Package org.monarchinitiative.lirical.core.service

Interface VariantMetadataService

All Known Implementing Classes:
NoOpVariantMetadataService
public interface VariantMetadataService

  • Field Summary

    Fields
    Modifier and Type
    Field
    Description
    static final float
    DEFAULT_FREQUENCY
    We will assume a frequency of 1:100,000 if no frequency data is available.

  • Method Summary

    Modifier and Type
    Method
    Description
    VariantMetadata
    metadata(org.monarchinitiative.svart.GenomicVariant variant, List<de.charite.compbio.jannovar.annotation.VariantEffect> effects)
     

  • Field Details

    • DEFAULT_FREQUENCY

      static final float DEFAULT_FREQUENCY
      We will assume a frequency of 1:100,000 if no frequency data is available.

      Note that the frequency is stored as a percentage.

      See Also:

  • Method Details

    • metadata

      VariantMetadata metadata(org.monarchinitiative.svart.GenomicVariant variant, List<de.charite.compbio.jannovar.annotation.VariantEffect> effects)