Package org.monarchinitiative.exomiser.core.proto

Class AlleleProto.AlleleProperties.Builder

java.lang.Object

com.google.protobuf.AbstractMessageLite.Builder

com.google.protobuf.AbstractMessage.Builder<BuilderType>

com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>

org.monarchinitiative.exomiser.core.proto.AlleleProto.AlleleProperties.Builder

All Implemented Interfaces:

com.google.protobuf.Message.Builder, com.google.protobuf.MessageLite.Builder, com.google.protobuf.MessageLiteOrBuilder, com.google.protobuf.MessageOrBuilder, Cloneable, AlleleProto.AllelePropertiesOrBuilder

Enclosing class:

AlleleProto.AlleleProperties

public static final class AlleleProto.AlleleProperties.Builder
extends com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>
implements AlleleProto.AllelePropertiesOrBuilder

Protobuf type AlleleProperties

Method Summary

Modifier and Type	Method	Description
AlleleProto.AlleleProperties.Builder	addRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field, Object value)
AlleleProto.AlleleProperties	build()
AlleleProto.AlleleProperties	buildPartial()
AlleleProto.AlleleProperties.Builder	clear()
AlleleProto.AlleleProperties.Builder	clearClinVar()	TODO: move to model or somewhere and then import here - this is also needed for output in results
AlleleProto.AlleleProperties.Builder	clearField(com.google.protobuf.Descriptors.FieldDescriptor field)
AlleleProto.AlleleProperties.Builder	clearOneof(com.google.protobuf.Descriptors.OneofDescriptor oneof)
AlleleProto.AlleleProperties.Builder	clearProperties()
AlleleProto.AlleleProperties.Builder	clearRsId()	string rs_id = 1;
AlleleProto.AlleleProperties.Builder	clone()
boolean	containsProperties(String key)	map<string, float> properties = 2;
AlleleProto.ClinVar	getClinVar()	TODO: move to model or somewhere and then import here - this is also needed for output in results
AlleleProto.ClinVar.Builder	getClinVarBuilder()	TODO: move to model or somewhere and then import here - this is also needed for output in results
AlleleProto.ClinVarOrBuilder	getClinVarOrBuilder()	TODO: move to model or somewhere and then import here - this is also needed for output in results
AlleleProto.AlleleProperties	getDefaultInstanceForType()
static final com.google.protobuf.Descriptors.Descriptor	getDescriptor()
com.google.protobuf.Descriptors.Descriptor	getDescriptorForType()
Map<String,Float>	getMutableProperties()	Deprecated.
Map<String,Float>	getProperties()	Deprecated.
int	getPropertiesCount()	map<string, float> properties = 2;
Map<String,Float>	getPropertiesMap()	map<string, float> properties = 2;
float	getPropertiesOrDefault(String key, float defaultValue)	map<string, float> properties = 2;
float	getPropertiesOrThrow(String key)	map<string, float> properties = 2;
String	getRsId()	string rs_id = 1;
com.google.protobuf.ByteString	getRsIdBytes()	string rs_id = 1;
boolean	hasClinVar()	TODO: move to model or somewhere and then import here - this is also needed for output in results
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable	internalGetFieldAccessorTable()
protected com.google.protobuf.MapField	internalGetMapField(int number)
protected com.google.protobuf.MapField	internalGetMutableMapField(int number)
final boolean	isInitialized()
AlleleProto.AlleleProperties.Builder	mergeClinVar(AlleleProto.ClinVar value)	TODO: move to model or somewhere and then import here - this is also needed for output in results
AlleleProto.AlleleProperties.Builder	mergeFrom(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
AlleleProto.AlleleProperties.Builder	mergeFrom(com.google.protobuf.Message other)
AlleleProto.AlleleProperties.Builder	mergeFrom(AlleleProto.AlleleProperties other)
final AlleleProto.AlleleProperties.Builder	mergeUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields)
AlleleProto.AlleleProperties.Builder	putAllProperties(Map<String,Float> values)	map<string, float> properties = 2;
AlleleProto.AlleleProperties.Builder	putProperties(String key, float value)	map<string, float> properties = 2;
AlleleProto.AlleleProperties.Builder	removeProperties(String key)	map<string, float> properties = 2;
AlleleProto.AlleleProperties.Builder	setClinVar(AlleleProto.ClinVar value)	TODO: move to model or somewhere and then import here - this is also needed for output in results
AlleleProto.AlleleProperties.Builder	setClinVar(AlleleProto.ClinVar.Builder builderForValue)	TODO: move to model or somewhere and then import here - this is also needed for output in results
AlleleProto.AlleleProperties.Builder	setField(com.google.protobuf.Descriptors.FieldDescriptor field, Object value)
AlleleProto.AlleleProperties.Builder	setRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field, int index, Object value)
AlleleProto.AlleleProperties.Builder	setRsId(String value)	string rs_id = 1;
AlleleProto.AlleleProperties.Builder	setRsIdBytes(com.google.protobuf.ByteString value)	string rs_id = 1;
final AlleleProto.AlleleProperties.Builder	setUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields)

Methods inherited from class com.google.protobuf.GeneratedMessageV3.Builder

getAllFields, getField, getFieldBuilder, getOneofFieldDescriptor, getParentForChildren, getRepeatedField, getRepeatedFieldBuilder, getRepeatedFieldCount, getUnknownFields, getUnknownFieldSetBuilder, hasField, hasOneof, isClean, markClean, mergeUnknownLengthDelimitedField, mergeUnknownVarintField, newBuilderForField, onBuilt, onChanged, parseUnknownField, setUnknownFieldSetBuilder, setUnknownFieldsProto3

Methods inherited from class com.google.protobuf.AbstractMessage.Builder

findInitializationErrors, getInitializationErrorString, internalMergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, newUninitializedMessageException, toString

Methods inherited from class com.google.protobuf.AbstractMessageLite.Builder

addAll, addAll, mergeDelimitedFrom, mergeDelimitedFrom, mergeFrom, newUninitializedMessageException

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.google.protobuf.Message.Builder

mergeDelimitedFrom, mergeDelimitedFrom

Methods inherited from interface com.google.protobuf.MessageLite.Builder

mergeFrom

Methods inherited from interface com.google.protobuf.MessageOrBuilder

findInitializationErrors, getAllFields, getField, getInitializationErrorString, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof

Method Details

getDescriptor

public static final com.google.protobuf.Descriptors.Descriptor getDescriptor()

internalGetMapField

protected com.google.protobuf.MapField internalGetMapField(int number)

Overrides:

internalGetMapField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>

internalGetMutableMapField

protected com.google.protobuf.MapField internalGetMutableMapField(int number)

Overrides:

internalGetMutableMapField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>

internalGetFieldAccessorTable

protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable internalGetFieldAccessorTable()

Specified by:

internalGetFieldAccessorTable in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>

clear

public AlleleProto.AlleleProperties.Builder clear()

Specified by:

clear in interface com.google.protobuf.Message.Builder

Specified by:

clear in interface com.google.protobuf.MessageLite.Builder

Overrides:

clear in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>

getDescriptorForType

public com.google.protobuf.Descriptors.Descriptor getDescriptorForType()

Specified by:

getDescriptorForType in interface com.google.protobuf.Message.Builder

Specified by:

getDescriptorForType in interface com.google.protobuf.MessageOrBuilder

Overrides:

getDescriptorForType in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>

getDefaultInstanceForType

public AlleleProto.AlleleProperties getDefaultInstanceForType()

Specified by:

getDefaultInstanceForType in interface com.google.protobuf.MessageLiteOrBuilder

Specified by:

getDefaultInstanceForType in interface com.google.protobuf.MessageOrBuilder

build

public AlleleProto.AlleleProperties build()

Specified by:

build in interface com.google.protobuf.Message.Builder

Specified by:

build in interface com.google.protobuf.MessageLite.Builder

buildPartial

public AlleleProto.AlleleProperties buildPartial()

Specified by:

buildPartial in interface com.google.protobuf.Message.Builder

Specified by:

buildPartial in interface com.google.protobuf.MessageLite.Builder

clone

public AlleleProto.AlleleProperties.Builder clone()

Specified by:

clone in interface com.google.protobuf.Message.Builder

Specified by:

clone in interface com.google.protobuf.MessageLite.Builder

Overrides:

clone in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>

setField

public AlleleProto.AlleleProperties.Builder setField(com.google.protobuf.Descriptors.FieldDescriptor field,
 Object value)

Specified by:

setField in interface com.google.protobuf.Message.Builder

Overrides:

setField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>

clearField

public AlleleProto.AlleleProperties.Builder clearField(com.google.protobuf.Descriptors.FieldDescriptor field)

Specified by:

clearField in interface com.google.protobuf.Message.Builder

Overrides:

clearField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>

clearOneof

public AlleleProto.AlleleProperties.Builder clearOneof(com.google.protobuf.Descriptors.OneofDescriptor oneof)

Specified by:

clearOneof in interface com.google.protobuf.Message.Builder

Overrides:

clearOneof in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>

setRepeatedField

public AlleleProto.AlleleProperties.Builder setRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field,
 int index,
 Object value)

Specified by:

setRepeatedField in interface com.google.protobuf.Message.Builder

Overrides:

setRepeatedField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>

addRepeatedField

public AlleleProto.AlleleProperties.Builder addRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field,
 Object value)

Specified by:

addRepeatedField in interface com.google.protobuf.Message.Builder

Overrides:

addRepeatedField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>

mergeFrom

public AlleleProto.AlleleProperties.Builder mergeFrom(com.google.protobuf.Message other)

Specified by:

mergeFrom in interface com.google.protobuf.Message.Builder

Overrides:

mergeFrom in class com.google.protobuf.AbstractMessage.Builder<AlleleProto.AlleleProperties.Builder>

mergeFrom

public AlleleProto.AlleleProperties.Builder mergeFrom(AlleleProto.AlleleProperties other)

isInitialized

public final boolean isInitialized()

Specified by:

isInitialized in interface com.google.protobuf.MessageLiteOrBuilder

Overrides:

isInitialized in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>

mergeFrom

public AlleleProto.AlleleProperties.Builder mergeFrom(com.google.protobuf.CodedInputStream input,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                               throws IOException

Specified by:

mergeFrom in interface com.google.protobuf.Message.Builder

Specified by:

mergeFrom in interface com.google.protobuf.MessageLite.Builder

Overrides:

mergeFrom in class com.google.protobuf.AbstractMessage.Builder<AlleleProto.AlleleProperties.Builder>

Throws:

IOException

getRsId

public String getRsId()

string rs_id = 1;

Specified by:

getRsId in interface AlleleProto.AllelePropertiesOrBuilder

Returns:

The rsId.

getRsIdBytes

public com.google.protobuf.ByteString getRsIdBytes()

string rs_id = 1;

Specified by:

getRsIdBytes in interface AlleleProto.AllelePropertiesOrBuilder

Returns:

The bytes for rsId.

setRsId

public AlleleProto.AlleleProperties.Builder setRsId(String value)

string rs_id = 1;

Parameters:

value - The rsId to set.

Returns:

This builder for chaining.

clearRsId

public AlleleProto.AlleleProperties.Builder clearRsId()

string rs_id = 1;

Returns:

This builder for chaining.

setRsIdBytes

public AlleleProto.AlleleProperties.Builder setRsIdBytes(com.google.protobuf.ByteString value)

string rs_id = 1;

Parameters:

value - The bytes for rsId to set.

Returns:

This builder for chaining.

getPropertiesCount

public int getPropertiesCount()

Description copied from interface: AlleleProto.AllelePropertiesOrBuilder

map<string, float> properties = 2;

Specified by:

getPropertiesCount in interface AlleleProto.AllelePropertiesOrBuilder

containsProperties

public boolean containsProperties(String key)

map<string, float> properties = 2;

Specified by:

containsProperties in interface AlleleProto.AllelePropertiesOrBuilder

getProperties

@Deprecated
public Map<String,Float> getProperties()

Deprecated.

Use getPropertiesMap() instead.

Specified by:

getProperties in interface AlleleProto.AllelePropertiesOrBuilder

getPropertiesMap

public Map<String,Float> getPropertiesMap()

map<string, float> properties = 2;

Specified by:

getPropertiesMap in interface AlleleProto.AllelePropertiesOrBuilder

getPropertiesOrDefault

public float getPropertiesOrDefault(String key,
 float defaultValue)

map<string, float> properties = 2;

Specified by:

getPropertiesOrDefault in interface AlleleProto.AllelePropertiesOrBuilder

getPropertiesOrThrow

public float getPropertiesOrThrow(String key)

map<string, float> properties = 2;

Specified by:

getPropertiesOrThrow in interface AlleleProto.AllelePropertiesOrBuilder

clearProperties

public AlleleProto.AlleleProperties.Builder clearProperties()

removeProperties

public AlleleProto.AlleleProperties.Builder removeProperties(String key)

map<string, float> properties = 2;

getMutableProperties

@Deprecated
public Map<String,Float> getMutableProperties()

Deprecated.

Use alternate mutation accessors instead.

putProperties

public AlleleProto.AlleleProperties.Builder putProperties(String key,
 float value)

map<string, float> properties = 2;

putAllProperties

public AlleleProto.AlleleProperties.Builder putAllProperties(Map<String,Float> values)

map<string, float> properties = 2;

hasClinVar

public boolean hasClinVar()

TODO: move to model or somewhere and then import here - this is also needed for output in results
 

.ClinVar clinVar = 3;

Specified by:

hasClinVar in interface AlleleProto.AllelePropertiesOrBuilder

Returns:

Whether the clinVar field is set.

getClinVar

public AlleleProto.ClinVar getClinVar()

TODO: move to model or somewhere and then import here - this is also needed for output in results
 

.ClinVar clinVar = 3;

Specified by:

getClinVar in interface AlleleProto.AllelePropertiesOrBuilder

Returns:

The clinVar.

setClinVar

public AlleleProto.AlleleProperties.Builder setClinVar(AlleleProto.ClinVar value)

TODO: move to model or somewhere and then import here - this is also needed for output in results
 

.ClinVar clinVar = 3;

setClinVar

public AlleleProto.AlleleProperties.Builder setClinVar(AlleleProto.ClinVar.Builder builderForValue)

TODO: move to model or somewhere and then import here - this is also needed for output in results
 

.ClinVar clinVar = 3;

mergeClinVar

public AlleleProto.AlleleProperties.Builder mergeClinVar(AlleleProto.ClinVar value)

TODO: move to model or somewhere and then import here - this is also needed for output in results
 

.ClinVar clinVar = 3;

clearClinVar

public AlleleProto.AlleleProperties.Builder clearClinVar()

TODO: move to model or somewhere and then import here - this is also needed for output in results
 

.ClinVar clinVar = 3;

getClinVarBuilder

public AlleleProto.ClinVar.Builder getClinVarBuilder()

TODO: move to model or somewhere and then import here - this is also needed for output in results
 

.ClinVar clinVar = 3;

getClinVarOrBuilder

public AlleleProto.ClinVarOrBuilder getClinVarOrBuilder()

TODO: move to model or somewhere and then import here - this is also needed for output in results
 

.ClinVar clinVar = 3;

Specified by:

getClinVarOrBuilder in interface AlleleProto.AllelePropertiesOrBuilder

setUnknownFields

public final AlleleProto.AlleleProperties.Builder setUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields)

Specified by:

setUnknownFields in interface com.google.protobuf.Message.Builder

Overrides:

setUnknownFields in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>

mergeUnknownFields

public final AlleleProto.AlleleProperties.Builder mergeUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields)

Specified by:

mergeUnknownFields in interface com.google.protobuf.Message.Builder

Overrides:

mergeUnknownFields in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.AlleleProperties.Builder>