serum/glucocorticoid regulated kinase 3
1	pseudogene	9.802163	9.802665	negative	MGI_C57BL6J_3647661	Gm6195	NCBI_Gene:108167613,ENSEMBL:ENSMUSG00000046334	MGI:3647661	pseudogene	predicted pseudogene 6195
1	gene	9.834498	9.834602	negative	MGI_C57BL6J_5452384	Gm22607	ENSEMBL:ENSMUSG00000088916	MGI:5452384	snRNA gene	predicted gene, 22607
1	pseudogene	9.901944	9.902558	positive	MGI_C57BL6J_3829209	Gm2352	NCBI_Gene:100039643	MGI:3829209	pseudogene	predicted gene 2352
1	gene	9.906157	9.942166	positive	MGI_C57BL6J_3045334	Mcmdc2	NCBI_Gene:240697,ENSEMBL:ENSMUSG00000046101	MGI:3045334	protein coding gene	minichromosome maintenance domain containing 2
1	gene	9.941959	9.944118	negative	MGI_C57BL6J_1921074	Snhg6	NCBI_Gene:73824,ENSEMBL:ENSMUSG00000098234	MGI:1921074	lncRNA gene	small nucleolar RNA host gene 6
1	gene	9.942463	9.942549	negative	MGI_C57BL6J_2387894	Snord87	NCBI_Gene:266793,ENSEMBL:ENSMUSG00000093178	MGI:2387894	snoRNA gene	small nucleolar RNA, C/D box 87
1	gene	9.960163	9.968207	negative	MGI_C57BL6J_3780500	Tcf24	NCBI_Gene:100039596,ENSEMBL:ENSMUSG00000099032	MGI:3780500	protein coding gene	transcription factor 24
1	gene	9.967314	9.968687	positive	MGI_C57BL6J_3649088	E330040D14Rik	ENSEMBL:ENSMUSG00000104025	MGI:3649088	unclassified gene	RIKEN cDNA E330040D14 gene
1	gene	9.968622	10.013541	negative	MGI_C57BL6J_1921138	Ppp1r42	NCBI_Gene:69312,ENSEMBL:ENSMUSG00000025916	MGI:1921138	protein coding gene	protein phosphatase 1, regulatory subunit 42
1	gene	9.982387	9.992366	positive	MGI_C57BL6J_3801960	Gm15818	ENSEMBL:ENSMUSG00000087199	MGI:3801960	lncRNA gene	predicted gene 15818
1	gene	10.009814	10.009917	negative	MGI_C57BL6J_5454451	Gm24674	ENSEMBL:ENSMUSG00000095780	MGI:5454451	snRNA gene	predicted gene, 24674
1	gene	10.024600	10.038168	negative	MGI_C57BL6J_1349415	Cops5	NCBI_Gene:26754,ENSEMBL:ENSMUSG00000025917	MGI:1349415	protein coding gene	COP9 signalosome subunit 5
1	gene	10.037987	10.136771	positive	MGI_C57BL6J_2681832	Cspp1	NCBI_Gene:211660,ENSEMBL:ENSMUSG00000056763	MGI:2681832	protein coding gene	centrosome and spindle pole associated protein 1
1	gene	10.057025	10.057944	negative	MGI_C57BL6J_1923853	1700047N06Rik	ENSEMBL:ENSMUSG00000102356	MGI:1923853	unclassified gene	RIKEN cDNA 1700047N06 gene
1	gene	10.137507	10.232670	negative	MGI_C57BL6J_2442988	Arfgef1	NCBI_Gene:211673,ENSEMBL:ENSMUSG00000067851	MGI:2442988	protein coding gene	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
1	gene	10.166539	10.166778	positive	MGI_C57BL6J_5456125	Gm26348	ENSEMBL:ENSMUSG00000088153	MGI:5456125	unclassified non-coding RNA gene	predicted gene, 26348
1	gene	10.197081	10.198802	negative	MGI_C57BL6J_5610797	Gm37569	ENSEMBL:ENSMUSG00000102556	MGI:5610797	unclassified gene	predicted gene, 37569
1	gene	10.295791	10.720061	negative	MGI_C57BL6J_3045348	Cpa6	NCBI_Gene:329093,ENSEMBL:ENSMUSG00000042501	MGI:3045348	protein coding gene	carboxypeptidase A6
1	gene	10.449245	10.451989	negative	MGI_C57BL6J_5611233	Gm38005	ENSEMBL:ENSMUSG00000103810	MGI:5611233	unclassified gene	predicted gene, 38005
1	pseudogene	10.554007	10.555553	negative	MGI_C57BL6J_3783051	Gm15604	NCBI_Gene:100416202,ENSEMBL:ENSMUSG00000083422	MGI:3783051	pseudogene	predicted gene 15604
1	gene	10.555554	10.555660	negative	MGI_C57BL6J_5455030	Gm25253	ENSEMBL:ENSMUSG00000094979	MGI:5455030	snRNA gene	predicted gene, 25253
1	pseudogene	10.694415	10.695614	positive	MGI_C57BL6J_3783050	Gm15603	NCBI_Gene:102636010,ENSEMBL:ENSMUSG00000081417	MGI:3783050	pseudogene	predicted gene 15603
1	gene	10.782456	10.784377	negative	MGI_C57BL6J_5610361	Gm37133	ENSEMBL:ENSMUSG00000103448	MGI:5610361	unclassified gene	predicted gene, 37133
1	pseudogene	10.805281	10.806522	positive	MGI_C57BL6J_3649087	Gm5522	NCBI_Gene:433271,ENSEMBL:ENSMUSG00000100212	MGI:3649087	pseudogene	predicted gene 5522
1	pseudogene	10.868688	10.869446	positive	MGI_C57BL6J_5579365	Gm28659	ENSEMBL:ENSMUSG00000100648	MGI:5579365	pseudogene	predicted gene 28659
1	gene	10.921670	10.921760	positive	MGI_C57BL6J_5452740	Gm22963	ENSEMBL:ENSMUSG00000088585	MGI:5452740	snoRNA gene	predicted gene, 22963
1	gene	10.993272	11.303683	positive	MGI_C57BL6J_1923385	Prex2	NCBI_Gene:109294,ENSEMBL:ENSMUSG00000048960	MGI:1923385	protein coding gene	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
1	gene	11.134111	11.134238	negative	MGI_C57BL6J_5453950	Gm24173	ENSEMBL:ENSMUSG00000077318	MGI:5453950	snoRNA gene	predicted gene, 24173
1	pseudogene	11.223566	11.224174	negative	MGI_C57BL6J_5579392	Gm28686	ENSEMBL:ENSMUSG00000101827	MGI:5579392	pseudogene	predicted gene 28686
1	gene	11.363926	11.366964	negative	MGI_C57BL6J_5610638	Gm37410	ENSEMBL:ENSMUSG00000103494	MGI:5610638	unclassified gene	predicted gene, 37410
1	gene	11.413563	11.975902	positive	MGI_C57BL6J_2444149	A830018L16Rik	NCBI_Gene:320492,ENSEMBL:ENSMUSG00000057715	MGI:2444149	protein coding gene	RIKEN cDNA A830018L16 gene
1	gene	11.416918	11.419388	positive	MGI_C57BL6J_5611406	Gm38178	ENSEMBL:ENSMUSG00000103825	MGI:5611406	unclassified gene	predicted gene, 38178
1	pseudogene	11.608139	11.608400	negative	MGI_C57BL6J_5579979	Gm29273	ENSEMBL:ENSMUSG00000099845	MGI:5579979	pseudogene	predicted gene 29273
1	gene	11.704207	11.706350	positive	MGI_C57BL6J_5611297	Gm38069	ENSEMBL:ENSMUSG00000103561	MGI:5611297	unclassified gene	predicted gene, 38069
1	gene	11.979540	11.991123	positive	MGI_C57BL6J_5590057	Gm30898	NCBI_Gene:102632954	MGI:5590057	lncRNA gene	predicted gene, 30898
1	gene	12.029084	12.061033	negative	MGI_C57BL6J_5590133	Gm30974	NCBI_Gene:102633057	MGI:5590133	lncRNA gene	predicted gene, 30974
1	pseudogene	12.120939	12.122032	positive	MGI_C57BL6J_3648484	Gm7560	NCBI_Gene:665262,ENSEMBL:ENSMUSG00000101610	MGI:3648484	pseudogene	predicted gene 7560
1	gene	12.374936	12.375042	positive	MGI_C57BL6J_5452410	Gm22633	ENSEMBL:ENSMUSG00000093864	MGI:5452410	snRNA gene	predicted gene, 22633
1	gene	12.423687	12.432474	negative	MGI_C57BL6J_5622476	Gm39591	NCBI_Gene:105243860	MGI:5622476	lncRNA gene	predicted gene, 39591
1	gene	12.425986	12.426106	positive	MGI_C57BL6J_5530644	Mir6341	miRBase:MI0021869,NCBI_Gene:102465961,ENSEMBL:ENSMUSG00000098555	MGI:5530644	miRNA gene	microRNA 6341
1	pseudogene	12.565560	12.566590	positive	MGI_C57BL6J_3780551	Gm2383	NCBI_Gene:100039709,ENSEMBL:ENSMUSG00000097628	MGI:3780551	pseudogene	predicted gene 2383
1	pseudogene	12.655843	12.656744	positive	MGI_C57BL6J_3647030	Gm6216	NCBI_Gene:621353,ENSEMBL:ENSMUSG00000098163	MGI:3647030	pseudogene	predicted gene 6216
1	gene	12.667563	12.673090	positive	MGI_C57BL6J_4937278	Gm17644	NCBI_Gene:329096,ENSEMBL:ENSMUSG00000097171	MGI:4937278	lncRNA gene	predicted gene, 17644
1	gene	12.670324	12.671176	negative	MGI_C57BL6J_5580369	Gm29663	ENSEMBL:ENSMUSG00000101314	MGI:5580369	lncRNA gene	predicted gene 29663
1	gene	12.692262	12.861192	positive	MGI_C57BL6J_2138563	Sulf1	NCBI_Gene:240725,ENSEMBL:ENSMUSG00000016918	MGI:2138563	protein coding gene	sulfatase 1
1	gene	12.866549	12.993063	negative	MGI_C57BL6J_2443431	Slco5a1	NCBI_Gene:240726,ENSEMBL:ENSMUSG00000025938	MGI:2443431	protein coding gene	solute carrier organic anion transporter family, member 5A1
1	gene	13.059401	13.059951	negative	MGI_C57BL6J_5610390	Gm37162	ENSEMBL:ENSMUSG00000104518	MGI:5610390	unclassified gene	predicted gene, 37162
1	pseudogene	13.061922	13.062537	positive	MGI_C57BL6J_3647667	Gm5250	NCBI_Gene:383490,ENSEMBL:ENSMUSG00000069620	MGI:3647667	pseudogene	predicted gene 5250
1	gene	13.068838	13.078662	positive	MGI_C57BL6J_5579989	Gm29283	ENSEMBL:ENSMUSG00000099498	MGI:5579989	lncRNA gene	predicted gene 29283
1	gene	13.090688	13.104959	negative	MGI_C57BL6J_5622477	Gm39592	NCBI_Gene:105243861	MGI:5622477	lncRNA gene	predicted gene, 39592
1	gene	13.113428	13.127163	negative	MGI_C57BL6J_3588194	Prdm14	NCBI_Gene:383491,ENSEMBL:ENSMUSG00000042414	MGI:3588194	protein coding gene	PR domain containing 14
1	gene	13.139105	13.374083	negative	MGI_C57BL6J_1276533	Ncoa2	NCBI_Gene:17978,ENSEMBL:ENSMUSG00000005886	MGI:1276533	protein coding gene	nuclear receptor coactivator 2
1	gene	13.145301	13.146630	negative	MGI_C57BL6J_1917334	2300004M11Rik	NA	NA	unclassified gene	RIKEN cDNA 2300004M11 gene
1	gene	13.177462	13.179714	negative	MGI_C57BL6J_5611604	Gm38376	ENSEMBL:ENSMUSG00000103506	MGI:5611604	unclassified gene	predicted gene, 38376
1	gene	13.234809	13.236434	negative	MGI_C57BL6J_5610637	Gm37409	ENSEMBL:ENSMUSG00000103495	MGI:5610637	unclassified gene	predicted gene, 37409
1	gene	13.262198	13.262279	positive	MGI_C57BL6J_5531263	Gm27881	ENSEMBL:ENSMUSG00000099183	MGI:5531263	miRNA gene	predicted gene, 27881
1	gene	13.289812	13.290506	negative	MGI_C57BL6J_5611451	Gm38223	ENSEMBL:ENSMUSG00000102639	MGI:5611451	unclassified gene	predicted gene, 38223
1	gene	13.297036	13.298907	negative	MGI_C57BL6J_5610930	Gm37702	ENSEMBL:ENSMUSG00000104170	MGI:5610930	unclassified gene	predicted gene, 37702
1	gene	13.334498	13.334609	negative	MGI_C57BL6J_5452946	Gm23169	ENSEMBL:ENSMUSG00000087782	MGI:5452946	snRNA gene	predicted gene, 23169
1	gene	13.343563	13.348204	negative	MGI_C57BL6J_5611348	Gm38120	ENSEMBL:ENSMUSG00000103085	MGI:5611348	unclassified gene	predicted gene, 38120
1	gene	13.354483	13.356730	negative	MGI_C57BL6J_5611608	Gm38380	ENSEMBL:ENSMUSG00000102664	MGI:5611608	unclassified gene	predicted gene, 38380
1	gene	13.376070	13.388413	positive	MGI_C57BL6J_5580276	Gm29570	ENSEMBL:ENSMUSG00000101476	MGI:5580276	lncRNA gene	predicted gene 29570
1	gene	13.392554	13.422408	negative	MGI_C57BL6J_5622480	Gm39595	NCBI_Gene:105243864	MGI:5622480	lncRNA gene	predicted gene, 39595
1	pseudogene	13.407010	13.407655	negative	MGI_C57BL6J_3647262	Gm7593	NCBI_Gene:665341,ENSEMBL:ENSMUSG00000101171	MGI:3647262	pseudogene	predicted gene 7593
1	pseudogene	13.436514	13.436800	positive	MGI_C57BL6J_5622485	Gm39600	NCBI_Gene:105243872	MGI:5622485	pseudogene	predicted gene, 39600
1	gene	13.564693	13.589910	negative	MGI_C57BL6J_1919515	Tram1	NCBI_Gene:72265,ENSEMBL:ENSMUSG00000025935	MGI:1919515	protein coding gene	translocating chain-associating membrane protein 1
1	gene	13.623330	13.660605	negative	MGI_C57BL6J_2442551	Lactb2	NCBI_Gene:212442,ENSEMBL:ENSMUSG00000025937	MGI:2442551	protein coding gene	lactamase, beta 2
1	gene	13.641483	13.642748	negative	MGI_C57BL6J_5611547	Gm38319	ENSEMBL:ENSMUSG00000102982	MGI:5611547	unclassified gene	predicted gene, 38319
1	gene	13.668738	13.702230	positive	MGI_C57BL6J_2686466	Xkr9	NCBI_Gene:381246,ENSEMBL:ENSMUSG00000067813	MGI:2686466	protein coding gene	X-linked Kx blood group related 9
1	gene	13.774334	13.774464	negative	MGI_C57BL6J_5456050	Gm26273	ENSEMBL:ENSMUSG00000077368	MGI:5456050	snoRNA gene	predicted gene, 26273
1	pseudogene	13.774628	13.775938	negative	MGI_C57BL6J_3780619	Gm2452	NCBI_Gene:100039843	MGI:3780619	pseudogene	predicted gene 2452
1	pseudogene	13.785685	13.786929	negative	MGI_C57BL6J_3649089	Gm5523	NCBI_Gene:433273,ENSEMBL:ENSMUSG00000097711	MGI:3649089	pseudogene	predicted pseudogene 5523
1	gene	13.846500	13.881933	positive	MGI_C57BL6J_5590354	Gm31195	NCBI_Gene:102633349	MGI:5590354	lncRNA gene	predicted gene, 31195
1	gene	13.846871	13.849119	negative	MGI_C57BL6J_5610175	Gm36947	ENSEMBL:ENSMUSG00000102166	MGI:5610175	unclassified gene	predicted gene, 36947
1	pseudogene	13.916903	13.917754	positive	MGI_C57BL6J_5011307	Gm19122	NCBI_Gene:100418294	MGI:5011307	pseudogene	predicted gene, 19122
1	gene	13.932378	13.932685	positive	MGI_C57BL6J_5455268	Gm25491	ENSEMBL:ENSMUSG00000089358	MGI:5455268	unclassified non-coding RNA gene	predicted gene, 25491
1	gene	14.042254	14.141388	positive	MGI_C57BL6J_5622481	Gm39596	NCBI_Gene:105243865	MGI:5622481	lncRNA gene	predicted gene, 39596
1	gene	14.109215	14.112819	negative	MGI_C57BL6J_5610628	Gm37400	ENSEMBL:ENSMUSG00000104209	MGI:5610628	unclassified gene	predicted gene, 37400
1	gene	14.168953	14.310267	negative	MGI_C57BL6J_109344	Eya1	NCBI_Gene:14048,ENSEMBL:ENSMUSG00000025932	MGI:109344	protein coding gene	EYA transcriptional coactivator and phosphatase 1
1	gene	14.182578	14.182677	positive	MGI_C57BL6J_5452393	Gm22616	ENSEMBL:ENSMUSG00000095853	MGI:5452393	miRNA gene	predicted gene, 22616
1	gene	14.255552	14.255990	negative	MGI_C57BL6J_5610672	Gm37444	ENSEMBL:ENSMUSG00000102588	MGI:5610672	unclassified gene	predicted gene, 37444
1	pseudogene	14.550433	14.551087	positive	MGI_C57BL6J_3644738	Gm7617	NCBI_Gene:665391	MGI:3644738	pseudogene	predicted gene 7617
1	gene	14.752937	14.780974	positive	MGI_C57BL6J_3642739	Gm9947	NCBI_Gene:105243866,ENSEMBL:ENSMUSG00000054493	MGI:3642739	lncRNA gene	predicted gene 9947
1	gene	14.753344	14.756089	negative	MGI_C57BL6J_1333884	Msc	NCBI_Gene:17681,ENSEMBL:ENSMUSG00000025930	MGI:1333884	protein coding gene	musculin
1	gene	14.788645	14.792965	positive	MGI_C57BL6J_5610640	Gm37412	ENSEMBL:ENSMUSG00000103492	MGI:5610640	unclassified gene	predicted gene, 37412
1	pseudogene	14.839267	14.840273	negative	MGI_C57BL6J_2149598	Smt3h2-ps4	NCBI_Gene:114607,ENSEMBL:ENSMUSG00000081201	MGI:2149598	pseudogene	SMT3 suppressor of mif two 3 homolog 2, pseudogene 4 (S. cerevisiae)
1	pseudogene	14.865018	14.866019	positive	MGI_C57BL6J_3647110	Rpl5-ps1	NCBI_Gene:665407,ENSEMBL:ENSMUSG00000082193	MGI:3647110	pseudogene	ribosomal protein L5, pseudogene 1
1	pseudogene	14.869758	14.870038	positive	MGI_C57BL6J_5592659	Gm33500	NCBI_Gene:102636435	MGI:5592659	pseudogene	predicted gene, 33500
1	gene	14.872648	14.919014	negative	MGI_C57BL6J_3522699	Trpa1	NCBI_Gene:277328,ENSEMBL:ENSMUSG00000032769	MGI:3522699	protein coding gene	transient receptor potential cation channel, subfamily A, member 1
1	gene	15.019040	15.019159	negative	MGI_C57BL6J_5456122	Gm26345	ENSEMBL:ENSMUSG00000088159	MGI:5456122	snoRNA gene	predicted gene, 26345
1	pseudogene	15.067032	15.067558	positive	MGI_C57BL6J_3642999	Gm5048	NCBI_Gene:269105	MGI:3642999	pseudogene	predicted gene 5048
1	pseudogene	15.201959	15.205406	positive	MGI_C57BL6J_5012102	Gm19917	NCBI_Gene:100503835	MGI:5012102	pseudogene	predicted gene, 19917
1	pseudogene	15.268604	15.269815	negative	MGI_C57BL6J_3642220	Gm10566	NCBI_Gene:100039959,ENSEMBL:ENSMUSG00000073737	MGI:3642220	pseudogene	predicted gene 10566
1	gene	15.287157	15.723751	positive	MGI_C57BL6J_99632	Kcnb2	NCBI_Gene:98741,ENSEMBL:ENSMUSG00000092083	MGI:99632	protein coding gene	potassium voltage gated channel, Shab-related subfamily, member 2
1	gene	15.364302	15.365834	positive	MGI_C57BL6J_5611344	Gm38116	ENSEMBL:ENSMUSG00000102937	MGI:5611344	unclassified gene	predicted gene, 38116
1	gene	15.556249	15.558337	positive	MGI_C57BL6J_5610366	Gm37138	ENSEMBL:ENSMUSG00000104149	MGI:5610366	unclassified gene	predicted gene, 37138
1	gene	15.570583	15.571242	positive	MGI_C57BL6J_1924619	9430087D07Rik	NA	NA	unclassified gene	RIKEN cDNA 9430087D07 gene
1	gene	15.685935	15.686046	negative	MGI_C57BL6J_5455004	Gm25227	ENSEMBL:ENSMUSG00000088829	MGI:5455004	snoRNA gene	predicted gene, 25227
1	gene	15.757832	15.757963	positive	MGI_C57BL6J_5454945	Gm25168	ENSEMBL:ENSMUSG00000077377	MGI:5454945	snoRNA gene	predicted gene, 25168
1	pseudogene	15.759930	15.760680	negative	MGI_C57BL6J_3648622	Gm6060	NCBI_Gene:606528,ENSEMBL:ENSMUSG00000101652	MGI:3648622	pseudogene	predicted gene 6060
1	pseudogene	15.760761	15.760860	positive	MGI_C57BL6J_5579375	Gm28669	ENSEMBL:ENSMUSG00000100814	MGI:5579375	pseudogene	predicted gene 28669
1	gene	15.804982	15.844052	positive	MGI_C57BL6J_109634	Terf1	NCBI_Gene:21749,ENSEMBL:ENSMUSG00000025925	MGI:109634	protein coding gene	telomeric repeat binding factor 1
1	gene	15.853331	15.856499	positive	MGI_C57BL6J_5610737	Gm37509	ENSEMBL:ENSMUSG00000104379	MGI:5610737	unclassified gene	predicted gene, 37509
1	gene	15.853862	15.892722	negative	MGI_C57BL6J_2684952	Sbspon	NCBI_Gene:226866,ENSEMBL:ENSMUSG00000032719	MGI:2684952	protein coding gene	somatomedin B and thrombospondin, type 1 domain containing
1	gene	15.879530	15.879832	positive	MGI_C57BL6J_5453036	Gm23259	ENSEMBL:ENSMUSG00000088943	MGI:5453036	unclassified non-coding RNA gene	predicted gene, 23259
1	gene	15.905205	15.907764	positive	MGI_C57BL6J_5590682	Gm31523	NCBI_Gene:102633776	MGI:5590682	lncRNA gene	predicted gene, 31523
1	pseudogene	16.053335	16.053906	positive	MGI_C57BL6J_3644198	Gm7634	NCBI_Gene:665434,ENSEMBL:ENSMUSG00000100652	MGI:3644198	pseudogene	predicted gene 7634
1	gene	16.065974	16.093344	negative	MGI_C57BL6J_1923049	4930444P10Rik	NCBI_Gene:75799,ENSEMBL:ENSMUSG00000067795	MGI:1923049	protein coding gene	RIKEN cDNA 4930444P10 gene
1	gene	16.101295	16.104662	negative	MGI_C57BL6J_98073	Rpl7	NCBI_Gene:19989,ENSEMBL:ENSMUSG00000043716	MGI:98073	protein coding gene	ribosomal protein L7
1	gene	16.105774	16.133734	positive	MGI_C57BL6J_1924238	Rdh10	NCBI_Gene:98711,ENSEMBL:ENSMUSG00000025921	MGI:1924238	protein coding gene	retinol dehydrogenase 10 (all-trans)
1	gene	16.208197	16.210517	negative	MGI_C57BL6J_5611477	Gm38249	ENSEMBL:ENSMUSG00000104165	MGI:5611477	unclassified gene	predicted gene, 38249
1	gene	16.228506	16.244062	positive	MGI_C57BL6J_5578801	Gm28095	ENSEMBL:ENSMUSG00000100868	MGI:5578801	lncRNA gene	predicted gene 28095
1	gene	16.228674	16.520182	negative	MGI_C57BL6J_1352508	Stau2	NCBI_Gene:29819,ENSEMBL:ENSMUSG00000025920	MGI:1352508	protein coding gene	staufen double-stranded RNA binding protein 2
1	gene	16.253587	16.267921	positive	MGI_C57BL6J_3649156	Gm7568	NCBI_Gene:102634042,ENSEMBL:ENSMUSG00000089982	MGI:3649156	lncRNA gene	predicted gene 7568
1	gene	16.309438	16.311723	negative	MGI_C57BL6J_3028048	C130013N14Rik	NA	NA	unclassified gene	RIKEN cDNA C130013N14 gene
1	gene	16.540788	16.619489	negative	MGI_C57BL6J_1914049	Ube2w	NCBI_Gene:66799,ENSEMBL:ENSMUSG00000025939	MGI:1914049	protein coding gene	ubiquitin-conjugating enzyme E2W (putative)
1	gene	16.591021	16.596309	negative	MGI_C57BL6J_5825721	Gm46084	NCBI_Gene:108167614	MGI:5825721	protein coding gene	predicted gene, 46084
1	gene	16.604594	16.604936	negative	MGI_C57BL6J_1925631	2310047N11Rik	NA	NA	unclassified gene	RIKEN cDNA 2310047N11 gene
1	gene	16.618560	16.621539	positive	MGI_C57BL6J_5611570	Gm38342	ENSEMBL:ENSMUSG00000102457	MGI:5611570	unclassified gene	predicted gene, 38342
1	gene	16.641725	16.657119	negative	MGI_C57BL6J_1915173	Eloc	NCBI_Gene:67923,ENSEMBL:ENSMUSG00000079658	MGI:1915173	protein coding gene	elongin C
1	gene	16.657552	16.662278	positive	MGI_C57BL6J_4437728	D030040B21Rik	NCBI_Gene:329101,ENSEMBL:ENSMUSG00000097744	MGI:4437728	lncRNA gene	RIKEN cDNA D030040B21 gene
1	pseudogene	16.662385	16.663714	negative	MGI_C57BL6J_3648037	Gm7654	NCBI_Gene:665480,ENSEMBL:ENSMUSG00000100959	MGI:3648037	pseudogene	predicted gene 7654
1	gene	16.665191	16.678275	positive	MGI_C57BL6J_1915068	Tmem70	NCBI_Gene:70397,ENSEMBL:ENSMUSG00000025940	MGI:1915068	protein coding gene	transmembrane protein 70
1	gene	16.688051	16.709611	positive	MGI_C57BL6J_1341909	Ly96	NCBI_Gene:17087,ENSEMBL:ENSMUSG00000025779	MGI:1341909	protein coding gene	lymphocyte antigen 96
1	pseudogene	16.758205	16.758623	negative	MGI_C57BL6J_5580355	Gm29649	ENSEMBL:ENSMUSG00000100093	MGI:5580355	pseudogene	predicted gene 29649
1	pseudogene	16.768279	16.770138	negative	MGI_C57BL6J_3644176	Gm5828	NCBI_Gene:545306,ENSEMBL:ENSMUSG00000091020	MGI:3644176	pseudogene	predicted gene 5828
1	gene	16.898185	17.091631	positive	MGI_C57BL6J_5579082	Gm28376	ENSEMBL:ENSMUSG00000101640	MGI:5579082	lncRNA gene	predicted gene 28376
1	gene	16.930970	16.931796	positive	MGI_C57BL6J_1918145	4921511E07Rik	ENSEMBL:ENSMUSG00000104133	MGI:1918145	unclassified gene	RIKEN cDNA 4921511E07 gene
1	gene	16.942104	17.097904	negative	MGI_C57BL6J_1891495	Jph1	NCBI_Gene:57339,ENSEMBL:ENSMUSG00000042686	MGI:1891495	protein coding gene	junctophilin 1
1	gene	17.097969	17.100793	positive	MGI_C57BL6J_5825722	Gm46085	NCBI_Gene:108167615	MGI:5825722	lncRNA gene	predicted gene, 46085
1	gene	17.098573	17.124568	negative	MGI_C57BL6J_5591141	Gm31982	NCBI_Gene:102634387	MGI:5591141	lncRNA gene	predicted gene, 31982
1	gene	17.120597	17.128971	positive	MGI_C57BL6J_5579489	Gm28783	NCBI_Gene:102634310,ENSEMBL:ENSMUSG00000100110	MGI:5579489	lncRNA gene	predicted gene 28783
1	gene	17.145362	17.164271	positive	MGI_C57BL6J_1338002	Gdap1	NCBI_Gene:14545,ENSEMBL:ENSMUSG00000025777	MGI:1338002	protein coding gene	ganglioside-induced differentiation-associated-protein 1
1	gene	17.168402	17.173109	positive	MGI_C57BL6J_5579490	Gm28784	NCBI_Gene:102634541,ENSEMBL:ENSMUSG00000099899	MGI:5579490	lncRNA gene	predicted gene 28784
1	gene	17.202970	17.205577	positive	MGI_C57BL6J_5622482	Gm39597	NCBI_Gene:105243867	MGI:5622482	lncRNA gene	predicted gene, 39597
1	pseudogene	17.250114	17.250492	negative	MGI_C57BL6J_5579491	Gm28785	ENSEMBL:ENSMUSG00000100272	MGI:5579491	pseudogene	predicted gene 28785
1	pseudogene	17.394460	17.395525	positive	MGI_C57BL6J_3647666	Gm5251	NCBI_Gene:383495,ENSEMBL:ENSMUSG00000100398	MGI:3647666	pseudogene	predicted gene 5251
1	pseudogene	17.397290	17.401340	negative	MGI_C57BL6J_1889580	Rbm6-ps1	NCBI_Gene:108212,ENSEMBL:ENSMUSG00000101589	MGI:1889580	pseudogene	RNA binding motif protein 6, pseudogene 1
1	pseudogene	17.428841	17.429569	negative	MGI_C57BL6J_3648507	Gm6075	NCBI_Gene:606716,ENSEMBL:ENSMUSG00000102048	MGI:3648507	pseudogene	predicted gene 6075
1	gene	17.520001	17.520111	positive	MGI_C57BL6J_5454943	Gm25166	ENSEMBL:ENSMUSG00000089534	MGI:5454943	snoRNA gene	predicted gene, 25166
1	gene	17.601901	17.630939	positive	MGI_C57BL6J_1934659	Pi15	NCBI_Gene:94227,ENSEMBL:ENSMUSG00000067780	MGI:1934659	protein coding gene	peptidase inhibitor 15
1	gene	17.615084	17.641382	negative	MGI_C57BL6J_5578860	Gm28154	NCBI_Gene:102634738,ENSEMBL:ENSMUSG00000100053	MGI:5578860	lncRNA gene	predicted gene 28154
1	gene	17.676027	17.727646	negative	MGI_C57BL6J_3801761	Gm16070	NCBI_Gene:102634913,ENSEMBL:ENSMUSG00000085125	MGI:3801761	lncRNA gene	predicted gene 16070
1	gene	17.727029	17.767235	positive	MGI_C57BL6J_1934666	Crispld1	NCBI_Gene:83691,ENSEMBL:ENSMUSG00000025776	MGI:1934666	protein coding gene	cysteine-rich secretory protein LCCL domain containing 1
1	gene	17.741915	17.944776	negative	MGI_C57BL6J_5578859	Gm28153	NCBI_Gene:105243868,ENSEMBL:ENSMUSG00000099895	MGI:5578859	lncRNA gene	predicted gene 28153
1	pseudogene	17.947002	17.949647	positive	MGI_C57BL6J_3648169	Gm7690	NCBI_Gene:665564,ENSEMBL:ENSMUSG00000100554	MGI:3648169	pseudogene	predicted gene 7690
1	pseudogene	17.992961	17.999624	negative	MGI_C57BL6J_5010960	Gm18775	NCBI_Gene:100417711,ENSEMBL:ENSMUSG00000099473	MGI:5010960	pseudogene	predicted gene, 18775
1	pseudogene	17.993813	17.997483	positive	MGI_C57BL6J_5010154	Gm17969	NCBI_Gene:100416210,ENSEMBL:ENSMUSG00000099591	MGI:5010154	pseudogene	predicted gene, 17969
1	gene	17.994462	18.059056	negative	MGI_C57BL6J_5579462	Gm28756	ENSEMBL:ENSMUSG00000109887	MGI:5579462	lncRNA gene	predicted gene 28756
1	pseudogene	18.005961	18.016186	negative	MGI_C57BL6J_5579461	Gm28755	ENSEMBL:ENSMUSG00000102001	MGI:5579461	pseudogene	predicted gene 28755
1	pseudogene	18.048100	18.058269	negative	MGI_C57BL6J_5804899	Gm45784	ENSEMBL:ENSMUSG00000101717	MGI:5804899	pseudogene	predicted gene 45784
1	gene	18.114884	18.145966	negative	MGI_C57BL6J_1925331	Crisp4	NCBI_Gene:78081,ENSEMBL:ENSMUSG00000025774	MGI:1925331	protein coding gene	cysteine-rich secretory protein 4
1	pseudogene	18.210053	18.223564	negative	MGI_C57BL6J_3646526	Defb44-ps	NCBI_Gene:654454,ENSEMBL:ENSMUSG00000070977	MGI:3646526	pseudogene	defensin beta 44, pseudogene
1	gene	18.236473	18.237443	negative	MGI_C57BL6J_3648148	Defb18	NCBI_Gene:654460,ENSEMBL:ENSMUSG00000073735	MGI:3648148	protein coding gene	defensin beta 18
1	gene	18.250978	18.265138	negative	MGI_C57BL6J_1924923	Defb41	NCBI_Gene:77673,ENSEMBL:ENSMUSG00000067773	MGI:1924923	protein coding gene	defensin beta 41
1	pseudogene	18.262395	18.263379	negative	MGI_C57BL6J_5010022	Gm17837	NCBI_Gene:100415956,ENSEMBL:ENSMUSG00000101685	MGI:5010022	pseudogene	predicted gene, 17837
1	pseudogene	18.708428	18.709338	positive	MGI_C57BL6J_3647664	Gm5252	NCBI_Gene:383499,ENSEMBL:ENSMUSG00000101306	MGI:3647664	pseudogene	predicted gene 5252
1	gene	18.969762	18.969833	negative	MGI_C57BL6J_5453852	Gm24075	ENSEMBL:ENSMUSG00000088800	MGI:5453852	snoRNA gene	predicted gene, 24075
1	pseudogene	19.037266	19.037505	positive	MGI_C57BL6J_5579049	Gm28343	NCBI_Gene:108167808,ENSEMBL:ENSMUSG00000101644	MGI:5579049	pseudogene	predicted gene 28343
1	pseudogene	19.062857	19.063135	positive	MGI_C57BL6J_5579050	Gm28344	ENSEMBL:ENSMUSG00000099433	MGI:5579050	pseudogene	predicted gene 28344
1	gene	19.063300	19.104840	negative	MGI_C57BL6J_3801887	Gm15825	NCBI_Gene:102635013,ENSEMBL:ENSMUSG00000089787	MGI:3801887	lncRNA gene	predicted gene 15825
1	gene	19.103022	19.168592	positive	MGI_C57BL6J_2153466	Tfap2d	NCBI_Gene:226896,ENSEMBL:ENSMUSG00000042596	MGI:2153466	protein coding gene	transcription factor AP-2, delta
1	pseudogene	19.153422	19.153966	negative	MGI_C57BL6J_3710521	Gm10075	ENSEMBL:ENSMUSG00000100720	MGI:3710521	pseudogene	predicted gene 10075
1	gene	19.208914	19.238845	positive	MGI_C57BL6J_104672	Tfap2b	NCBI_Gene:21419,ENSEMBL:ENSMUSG00000025927	MGI:104672	protein coding gene	transcription factor AP-2 beta
1	gene	19.242725	19.243769	positive	MGI_C57BL6J_5579046	Gm28340	ENSEMBL:ENSMUSG00000100538	MGI:5579046	lncRNA gene	predicted gene 28340
1	pseudogene	19.320181	19.320719	negative	MGI_C57BL6J_5579047	Gm28341	NCBI_Gene:108167596,ENSEMBL:ENSMUSG00000101117	MGI:5579047	pseudogene	predicted gene 28341
1	pseudogene	19.330939	19.333675	positive	MGI_C57BL6J_3645366	Gm4849	NCBI_Gene:226901,ENSEMBL:ENSMUSG00000100204	MGI:3645366	pseudogene	predicted gene 4849
1	gene	19.513855	19.513919	negative	MGI_C57BL6J_5454410	Gm24633	ENSEMBL:ENSMUSG00000084668	MGI:5454410	snoRNA gene	predicted gene, 24633
1	gene	19.606089	19.636734	positive	MGI_C57BL6J_5591810	Gm32651	NCBI_Gene:102635266	MGI:5591810	lncRNA gene	predicted gene, 32651
1	gene	19.614269	19.616767	positive	MGI_C57BL6J_5611610	Gm38382	ENSEMBL:ENSMUSG00000102597	MGI:5611610	unclassified gene	predicted gene, 38382
1	gene	20.057779	20.618082	negative	MGI_C57BL6J_2155808	Pkhd1	NCBI_Gene:241035,ENSEMBL:ENSMUSG00000043760	MGI:2155808	protein coding gene	polycystic kidney and hepatic disease 1
1	gene	20.062070	20.065548	negative	MGI_C57BL6J_5610543	Gm37315	ENSEMBL:ENSMUSG00000104095	MGI:5610543	unclassified gene	predicted gene, 37315
1	gene	20.356452	20.392300	positive	MGI_C57BL6J_1922278	4930486I03Rik	NCBI_Gene:75028,ENSEMBL:ENSMUSG00000089914	MGI:1922278	lncRNA gene	RIKEN cDNA 4930486I03 gene
1	pseudogene	20.444258	20.444810	negative	MGI_C57BL6J_3802035	Gm15795	ENSEMBL:ENSMUSG00000090142	MGI:3802035	pseudogene	predicted gene 15795
1	gene	20.444811	20.444912	negative	MGI_C57BL6J_5453939	Gm24162	ENSEMBL:ENSMUSG00000070175	MGI:5453939	snRNA gene	predicted gene, 24162
1	gene	20.669882	20.682958	positive	MGI_C57BL6J_5818206	Lincmd1	NCBI_Gene:105661730	MGI:5818206	lncRNA gene	long intergenic non-protein coding RNA of muscle differentiation 1
1	gene	20.669882	20.684298	positive	MGI_C57BL6J_5579359	Gm28653	ENSEMBL:ENSMUSG00000099906	MGI:5579359	lncRNA gene	predicted gene 28653
1	gene	20.679010	20.679082	positive	MGI_C57BL6J_2676881	Mir206	miRBase:MI0000249,NCBI_Gene:387202,ENSEMBL:ENSMUSG00000065559	MGI:2676881	miRNA gene	microRNA 206
1	gene	20.682769	20.682887	positive	MGI_C57BL6J_3618720	Mir133b	miRBase:MI0000821,NCBI_Gene:723817,ENSEMBL:ENSMUSG00000065480	MGI:3618720	miRNA gene	microRNA 133b
1	gene	20.714277	20.714743	positive	MGI_C57BL6J_1920847	1700113H21Rik	NA	NA	unclassified gene	RIKEN cDNA 1700113H21 gene
1	gene	20.730905	20.734496	positive	MGI_C57BL6J_107364	Il17a	NCBI_Gene:16171,ENSEMBL:ENSMUSG00000025929	MGI:107364	protein coding gene	interleukin 17A
1	gene	20.777146	20.790617	negative	MGI_C57BL6J_2676631	Il17f	NCBI_Gene:257630,ENSEMBL:ENSMUSG00000041872	MGI:2676631	protein coding gene	interleukin 17F
1	gene	20.802968	20.820312	negative	MGI_C57BL6J_101845	Mcm3	NCBI_Gene:17215,ENSEMBL:ENSMUSG00000041859	MGI:101845	protein coding gene	minichromosome maintenance complex component 3
1	pseudogene	20.821331	20.822516	positive	MGI_C57BL6J_5295693	Gm20587	NCBI_Gene:100417924,ENSEMBL:ENSMUSG00000099714	MGI:5295693	pseudogene	predicted gene, 20587
1	gene	20.836661	20.839689	positive	MGI_C57BL6J_5578771	Gm28065	ENSEMBL:ENSMUSG00000102121	MGI:5578771	lncRNA gene	predicted gene 28065
1	gene	20.842535	20.842666	negative	MGI_C57BL6J_5454500	Gm24723	ENSEMBL:ENSMUSG00000088858	MGI:5454500	snoRNA gene	predicted gene, 24723
1	gene	20.888650	20.890473	negative	MGI_C57BL6J_1924991	6720483E21Rik	NCBI_Gene:77741,ENSEMBL:ENSMUSG00000097934	MGI:1924991	lncRNA gene	RIKEN cDNA 6720483E21 gene
1	gene	20.890606	20.939650	positive	MGI_C57BL6J_1921479	Paqr8	NCBI_Gene:74229,ENSEMBL:ENSMUSG00000025931	MGI:1921479	protein coding gene	progestin and adipoQ receptor family member VIII
1	gene	20.915410	20.915540	negative	MGI_C57BL6J_5453948	Gm24171	ENSEMBL:ENSMUSG00000077314	MGI:5453948	snoRNA gene	predicted gene, 24171
1	pseudogene	20.945711	20.946914	positive	MGI_C57BL6J_5578770	Gm28064	ENSEMBL:ENSMUSG00000100929	MGI:5578770	pseudogene	predicted gene 28064
1	gene	20.951550	20.990841	positive	MGI_C57BL6J_1919127	Efhc1	NCBI_Gene:71877,ENSEMBL:ENSMUSG00000041809	MGI:1919127	protein coding gene	EF-hand domain (C-terminal) containing 1
1	gene	20.996299	21.079229	negative	MGI_C57BL6J_1924817	Tram2	NCBI_Gene:170829,ENSEMBL:ENSMUSG00000041779	MGI:1924817	protein coding gene	translocating chain-associating membrane protein 2
1	gene	21.080114	21.081748	positive	MGI_C57BL6J_5578993	Gm28287	ENSEMBL:ENSMUSG00000099971	MGI:5578993	lncRNA gene	predicted gene 28287
1	gene	21.166436	21.230167	positive	MGI_C57BL6J_1922962	Tmem14a	NCBI_Gene:75712,ENSEMBL:ENSMUSG00000025933	MGI:1922962	protein coding gene	transmembrane protein 14A
1	pseudogene	21.178988	21.187427	positive	MGI_C57BL6J_3780862	Gm2693	ENSEMBL:ENSMUSG00000100819	MGI:3780862	pseudogene	predicted gene 2693
1	gene	21.189046	21.195335	negative	MGI_C57BL6J_5592106	Gm32947	NCBI_Gene:102635667	MGI:5592106	lncRNA gene	predicted gene, 32947
1	gene	21.207234	21.271685	negative	MGI_C57BL6J_5579542	Gm28836	NCBI_Gene:102635593,ENSEMBL:ENSMUSG00000099343	MGI:5579542	lncRNA gene	predicted gene 28836
1	gene	21.234722	21.236821	positive	MGI_C57BL6J_5611452	Gm38224	ENSEMBL:ENSMUSG00000102633	MGI:5611452	unclassified gene	predicted gene, 38224
1	gene	21.240585	21.265661	positive	MGI_C57BL6J_95856	Gsta3	NCBI_Gene:14859,ENSEMBL:ENSMUSG00000025934	MGI:95856	protein coding gene	glutathione S-transferase, alpha 3
1	pseudogene	21.271799	21.273127	positive	MGI_C57BL6J_3648114	Gm7094	NCBI_Gene:101056100,ENSEMBL:ENSMUSG00000096375	MGI:3648114	pseudogene	predicted pseudogene 7094
1	pseudogene	21.285246	21.298312	negative	MGI_C57BL6J_3647976	Gm4956	NCBI_Gene:241041,ENSEMBL:ENSMUSG00000025936	MGI:3647976	pseudogene	predicted gene 4956
1	pseudogene	21.312516	21.341388	negative	MGI_C57BL6J_5434073	Gm21909	NCBI_Gene:101056161,ENSEMBL:ENSMUSG00000093963	MGI:5434073	pseudogene	predicted gene, 21909
1	gene	21.349641	21.352200	positive	MGI_C57BL6J_2676610	Khdc1a	NCBI_Gene:368204,ENSEMBL:ENSMUSG00000067750	MGI:2676610	protein coding gene	KH domain containing 1A
1	pseudogene	21.354005	21.355116	positive	MGI_C57BL6J_3840126	Gm16329	ENSEMBL:ENSMUSG00000086194	MGI:3840126	pseudogene	predicted gene 16329
1	pseudogene	21.364803	21.365030	positive	MGI_C57BL6J_3840125	Gm16327	ENSEMBL:ENSMUSG00000094436	MGI:3840125	pseudogene	predicted gene 16327
1	gene	21.368331	21.370845	positive	MGI_C57BL6J_3583007	Khdc1c	NCBI_Gene:433278,ENSEMBL:ENSMUSG00000041722	MGI:3583007	protein coding gene	KH domain containing 1C
1	gene	21.369788	21.381308	negative	MGI_C57BL6J_5592306	Gm33147	NCBI_Gene:102635938	MGI:5592306	lncRNA gene	predicted gene, 33147
1	pseudogene	21.372356	21.374170	positive	MGI_C57BL6J_3780878	Gm2709	NCBI_Gene:100040319,ENSEMBL:ENSMUSG00000085507	MGI:3780878	pseudogene	predicted gene 2709
1	pseudogene	21.379554	21.380419	positive	MGI_C57BL6J_4410373	Gm16533	NCBI_Gene:100379214,ENSEMBL:ENSMUSG00000094926	MGI:4410373	pseudogene	predited gene 16533
1	gene	21.383556	21.386384	positive	MGI_C57BL6J_2138477	Khdc1b	NCBI_Gene:98582,ENSEMBL:ENSMUSG00000085079	MGI:2138477	protein coding gene	KH domain containing 1B
1	pseudogene	21.390906	21.391101	positive	MGI_C57BL6J_3840127	Gm16328	ENSEMBL:ENSMUSG00000085679	MGI:3840127	pseudogene	predicted gene 16328
1	gene	21.398399	21.962650	negative	MGI_C57BL6J_1924937	Kcnq5	NCBI_Gene:226922,ENSEMBL:ENSMUSG00000028033	MGI:1924937	protein coding gene	potassium voltage-gated channel, subfamily Q, member 5
1	gene	21.454691	21.457017	negative	MGI_C57BL6J_5610177	Gm36949	ENSEMBL:ENSMUSG00000104138	MGI:5610177	unclassified gene	predicted gene, 36949
1	pseudogene	21.511867	21.513096	negative	MGI_C57BL6J_3648029	Gm7658	NCBI_Gene:665489,ENSEMBL:ENSMUSG00000082935	MGI:3648029	pseudogene	predicted gene 7658
1	gene	21.804147	21.806024	negative	MGI_C57BL6J_2442969	A630064C07Rik	NA	NA	unclassified gene	RIKEN cDNA A630064C07 gene
1	gene	21.838948	21.840514	negative	MGI_C57BL6J_5611471	Gm38243	ENSEMBL:ENSMUSG00000103748	MGI:5611471	unclassified gene	predicted gene, 38243
1	gene	21.952103	21.953458	negative	MGI_C57BL6J_1923344	5830474E16Rik	NA	NA	unclassified gene	RIKEN cDNA 5830474E16 gene
1	gene	21.959842	21.962530	positive	MGI_C57BL6J_5477074	Gm26580	ENSEMBL:ENSMUSG00000097109	MGI:5477074	lncRNA gene	predicted gene, 26580
1	pseudogene	22.030053	22.030615	negative	MGI_C57BL6J_3647717	Gm5696	NCBI_Gene:435612,ENSEMBL:ENSMUSG00000099692	MGI:3647717	pseudogene	predicted gene 5696
1	pseudogene	22.237849	22.238295	positive	MGI_C57BL6J_5578945	Gm28239	ENSEMBL:ENSMUSG00000100418	MGI:5578945	pseudogene	predicted gene 28239
1	gene	22.286251	22.805994	negative	MGI_C57BL6J_2152971	Rims1	NCBI_Gene:116837,ENSEMBL:ENSMUSG00000041670	MGI:2152971	protein coding gene	regulating synaptic membrane exocytosis 1
1	pseudogene	22.740764	22.741565	positive	MGI_C57BL6J_5477360	Gm26866	ENSEMBL:ENSMUSG00000097642	MGI:5477360	pseudogene	predicted gene, 26866
1	gene	22.898387	22.905081	positive	MGI_C57BL6J_3646486	Gm7759	NCBI_Gene:665725	MGI:3646486	unclassified gene	predicted gene 7759
1	pseudogene	22.984817	22.987125	negative	MGI_C57BL6J_3643583	Gm7761	NCBI_Gene:665731,ENSEMBL:ENSMUSG00000101468	MGI:3643583	pseudogene	predicted gene 7761
1	gene	23.048295	23.235673	negative	MGI_C57BL6J_5580212	Gm29506	NCBI_Gene:102632273,ENSEMBL:ENSMUSG00000101227	MGI:5580212	lncRNA gene	predicted gene 29506
1	gene	23.100473	23.102253	negative	MGI_C57BL6J_1914005	Ppp1r14bl	NCBI_Gene:66755,ENSEMBL:ENSMUSG00000073730	MGI:1914005	protein coding gene	protein phosphatase 1, regulatory inhibitor subunit 14B like
1	gene	23.123989	23.127725	positive	MGI_C57BL6J_5589601	Gm30442	NCBI_Gene:102632345	MGI:5589601	lncRNA gene	predicted gene, 30442
1	gene	23.245211	23.245331	positive	MGI_C57BL6J_5453953	Gm24176	ENSEMBL:ENSMUSG00000089553	MGI:5453953	snoRNA gene	predicted gene, 24176
1	gene	23.255685	23.256407	negative	MGI_C57BL6J_3644588	Gm6420	ENSEMBL:ENSMUSG00000102766	MGI:3644588	protein coding gene	predicted gene 6420
1	gene	23.272269	23.272339	positive	MGI_C57BL6J_2676907	Mir30a	miRBase:MI0000144,NCBI_Gene:387225,ENSEMBL:ENSMUSG00000065405	MGI:2676907	miRNA gene	microRNA 30a
1	gene	23.291537	23.291935	positive	MGI_C57BL6J_5504143	Gm27028	ENSEMBL:ENSMUSG00000097970	MGI:5504143	lncRNA gene	predicted gene, 27028
1	gene	23.291701	23.291784	positive	MGI_C57BL6J_3619048	Mir30c-2	miRBase:MI0000548,NCBI_Gene:723964,ENSEMBL:ENSMUSG00000065567	MGI:3619048	miRNA gene	microRNA 30c-2
1	gene	23.293729	23.294075	positive	MGI_C57BL6J_5579813	Gm29107	ENSEMBL:ENSMUSG00000100775	MGI:5579813	lncRNA gene	predicted gene 29107
1	pseudogene	23.345956	23.346599	negative	MGI_C57BL6J_5434309	Gm20954	NCBI_Gene:100418001,ENSEMBL:ENSMUSG00000101226	MGI:5434309	pseudogene	predicted gene, 20954
1	gene	23.366424	23.397772	negative	MGI_C57BL6J_1917405	Ogfrl1	NCBI_Gene:70155,ENSEMBL:ENSMUSG00000026158	MGI:1917405	protein coding gene	opioid growth factor receptor-like 1

R version 3.6.2 (2019-12-12)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Catalina 10.15.7

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] abind_1.4-5       qtl2_0.22         reshape2_1.4.4    ggplot2_3.3.5    
 [5] tibble_3.1.2      psych_2.0.7       readxl_1.3.1      cluster_2.1.0    
 [9] dplyr_0.8.5       optparse_1.6.6    rhdf5_2.28.1      mclust_5.4.6     
[13] tidyr_1.0.2       data.table_1.14.0 knitr_1.33        kableExtra_1.1.0 
[17] workflowr_1.6.2  

loaded via a namespace (and not attached):
 [1] httr_1.4.1        bit64_4.0.5       viridisLite_0.4.0 assertthat_0.2.1 
 [5] highr_0.9         blob_1.2.1        cellranger_1.1.0  yaml_2.2.1       
 [9] pillar_1.6.1      RSQLite_2.2.7     backports_1.2.1   lattice_0.20-38  
[13] glue_1.4.2        digest_0.6.27     promises_1.1.0    rvest_0.3.5      
[17] colorspace_2.0-2  htmltools_0.5.1.1 httpuv_1.5.2      plyr_1.8.6       
[21] pkgconfig_2.0.3   purrr_0.3.4       scales_1.1.1      webshot_0.5.2    
[25] getopt_1.20.3     later_1.0.0       git2r_0.26.1      ellipsis_0.3.2   
[29] cachem_1.0.5      withr_2.4.2       mnormt_1.5-7      magrittr_2.0.1   
[33] crayon_1.4.1      memoise_2.0.0     evaluate_0.14     fs_1.4.1         
[37] fansi_0.5.0       nlme_3.1-142      xml2_1.3.1        tools_3.6.2      
[41] hms_0.5.3         lifecycle_1.0.0   stringr_1.4.0     Rhdf5lib_1.6.3   
[45] munsell_0.5.0     compiler_3.6.2    rlang_0.4.11      grid_3.6.2       
[49] rstudioapi_0.13   rmarkdown_2.1     gtable_0.3.0      DBI_1.1.1        
[53] R6_2.5.0          fastmap_1.1.0     bit_4.0.4         utf8_1.2.1       
[57] rprojroot_1.3-2   readr_1.3.1       stringi_1.7.2     parallel_3.6.2   
[61] Rcpp_1.0.7        vctrs_0.3.8       tidyselect_1.0.0  xfun_0.24

QTL Analysis - rz transformed age of onset (rz.age) [ICI vs EOI] (corrected phenotype, disproportionate markers removed)

Belinda Cornes

2022-02-25

Loading Data

Genome-wide scan

No additive covariates

Additive covariates

Interactive term