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Set up

isopret-gui is a desktop Java application. You can download precompiled executable JAR files from the Releases page.. of the GitHub site. Later, we will generate stand-alone Windows and Mac native apps. This is currently the recommended way of using isopret-gui.

Unfortunately, currently isopretGO does not support old (intel) MacIntosh hardware.

Additionally, the following text describes how to build isopret-gui from source.

Prerequisites

isopret-gui was written with Java version 17. If you want to build isopret-gui from source, then the build process described below requires Git. and maven.. (version 3.5.3 or higher).

Installation

Go the GitHub page of isopretGO., and clone the project. Build the executable from source with maven, and then test the build.

git clone https://github.com/TheJacksonLaboratory/isopret.git
cd isopret
mvn package
java -jar target/isopret.jar
  Usage: isopret [-hV] [COMMAND]
    Isoform interpretation tool.
    -h, --help      Show this help message and exit.
    -V, --version   Print version information and exit.
  Commands:
    download, D  Download files for prositometry
    hbadeals, H  Analyze HBA-DEALS files
    svg, V       Create SVG/PDF files for a specific gene
    stats, S     Show descriptive statistics about data