Package org.monarchinitiative.lirical.io.background

Class BackgroundVariantFrequencyParser

java.lang.Object

org.monarchinitiative.lirical.io.background.BackgroundVariantFrequencyParser

public class BackgroundVariantFrequencyParser
extends Object

This class coordinates the input of the background frequency file. Note that this file is added as a resource to the JAR file, i.e., /background/background-hg19.tsv.

Author:

Peter Robinson

Method Summary

Modifier and Type	Method	Description
static Map<org.monarchinitiative.phenol.ontology.data.TermId,Double>	parse(BufferedReader reader)	symbol geneID freqsum-benign count-benign freqsum-path count-path

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

parse

public static Map<org.monarchinitiative.phenol.ontology.data.TermId,Double> parse(BufferedReader reader)

symbol geneID freqsum-benign count-benign freqsum-path count-path