Package org.monarchinitiative.lirical.core.sanitize

Class SanitizedInputs

java.lang.Object

org.monarchinitiative.lirical.core.sanitize.SanitizedInputs

public final class SanitizedInputs
extends Object

Result of input sanitation.

The HPO terms are guaranteed to be valid HPO CURIEs, age and sex are either well-formed or null, and VCF points to a readable file.

Author:

Daniel Danis

Method Summary

Modifier and Type	Method	Description
Age	age()
List<org.monarchinitiative.phenol.ontology.data.TermId>	excludedHpoTerms()
List<org.monarchinitiative.phenol.ontology.data.TermId>	presentHpoTerms()
String	sampleId()
Sex	sex()
String	toString()
Path	vcf()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Details

sampleId

public String sampleId()

presentHpoTerms

public List<org.monarchinitiative.phenol.ontology.data.TermId> presentHpoTerms()

excludedHpoTerms

public List<org.monarchinitiative.phenol.ontology.data.TermId> excludedHpoTerms()

age

public Age age()

sex

public Sex sex()

vcf

public Path vcf()

toString

public String toString()

Overrides:

toString in class Object