Package org.monarchinitiative.lirical.io.output

Class TsvTemplate

java.lang.Object

org.monarchinitiative.lirical.io.output.LiricalTemplate

org.monarchinitiative.lirical.io.output.TsvTemplate

public class TsvTemplate
extends LiricalTemplate

This class coordinates the output of a TSV file that contains a suymmary of the analysis results.

Author:

Peter Robinson

Field Summary

Fields inherited from class org.monarchinitiative.lirical.io.output.LiricalTemplate

cfg, EMPTY_STRING, geneById, outputPath, templateData, topDiagnosisAnchors, topDiagnosisMap

Method Summary

Modifier and Type	Method	Description
void	outputFile()
protected String	outputFormatString()

Methods inherited from class org.monarchinitiative.lirical.io.output.LiricalTemplate

createOutputFile, mkdirIfNotExist, shortName, toVisualizableVariant

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

outputFile

public void outputFile()

outputFormatString

protected String outputFormatString()

Specified by:

outputFormatString in class LiricalTemplate