Package org.monarchinitiative.lirical.cli.cmd

Class DownloadCommand

java.lang.Object

org.monarchinitiative.lirical.cli.cmd.DownloadCommand

All Implemented Interfaces:

Callable<Integer>

public class DownloadCommand
extends Object

Download a number of files needed for the analysis. We download by default to a subdirectory called data, which is created if necessary. We download the files hp.obo, phenotype.hpoa, Homo_sapiencs_gene_info.gz, and mim2gene_medgen.

Author:

Peter Robinson

Field Summary

Fields

Modifier and Type	Field	Description
Path	datadir
boolean	overwrite
boolean[]	verbosity

Constructor Summary

Constructors

Constructor	Description
DownloadCommand()

Method Summary

Modifier and Type	Method	Description
Integer	call()
Integer	execute()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

datadir

public Path datadir

overwrite

public boolean overwrite

verbosity

public boolean[] verbosity

Constructor Details

DownloadCommand

public DownloadCommand()

Method Details

execute

public Integer execute()

call

public Integer call()

Specified by:

call in interface Callable<Integer>