Package org.monarchinitiative.exomiser.core.proto

Class AlleleProto.AlleleProperties

java.lang.Object

com.google.protobuf.AbstractMessageLite

com.google.protobuf.AbstractMessage

com.google.protobuf.GeneratedMessageV3

org.monarchinitiative.exomiser.core.proto.AlleleProto.AlleleProperties

All Implemented Interfaces:

com.google.protobuf.Message, com.google.protobuf.MessageLite, com.google.protobuf.MessageLiteOrBuilder, com.google.protobuf.MessageOrBuilder, Serializable, AlleleProto.AllelePropertiesOrBuilder

Enclosing class:

AlleleProto

public static final class AlleleProto.AlleleProperties
extends com.google.protobuf.GeneratedMessageV3
implements AlleleProto.AllelePropertiesOrBuilder

Protobuf type AlleleProperties

See Also:

• Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static final class	AlleleProto.AlleleProperties.Builder	Protobuf type AlleleProperties

Nested classes/interfaces inherited from class com.google.protobuf.GeneratedMessageV3

com.google.protobuf.GeneratedMessageV3.BuilderParent, com.google.protobuf.GeneratedMessageV3.ExtendableBuilder<MessageType extends com.google.protobuf.GeneratedMessageV3.ExtendableMessage,BuilderType extends com.google.protobuf.GeneratedMessageV3.ExtendableBuilder<MessageType,BuilderType>>, com.google.protobuf.GeneratedMessageV3.ExtendableMessage<MessageType extends com.google.protobuf.GeneratedMessageV3.ExtendableMessage>, com.google.protobuf.GeneratedMessageV3.ExtendableMessageOrBuilder<MessageType extends com.google.protobuf.GeneratedMessageV3.ExtendableMessage>, com.google.protobuf.GeneratedMessageV3.FieldAccessorTable, com.google.protobuf.GeneratedMessageV3.UnusedPrivateParameter

Nested classes/interfaces inherited from class com.google.protobuf.AbstractMessageLite

com.google.protobuf.AbstractMessageLite.InternalOneOfEnum

Field Summary

Fields

Modifier and Type	Field	Description
static final int	CLINVAR_FIELD_NUMBER
static final int	FREQUENCIES_FIELD_NUMBER
static final int	PATHOGENICITYSCORES_FIELD_NUMBER
static final int	PROPERTIES_FIELD_NUMBER
static final int	RS_ID_FIELD_NUMBER

Fields inherited from class com.google.protobuf.GeneratedMessageV3

alwaysUseFieldBuilders, unknownFields

Fields inherited from class com.google.protobuf.AbstractMessage

memoizedSize

Fields inherited from class com.google.protobuf.AbstractMessageLite

memoizedHashCode

Method Summary

Modifier and Type	Method	Description
boolean	containsProperties(String key)	Deprecated.
boolean	equals(Object obj)
AlleleProto.ClinVar	getClinVar()	.ClinVar clinVar = 3;
AlleleProto.ClinVarOrBuilder	getClinVarOrBuilder()	.ClinVar clinVar = 3;
static AlleleProto.AlleleProperties	getDefaultInstance()
AlleleProto.AlleleProperties	getDefaultInstanceForType()
static final com.google.protobuf.Descriptors.Descriptor	getDescriptor()
AlleleProto.Frequency	getFrequencies(int index)	repeated .Frequency frequencies = 4;
int	getFrequenciesCount()	repeated .Frequency frequencies = 4;
List<AlleleProto.Frequency>	getFrequenciesList()	repeated .Frequency frequencies = 4;
AlleleProto.FrequencyOrBuilder	getFrequenciesOrBuilder(int index)	repeated .Frequency frequencies = 4;
List<? extends AlleleProto.FrequencyOrBuilder>	getFrequenciesOrBuilderList()	repeated .Frequency frequencies = 4;
com.google.protobuf.Parser<AlleleProto.AlleleProperties>	getParserForType()
AlleleProto.PathogenicityScore	getPathogenicityScores(int index)	repeated .PathogenicityScore pathogenicityScores = 5;
int	getPathogenicityScoresCount()	repeated .PathogenicityScore pathogenicityScores = 5;
List<AlleleProto.PathogenicityScore>	getPathogenicityScoresList()	repeated .PathogenicityScore pathogenicityScores = 5;
AlleleProto.PathogenicityScoreOrBuilder	getPathogenicityScoresOrBuilder(int index)	repeated .PathogenicityScore pathogenicityScores = 5;
List<? extends AlleleProto.PathogenicityScoreOrBuilder>	getPathogenicityScoresOrBuilderList()	repeated .PathogenicityScore pathogenicityScores = 5;
Map<String,Float>	getProperties()	Deprecated.
int	getPropertiesCount()	Deprecated.
Map<String,Float>	getPropertiesMap()	Deprecated.
float	getPropertiesOrDefault(String key, float defaultValue)	Deprecated.
float	getPropertiesOrThrow(String key)	Deprecated.
String	getRsId()	string rs_id = 1;
com.google.protobuf.ByteString	getRsIdBytes()	string rs_id = 1;
int	getSerializedSize()
final com.google.protobuf.UnknownFieldSet	getUnknownFields()
boolean	hasClinVar()	.ClinVar clinVar = 3;
int	hashCode()
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable	internalGetFieldAccessorTable()
protected com.google.protobuf.MapField	internalGetMapField(int number)
final boolean	isInitialized()
static AlleleProto.AlleleProperties.Builder	newBuilder()
static AlleleProto.AlleleProperties.Builder	newBuilder(AlleleProto.AlleleProperties prototype)
AlleleProto.AlleleProperties.Builder	newBuilderForType()
protected AlleleProto.AlleleProperties.Builder	newBuilderForType(com.google.protobuf.GeneratedMessageV3.BuilderParent parent)
protected Object	newInstance(com.google.protobuf.GeneratedMessageV3.UnusedPrivateParameter unused)
static AlleleProto.AlleleProperties	parseDelimitedFrom(InputStream input)
static AlleleProto.AlleleProperties	parseDelimitedFrom(InputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static AlleleProto.AlleleProperties	parseFrom(byte[] data)
static AlleleProto.AlleleProperties	parseFrom(byte[] data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static AlleleProto.AlleleProperties	parseFrom(com.google.protobuf.ByteString data)
static AlleleProto.AlleleProperties	parseFrom(com.google.protobuf.ByteString data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static AlleleProto.AlleleProperties	parseFrom(com.google.protobuf.CodedInputStream input)
static AlleleProto.AlleleProperties	parseFrom(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static AlleleProto.AlleleProperties	parseFrom(InputStream input)
static AlleleProto.AlleleProperties	parseFrom(InputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static AlleleProto.AlleleProperties	parseFrom(ByteBuffer data)
static AlleleProto.AlleleProperties	parseFrom(ByteBuffer data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static com.google.protobuf.Parser<AlleleProto.AlleleProperties>	parser()
AlleleProto.AlleleProperties.Builder	toBuilder()
void	writeTo(com.google.protobuf.CodedOutputStream output)

Methods inherited from class com.google.protobuf.GeneratedMessageV3

canUseUnsafe, computeStringSize, computeStringSizeNoTag, emptyBooleanList, emptyDoubleList, emptyFloatList, emptyIntList, emptyLongList, getAllFields, getDescriptorForType, getField, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, hasField, hasOneof, makeExtensionsImmutable, mergeFromAndMakeImmutableInternal, mutableCopy, mutableCopy, mutableCopy, mutableCopy, mutableCopy, newBooleanList, newBuilderForType, newDoubleList, newFloatList, newIntList, newLongList, parseDelimitedWithIOException, parseDelimitedWithIOException, parseUnknownField, parseUnknownFieldProto3, parseWithIOException, parseWithIOException, parseWithIOException, parseWithIOException, serializeBooleanMapTo, serializeIntegerMapTo, serializeLongMapTo, serializeStringMapTo, writeReplace, writeString, writeStringNoTag

Methods inherited from class com.google.protobuf.AbstractMessage

findInitializationErrors, getInitializationErrorString, hashBoolean, hashEnum, hashEnumList, hashFields, hashLong, toString

Methods inherited from class com.google.protobuf.AbstractMessageLite

addAll, addAll, checkByteStringIsUtf8, toByteArray, toByteString, writeDelimitedTo, writeTo

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.google.protobuf.MessageLite

toByteArray, toByteString, writeDelimitedTo, writeTo

Methods inherited from interface com.google.protobuf.MessageOrBuilder

findInitializationErrors, getAllFields, getDescriptorForType, getField, getInitializationErrorString, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, hasField, hasOneof

Field Details

RS_ID_FIELD_NUMBER

public static final int RS_ID_FIELD_NUMBER

See Also:

• Constant Field Values

PROPERTIES_FIELD_NUMBER

public static final int PROPERTIES_FIELD_NUMBER

See Also:

• Constant Field Values

CLINVAR_FIELD_NUMBER

public static final int CLINVAR_FIELD_NUMBER

See Also:

• Constant Field Values

FREQUENCIES_FIELD_NUMBER

public static final int FREQUENCIES_FIELD_NUMBER

See Also:

• Constant Field Values

PATHOGENICITYSCORES_FIELD_NUMBER

public static final int PATHOGENICITYSCORES_FIELD_NUMBER

See Also:

• Constant Field Values

Method Details

newInstance

protected Object newInstance(com.google.protobuf.GeneratedMessageV3.UnusedPrivateParameter unused)

Overrides:

newInstance in class com.google.protobuf.GeneratedMessageV3

getUnknownFields

public final com.google.protobuf.UnknownFieldSet getUnknownFields()

Specified by:

getUnknownFields in interface com.google.protobuf.MessageOrBuilder

Overrides:

getUnknownFields in class com.google.protobuf.GeneratedMessageV3

getDescriptor

public static final com.google.protobuf.Descriptors.Descriptor getDescriptor()

internalGetMapField

protected com.google.protobuf.MapField internalGetMapField(int number)

Overrides:

internalGetMapField in class com.google.protobuf.GeneratedMessageV3

internalGetFieldAccessorTable

protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable internalGetFieldAccessorTable()

Specified by:

internalGetFieldAccessorTable in class com.google.protobuf.GeneratedMessageV3

getRsId

public String getRsId()

string rs_id = 1;

Specified by:

getRsId in interface AlleleProto.AllelePropertiesOrBuilder

Returns:

The rsId.

getRsIdBytes

public com.google.protobuf.ByteString getRsIdBytes()

string rs_id = 1;

Specified by:

getRsIdBytes in interface AlleleProto.AllelePropertiesOrBuilder

Returns:

The bytes for rsId.

getPropertiesCount

@Deprecated
public int getPropertiesCount()

Deprecated.

Description copied from interface: AlleleProto.AllelePropertiesOrBuilder

map<string, float> properties = 2 [deprecated = true];

Specified by:

getPropertiesCount in interface AlleleProto.AllelePropertiesOrBuilder

containsProperties

@Deprecated
public boolean containsProperties(String key)

Deprecated.

map<string, float> properties = 2 [deprecated = true];

Specified by:

containsProperties in interface AlleleProto.AllelePropertiesOrBuilder

getProperties

@Deprecated
public Map<String,Float> getProperties()

Deprecated.

Use getPropertiesMap() instead.

Specified by:

getProperties in interface AlleleProto.AllelePropertiesOrBuilder

getPropertiesMap

@Deprecated
public Map<String,Float> getPropertiesMap()

Deprecated.

map<string, float> properties = 2 [deprecated = true];

Specified by:

getPropertiesMap in interface AlleleProto.AllelePropertiesOrBuilder

getPropertiesOrDefault

@Deprecated
public float getPropertiesOrDefault(String key,
 float defaultValue)

Deprecated.

map<string, float> properties = 2 [deprecated = true];

Specified by:

getPropertiesOrDefault in interface AlleleProto.AllelePropertiesOrBuilder

getPropertiesOrThrow

@Deprecated
public float getPropertiesOrThrow(String key)

Deprecated.

map<string, float> properties = 2 [deprecated = true];

Specified by:

getPropertiesOrThrow in interface AlleleProto.AllelePropertiesOrBuilder

hasClinVar

public boolean hasClinVar()

.ClinVar clinVar = 3;

Specified by:

hasClinVar in interface AlleleProto.AllelePropertiesOrBuilder

Returns:

Whether the clinVar field is set.

getClinVar

public AlleleProto.ClinVar getClinVar()

.ClinVar clinVar = 3;

Specified by:

getClinVar in interface AlleleProto.AllelePropertiesOrBuilder

Returns:

The clinVar.

getClinVarOrBuilder

public AlleleProto.ClinVarOrBuilder getClinVarOrBuilder()

.ClinVar clinVar = 3;

Specified by:

getClinVarOrBuilder in interface AlleleProto.AllelePropertiesOrBuilder

getFrequenciesList

public List<AlleleProto.Frequency> getFrequenciesList()

repeated .Frequency frequencies = 4;

Specified by:

getFrequenciesList in interface AlleleProto.AllelePropertiesOrBuilder

getFrequenciesOrBuilderList

public List<? extends AlleleProto.FrequencyOrBuilder> getFrequenciesOrBuilderList()

repeated .Frequency frequencies = 4;

Specified by:

getFrequenciesOrBuilderList in interface AlleleProto.AllelePropertiesOrBuilder

getFrequenciesCount

public int getFrequenciesCount()

repeated .Frequency frequencies = 4;

Specified by:

getFrequenciesCount in interface AlleleProto.AllelePropertiesOrBuilder

getFrequencies

public AlleleProto.Frequency getFrequencies(int index)

repeated .Frequency frequencies = 4;

Specified by:

getFrequencies in interface AlleleProto.AllelePropertiesOrBuilder

getFrequenciesOrBuilder

public AlleleProto.FrequencyOrBuilder getFrequenciesOrBuilder(int index)

repeated .Frequency frequencies = 4;

Specified by:

getFrequenciesOrBuilder in interface AlleleProto.AllelePropertiesOrBuilder

getPathogenicityScoresList

public List<AlleleProto.PathogenicityScore> getPathogenicityScoresList()

repeated .PathogenicityScore pathogenicityScores = 5;

Specified by:

getPathogenicityScoresList in interface AlleleProto.AllelePropertiesOrBuilder

getPathogenicityScoresOrBuilderList

public List<? extends AlleleProto.PathogenicityScoreOrBuilder> getPathogenicityScoresOrBuilderList()

repeated .PathogenicityScore pathogenicityScores = 5;

Specified by:

getPathogenicityScoresOrBuilderList in interface AlleleProto.AllelePropertiesOrBuilder

getPathogenicityScoresCount

public int getPathogenicityScoresCount()

repeated .PathogenicityScore pathogenicityScores = 5;

Specified by:

getPathogenicityScoresCount in interface AlleleProto.AllelePropertiesOrBuilder

getPathogenicityScores

public AlleleProto.PathogenicityScore getPathogenicityScores(int index)

repeated .PathogenicityScore pathogenicityScores = 5;

Specified by:

getPathogenicityScores in interface AlleleProto.AllelePropertiesOrBuilder

getPathogenicityScoresOrBuilder

public AlleleProto.PathogenicityScoreOrBuilder getPathogenicityScoresOrBuilder(int index)

repeated .PathogenicityScore pathogenicityScores = 5;

Specified by:

getPathogenicityScoresOrBuilder in interface AlleleProto.AllelePropertiesOrBuilder

isInitialized

public final boolean isInitialized()

Specified by:

isInitialized in interface com.google.protobuf.MessageLiteOrBuilder

Overrides:

isInitialized in class com.google.protobuf.GeneratedMessageV3

writeTo

public void writeTo(com.google.protobuf.CodedOutputStream output)
             throws IOException

Specified by:

writeTo in interface com.google.protobuf.MessageLite

Overrides:

writeTo in class com.google.protobuf.GeneratedMessageV3

Throws:

IOException

getSerializedSize

public int getSerializedSize()

Specified by:

getSerializedSize in interface com.google.protobuf.MessageLite

Overrides:

getSerializedSize in class com.google.protobuf.GeneratedMessageV3

equals

public boolean equals(Object obj)

Specified by:

equals in interface com.google.protobuf.Message

Overrides:

equals in class com.google.protobuf.AbstractMessage

hashCode

public int hashCode()

Specified by:

hashCode in interface com.google.protobuf.Message

Overrides:

hashCode in class com.google.protobuf.AbstractMessage

parseFrom

public static AlleleProto.AlleleProperties parseFrom(ByteBuffer data)
                                              throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static AlleleProto.AlleleProperties parseFrom(ByteBuffer data,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                              throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static AlleleProto.AlleleProperties parseFrom(com.google.protobuf.ByteString data)
                                              throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static AlleleProto.AlleleProperties parseFrom(com.google.protobuf.ByteString data,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                              throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static AlleleProto.AlleleProperties parseFrom(byte[] data)
                                              throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static AlleleProto.AlleleProperties parseFrom(byte[] data,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                              throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static AlleleProto.AlleleProperties parseFrom(InputStream input)
                                              throws IOException

Throws:

IOException

parseFrom

public static AlleleProto.AlleleProperties parseFrom(InputStream input,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                              throws IOException

Throws:

IOException

parseDelimitedFrom

public static AlleleProto.AlleleProperties parseDelimitedFrom(InputStream input)
                                                       throws IOException

Throws:

IOException

parseDelimitedFrom

public static AlleleProto.AlleleProperties parseDelimitedFrom(InputStream input,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                                       throws IOException

Throws:

IOException

parseFrom

public static AlleleProto.AlleleProperties parseFrom(com.google.protobuf.CodedInputStream input)
                                              throws IOException

Throws:

IOException

parseFrom

public static AlleleProto.AlleleProperties parseFrom(com.google.protobuf.CodedInputStream input,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                              throws IOException

Throws:

IOException

newBuilderForType

public AlleleProto.AlleleProperties.Builder newBuilderForType()

Specified by:

newBuilderForType in interface com.google.protobuf.Message

Specified by:

newBuilderForType in interface com.google.protobuf.MessageLite

newBuilder

public static AlleleProto.AlleleProperties.Builder newBuilder()

newBuilder

public static AlleleProto.AlleleProperties.Builder newBuilder(AlleleProto.AlleleProperties prototype)

toBuilder

public AlleleProto.AlleleProperties.Builder toBuilder()

Specified by:

toBuilder in interface com.google.protobuf.Message

Specified by:

toBuilder in interface com.google.protobuf.MessageLite

newBuilderForType

protected AlleleProto.AlleleProperties.Builder newBuilderForType(com.google.protobuf.GeneratedMessageV3.BuilderParent parent)

Specified by:

newBuilderForType in class com.google.protobuf.GeneratedMessageV3

getDefaultInstance

public static AlleleProto.AlleleProperties getDefaultInstance()

parser

public static com.google.protobuf.Parser<AlleleProto.AlleleProperties> parser()

getParserForType

public com.google.protobuf.Parser<AlleleProto.AlleleProperties> getParserForType()

Specified by:

getParserForType in interface com.google.protobuf.Message

Specified by:

getParserForType in interface com.google.protobuf.MessageLite

Overrides:

getParserForType in class com.google.protobuf.GeneratedMessageV3

getDefaultInstanceForType

public AlleleProto.AlleleProperties getDefaultInstanceForType()

Specified by:

getDefaultInstanceForType in interface com.google.protobuf.MessageLiteOrBuilder

Specified by:

getDefaultInstanceForType in interface com.google.protobuf.MessageOrBuilder