Package org.monarchinitiative.lirical.cli.cmd

Class OutputCommand.Output

java.lang.Object

org.monarchinitiative.lirical.cli.cmd.OutputCommand.Output

Enclosing class:

OutputCommand

public static class OutputCommand.Output
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
boolean	displayAllVariants
Double	lrThreshold
Integer	minDifferentialsToShow
Path	outdir
String	outfilePrefix	Prefix of the output file.
Set<OutputFormat>	outputFormats

Constructor Summary

Constructors

Constructor	Description
Output()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

outdir

public Path outdir

outputFormats

public Set<OutputFormat> outputFormats

outfilePrefix

public String outfilePrefix

Prefix of the output file. For instance, if the user enters -x sample1 and an HTML file is output, the name of the HTML file will be sample1.html. If a TSV file is output, the name of the file will be sample1.tsv.

lrThreshold

public Double lrThreshold

minDifferentialsToShow

public Integer minDifferentialsToShow

displayAllVariants

public boolean displayAllVariants

Constructor Details

Output

public Output()