Class AlleleProto.ClinVar.Builder
java.lang.Object
com.google.protobuf.AbstractMessageLite.Builder
com.google.protobuf.AbstractMessage.Builder<BuilderType>
com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
org.monarchinitiative.exomiser.core.proto.AlleleProto.ClinVar.Builder
- All Implemented Interfaces:
com.google.protobuf.Message.Builder
,com.google.protobuf.MessageLite.Builder
,com.google.protobuf.MessageLiteOrBuilder
,com.google.protobuf.MessageOrBuilder
,Cloneable
,AlleleProto.ClinVarOrBuilder
- Enclosing class:
- AlleleProto.ClinVar
public static final class AlleleProto.ClinVar.Builder
extends com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
implements AlleleProto.ClinVarOrBuilder
Protobuf type
ClinVar
-
Method Summary
Modifier and TypeMethodDescriptionaddAllSecondaryInterpretations
(Iterable<? extends AlleleProto.ClinVar.ClinSig> values) repeated .ClinVar.ClinSig secondaryInterpretations = 3;
repeated .ClinVar.ClinSig secondaryInterpretations = 3;
addRepeatedField
(com.google.protobuf.Descriptors.FieldDescriptor field, Object value) repeated .ClinVar.ClinSig secondaryInterpretations = 3;
addSecondaryInterpretationsValue
(int value) repeated .ClinVar.ClinSig secondaryInterpretations = 3;
build()
clear()
Deprecated.clearField
(com.google.protobuf.Descriptors.FieldDescriptor field) string gene_id = 8;
string gene_symbol = 7;
string hgvs_cdna = 10;
string hgvs_protein = 11;
clearOneof
(com.google.protobuf.Descriptors.OneofDescriptor oneof) .ClinVar.ClinSig primaryInterpretation = 2;
.ClinVar.ReviewStatus reviewStatus = 4;
repeated .ClinVar.ClinSig secondaryInterpretations = 3;
.VariantEffect variant_effect = 9;
string variationId = 6;
clone()
boolean
CLNSIGCONFboolean
map<string, .ClinVar.ClinSig> includedAlleles = 5;
Deprecated.com.google.protobuf.ByteString
Deprecated.Deprecated.int
CLNSIGCONFCLNSIGCONFint
getClinSigCountsOrDefault
(String key, int defaultValue) CLNSIGCONFint
CLNSIGCONFstatic final com.google.protobuf.Descriptors.Descriptor
com.google.protobuf.Descriptors.Descriptor
string gene_id = 8;
com.google.protobuf.ByteString
string gene_id = 8;
string gene_symbol = 7;
com.google.protobuf.ByteString
string gene_symbol = 7;
string hgvs_cdna = 10;
com.google.protobuf.ByteString
string hgvs_cdna = 10;
string hgvs_protein = 11;
com.google.protobuf.ByteString
string hgvs_protein = 11;
Deprecated.int
map<string, .ClinVar.ClinSig> includedAlleles = 5;
map<string, .ClinVar.ClinSig> includedAlleles = 5;
getIncludedAllelesOrDefault
(String key, AlleleProto.ClinVar.ClinSig defaultValue) map<string, .ClinVar.ClinSig> includedAlleles = 5;
map<string, .ClinVar.ClinSig> includedAlleles = 5;
Deprecated.map<string, .ClinVar.ClinSig> includedAlleles = 5;
int
getIncludedAllelesValueOrDefault
(String key, int defaultValue) map<string, .ClinVar.ClinSig> includedAlleles = 5;
int
map<string, .ClinVar.ClinSig> includedAlleles = 5;
Deprecated.Deprecated.Deprecated..ClinVar.ClinSig primaryInterpretation = 2;
int
.ClinVar.ClinSig primaryInterpretation = 2;
.ClinVar.ReviewStatus reviewStatus = 4;
int
.ClinVar.ReviewStatus reviewStatus = 4;
getSecondaryInterpretations
(int index) repeated .ClinVar.ClinSig secondaryInterpretations = 3;
int
repeated .ClinVar.ClinSig secondaryInterpretations = 3;
repeated .ClinVar.ClinSig secondaryInterpretations = 3;
int
getSecondaryInterpretationsValue
(int index) repeated .ClinVar.ClinSig secondaryInterpretations = 3;
repeated .ClinVar.ClinSig secondaryInterpretations = 3;
.VariantEffect variant_effect = 9;
int
.VariantEffect variant_effect = 9;
string variationId = 6;
com.google.protobuf.ByteString
string variationId = 6;
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
protected com.google.protobuf.MapField
internalGetMapField
(int number) protected com.google.protobuf.MapField
internalGetMutableMapField
(int number) final boolean
mergeFrom
(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry) mergeFrom
(com.google.protobuf.Message other) mergeFrom
(AlleleProto.ClinVar other) mergeUnknownFields
(com.google.protobuf.UnknownFieldSet unknownFields) putAllClinSigCounts
(Map<String, Integer> values) CLNSIGCONFmap<string, .ClinVar.ClinSig> includedAlleles = 5;
putAllIncludedAllelesValue
(Map<String, Integer> values) map<string, .ClinVar.ClinSig> includedAlleles = 5;
putClinSigCounts
(String key, int value) CLNSIGCONFputIncludedAlleles
(String key, AlleleProto.ClinVar.ClinSig value) map<string, .ClinVar.ClinSig> includedAlleles = 5;
putIncludedAllelesValue
(String key, int value) map<string, .ClinVar.ClinSig> includedAlleles = 5;
CLNSIGCONFmap<string, .ClinVar.ClinSig> includedAlleles = 5;
setAlleleId
(String value) Deprecated.setAlleleIdBytes
(com.google.protobuf.ByteString value) Deprecated.string gene_id = 8;
setGeneIdBytes
(com.google.protobuf.ByteString value) string gene_id = 8;
setGeneSymbol
(String value) string gene_symbol = 7;
setGeneSymbolBytes
(com.google.protobuf.ByteString value) string gene_symbol = 7;
setHgvsCdna
(String value) string hgvs_cdna = 10;
setHgvsCdnaBytes
(com.google.protobuf.ByteString value) string hgvs_cdna = 10;
setHgvsProtein
(String value) string hgvs_protein = 11;
setHgvsProteinBytes
(com.google.protobuf.ByteString value) string hgvs_protein = 11;
.ClinVar.ClinSig primaryInterpretation = 2;
setPrimaryInterpretationValue
(int value) .ClinVar.ClinSig primaryInterpretation = 2;
setRepeatedField
(com.google.protobuf.Descriptors.FieldDescriptor field, int index, Object value) .ClinVar.ReviewStatus reviewStatus = 4;
setReviewStatusValue
(int value) .ClinVar.ReviewStatus reviewStatus = 4;
setSecondaryInterpretations
(int index, AlleleProto.ClinVar.ClinSig value) repeated .ClinVar.ClinSig secondaryInterpretations = 3;
setSecondaryInterpretationsValue
(int index, int value) repeated .ClinVar.ClinSig secondaryInterpretations = 3;
setUnknownFields
(com.google.protobuf.UnknownFieldSet unknownFields) .VariantEffect variant_effect = 9;
setVariantEffectValue
(int value) .VariantEffect variant_effect = 9;
setVariationId
(String value) string variationId = 6;
setVariationIdBytes
(com.google.protobuf.ByteString value) string variationId = 6;
Methods inherited from class com.google.protobuf.GeneratedMessageV3.Builder
getAllFields, getField, getFieldBuilder, getOneofFieldDescriptor, getParentForChildren, getRepeatedField, getRepeatedFieldBuilder, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof, isClean, markClean, newBuilderForField, onBuilt, onChanged, setUnknownFieldsProto3
Methods inherited from class com.google.protobuf.AbstractMessage.Builder
findInitializationErrors, getInitializationErrorString, internalMergeFrom, mergeDelimitedFrom, mergeDelimitedFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, newUninitializedMessageException, toString
Methods inherited from class com.google.protobuf.AbstractMessageLite.Builder
addAll, addAll, mergeFrom, newUninitializedMessageException
Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
Methods inherited from interface com.google.protobuf.MessageLite.Builder
mergeFrom
Methods inherited from interface com.google.protobuf.MessageOrBuilder
findInitializationErrors, getAllFields, getField, getInitializationErrorString, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof
-
Method Details
-
getDescriptor
public static final com.google.protobuf.Descriptors.Descriptor getDescriptor() -
internalGetMapField
protected com.google.protobuf.MapField internalGetMapField(int number) - Overrides:
internalGetMapField
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
-
internalGetMutableMapField
protected com.google.protobuf.MapField internalGetMutableMapField(int number) - Overrides:
internalGetMutableMapField
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
-
internalGetFieldAccessorTable
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable internalGetFieldAccessorTable()- Specified by:
internalGetFieldAccessorTable
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
-
clear
- Specified by:
clear
in interfacecom.google.protobuf.Message.Builder
- Specified by:
clear
in interfacecom.google.protobuf.MessageLite.Builder
- Overrides:
clear
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
-
getDescriptorForType
public com.google.protobuf.Descriptors.Descriptor getDescriptorForType()- Specified by:
getDescriptorForType
in interfacecom.google.protobuf.Message.Builder
- Specified by:
getDescriptorForType
in interfacecom.google.protobuf.MessageOrBuilder
- Overrides:
getDescriptorForType
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
-
getDefaultInstanceForType
- Specified by:
getDefaultInstanceForType
in interfacecom.google.protobuf.MessageLiteOrBuilder
- Specified by:
getDefaultInstanceForType
in interfacecom.google.protobuf.MessageOrBuilder
-
build
- Specified by:
build
in interfacecom.google.protobuf.Message.Builder
- Specified by:
build
in interfacecom.google.protobuf.MessageLite.Builder
-
buildPartial
- Specified by:
buildPartial
in interfacecom.google.protobuf.Message.Builder
- Specified by:
buildPartial
in interfacecom.google.protobuf.MessageLite.Builder
-
clone
- Specified by:
clone
in interfacecom.google.protobuf.Message.Builder
- Specified by:
clone
in interfacecom.google.protobuf.MessageLite.Builder
- Overrides:
clone
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
-
setField
public AlleleProto.ClinVar.Builder setField(com.google.protobuf.Descriptors.FieldDescriptor field, Object value) - Specified by:
setField
in interfacecom.google.protobuf.Message.Builder
- Overrides:
setField
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
-
clearField
public AlleleProto.ClinVar.Builder clearField(com.google.protobuf.Descriptors.FieldDescriptor field) - Specified by:
clearField
in interfacecom.google.protobuf.Message.Builder
- Overrides:
clearField
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
-
clearOneof
public AlleleProto.ClinVar.Builder clearOneof(com.google.protobuf.Descriptors.OneofDescriptor oneof) - Specified by:
clearOneof
in interfacecom.google.protobuf.Message.Builder
- Overrides:
clearOneof
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
-
setRepeatedField
public AlleleProto.ClinVar.Builder setRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field, int index, Object value) - Specified by:
setRepeatedField
in interfacecom.google.protobuf.Message.Builder
- Overrides:
setRepeatedField
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
-
addRepeatedField
public AlleleProto.ClinVar.Builder addRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field, Object value) - Specified by:
addRepeatedField
in interfacecom.google.protobuf.Message.Builder
- Overrides:
addRepeatedField
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
-
mergeFrom
- Specified by:
mergeFrom
in interfacecom.google.protobuf.Message.Builder
- Overrides:
mergeFrom
in classcom.google.protobuf.AbstractMessage.Builder<AlleleProto.ClinVar.Builder>
-
mergeFrom
-
isInitialized
public final boolean isInitialized()- Specified by:
isInitialized
in interfacecom.google.protobuf.MessageLiteOrBuilder
- Overrides:
isInitialized
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
-
mergeFrom
public AlleleProto.ClinVar.Builder mergeFrom(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry) throws IOException - Specified by:
mergeFrom
in interfacecom.google.protobuf.Message.Builder
- Specified by:
mergeFrom
in interfacecom.google.protobuf.MessageLite.Builder
- Overrides:
mergeFrom
in classcom.google.protobuf.AbstractMessage.Builder<AlleleProto.ClinVar.Builder>
- Throws:
IOException
-
getAlleleId
Deprecated.string alleleId = 1 [deprecated = true];
- Specified by:
getAlleleId
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The alleleId.
-
getAlleleIdBytes
Deprecated.string alleleId = 1 [deprecated = true];
- Specified by:
getAlleleIdBytes
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The bytes for alleleId.
-
setAlleleId
Deprecated.string alleleId = 1 [deprecated = true];
- Parameters:
value
- The alleleId to set.- Returns:
- This builder for chaining.
-
clearAlleleId
Deprecated.string alleleId = 1 [deprecated = true];
- Returns:
- This builder for chaining.
-
setAlleleIdBytes
@Deprecated public AlleleProto.ClinVar.Builder setAlleleIdBytes(com.google.protobuf.ByteString value) Deprecated.string alleleId = 1 [deprecated = true];
- Parameters:
value
- The bytes for alleleId to set.- Returns:
- This builder for chaining.
-
getPrimaryInterpretationValue
public int getPrimaryInterpretationValue().ClinVar.ClinSig primaryInterpretation = 2;
- Specified by:
getPrimaryInterpretationValue
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The enum numeric value on the wire for primaryInterpretation.
-
setPrimaryInterpretationValue
.ClinVar.ClinSig primaryInterpretation = 2;
- Parameters:
value
- The enum numeric value on the wire for primaryInterpretation to set.- Returns:
- This builder for chaining.
-
getPrimaryInterpretation
.ClinVar.ClinSig primaryInterpretation = 2;
- Specified by:
getPrimaryInterpretation
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The primaryInterpretation.
-
setPrimaryInterpretation
.ClinVar.ClinSig primaryInterpretation = 2;
- Parameters:
value
- The primaryInterpretation to set.- Returns:
- This builder for chaining.
-
clearPrimaryInterpretation
.ClinVar.ClinSig primaryInterpretation = 2;
- Returns:
- This builder for chaining.
-
getSecondaryInterpretationsList
repeated .ClinVar.ClinSig secondaryInterpretations = 3;
- Specified by:
getSecondaryInterpretationsList
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- A list containing the secondaryInterpretations.
-
getSecondaryInterpretationsCount
public int getSecondaryInterpretationsCount()repeated .ClinVar.ClinSig secondaryInterpretations = 3;
- Specified by:
getSecondaryInterpretationsCount
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The count of secondaryInterpretations.
-
getSecondaryInterpretations
repeated .ClinVar.ClinSig secondaryInterpretations = 3;
- Specified by:
getSecondaryInterpretations
in interfaceAlleleProto.ClinVarOrBuilder
- Parameters:
index
- The index of the element to return.- Returns:
- The secondaryInterpretations at the given index.
-
setSecondaryInterpretations
public AlleleProto.ClinVar.Builder setSecondaryInterpretations(int index, AlleleProto.ClinVar.ClinSig value) repeated .ClinVar.ClinSig secondaryInterpretations = 3;
- Parameters:
index
- The index to set the value at.value
- The secondaryInterpretations to set.- Returns:
- This builder for chaining.
-
addSecondaryInterpretations
repeated .ClinVar.ClinSig secondaryInterpretations = 3;
- Parameters:
value
- The secondaryInterpretations to add.- Returns:
- This builder for chaining.
-
addAllSecondaryInterpretations
public AlleleProto.ClinVar.Builder addAllSecondaryInterpretations(Iterable<? extends AlleleProto.ClinVar.ClinSig> values) repeated .ClinVar.ClinSig secondaryInterpretations = 3;
- Parameters:
values
- The secondaryInterpretations to add.- Returns:
- This builder for chaining.
-
clearSecondaryInterpretations
repeated .ClinVar.ClinSig secondaryInterpretations = 3;
- Returns:
- This builder for chaining.
-
getSecondaryInterpretationsValueList
repeated .ClinVar.ClinSig secondaryInterpretations = 3;
- Specified by:
getSecondaryInterpretationsValueList
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- A list containing the enum numeric values on the wire for secondaryInterpretations.
-
getSecondaryInterpretationsValue
public int getSecondaryInterpretationsValue(int index) repeated .ClinVar.ClinSig secondaryInterpretations = 3;
- Specified by:
getSecondaryInterpretationsValue
in interfaceAlleleProto.ClinVarOrBuilder
- Parameters:
index
- The index of the value to return.- Returns:
- The enum numeric value on the wire of secondaryInterpretations at the given index.
-
setSecondaryInterpretationsValue
repeated .ClinVar.ClinSig secondaryInterpretations = 3;
- Parameters:
index
- The index of the value to return.- Returns:
- The enum numeric value on the wire of secondaryInterpretations at the given index.
-
addSecondaryInterpretationsValue
repeated .ClinVar.ClinSig secondaryInterpretations = 3;
- Parameters:
value
- The enum numeric value on the wire for secondaryInterpretations to add.- Returns:
- This builder for chaining.
-
addAllSecondaryInterpretationsValue
repeated .ClinVar.ClinSig secondaryInterpretations = 3;
- Parameters:
values
- The enum numeric values on the wire for secondaryInterpretations to add.- Returns:
- This builder for chaining.
-
getReviewStatusValue
public int getReviewStatusValue().ClinVar.ReviewStatus reviewStatus = 4;
- Specified by:
getReviewStatusValue
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The enum numeric value on the wire for reviewStatus.
-
setReviewStatusValue
.ClinVar.ReviewStatus reviewStatus = 4;
- Parameters:
value
- The enum numeric value on the wire for reviewStatus to set.- Returns:
- This builder for chaining.
-
getReviewStatus
.ClinVar.ReviewStatus reviewStatus = 4;
- Specified by:
getReviewStatus
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The reviewStatus.
-
setReviewStatus
.ClinVar.ReviewStatus reviewStatus = 4;
- Parameters:
value
- The reviewStatus to set.- Returns:
- This builder for chaining.
-
clearReviewStatus
.ClinVar.ReviewStatus reviewStatus = 4;
- Returns:
- This builder for chaining.
-
getIncludedAllelesCount
public int getIncludedAllelesCount()Description copied from interface:AlleleProto.ClinVarOrBuilder
map<string, .ClinVar.ClinSig> includedAlleles = 5;
- Specified by:
getIncludedAllelesCount
in interfaceAlleleProto.ClinVarOrBuilder
-
containsIncludedAlleles
map<string, .ClinVar.ClinSig> includedAlleles = 5;
- Specified by:
containsIncludedAlleles
in interfaceAlleleProto.ClinVarOrBuilder
-
getIncludedAlleles
Deprecated.UsegetIncludedAllelesMap()
instead.- Specified by:
getIncludedAlleles
in interfaceAlleleProto.ClinVarOrBuilder
-
getIncludedAllelesMap
map<string, .ClinVar.ClinSig> includedAlleles = 5;
- Specified by:
getIncludedAllelesMap
in interfaceAlleleProto.ClinVarOrBuilder
-
getIncludedAllelesOrDefault
public AlleleProto.ClinVar.ClinSig getIncludedAllelesOrDefault(String key, AlleleProto.ClinVar.ClinSig defaultValue) map<string, .ClinVar.ClinSig> includedAlleles = 5;
- Specified by:
getIncludedAllelesOrDefault
in interfaceAlleleProto.ClinVarOrBuilder
-
getIncludedAllelesOrThrow
map<string, .ClinVar.ClinSig> includedAlleles = 5;
- Specified by:
getIncludedAllelesOrThrow
in interfaceAlleleProto.ClinVarOrBuilder
-
getIncludedAllelesValue
Deprecated.UsegetIncludedAllelesValueMap()
instead.- Specified by:
getIncludedAllelesValue
in interfaceAlleleProto.ClinVarOrBuilder
-
getIncludedAllelesValueMap
map<string, .ClinVar.ClinSig> includedAlleles = 5;
- Specified by:
getIncludedAllelesValueMap
in interfaceAlleleProto.ClinVarOrBuilder
-
getIncludedAllelesValueOrDefault
map<string, .ClinVar.ClinSig> includedAlleles = 5;
- Specified by:
getIncludedAllelesValueOrDefault
in interfaceAlleleProto.ClinVarOrBuilder
-
getIncludedAllelesValueOrThrow
map<string, .ClinVar.ClinSig> includedAlleles = 5;
- Specified by:
getIncludedAllelesValueOrThrow
in interfaceAlleleProto.ClinVarOrBuilder
-
clearIncludedAlleles
-
removeIncludedAlleles
map<string, .ClinVar.ClinSig> includedAlleles = 5;
-
getMutableIncludedAlleles
Deprecated.Use alternate mutation accessors instead. -
putIncludedAlleles
public AlleleProto.ClinVar.Builder putIncludedAlleles(String key, AlleleProto.ClinVar.ClinSig value) map<string, .ClinVar.ClinSig> includedAlleles = 5;
-
putAllIncludedAlleles
public AlleleProto.ClinVar.Builder putAllIncludedAlleles(Map<String, AlleleProto.ClinVar.ClinSig> values) map<string, .ClinVar.ClinSig> includedAlleles = 5;
-
getMutableIncludedAllelesValue
Deprecated.Use alternate mutation accessors instead. -
putIncludedAllelesValue
map<string, .ClinVar.ClinSig> includedAlleles = 5;
-
putAllIncludedAllelesValue
map<string, .ClinVar.ClinSig> includedAlleles = 5;
-
getVariationId
string variationId = 6;
- Specified by:
getVariationId
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The variationId.
-
getVariationIdBytes
public com.google.protobuf.ByteString getVariationIdBytes()string variationId = 6;
- Specified by:
getVariationIdBytes
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The bytes for variationId.
-
setVariationId
string variationId = 6;
- Parameters:
value
- The variationId to set.- Returns:
- This builder for chaining.
-
clearVariationId
string variationId = 6;
- Returns:
- This builder for chaining.
-
setVariationIdBytes
string variationId = 6;
- Parameters:
value
- The bytes for variationId to set.- Returns:
- This builder for chaining.
-
getGeneSymbol
string gene_symbol = 7;
- Specified by:
getGeneSymbol
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The geneSymbol.
-
getGeneSymbolBytes
public com.google.protobuf.ByteString getGeneSymbolBytes()string gene_symbol = 7;
- Specified by:
getGeneSymbolBytes
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The bytes for geneSymbol.
-
setGeneSymbol
string gene_symbol = 7;
- Parameters:
value
- The geneSymbol to set.- Returns:
- This builder for chaining.
-
clearGeneSymbol
string gene_symbol = 7;
- Returns:
- This builder for chaining.
-
setGeneSymbolBytes
string gene_symbol = 7;
- Parameters:
value
- The bytes for geneSymbol to set.- Returns:
- This builder for chaining.
-
getGeneId
string gene_id = 8;
- Specified by:
getGeneId
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The geneId.
-
getGeneIdBytes
public com.google.protobuf.ByteString getGeneIdBytes()string gene_id = 8;
- Specified by:
getGeneIdBytes
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The bytes for geneId.
-
setGeneId
string gene_id = 8;
- Parameters:
value
- The geneId to set.- Returns:
- This builder for chaining.
-
clearGeneId
string gene_id = 8;
- Returns:
- This builder for chaining.
-
setGeneIdBytes
string gene_id = 8;
- Parameters:
value
- The bytes for geneId to set.- Returns:
- This builder for chaining.
-
getVariantEffectValue
public int getVariantEffectValue().VariantEffect variant_effect = 9;
- Specified by:
getVariantEffectValue
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The enum numeric value on the wire for variantEffect.
-
setVariantEffectValue
.VariantEffect variant_effect = 9;
- Parameters:
value
- The enum numeric value on the wire for variantEffect to set.- Returns:
- This builder for chaining.
-
getVariantEffect
.VariantEffect variant_effect = 9;
- Specified by:
getVariantEffect
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The variantEffect.
-
setVariantEffect
.VariantEffect variant_effect = 9;
- Parameters:
value
- The variantEffect to set.- Returns:
- This builder for chaining.
-
clearVariantEffect
.VariantEffect variant_effect = 9;
- Returns:
- This builder for chaining.
-
getHgvsCdna
string hgvs_cdna = 10;
- Specified by:
getHgvsCdna
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The hgvsCdna.
-
getHgvsCdnaBytes
public com.google.protobuf.ByteString getHgvsCdnaBytes()string hgvs_cdna = 10;
- Specified by:
getHgvsCdnaBytes
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The bytes for hgvsCdna.
-
setHgvsCdna
string hgvs_cdna = 10;
- Parameters:
value
- The hgvsCdna to set.- Returns:
- This builder for chaining.
-
clearHgvsCdna
string hgvs_cdna = 10;
- Returns:
- This builder for chaining.
-
setHgvsCdnaBytes
string hgvs_cdna = 10;
- Parameters:
value
- The bytes for hgvsCdna to set.- Returns:
- This builder for chaining.
-
getHgvsProtein
string hgvs_protein = 11;
- Specified by:
getHgvsProtein
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The hgvsProtein.
-
getHgvsProteinBytes
public com.google.protobuf.ByteString getHgvsProteinBytes()string hgvs_protein = 11;
- Specified by:
getHgvsProteinBytes
in interfaceAlleleProto.ClinVarOrBuilder
- Returns:
- The bytes for hgvsProtein.
-
setHgvsProtein
string hgvs_protein = 11;
- Parameters:
value
- The hgvsProtein to set.- Returns:
- This builder for chaining.
-
clearHgvsProtein
string hgvs_protein = 11;
- Returns:
- This builder for chaining.
-
setHgvsProteinBytes
string hgvs_protein = 11;
- Parameters:
value
- The bytes for hgvsProtein to set.- Returns:
- This builder for chaining.
-
getClinSigCountsCount
public int getClinSigCountsCount()Description copied from interface:AlleleProto.ClinVarOrBuilder
CLNSIGCONF
map<string, uint32> clin_sig_counts = 12;
- Specified by:
getClinSigCountsCount
in interfaceAlleleProto.ClinVarOrBuilder
-
containsClinSigCounts
CLNSIGCONF
map<string, uint32> clin_sig_counts = 12;
- Specified by:
containsClinSigCounts
in interfaceAlleleProto.ClinVarOrBuilder
-
getClinSigCounts
Deprecated.UsegetClinSigCountsMap()
instead.- Specified by:
getClinSigCounts
in interfaceAlleleProto.ClinVarOrBuilder
-
getClinSigCountsMap
CLNSIGCONF
map<string, uint32> clin_sig_counts = 12;
- Specified by:
getClinSigCountsMap
in interfaceAlleleProto.ClinVarOrBuilder
-
getClinSigCountsOrDefault
CLNSIGCONF
map<string, uint32> clin_sig_counts = 12;
- Specified by:
getClinSigCountsOrDefault
in interfaceAlleleProto.ClinVarOrBuilder
-
getClinSigCountsOrThrow
CLNSIGCONF
map<string, uint32> clin_sig_counts = 12;
- Specified by:
getClinSigCountsOrThrow
in interfaceAlleleProto.ClinVarOrBuilder
-
clearClinSigCounts
-
removeClinSigCounts
CLNSIGCONF
map<string, uint32> clin_sig_counts = 12;
-
getMutableClinSigCounts
Deprecated.Use alternate mutation accessors instead. -
putClinSigCounts
CLNSIGCONF
map<string, uint32> clin_sig_counts = 12;
-
putAllClinSigCounts
CLNSIGCONF
map<string, uint32> clin_sig_counts = 12;
-
setUnknownFields
public final AlleleProto.ClinVar.Builder setUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields) - Specified by:
setUnknownFields
in interfacecom.google.protobuf.Message.Builder
- Overrides:
setUnknownFields
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
-
mergeUnknownFields
public final AlleleProto.ClinVar.Builder mergeUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields) - Specified by:
mergeUnknownFields
in interfacecom.google.protobuf.Message.Builder
- Overrides:
mergeUnknownFields
in classcom.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
-