Serialized Form

Package org.monarchinitiative.exomiser.core.proto

Class org.monarchinitiative.exomiser.core.proto.AlleleProto.AlleleKey

class AlleleKey extends com.google.protobuf.GeneratedMessageV3 implements Serializable

serialVersionUID:

0L

Serialized Fields

alt_

Object alt_

chr_

int chr_

memoizedIsInitialized

byte memoizedIsInitialized

position_

int position_

ref_

Object ref_

Class org.monarchinitiative.exomiser.core.proto.AlleleProto.AlleleProperties

class AlleleProperties extends com.google.protobuf.GeneratedMessageV3 implements Serializable

serialVersionUID:

0L

Serialized Fields

clinVar_

AlleleProto.ClinVar clinVar_

frequencies_

List<AlleleProto.Frequency> frequencies_

memoizedIsInitialized

byte memoizedIsInitialized

pathogenicityScores_

List<AlleleProto.PathogenicityScore> pathogenicityScores_

properties_

com.google.protobuf.MapField<String,Float> properties_

rsId_

Object rsId_

Class org.monarchinitiative.exomiser.core.proto.AlleleProto.ClinVar

class ClinVar extends com.google.protobuf.GeneratedMessageV3 implements Serializable

serialVersionUID:

0L

Serialized Fields

alleleId_

Object alleleId_

clinSigCounts_

com.google.protobuf.MapField<String,Integer> clinSigCounts_

geneId_

Object geneId_

geneSymbol_

Object geneSymbol_

hgvsCdna_

Object hgvsCdna_

hgvsProtein_

Object hgvsProtein_

includedAlleles_

com.google.protobuf.MapField<String,Integer> includedAlleles_

memoizedIsInitialized

byte memoizedIsInitialized

primaryInterpretation_

int primaryInterpretation_

reviewStatus_

int reviewStatus_

secondaryInterpretations_

List<Integer> secondaryInterpretations_

secondaryInterpretationsMemoizedSerializedSize

int secondaryInterpretationsMemoizedSerializedSize

variantEffect_

int variantEffect_

variationId_

Object variationId_

Class org.monarchinitiative.exomiser.core.proto.AlleleProto.Frequency

class Frequency extends com.google.protobuf.GeneratedMessageV3 implements Serializable

serialVersionUID:

0L

Serialized Fields

ac_

int ac_

an_

int an_

frequency_

float frequency_

frequencySource_

int frequencySource_

hom_

int hom_

memoizedIsInitialized

byte memoizedIsInitialized

Class org.monarchinitiative.exomiser.core.proto.AlleleProto.PathogenicityScore

class PathogenicityScore extends com.google.protobuf.GeneratedMessageV3 implements Serializable

serialVersionUID:

0L

Serialized Fields

memoizedIsInitialized

byte memoizedIsInitialized

pathogenicitySource_

int pathogenicitySource_

score_

float score_

Package org.monarchinitiative.lirical.core.analysis

Exception org.monarchinitiative.lirical.core.analysis.LiricalAnalysisException

class LiricalAnalysisException extends LiricalException implements Serializable

Exception org.monarchinitiative.lirical.core.analysis.LiricalParseException

class LiricalParseException extends LiricalException implements Serializable

Package org.monarchinitiative.lirical.core.exception

Exception org.monarchinitiative.lirical.core.exception.LiricalException

class LiricalException extends Exception implements Serializable

Exception org.monarchinitiative.lirical.core.exception.LiricalRuntimeException

class LiricalRuntimeException extends RuntimeException implements Serializable

Exception org.monarchinitiative.lirical.core.exception.LiricalTermFrequencyException

class LiricalTermFrequencyException extends LiricalException implements Serializable

Package org.monarchinitiative.lirical.exomiser_db_adapter

Exception org.monarchinitiative.lirical.exomiser_db_adapter.ExomiserResourceException

class ExomiserResourceException extends LiricalException implements Serializable

Exception org.monarchinitiative.lirical.exomiser_db_adapter.ExomiserResourceRuntimeException

class ExomiserResourceRuntimeException extends LiricalRuntimeException implements Serializable

Package org.monarchinitiative.lirical.exomiser_db_adapter.serializers

Exception org.monarchinitiative.lirical.exomiser_db_adapter.serializers.InvalidAlleleProtoException

class InvalidAlleleProtoException extends RuntimeException implements Serializable

Package org.monarchinitiative.lirical.io

Exception org.monarchinitiative.lirical.io.LiricalDataException

class LiricalDataException extends LiricalException implements Serializable

Package org.monarchinitiative.lirical.io.analysis

Exception org.monarchinitiative.lirical.io.analysis.PhenopacketImportException

class PhenopacketImportException extends LiricalParseException implements Serializable