Package org.monarchinitiative.exomiser.core.proto

Class AlleleProto.Frequency

java.lang.Object

com.google.protobuf.AbstractMessageLite

com.google.protobuf.AbstractMessage

com.google.protobuf.GeneratedMessageV3

org.monarchinitiative.exomiser.core.proto.AlleleProto.Frequency

All Implemented Interfaces:

com.google.protobuf.Message, com.google.protobuf.MessageLite, com.google.protobuf.MessageLiteOrBuilder, com.google.protobuf.MessageOrBuilder, Serializable, AlleleProto.FrequencyOrBuilder

Enclosing class:

AlleleProto

public static final class AlleleProto.Frequency
extends com.google.protobuf.GeneratedMessageV3
implements AlleleProto.FrequencyOrBuilder

Protobuf type Frequency

See Also:

• Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static final class	AlleleProto.Frequency.Builder	Protobuf type Frequency

Nested classes/interfaces inherited from class com.google.protobuf.GeneratedMessageV3

com.google.protobuf.GeneratedMessageV3.BuilderParent, com.google.protobuf.GeneratedMessageV3.ExtendableBuilder<MessageType extends com.google.protobuf.GeneratedMessageV3.ExtendableMessage,BuilderType extends com.google.protobuf.GeneratedMessageV3.ExtendableBuilder<MessageType,BuilderType>>, com.google.protobuf.GeneratedMessageV3.ExtendableMessage<MessageType extends com.google.protobuf.GeneratedMessageV3.ExtendableMessage>, com.google.protobuf.GeneratedMessageV3.ExtendableMessageOrBuilder<MessageType extends com.google.protobuf.GeneratedMessageV3.ExtendableMessage>, com.google.protobuf.GeneratedMessageV3.FieldAccessorTable, com.google.protobuf.GeneratedMessageV3.UnusedPrivateParameter

Nested classes/interfaces inherited from class com.google.protobuf.AbstractMessageLite

com.google.protobuf.AbstractMessageLite.InternalOneOfEnum

Field Summary

Fields

Modifier and Type	Field	Description
static final int	AC_FIELD_NUMBER
static final int	AN_FIELD_NUMBER
static final int	FREQUENCY_FIELD_NUMBER
static final int	FREQUENCYSOURCE_FIELD_NUMBER
static final int	HOM_FIELD_NUMBER

Fields inherited from class com.google.protobuf.GeneratedMessageV3

alwaysUseFieldBuilders, unknownFields

Fields inherited from class com.google.protobuf.AbstractMessage

memoizedSize

Fields inherited from class com.google.protobuf.AbstractMessageLite

memoizedHashCode

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object obj)
int	getAc()	AF doesn't need storing as it is calculated as AC/AN
int	getAn()	1-3 bytes (Varint - 2^24 = 16777216 max)
static AlleleProto.Frequency	getDefaultInstance()
AlleleProto.Frequency	getDefaultInstanceForType()
static final com.google.protobuf.Descriptors.Descriptor	getDescriptor()
float	getFrequency()	4 bytes
AlleleProto.FrequencySource	getFrequencySource()	1 byte (Varint)
int	getFrequencySourceValue()	1 byte (Varint)
int	getHom()	1 byte
com.google.protobuf.Parser<AlleleProto.Frequency>	getParserForType()
int	getSerializedSize()
final com.google.protobuf.UnknownFieldSet	getUnknownFields()
int	hashCode()
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable	internalGetFieldAccessorTable()
final boolean	isInitialized()
static AlleleProto.Frequency.Builder	newBuilder()
static AlleleProto.Frequency.Builder	newBuilder(AlleleProto.Frequency prototype)
AlleleProto.Frequency.Builder	newBuilderForType()
protected AlleleProto.Frequency.Builder	newBuilderForType(com.google.protobuf.GeneratedMessageV3.BuilderParent parent)
protected Object	newInstance(com.google.protobuf.GeneratedMessageV3.UnusedPrivateParameter unused)
static AlleleProto.Frequency	parseDelimitedFrom(InputStream input)
static AlleleProto.Frequency	parseDelimitedFrom(InputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static AlleleProto.Frequency	parseFrom(byte[] data)
static AlleleProto.Frequency	parseFrom(byte[] data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static AlleleProto.Frequency	parseFrom(com.google.protobuf.ByteString data)
static AlleleProto.Frequency	parseFrom(com.google.protobuf.ByteString data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static AlleleProto.Frequency	parseFrom(com.google.protobuf.CodedInputStream input)
static AlleleProto.Frequency	parseFrom(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static AlleleProto.Frequency	parseFrom(InputStream input)
static AlleleProto.Frequency	parseFrom(InputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static AlleleProto.Frequency	parseFrom(ByteBuffer data)
static AlleleProto.Frequency	parseFrom(ByteBuffer data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static com.google.protobuf.Parser<AlleleProto.Frequency>	parser()
AlleleProto.Frequency.Builder	toBuilder()
void	writeTo(com.google.protobuf.CodedOutputStream output)

Methods inherited from class com.google.protobuf.GeneratedMessageV3

canUseUnsafe, computeStringSize, computeStringSizeNoTag, emptyBooleanList, emptyDoubleList, emptyFloatList, emptyIntList, emptyLongList, getAllFields, getDescriptorForType, getField, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, hasField, hasOneof, internalGetMapField, makeExtensionsImmutable, mergeFromAndMakeImmutableInternal, mutableCopy, mutableCopy, mutableCopy, mutableCopy, mutableCopy, newBooleanList, newBuilderForType, newDoubleList, newFloatList, newIntList, newLongList, parseDelimitedWithIOException, parseDelimitedWithIOException, parseUnknownField, parseUnknownFieldProto3, parseWithIOException, parseWithIOException, parseWithIOException, parseWithIOException, serializeBooleanMapTo, serializeIntegerMapTo, serializeLongMapTo, serializeStringMapTo, writeReplace, writeString, writeStringNoTag

Methods inherited from class com.google.protobuf.AbstractMessage

findInitializationErrors, getInitializationErrorString, hashBoolean, hashEnum, hashEnumList, hashFields, hashLong, toString

Methods inherited from class com.google.protobuf.AbstractMessageLite

addAll, addAll, checkByteStringIsUtf8, toByteArray, toByteString, writeDelimitedTo, writeTo

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.google.protobuf.MessageLite

toByteArray, toByteString, writeDelimitedTo, writeTo

Methods inherited from interface com.google.protobuf.MessageOrBuilder

findInitializationErrors, getAllFields, getDescriptorForType, getField, getInitializationErrorString, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, hasField, hasOneof

Field Details

FREQUENCYSOURCE_FIELD_NUMBER

public static final int FREQUENCYSOURCE_FIELD_NUMBER

See Also:

• Constant Field Values

FREQUENCY_FIELD_NUMBER

public static final int FREQUENCY_FIELD_NUMBER

See Also:

• Constant Field Values

AC_FIELD_NUMBER

public static final int AC_FIELD_NUMBER

See Also:

• Constant Field Values

AN_FIELD_NUMBER

public static final int AN_FIELD_NUMBER

See Also:

• Constant Field Values

HOM_FIELD_NUMBER

public static final int HOM_FIELD_NUMBER

See Also:

• Constant Field Values

Method Details

newInstance

protected Object newInstance(com.google.protobuf.GeneratedMessageV3.UnusedPrivateParameter unused)

Overrides:

newInstance in class com.google.protobuf.GeneratedMessageV3

getUnknownFields

public final com.google.protobuf.UnknownFieldSet getUnknownFields()

Specified by:

getUnknownFields in interface com.google.protobuf.MessageOrBuilder

Overrides:

getUnknownFields in class com.google.protobuf.GeneratedMessageV3

getDescriptor

public static final com.google.protobuf.Descriptors.Descriptor getDescriptor()

internalGetFieldAccessorTable

protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable internalGetFieldAccessorTable()

Specified by:

internalGetFieldAccessorTable in class com.google.protobuf.GeneratedMessageV3

getFrequencySourceValue

public int getFrequencySourceValue()

 1 byte (Varint)
 

.FrequencySource frequencySource = 1;

Specified by:

getFrequencySourceValue in interface AlleleProto.FrequencyOrBuilder

Returns:

The enum numeric value on the wire for frequencySource.

getFrequencySource

public AlleleProto.FrequencySource getFrequencySource()

 1 byte (Varint)
 

.FrequencySource frequencySource = 1;

Specified by:

getFrequencySource in interface AlleleProto.FrequencyOrBuilder

Returns:

The frequencySource.

getFrequency

public float getFrequency()

 4 bytes
 

float frequency = 2;

Specified by:

getFrequency in interface AlleleProto.FrequencyOrBuilder

Returns:

The frequency.

getAc

public int getAc()

 AF doesn't need storing as it is calculated as AC/AN
 

int32 ac = 3;

Specified by:

getAc in interface AlleleProto.FrequencyOrBuilder

Returns:

The ac.

getAn

public int getAn()

 1-3 bytes (Varint - 2^24 = 16777216 max)
 

int32 an = 4;

Specified by:

getAn in interface AlleleProto.FrequencyOrBuilder

Returns:

The an.

getHom

public int getHom()

 1 byte
 

int32 hom = 5;

Specified by:

getHom in interface AlleleProto.FrequencyOrBuilder

Returns:

The hom.

isInitialized

public final boolean isInitialized()

Specified by:

isInitialized in interface com.google.protobuf.MessageLiteOrBuilder

Overrides:

isInitialized in class com.google.protobuf.GeneratedMessageV3

writeTo

public void writeTo(com.google.protobuf.CodedOutputStream output)
             throws IOException

Specified by:

writeTo in interface com.google.protobuf.MessageLite

Overrides:

writeTo in class com.google.protobuf.GeneratedMessageV3

Throws:

IOException

getSerializedSize

public int getSerializedSize()

Specified by:

getSerializedSize in interface com.google.protobuf.MessageLite

Overrides:

getSerializedSize in class com.google.protobuf.GeneratedMessageV3

equals

public boolean equals(Object obj)

Specified by:

equals in interface com.google.protobuf.Message

Overrides:

equals in class com.google.protobuf.AbstractMessage

hashCode

public int hashCode()

Specified by:

hashCode in interface com.google.protobuf.Message

Overrides:

hashCode in class com.google.protobuf.AbstractMessage

parseFrom

public static AlleleProto.Frequency parseFrom(ByteBuffer data)
                                       throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static AlleleProto.Frequency parseFrom(ByteBuffer data,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                       throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static AlleleProto.Frequency parseFrom(com.google.protobuf.ByteString data)
                                       throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static AlleleProto.Frequency parseFrom(com.google.protobuf.ByteString data,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                       throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static AlleleProto.Frequency parseFrom(byte[] data)
                                       throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static AlleleProto.Frequency parseFrom(byte[] data,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                       throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static AlleleProto.Frequency parseFrom(InputStream input)
                                       throws IOException

Throws:

IOException

parseFrom

public static AlleleProto.Frequency parseFrom(InputStream input,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                       throws IOException

Throws:

IOException

parseDelimitedFrom

public static AlleleProto.Frequency parseDelimitedFrom(InputStream input)
                                                throws IOException

Throws:

IOException

parseDelimitedFrom

public static AlleleProto.Frequency parseDelimitedFrom(InputStream input,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                                throws IOException

Throws:

IOException

parseFrom

public static AlleleProto.Frequency parseFrom(com.google.protobuf.CodedInputStream input)
                                       throws IOException

Throws:

IOException

parseFrom

public static AlleleProto.Frequency parseFrom(com.google.protobuf.CodedInputStream input,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                       throws IOException

Throws:

IOException

newBuilderForType

public AlleleProto.Frequency.Builder newBuilderForType()

Specified by:

newBuilderForType in interface com.google.protobuf.Message

Specified by:

newBuilderForType in interface com.google.protobuf.MessageLite

newBuilder

public static AlleleProto.Frequency.Builder newBuilder()

newBuilder

public static AlleleProto.Frequency.Builder newBuilder(AlleleProto.Frequency prototype)

toBuilder

public AlleleProto.Frequency.Builder toBuilder()

Specified by:

toBuilder in interface com.google.protobuf.Message

Specified by:

toBuilder in interface com.google.protobuf.MessageLite

newBuilderForType

protected AlleleProto.Frequency.Builder newBuilderForType(com.google.protobuf.GeneratedMessageV3.BuilderParent parent)

Specified by:

newBuilderForType in class com.google.protobuf.GeneratedMessageV3

getDefaultInstance

public static AlleleProto.Frequency getDefaultInstance()

parser

public static com.google.protobuf.Parser<AlleleProto.Frequency> parser()

getParserForType

public com.google.protobuf.Parser<AlleleProto.Frequency> getParserForType()

Specified by:

getParserForType in interface com.google.protobuf.Message

Specified by:

getParserForType in interface com.google.protobuf.MessageLite

Overrides:

getParserForType in class com.google.protobuf.GeneratedMessageV3

getDefaultInstanceForType

public AlleleProto.Frequency getDefaultInstanceForType()

Specified by:

getDefaultInstanceForType in interface com.google.protobuf.MessageLiteOrBuilder

Specified by:

getDefaultInstanceForType in interface com.google.protobuf.MessageOrBuilder