Package org.monarchinitiative.exomiser.core.proto

Enum Class AlleleProto.VariantEffect

java.lang.Object
java.lang.Enum<AlleleProto.VariantEffect>
org.monarchinitiative.exomiser.core.proto.AlleleProto.VariantEffect
All Implemented Interfaces:
com.google.protobuf.Internal.EnumLite, com.google.protobuf.ProtocolMessageEnum, Serializable, Comparable<AlleleProto.VariantEffect>, Constable
Enclosing class:
AlleleProto
public static enum AlleleProto.VariantEffect extends Enum<AlleleProto.VariantEffect> implements com.google.protobuf.ProtocolMessageEnum
Protobuf enum VariantEffect

  • Enum Constant Details

  • Field Details

    • SEQUENCE_VARIANT_VALUE

      public static final int SEQUENCE_VARIANT_VALUE
       n.b. this is the LOWEST value in the jannovar enum
      SEQUENCE_VARIANT = 0;
      See Also:

    • CHROMOSOME_NUMBER_VARIATION_VALUE

      public static final int CHROMOSOME_NUMBER_VARIATION_VALUE
      CHROMOSOME_NUMBER_VARIATION = 1;
      See Also:

    • TRANSCRIPT_ABLATION_VALUE

      public static final int TRANSCRIPT_ABLATION_VALUE
      TRANSCRIPT_ABLATION = 2;
      See Also:

    • EXON_LOSS_VARIANT_VALUE

      public static final int EXON_LOSS_VARIANT_VALUE
      EXON_LOSS_VARIANT = 3;
      See Also:

    • INVERSION_VALUE

      public static final int INVERSION_VALUE
      INVERSION = 4;
      See Also:

    • INSERTION_VALUE

      public static final int INSERTION_VALUE
      INSERTION = 5;
      See Also:

    • TRANSLOCATION_VALUE

      public static final int TRANSLOCATION_VALUE
      TRANSLOCATION = 6;
      See Also:

    • FRAMESHIFT_ELONGATION_VALUE

      public static final int FRAMESHIFT_ELONGATION_VALUE
      FRAMESHIFT_ELONGATION = 7;
      See Also:

    • FRAMESHIFT_TRUNCATION_VALUE

      public static final int FRAMESHIFT_TRUNCATION_VALUE
      FRAMESHIFT_TRUNCATION = 8;
      See Also:

    • FRAMESHIFT_VARIANT_VALUE

      public static final int FRAMESHIFT_VARIANT_VALUE
      FRAMESHIFT_VARIANT = 9;
      See Also:

    • INTERNAL_FEATURE_ELONGATION_VALUE

      public static final int INTERNAL_FEATURE_ELONGATION_VALUE
      INTERNAL_FEATURE_ELONGATION = 10;
      See Also:

    • FEATURE_TRUNCATION_VALUE

      public static final int FEATURE_TRUNCATION_VALUE
      FEATURE_TRUNCATION = 11;
      See Also:

    • TRANSCRIPT_AMPLIFICATION_VALUE

      public static final int TRANSCRIPT_AMPLIFICATION_VALUE
      TRANSCRIPT_AMPLIFICATION = 12;
      See Also:

    • COPY_NUMBER_CHANGE_VALUE

      public static final int COPY_NUMBER_CHANGE_VALUE
      COPY_NUMBER_CHANGE = 13;
      See Also:

    • MNV_VALUE

      public static final int MNV_VALUE
      MNV = 14;
      See Also:

    • COMPLEX_SUBSTITUTION_VALUE

      public static final int COMPLEX_SUBSTITUTION_VALUE
      COMPLEX_SUBSTITUTION = 15;
      See Also:

    • STOP_GAINED_VALUE

      public static final int STOP_GAINED_VALUE
      STOP_GAINED = 16;
      See Also:

    • STOP_LOST_VALUE

      public static final int STOP_LOST_VALUE
      STOP_LOST = 17;
      See Also:

    • START_LOST_VALUE

      public static final int START_LOST_VALUE
      START_LOST = 18;
      See Also:

    • SPLICE_ACCEPTOR_VARIANT_VALUE

      public static final int SPLICE_ACCEPTOR_VARIANT_VALUE
      SPLICE_ACCEPTOR_VARIANT = 19;
      See Also:

    • SPLICE_DONOR_VARIANT_VALUE

      public static final int SPLICE_DONOR_VARIANT_VALUE
      SPLICE_DONOR_VARIANT = 20;
      See Also:

    • RARE_AMINO_ACID_VARIANT_VALUE

      public static final int RARE_AMINO_ACID_VARIANT_VALUE
      RARE_AMINO_ACID_VARIANT = 21;
      See Also:

    • MISSENSE_VARIANT_VALUE

      public static final int MISSENSE_VARIANT_VALUE
      MISSENSE_VARIANT = 22;
      See Also:

    • INFRAME_INSERTION_VALUE

      public static final int INFRAME_INSERTION_VALUE
      INFRAME_INSERTION = 23;
      See Also:

    • DISRUPTIVE_INFRAME_INSERTION_VALUE

      public static final int DISRUPTIVE_INFRAME_INSERTION_VALUE
      DISRUPTIVE_INFRAME_INSERTION = 24;
      See Also:

    • INFRAME_DELETION_VALUE

      public static final int INFRAME_DELETION_VALUE
      INFRAME_DELETION = 25;
      See Also:

    • DISRUPTIVE_INFRAME_DELETION_VALUE

      public static final int DISRUPTIVE_INFRAME_DELETION_VALUE
      DISRUPTIVE_INFRAME_DELETION = 26;
      See Also:

    • FIVE_PRIME_UTR_TRUNCATION_VALUE

      public static final int FIVE_PRIME_UTR_TRUNCATION_VALUE
      FIVE_PRIME_UTR_TRUNCATION = 27;
      See Also:

    • THREE_PRIME_UTR_TRUNCATION_VALUE

      public static final int THREE_PRIME_UTR_TRUNCATION_VALUE
      THREE_PRIME_UTR_TRUNCATION = 28;
      See Also:

    • SPLICE_REGION_VARIANT_VALUE

      public static final int SPLICE_REGION_VARIANT_VALUE
      SPLICE_REGION_VARIANT = 30;
      See Also:

    • STOP_RETAINED_VARIANT_VALUE

      public static final int STOP_RETAINED_VARIANT_VALUE
      STOP_RETAINED_VARIANT = 31;
      See Also:

    • INITIATOR_CODON_VARIANT_VALUE

      public static final int INITIATOR_CODON_VARIANT_VALUE
      INITIATOR_CODON_VARIANT = 32;
      See Also:

    • SYNONYMOUS_VARIANT_VALUE

      public static final int SYNONYMOUS_VARIANT_VALUE
      SYNONYMOUS_VARIANT = 33;
      See Also:

    • CODING_TRANSCRIPT_INTRON_VARIANT_VALUE

      public static final int CODING_TRANSCRIPT_INTRON_VARIANT_VALUE
      CODING_TRANSCRIPT_INTRON_VARIANT = 34;
      See Also:

    • FIVE_PRIME_UTR_PREMATURE_START_CODON_GAIN_VARIANT_VALUE

      public static final int FIVE_PRIME_UTR_PREMATURE_START_CODON_GAIN_VARIANT_VALUE
      FIVE_PRIME_UTR_PREMATURE_START_CODON_GAIN_VARIANT = 35;
      See Also:

    • FIVE_PRIME_UTR_EXON_VARIANT_VALUE

      public static final int FIVE_PRIME_UTR_EXON_VARIANT_VALUE
      FIVE_PRIME_UTR_EXON_VARIANT = 36;
      See Also:

    • THREE_PRIME_UTR_EXON_VARIANT_VALUE

      public static final int THREE_PRIME_UTR_EXON_VARIANT_VALUE
      THREE_PRIME_UTR_EXON_VARIANT = 37;
      See Also:

    • FIVE_PRIME_UTR_INTRON_VARIANT_VALUE

      public static final int FIVE_PRIME_UTR_INTRON_VARIANT_VALUE
      FIVE_PRIME_UTR_INTRON_VARIANT = 38;
      See Also:

    • THREE_PRIME_UTR_INTRON_VARIANT_VALUE

      public static final int THREE_PRIME_UTR_INTRON_VARIANT_VALUE
      THREE_PRIME_UTR_INTRON_VARIANT = 39;
      See Also:

    • NON_CODING_TRANSCRIPT_EXON_VARIANT_VALUE

      public static final int NON_CODING_TRANSCRIPT_EXON_VARIANT_VALUE
      NON_CODING_TRANSCRIPT_EXON_VARIANT = 40;
      See Also:

    • NON_CODING_TRANSCRIPT_INTRON_VARIANT_VALUE

      public static final int NON_CODING_TRANSCRIPT_INTRON_VARIANT_VALUE
      NON_CODING_TRANSCRIPT_INTRON_VARIANT = 41;
      See Also:

    • DIRECT_TANDEM_DUPLICATION_VALUE

      public static final int DIRECT_TANDEM_DUPLICATION_VALUE
      DIRECT_TANDEM_DUPLICATION = 42;
      See Also:

    • MOBILE_ELEMENT_DELETION_VALUE

      public static final int MOBILE_ELEMENT_DELETION_VALUE
      MOBILE_ELEMENT_DELETION = 43;
      See Also:

    • MOBILE_ELEMENT_INSERTION_VALUE

      public static final int MOBILE_ELEMENT_INSERTION_VALUE
      MOBILE_ELEMENT_INSERTION = 44;
      See Also:

    • UPSTREAM_GENE_VARIANT_VALUE

      public static final int UPSTREAM_GENE_VARIANT_VALUE
      UPSTREAM_GENE_VARIANT = 45;
      See Also:

    • DOWNSTREAM_GENE_VARIANT_VALUE

      public static final int DOWNSTREAM_GENE_VARIANT_VALUE
      DOWNSTREAM_GENE_VARIANT = 46;
      See Also:

    • INTERGENIC_VARIANT_VALUE

      public static final int INTERGENIC_VARIANT_VALUE
      INTERGENIC_VARIANT = 47;
      See Also:

    • TFBS_ABLATION_VALUE

      public static final int TFBS_ABLATION_VALUE
      TFBS_ABLATION = 48;
      See Also:

    • TFBS_AMPLIFICATION_VALUE

      public static final int TFBS_AMPLIFICATION_VALUE
      TFBS_AMPLIFICATION = 49;
      See Also:

    • TF_BINDING_SITE_VARIANT_VALUE

      public static final int TF_BINDING_SITE_VARIANT_VALUE
      TF_BINDING_SITE_VARIANT = 50;
      See Also:

    • REGULATORY_REGION_VARIANT_VALUE

      public static final int REGULATORY_REGION_VARIANT_VALUE
      REGULATORY_REGION_VARIANT = 51;
      See Also:

    • REGULATORY_REGION_ABLATION_VALUE

      public static final int REGULATORY_REGION_ABLATION_VALUE
      REGULATORY_REGION_ABLATION = 52;
      See Also:

    • REGULATORY_REGION_AMPLIFICATION_VALUE

      public static final int REGULATORY_REGION_AMPLIFICATION_VALUE
      REGULATORY_REGION_AMPLIFICATION = 53;
      See Also:

    • CONSERVED_INTRON_VARIANT_VALUE

      public static final int CONSERVED_INTRON_VARIANT_VALUE
      CONSERVED_INTRON_VARIANT = 54;
      See Also:

    • INTRAGENIC_VARIANT_VALUE

      public static final int INTRAGENIC_VARIANT_VALUE
      INTRAGENIC_VARIANT = 55;
      See Also:

    • CONSERVED_INTERGENIC_VARIANT_VALUE

      public static final int CONSERVED_INTERGENIC_VARIANT_VALUE
      CONSERVED_INTERGENIC_VARIANT = 56;
      See Also:

    • STRUCTURAL_VARIANT_VALUE

      public static final int STRUCTURAL_VARIANT_VALUE
      STRUCTURAL_VARIANT = 57;
      See Also:

    • CODING_SEQUENCE_VARIANT_VALUE

      public static final int CODING_SEQUENCE_VARIANT_VALUE
      CODING_SEQUENCE_VARIANT = 58;
      See Also:

    • INTRON_VARIANT_VALUE

      public static final int INTRON_VARIANT_VALUE
      INTRON_VARIANT = 59;
      See Also:

    • EXON_VARIANT_VALUE

      public static final int EXON_VARIANT_VALUE
      EXON_VARIANT = 60;
      See Also:

    • SPLICING_VARIANT_VALUE

      public static final int SPLICING_VARIANT_VALUE
      SPLICING_VARIANT = 61;
      See Also:

    • MIRNA_VALUE

      public static final int MIRNA_VALUE
      MIRNA = 62;
      See Also:

    • CODING_TRANSCRIPT_VARIANT_VALUE

      public static final int CODING_TRANSCRIPT_VARIANT_VALUE
      CODING_TRANSCRIPT_VARIANT = 63;
      See Also:

    • NON_CODING_TRANSCRIPT_VARIANT_VALUE

      public static final int NON_CODING_TRANSCRIPT_VARIANT_VALUE
      NON_CODING_TRANSCRIPT_VARIANT = 64;
      See Also:

  • Method Details

    • values

      public static AlleleProto.VariantEffect[] values()
      Returns an array containing the constants of this enum class, in the order they are declared.
      Returns:
      an array containing the constants of this enum class, in the order they are declared

    • valueOf

      public static AlleleProto.VariantEffect valueOf(String name)
      Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)
      Parameters:
      name - the name of the enum constant to be returned.
      Returns:
      the enum constant with the specified name
      Throws:
      IllegalArgumentException - if this enum class has no constant with the specified name
      NullPointerException - if the argument is null

    • getNumber

      public final int getNumber()
      Specified by:
      getNumber in interface com.google.protobuf.Internal.EnumLite
      Specified by:
      getNumber in interface com.google.protobuf.ProtocolMessageEnum

    • valueOf

      @Deprecated public static AlleleProto.VariantEffect valueOf(int value)
      Deprecated.
      Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)
      Parameters:
      value - the name of the enum constant to be returned.
      Returns:
      the enum constant with the specified name
      Throws:
      IllegalArgumentException - if this enum class has no constant with the specified name
      NullPointerException - if the argument is null

    • forNumber

      public static AlleleProto.VariantEffect forNumber(int value)
      Parameters:
      value - The numeric wire value of the corresponding enum entry.
      Returns:
      The enum associated with the given numeric wire value.

    • internalGetValueMap

      public static com.google.protobuf.Internal.EnumLiteMap<AlleleProto.VariantEffect> internalGetValueMap()

    • getValueDescriptor

      public final com.google.protobuf.Descriptors.EnumValueDescriptor getValueDescriptor()
      Specified by:
      getValueDescriptor in interface com.google.protobuf.ProtocolMessageEnum

    • getDescriptorForType

      public final com.google.protobuf.Descriptors.EnumDescriptor getDescriptorForType()
      Specified by:
      getDescriptorForType in interface com.google.protobuf.ProtocolMessageEnum

    • getDescriptor

      public static final com.google.protobuf.Descriptors.EnumDescriptor getDescriptor()

    • valueOf

      public static AlleleProto.VariantEffect valueOf(com.google.protobuf.Descriptors.EnumValueDescriptor desc)
      Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)
      Parameters:
      desc - the name of the enum constant to be returned.
      Returns:
      the enum constant with the specified name
      Throws:
      IllegalArgumentException - if this enum class has no constant with the specified name
      NullPointerException - if the argument is null