Class AlleleProto.AlleleProperties.Builder
java.lang.Object
com.google.protobuf.AbstractMessageLite.Builder
com.google.protobuf.AbstractMessage.Builder<BuilderType>
com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
org.monarchinitiative.exomiser.core.proto.AlleleProto.AlleleProperties.Builder
- All Implemented Interfaces:
com.google.protobuf.Message.Builder
,com.google.protobuf.MessageLite.Builder
,com.google.protobuf.MessageLiteOrBuilder
,com.google.protobuf.MessageOrBuilder
,Cloneable
,AlleleProto.AllelePropertiesOrBuilder
- Enclosing class:
- AlleleProto.AlleleProperties
public static final class AlleleProto.AlleleProperties.Builder
extends com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
implements AlleleProto.AllelePropertiesOrBuilder
Protobuf type
AlleleProperties
-
Method Summary
Modifier and TypeMethodDescriptionaddAllFrequencies
(Iterable<? extends AlleleProto.Frequency> values) repeated .Frequency frequencies = 4;
addAllPathogenicityScores
(Iterable<? extends AlleleProto.PathogenicityScore> values) repeated .PathogenicityScore pathogenicityScores = 5;
addFrequencies
(int index, AlleleProto.Frequency value) repeated .Frequency frequencies = 4;
addFrequencies
(int index, AlleleProto.Frequency.Builder builderForValue) repeated .Frequency frequencies = 4;
repeated .Frequency frequencies = 4;
addFrequencies
(AlleleProto.Frequency.Builder builderForValue) repeated .Frequency frequencies = 4;
repeated .Frequency frequencies = 4;
addFrequenciesBuilder
(int index) repeated .Frequency frequencies = 4;
addPathogenicityScores
(int index, AlleleProto.PathogenicityScore value) repeated .PathogenicityScore pathogenicityScores = 5;
addPathogenicityScores
(int index, AlleleProto.PathogenicityScore.Builder builderForValue) repeated .PathogenicityScore pathogenicityScores = 5;
repeated .PathogenicityScore pathogenicityScores = 5;
addPathogenicityScores
(AlleleProto.PathogenicityScore.Builder builderForValue) repeated .PathogenicityScore pathogenicityScores = 5;
repeated .PathogenicityScore pathogenicityScores = 5;
addPathogenicityScoresBuilder
(int index) repeated .PathogenicityScore pathogenicityScores = 5;
addRepeatedField
(com.google.protobuf.Descriptors.FieldDescriptor field, Object value) build()
clear()
.ClinVar clinVar = 3;
clearField
(com.google.protobuf.Descriptors.FieldDescriptor field) repeated .Frequency frequencies = 4;
clearOneof
(com.google.protobuf.Descriptors.OneofDescriptor oneof) repeated .PathogenicityScore pathogenicityScores = 5;
Deprecated.string rs_id = 1;
clone()
boolean
containsProperties
(String key) Deprecated..ClinVar clinVar = 3;
.ClinVar clinVar = 3;
.ClinVar clinVar = 3;
static final com.google.protobuf.Descriptors.Descriptor
com.google.protobuf.Descriptors.Descriptor
getFrequencies
(int index) repeated .Frequency frequencies = 4;
getFrequenciesBuilder
(int index) repeated .Frequency frequencies = 4;
repeated .Frequency frequencies = 4;
int
repeated .Frequency frequencies = 4;
repeated .Frequency frequencies = 4;
getFrequenciesOrBuilder
(int index) repeated .Frequency frequencies = 4;
List<? extends AlleleProto.FrequencyOrBuilder>
repeated .Frequency frequencies = 4;
Deprecated.getPathogenicityScores
(int index) repeated .PathogenicityScore pathogenicityScores = 5;
getPathogenicityScoresBuilder
(int index) repeated .PathogenicityScore pathogenicityScores = 5;
repeated .PathogenicityScore pathogenicityScores = 5;
int
repeated .PathogenicityScore pathogenicityScores = 5;
repeated .PathogenicityScore pathogenicityScores = 5;
getPathogenicityScoresOrBuilder
(int index) repeated .PathogenicityScore pathogenicityScores = 5;
List<? extends AlleleProto.PathogenicityScoreOrBuilder>
repeated .PathogenicityScore pathogenicityScores = 5;
Deprecated.int
Deprecated.Deprecated.float
getPropertiesOrDefault
(String key, float defaultValue) Deprecated.float
Deprecated.getRsId()
string rs_id = 1;
com.google.protobuf.ByteString
string rs_id = 1;
boolean
.ClinVar clinVar = 3;
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
protected com.google.protobuf.MapField
internalGetMapField
(int number) protected com.google.protobuf.MapField
internalGetMutableMapField
(int number) final boolean
mergeClinVar
(AlleleProto.ClinVar value) .ClinVar clinVar = 3;
mergeFrom
(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry) mergeFrom
(com.google.protobuf.Message other) mergeUnknownFields
(com.google.protobuf.UnknownFieldSet unknownFields) putAllProperties
(Map<String, Float> values) Deprecated.putProperties
(String key, float value) Deprecated.removeFrequencies
(int index) repeated .Frequency frequencies = 4;
removePathogenicityScores
(int index) repeated .PathogenicityScore pathogenicityScores = 5;
removeProperties
(String key) Deprecated.setClinVar
(AlleleProto.ClinVar value) .ClinVar clinVar = 3;
setClinVar
(AlleleProto.ClinVar.Builder builderForValue) .ClinVar clinVar = 3;
setFrequencies
(int index, AlleleProto.Frequency value) repeated .Frequency frequencies = 4;
setFrequencies
(int index, AlleleProto.Frequency.Builder builderForValue) repeated .Frequency frequencies = 4;
setPathogenicityScores
(int index, AlleleProto.PathogenicityScore value) repeated .PathogenicityScore pathogenicityScores = 5;
setPathogenicityScores
(int index, AlleleProto.PathogenicityScore.Builder builderForValue) repeated .PathogenicityScore pathogenicityScores = 5;
setRepeatedField
(com.google.protobuf.Descriptors.FieldDescriptor field, int index, Object value) string rs_id = 1;
setRsIdBytes
(com.google.protobuf.ByteString value) string rs_id = 1;
setUnknownFields
(com.google.protobuf.UnknownFieldSet unknownFields) Methods inherited from class com.google.protobuf.GeneratedMessageV3.Builder
getAllFields, getField, getFieldBuilder, getOneofFieldDescriptor, getParentForChildren, getRepeatedField, getRepeatedFieldBuilder, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof, isClean, markClean, newBuilderForField, onBuilt, onChanged, setUnknownFieldsProto3
Methods inherited from class com.google.protobuf.AbstractMessage.Builder
findInitializationErrors, getInitializationErrorString, internalMergeFrom, mergeDelimitedFrom, mergeDelimitedFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, newUninitializedMessageException, toString
Methods inherited from class com.google.protobuf.AbstractMessageLite.Builder
addAll, addAll, mergeFrom, newUninitializedMessageException
Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
Methods inherited from interface com.google.protobuf.MessageLite.Builder
mergeFrom
Methods inherited from interface com.google.protobuf.MessageOrBuilder
findInitializationErrors, getAllFields, getField, getInitializationErrorString, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof
-
Method Details
-
getDescriptor
public static final com.google.protobuf.Descriptors.Descriptor getDescriptor() -
internalGetMapField
protected com.google.protobuf.MapField internalGetMapField(int number) - Overrides:
internalGetMapField
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
-
internalGetMutableMapField
protected com.google.protobuf.MapField internalGetMutableMapField(int number) - Overrides:
internalGetMutableMapField
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
-
internalGetFieldAccessorTable
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable internalGetFieldAccessorTable()- Specified by:
internalGetFieldAccessorTable
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
-
clear
- Specified by:
clear
in interfacecom.google.protobuf.Message.Builder
- Specified by:
clear
in interfacecom.google.protobuf.MessageLite.Builder
- Overrides:
clear
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
-
getDescriptorForType
public com.google.protobuf.Descriptors.Descriptor getDescriptorForType()- Specified by:
getDescriptorForType
in interfacecom.google.protobuf.Message.Builder
- Specified by:
getDescriptorForType
in interfacecom.google.protobuf.MessageOrBuilder
- Overrides:
getDescriptorForType
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
-
getDefaultInstanceForType
- Specified by:
getDefaultInstanceForType
in interfacecom.google.protobuf.MessageLiteOrBuilder
- Specified by:
getDefaultInstanceForType
in interfacecom.google.protobuf.MessageOrBuilder
-
build
- Specified by:
build
in interfacecom.google.protobuf.Message.Builder
- Specified by:
build
in interfacecom.google.protobuf.MessageLite.Builder
-
buildPartial
- Specified by:
buildPartial
in interfacecom.google.protobuf.Message.Builder
- Specified by:
buildPartial
in interfacecom.google.protobuf.MessageLite.Builder
-
clone
- Specified by:
clone
in interfacecom.google.protobuf.Message.Builder
- Specified by:
clone
in interfacecom.google.protobuf.MessageLite.Builder
- Overrides:
clone
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
-
setField
public AlleleProto.AlleleProperties.Builder setField(com.google.protobuf.Descriptors.FieldDescriptor field, Object value) - Specified by:
setField
in interfacecom.google.protobuf.Message.Builder
- Overrides:
setField
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
-
clearField
public AlleleProto.AlleleProperties.Builder clearField(com.google.protobuf.Descriptors.FieldDescriptor field) - Specified by:
clearField
in interfacecom.google.protobuf.Message.Builder
- Overrides:
clearField
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
-
clearOneof
public AlleleProto.AlleleProperties.Builder clearOneof(com.google.protobuf.Descriptors.OneofDescriptor oneof) - Specified by:
clearOneof
in interfacecom.google.protobuf.Message.Builder
- Overrides:
clearOneof
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
-
setRepeatedField
public AlleleProto.AlleleProperties.Builder setRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field, int index, Object value) - Specified by:
setRepeatedField
in interfacecom.google.protobuf.Message.Builder
- Overrides:
setRepeatedField
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
-
addRepeatedField
public AlleleProto.AlleleProperties.Builder addRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field, Object value) - Specified by:
addRepeatedField
in interfacecom.google.protobuf.Message.Builder
- Overrides:
addRepeatedField
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
-
mergeFrom
- Specified by:
mergeFrom
in interfacecom.google.protobuf.Message.Builder
- Overrides:
mergeFrom
in classcom.google.protobuf.AbstractMessage.Builder<AlleleProto.AlleleProperties.Builder>
-
mergeFrom
-
isInitialized
public final boolean isInitialized()- Specified by:
isInitialized
in interfacecom.google.protobuf.MessageLiteOrBuilder
- Overrides:
isInitialized
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
-
mergeFrom
public AlleleProto.AlleleProperties.Builder mergeFrom(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry) throws IOException - Specified by:
mergeFrom
in interfacecom.google.protobuf.Message.Builder
- Specified by:
mergeFrom
in interfacecom.google.protobuf.MessageLite.Builder
- Overrides:
mergeFrom
in classcom.google.protobuf.AbstractMessage.Builder<AlleleProto.AlleleProperties.Builder>
- Throws:
IOException
-
getRsId
string rs_id = 1;
- Specified by:
getRsId
in interfaceAlleleProto.AllelePropertiesOrBuilder
- Returns:
- The rsId.
-
getRsIdBytes
public com.google.protobuf.ByteString getRsIdBytes()string rs_id = 1;
- Specified by:
getRsIdBytes
in interfaceAlleleProto.AllelePropertiesOrBuilder
- Returns:
- The bytes for rsId.
-
setRsId
string rs_id = 1;
- Parameters:
value
- The rsId to set.- Returns:
- This builder for chaining.
-
clearRsId
string rs_id = 1;
- Returns:
- This builder for chaining.
-
setRsIdBytes
string rs_id = 1;
- Parameters:
value
- The bytes for rsId to set.- Returns:
- This builder for chaining.
-
getPropertiesCount
Deprecated.Description copied from interface:AlleleProto.AllelePropertiesOrBuilder
map<string, float> properties = 2 [deprecated = true];
- Specified by:
getPropertiesCount
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
containsProperties
Deprecated.map<string, float> properties = 2 [deprecated = true];
- Specified by:
containsProperties
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
getProperties
Deprecated.UsegetPropertiesMap()
instead.- Specified by:
getProperties
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
getPropertiesMap
Deprecated.map<string, float> properties = 2 [deprecated = true];
- Specified by:
getPropertiesMap
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
getPropertiesOrDefault
Deprecated.map<string, float> properties = 2 [deprecated = true];
- Specified by:
getPropertiesOrDefault
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
getPropertiesOrThrow
Deprecated.map<string, float> properties = 2 [deprecated = true];
- Specified by:
getPropertiesOrThrow
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
clearProperties
Deprecated. -
removeProperties
Deprecated.map<string, float> properties = 2 [deprecated = true];
-
getMutableProperties
Deprecated.Use alternate mutation accessors instead. -
putProperties
Deprecated.map<string, float> properties = 2 [deprecated = true];
-
putAllProperties
Deprecated.map<string, float> properties = 2 [deprecated = true];
-
hasClinVar
public boolean hasClinVar().ClinVar clinVar = 3;
- Specified by:
hasClinVar
in interfaceAlleleProto.AllelePropertiesOrBuilder
- Returns:
- Whether the clinVar field is set.
-
getClinVar
.ClinVar clinVar = 3;
- Specified by:
getClinVar
in interfaceAlleleProto.AllelePropertiesOrBuilder
- Returns:
- The clinVar.
-
setClinVar
.ClinVar clinVar = 3;
-
setClinVar
.ClinVar clinVar = 3;
-
mergeClinVar
.ClinVar clinVar = 3;
-
clearClinVar
.ClinVar clinVar = 3;
-
getClinVarBuilder
.ClinVar clinVar = 3;
-
getClinVarOrBuilder
.ClinVar clinVar = 3;
- Specified by:
getClinVarOrBuilder
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
getFrequenciesList
repeated .Frequency frequencies = 4;
- Specified by:
getFrequenciesList
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
getFrequenciesCount
public int getFrequenciesCount()repeated .Frequency frequencies = 4;
- Specified by:
getFrequenciesCount
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
getFrequencies
repeated .Frequency frequencies = 4;
- Specified by:
getFrequencies
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
setFrequencies
repeated .Frequency frequencies = 4;
-
setFrequencies
public AlleleProto.AlleleProperties.Builder setFrequencies(int index, AlleleProto.Frequency.Builder builderForValue) repeated .Frequency frequencies = 4;
-
addFrequencies
repeated .Frequency frequencies = 4;
-
addFrequencies
repeated .Frequency frequencies = 4;
-
addFrequencies
public AlleleProto.AlleleProperties.Builder addFrequencies(AlleleProto.Frequency.Builder builderForValue) repeated .Frequency frequencies = 4;
-
addFrequencies
public AlleleProto.AlleleProperties.Builder addFrequencies(int index, AlleleProto.Frequency.Builder builderForValue) repeated .Frequency frequencies = 4;
-
addAllFrequencies
public AlleleProto.AlleleProperties.Builder addAllFrequencies(Iterable<? extends AlleleProto.Frequency> values) repeated .Frequency frequencies = 4;
-
clearFrequencies
repeated .Frequency frequencies = 4;
-
removeFrequencies
repeated .Frequency frequencies = 4;
-
getFrequenciesBuilder
repeated .Frequency frequencies = 4;
-
getFrequenciesOrBuilder
repeated .Frequency frequencies = 4;
- Specified by:
getFrequenciesOrBuilder
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
getFrequenciesOrBuilderList
repeated .Frequency frequencies = 4;
- Specified by:
getFrequenciesOrBuilderList
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
addFrequenciesBuilder
repeated .Frequency frequencies = 4;
-
addFrequenciesBuilder
repeated .Frequency frequencies = 4;
-
getFrequenciesBuilderList
repeated .Frequency frequencies = 4;
-
getPathogenicityScoresList
repeated .PathogenicityScore pathogenicityScores = 5;
- Specified by:
getPathogenicityScoresList
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
getPathogenicityScoresCount
public int getPathogenicityScoresCount()repeated .PathogenicityScore pathogenicityScores = 5;
- Specified by:
getPathogenicityScoresCount
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
getPathogenicityScores
repeated .PathogenicityScore pathogenicityScores = 5;
- Specified by:
getPathogenicityScores
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
setPathogenicityScores
public AlleleProto.AlleleProperties.Builder setPathogenicityScores(int index, AlleleProto.PathogenicityScore value) repeated .PathogenicityScore pathogenicityScores = 5;
-
setPathogenicityScores
public AlleleProto.AlleleProperties.Builder setPathogenicityScores(int index, AlleleProto.PathogenicityScore.Builder builderForValue) repeated .PathogenicityScore pathogenicityScores = 5;
-
addPathogenicityScores
public AlleleProto.AlleleProperties.Builder addPathogenicityScores(AlleleProto.PathogenicityScore value) repeated .PathogenicityScore pathogenicityScores = 5;
-
addPathogenicityScores
public AlleleProto.AlleleProperties.Builder addPathogenicityScores(int index, AlleleProto.PathogenicityScore value) repeated .PathogenicityScore pathogenicityScores = 5;
-
addPathogenicityScores
public AlleleProto.AlleleProperties.Builder addPathogenicityScores(AlleleProto.PathogenicityScore.Builder builderForValue) repeated .PathogenicityScore pathogenicityScores = 5;
-
addPathogenicityScores
public AlleleProto.AlleleProperties.Builder addPathogenicityScores(int index, AlleleProto.PathogenicityScore.Builder builderForValue) repeated .PathogenicityScore pathogenicityScores = 5;
-
addAllPathogenicityScores
public AlleleProto.AlleleProperties.Builder addAllPathogenicityScores(Iterable<? extends AlleleProto.PathogenicityScore> values) repeated .PathogenicityScore pathogenicityScores = 5;
-
clearPathogenicityScores
repeated .PathogenicityScore pathogenicityScores = 5;
-
removePathogenicityScores
repeated .PathogenicityScore pathogenicityScores = 5;
-
getPathogenicityScoresBuilder
repeated .PathogenicityScore pathogenicityScores = 5;
-
getPathogenicityScoresOrBuilder
repeated .PathogenicityScore pathogenicityScores = 5;
- Specified by:
getPathogenicityScoresOrBuilder
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
getPathogenicityScoresOrBuilderList
public List<? extends AlleleProto.PathogenicityScoreOrBuilder> getPathogenicityScoresOrBuilderList()repeated .PathogenicityScore pathogenicityScores = 5;
- Specified by:
getPathogenicityScoresOrBuilderList
in interfaceAlleleProto.AllelePropertiesOrBuilder
-
addPathogenicityScoresBuilder
repeated .PathogenicityScore pathogenicityScores = 5;
-
addPathogenicityScoresBuilder
repeated .PathogenicityScore pathogenicityScores = 5;
-
getPathogenicityScoresBuilderList
repeated .PathogenicityScore pathogenicityScores = 5;
-
setUnknownFields
public final AlleleProto.AlleleProperties.Builder setUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields) - Specified by:
setUnknownFields
in interfacecom.google.protobuf.Message.Builder
- Overrides:
setUnknownFields
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
-
mergeUnknownFields
public final AlleleProto.AlleleProperties.Builder mergeUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields) - Specified by:
mergeUnknownFields
in interfacecom.google.protobuf.Message.Builder
- Overrides:
mergeUnknownFields
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
-