-
Terminally Deprecated ElementsElementDescriptionthe method has been deprecated and will be removed in
v3.0.0. UseGenotypeLrMatchType.ONE_P_OR_LP_CLINVAR_ALLELE_IN_ADinstead.the method has been deprecated and will be removed inv3.0.0. UseGenotypeLrMatchType.TWO_P_OR_LP_CLINVAR_ALLELES_IN_ARinstead.the field will be removed inv3.0.0.the method has been deprecated and will be removed inv3.0.0. UseGenotypeLrWithExplanation.of(GeneIdentifier, GenotypeLrMatchType, double, String)instead.the function has been deprecated without replacement and will be removed inv3.0.0.Since Exomiser14.0.0, the pathogenicity scores, allele frequencies data and clinvar are distributed in separate MV stores. UseExomiserMvStoreMetadataServiceFactory.fromResources(Map)instead and provideExomiserResourceswith paths to variant and clinvar database files for eachGenomeBuild. To be removed in 3.0.0.Since Exomiser14.0.0, the pathogenicity scores, allele frequencies data and clinvar are distributed in separate MV stores. UseExomiserMvStoreMetadataServiceFactory.fromResources(Map)instead and provideExomiserResourceswith paths to variant and clinvar database files for eachGenomeBuild. To be removed in 3.0.0.
-
Deprecated MethodsMethodDescriptionorg.monarchinitiative.exomiser.core.proto.AlleleProto.AllelePropertiesOrBuilder.getPropertiesCount()the method has been deprecated and will be removed in
v3.0.0. UseGenotypeLrWithExplanation.of(GeneIdentifier, GenotypeLrMatchType, double, String)instead.the function has been deprecated without replacement and will be removed inv3.0.0.Since Exomiser14.0.0, the pathogenicity scores, allele frequencies data and clinvar are distributed in separate MV stores. UseExomiserMvStoreMetadataServiceFactory.fromResources(Map)instead and provideExomiserResourceswith paths to variant and clinvar database files for eachGenomeBuild. To be removed in 3.0.0.
-
Deprecated ConstructorsConstructorDescriptionSince Exomiser
14.0.0, the pathogenicity scores, allele frequencies data and clinvar are distributed in separate MV stores. UseExomiserMvStoreMetadataServiceFactory.fromResources(Map)instead and provideExomiserResourceswith paths to variant and clinvar database files for eachGenomeBuild. To be removed in 3.0.0.
-
Deprecated Enum ConstantsEnum ConstantDescriptionthe method has been deprecated and will be removed in
v3.0.0. UseGenotypeLrMatchType.ONE_P_OR_LP_CLINVAR_ALLELE_IN_ADinstead.the method has been deprecated and will be removed inv3.0.0. UseGenotypeLrMatchType.TWO_P_OR_LP_CLINVAR_ALLELES_IN_ARinstead.the field will be removed inv3.0.0.
LiricalBuilder.exomiserResources(GenomeBuild, ExomiserResources)instead