Uses of Class
org.monarchinitiative.lirical.configuration.LiricalBuilder

Packages that use LiricalBuilder

Package	Description
org.monarchinitiative.lirical.configuration

Uses of LiricalBuilder in org.monarchinitiative.lirical.configuration

Methods in org.monarchinitiative.lirical.configuration that return LiricalBuilder

Modifier and Type	Method	Description
LiricalBuilder	LiricalBuilder.backgroundVariantFrequencyServiceFactory(BackgroundVariantFrequencyServiceFactory backgroundVariantFrequencyServiceFactory)
static LiricalBuilder	LiricalBuilder.builder(Path liricalDataDirectory)
LiricalBuilder	LiricalBuilder.clearExomiserVariantDatabaseForGenomeBuild(GenomeBuild genomeBuild)
LiricalBuilder	LiricalBuilder.exomiserResources(GenomeBuild genomeBuild, ExomiserResources resources)	Add paths for Exomiser resources required to support the genomeBuild.
LiricalBuilder	LiricalBuilder.exomiserVariantDbPath(GenomeBuild genomeBuild, Path exomiserVariantDatabase)	Deprecated, for removal: This API element is subject to removal in a future version. use exomiserResources(GenomeBuild, ExomiserResources) instead
LiricalBuilder	LiricalBuilder.parallelism(int parallelism)	Set the number threads/workers in the LIRICAL worker pool.
LiricalBuilder	LiricalBuilder.phenotypeService(PhenotypeService phenotypeService)
LiricalBuilder	LiricalBuilder.shouldLoadOrpha2Gene(boolean value)
LiricalBuilder	LiricalBuilder.variantMetadataServiceFactory(VariantMetadataServiceFactory variantMetadataServiceFactory)