Function reference

Image Groups Manger

Class to manage image groups used for segmentation and fine tune models.

LayerChannel
LayersGroup
ImageGroup
ImageGroupRoot
ImageGroupEditor
MaskGenerator
ImageGroupsManager
ImageGroupsManager.set_active_item
ImageGroupsManager.get_active_item
ImageGroupsManager.focus_active_item
ImageGroupsManager.update_group
ImageGroupsManager.create_group
ImageGroupsManager.create_layers_group
ImageGroupsManager.add_layers_to_group
ImageGroupsManager.remove_layer
ImageGroupsManager.remove_layers_group
ImageGroupsManager.remove_group
ImageGroupsManager.save_layers_group
ImageGroupsManager.dump_dataset_specs

Acquisition Function Configuration

Class to handle model inference on image managed by the Image Groups Manager widget.

AcquisitionFunction
compute_BALD
compute_acquisition_superpixel
compute_acquisition_fun
compute_segmentation
add_multiscale_output_layer
DropoutEvalOverrider
add_dropout
SegmentationMethod
SegmentationMethod._run_pred
SegmentationMethod._run_eval
SegmentationMethod.probs
SegmentationMethod.segment
TunableMethod
TunableMethod._get_transform
TunableMethod._fine_tune
TunableMethod.fine_tune
AcquisitionFunction
AcquisitionFunction.compute_acquisition
AcquisitionFunction.compute_acquisition_layers
AcquisitionFunction.fine_tune

Label Groups Manger

Class to manage segmentation label groups resulted from executing segmentation with the Acquisition Function Configuration widget.

LabelItem
LabelGroup
LabelGroupRoot
LabelsManager
LabelsManager.add_labels
LabelsManager.remove_labels
LabelsManager.remove_labels_group
LabelsManager.navigate
LabelsManager.focus_region
LabelsManager.focus_and_edit_region
LabelsManager.edit_labels
LabelsManager.commit