Package org.monarchinitiative.exomiser.core.proto

Class AlleleProto.Frequency.Builder

java.lang.Object
com.google.protobuf.AbstractMessageLite.Builder
com.google.protobuf.AbstractMessage.Builder<BuilderType>
com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.Frequency.Builder>
org.monarchinitiative.exomiser.core.proto.AlleleProto.Frequency.Builder
All Implemented Interfaces:
com.google.protobuf.Message.Builder, com.google.protobuf.MessageLite.Builder, com.google.protobuf.MessageLiteOrBuilder, com.google.protobuf.MessageOrBuilder, Cloneable, AlleleProto.FrequencyOrBuilder
Enclosing class:
AlleleProto.Frequency
public static final class AlleleProto.Frequency.Builder extends com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.Frequency.Builder> implements AlleleProto.FrequencyOrBuilder
Protobuf type Frequency

  • Method Details

    • getDescriptor

      public static final com.google.protobuf.Descriptors.Descriptor getDescriptor()

    • internalGetFieldAccessorTable

      protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable internalGetFieldAccessorTable()
      Specified by:
      internalGetFieldAccessorTable in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.Frequency.Builder>

    • clear

      public AlleleProto.Frequency.Builder clear()
      Specified by:
      clear in interface com.google.protobuf.Message.Builder
      Specified by:
      clear in interface com.google.protobuf.MessageLite.Builder
      Overrides:
      clear in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.Frequency.Builder>

    • getDescriptorForType

      public com.google.protobuf.Descriptors.Descriptor getDescriptorForType()
      Specified by:
      getDescriptorForType in interface com.google.protobuf.Message.Builder
      Specified by:
      getDescriptorForType in interface com.google.protobuf.MessageOrBuilder
      Overrides:
      getDescriptorForType in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.Frequency.Builder>

    • getDefaultInstanceForType

      public AlleleProto.Frequency getDefaultInstanceForType()
      Specified by:
      getDefaultInstanceForType in interface com.google.protobuf.MessageLiteOrBuilder
      Specified by:
      getDefaultInstanceForType in interface com.google.protobuf.MessageOrBuilder

    • build

      public AlleleProto.Frequency build()
      Specified by:
      build in interface com.google.protobuf.Message.Builder
      Specified by:
      build in interface com.google.protobuf.MessageLite.Builder

    • buildPartial

      public AlleleProto.Frequency buildPartial()
      Specified by:
      buildPartial in interface com.google.protobuf.Message.Builder
      Specified by:
      buildPartial in interface com.google.protobuf.MessageLite.Builder

    • clone

      public AlleleProto.Frequency.Builder clone()
      Specified by:
      clone in interface com.google.protobuf.Message.Builder
      Specified by:
      clone in interface com.google.protobuf.MessageLite.Builder
      Overrides:
      clone in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.Frequency.Builder>

    • setField

      public AlleleProto.Frequency.Builder setField(com.google.protobuf.Descriptors.FieldDescriptor field, Object value)
      Specified by:
      setField in interface com.google.protobuf.Message.Builder
      Overrides:
      setField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.Frequency.Builder>

    • clearField

      public AlleleProto.Frequency.Builder clearField(com.google.protobuf.Descriptors.FieldDescriptor field)
      Specified by:
      clearField in interface com.google.protobuf.Message.Builder
      Overrides:
      clearField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.Frequency.Builder>

    • clearOneof

      public AlleleProto.Frequency.Builder clearOneof(com.google.protobuf.Descriptors.OneofDescriptor oneof)
      Specified by:
      clearOneof in interface com.google.protobuf.Message.Builder
      Overrides:
      clearOneof in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.Frequency.Builder>

    • setRepeatedField

      public AlleleProto.Frequency.Builder setRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field, int index, Object value)
      Specified by:
      setRepeatedField in interface com.google.protobuf.Message.Builder
      Overrides:
      setRepeatedField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.Frequency.Builder>

    • addRepeatedField

      public AlleleProto.Frequency.Builder addRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field, Object value)
      Specified by:
      addRepeatedField in interface com.google.protobuf.Message.Builder
      Overrides:
      addRepeatedField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.Frequency.Builder>

    • mergeFrom

      public AlleleProto.Frequency.Builder mergeFrom(com.google.protobuf.Message other)
      Specified by:
      mergeFrom in interface com.google.protobuf.Message.Builder
      Overrides:
      mergeFrom in class com.google.protobuf.AbstractMessage.Builder<AlleleProto.Frequency.Builder>

    • mergeFrom

      public AlleleProto.Frequency.Builder mergeFrom(AlleleProto.Frequency other)

    • isInitialized

      public final boolean isInitialized()
      Specified by:
      isInitialized in interface com.google.protobuf.MessageLiteOrBuilder
      Overrides:
      isInitialized in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.Frequency.Builder>

    • mergeFrom

      public AlleleProto.Frequency.Builder mergeFrom(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry) throws IOException
      Specified by:
      mergeFrom in interface com.google.protobuf.Message.Builder
      Specified by:
      mergeFrom in interface com.google.protobuf.MessageLite.Builder
      Overrides:
      mergeFrom in class com.google.protobuf.AbstractMessage.Builder<AlleleProto.Frequency.Builder>
      Throws:
      IOException

    • getFrequencySourceValue

      public int getFrequencySourceValue()
       1 byte (Varint)
      .FrequencySource frequencySource = 1;
      Specified by:
      getFrequencySourceValue in interface AlleleProto.FrequencyOrBuilder
      Returns:
      The enum numeric value on the wire for frequencySource.

    • setFrequencySourceValue

      public AlleleProto.Frequency.Builder setFrequencySourceValue(int value)
       1 byte (Varint)
      .FrequencySource frequencySource = 1;
      Parameters:
      value - The enum numeric value on the wire for frequencySource to set.
      Returns:
      This builder for chaining.

    • getFrequencySource

      public AlleleProto.FrequencySource getFrequencySource()
       1 byte (Varint)
      .FrequencySource frequencySource = 1;
      Specified by:
      getFrequencySource in interface AlleleProto.FrequencyOrBuilder
      Returns:
      The frequencySource.

    • setFrequencySource

      public AlleleProto.Frequency.Builder setFrequencySource(AlleleProto.FrequencySource value)
       1 byte (Varint)
      .FrequencySource frequencySource = 1;
      Parameters:
      value - The frequencySource to set.
      Returns:
      This builder for chaining.

    • clearFrequencySource

      public AlleleProto.Frequency.Builder clearFrequencySource()
       1 byte (Varint)
      .FrequencySource frequencySource = 1;
      Returns:
      This builder for chaining.

    • getFrequency

      public float getFrequency()
       4 bytes
      float frequency = 2;
      Specified by:
      getFrequency in interface AlleleProto.FrequencyOrBuilder
      Returns:
      The frequency.

    • setFrequency

      public AlleleProto.Frequency.Builder setFrequency(float value)
       4 bytes
      float frequency = 2;
      Parameters:
      value - The frequency to set.
      Returns:
      This builder for chaining.

    • clearFrequency

      public AlleleProto.Frequency.Builder clearFrequency()
       4 bytes
      float frequency = 2;
      Returns:
      This builder for chaining.

    • getAc

      public int getAc()
       AF doesn't need storing as it is calculated as AC/AN
      int32 ac = 3;
      Specified by:
      getAc in interface AlleleProto.FrequencyOrBuilder
      Returns:
      The ac.

    • setAc

      public AlleleProto.Frequency.Builder setAc(int value)
       AF doesn't need storing as it is calculated as AC/AN
      int32 ac = 3;
      Parameters:
      value - The ac to set.
      Returns:
      This builder for chaining.

    • clearAc

      public AlleleProto.Frequency.Builder clearAc()
       AF doesn't need storing as it is calculated as AC/AN
      int32 ac = 3;
      Returns:
      This builder for chaining.

    • getAn

      public int getAn()
       1-3 bytes (Varint - 2^24 = 16777216 max)
      int32 an = 4;
      Specified by:
      getAn in interface AlleleProto.FrequencyOrBuilder
      Returns:
      The an.

    • setAn

      public AlleleProto.Frequency.Builder setAn(int value)
       1-3 bytes (Varint - 2^24 = 16777216 max)
      int32 an = 4;
      Parameters:
      value - The an to set.
      Returns:
      This builder for chaining.

    • clearAn

      public AlleleProto.Frequency.Builder clearAn()
       1-3 bytes (Varint - 2^24 = 16777216 max)
      int32 an = 4;
      Returns:
      This builder for chaining.

    • getHom

      public int getHom()
       1 byte
      int32 hom = 5;
      Specified by:
      getHom in interface AlleleProto.FrequencyOrBuilder
      Returns:
      The hom.

    • setHom

      public AlleleProto.Frequency.Builder setHom(int value)
       1 byte
      int32 hom = 5;
      Parameters:
      value - The hom to set.
      Returns:
      This builder for chaining.

    • clearHom

      public AlleleProto.Frequency.Builder clearHom()
       1 byte
      int32 hom = 5;
      Returns:
      This builder for chaining.

    • setUnknownFields

      public final AlleleProto.Frequency.Builder setUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields)
      Specified by:
      setUnknownFields in interface com.google.protobuf.Message.Builder
      Overrides:
      setUnknownFields in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.Frequency.Builder>

    • mergeUnknownFields

      public final AlleleProto.Frequency.Builder mergeUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields)
      Specified by:
      mergeUnknownFields in interface com.google.protobuf.Message.Builder
      Overrides:
      mergeUnknownFields in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.Frequency.Builder>