Package org.monarchinitiative.exomiser.core.proto

Enum Class AlleleProto.PathogenicitySource

java.lang.Object
java.lang.Enum<AlleleProto.PathogenicitySource>
org.monarchinitiative.exomiser.core.proto.AlleleProto.PathogenicitySource
All Implemented Interfaces:
com.google.protobuf.Internal.EnumLite, com.google.protobuf.ProtocolMessageEnum, Serializable, Comparable<AlleleProto.PathogenicitySource>, Constable
Enclosing class:
AlleleProto
public static enum AlleleProto.PathogenicitySource extends Enum<AlleleProto.PathogenicitySource> implements com.google.protobuf.ProtocolMessageEnum
Protobuf enum PathogenicitySource

  • Enum Constant Details

  • Field Details

    • UNKNOWN_PATH_SOURCE_VALUE

      public static final int UNKNOWN_PATH_SOURCE_VALUE
      UNKNOWN_PATH_SOURCE = 0;
      See Also:

    • VARIANT_EFFECT_VALUE

      public static final int VARIANT_EFFECT_VALUE
       A default score derived from the predicted variant effect
      VARIANT_EFFECT = 1;
      See Also:

    • TEST_VALUE

      public static final int TEST_VALUE
       An unspecified source for use in testing new pathogenicity scores
      TEST = 2;
      See Also:

    • POLYPHEN_VALUE

      public static final int POLYPHEN_VALUE
      POLYPHEN = 3;
      See Also:

    • MUTATION_TASTER_VALUE

      public static final int MUTATION_TASTER_VALUE
      MUTATION_TASTER = 4;
      See Also:

    • SIFT_VALUE

      public static final int SIFT_VALUE
      SIFT = 5;
      See Also:

    • CADD_VALUE

      public static final int CADD_VALUE
      CADD = 6;
      See Also:

    • REMM_VALUE

      public static final int REMM_VALUE
      REMM = 7;
      See Also:

    • REVEL_VALUE

      public static final int REVEL_VALUE
      REVEL = 8;
      See Also:

    • MVP_VALUE

      public static final int MVP_VALUE
      MVP = 9;
      See Also:

    • SPLICE_AI_VALUE

      public static final int SPLICE_AI_VALUE
      SPLICE_AI = 10;
      See Also:

    • ALPHA_MISSENSE_VALUE

      public static final int ALPHA_MISSENSE_VALUE
      ALPHA_MISSENSE = 11;
      See Also:

    • EVE_VALUE

      public static final int EVE_VALUE
      EVE = 12;
      See Also:

    • DBVAR_VALUE

      public static final int DBVAR_VALUE
       SV data sources
      DBVAR = 14;
      See Also:

    • CLINVAR_VALUE

      public static final int CLINVAR_VALUE
      CLINVAR = 15;
      See Also:

  • Method Details

    • values

      public static AlleleProto.PathogenicitySource[] values()
      Returns an array containing the constants of this enum class, in the order they are declared.
      Returns:
      an array containing the constants of this enum class, in the order they are declared

    • valueOf

      public static AlleleProto.PathogenicitySource valueOf(String name)
      Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)
      Parameters:
      name - the name of the enum constant to be returned.
      Returns:
      the enum constant with the specified name
      Throws:
      IllegalArgumentException - if this enum class has no constant with the specified name
      NullPointerException - if the argument is null

    • getNumber

      public final int getNumber()
      Specified by:
      getNumber in interface com.google.protobuf.Internal.EnumLite
      Specified by:
      getNumber in interface com.google.protobuf.ProtocolMessageEnum

    • valueOf

      @Deprecated public static AlleleProto.PathogenicitySource valueOf(int value)
      Deprecated.
      Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)
      Parameters:
      value - the name of the enum constant to be returned.
      Returns:
      the enum constant with the specified name
      Throws:
      IllegalArgumentException - if this enum class has no constant with the specified name
      NullPointerException - if the argument is null

    • forNumber

      public static AlleleProto.PathogenicitySource forNumber(int value)
      Parameters:
      value - The numeric wire value of the corresponding enum entry.
      Returns:
      The enum associated with the given numeric wire value.

    • internalGetValueMap

      public static com.google.protobuf.Internal.EnumLiteMap<AlleleProto.PathogenicitySource> internalGetValueMap()

    • getValueDescriptor

      public final com.google.protobuf.Descriptors.EnumValueDescriptor getValueDescriptor()
      Specified by:
      getValueDescriptor in interface com.google.protobuf.ProtocolMessageEnum

    • getDescriptorForType

      public final com.google.protobuf.Descriptors.EnumDescriptor getDescriptorForType()
      Specified by:
      getDescriptorForType in interface com.google.protobuf.ProtocolMessageEnum

    • getDescriptor

      public static final com.google.protobuf.Descriptors.EnumDescriptor getDescriptor()

    • valueOf

      public static AlleleProto.PathogenicitySource valueOf(com.google.protobuf.Descriptors.EnumValueDescriptor desc)
      Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)
      Parameters:
      desc - the name of the enum constant to be returned.
      Returns:
      the enum constant with the specified name
      Throws:
      IllegalArgumentException - if this enum class has no constant with the specified name
      NullPointerException - if the argument is null