Package org.monarchinitiative.exomiser.core.proto

Class AlleleProto.ClinVar.Builder

java.lang.Object

com.google.protobuf.AbstractMessageLite.Builder

com.google.protobuf.AbstractMessage.Builder<BuilderType>

com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

org.monarchinitiative.exomiser.core.proto.AlleleProto.ClinVar.Builder

All Implemented Interfaces:

com.google.protobuf.Message.Builder, com.google.protobuf.MessageLite.Builder, com.google.protobuf.MessageLiteOrBuilder, com.google.protobuf.MessageOrBuilder, Cloneable, AlleleProto.ClinVarOrBuilder

Enclosing class:

AlleleProto.ClinVar

public static final class AlleleProto.ClinVar.Builder
extends com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
implements AlleleProto.ClinVarOrBuilder

Protobuf type ClinVar

Method Summary

Modifier and Type	Method	Description
AlleleProto.ClinVar.Builder	addAllSecondaryInterpretations(Iterable<? extends AlleleProto.ClinVar.ClinSig> values)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
AlleleProto.ClinVar.Builder	addAllSecondaryInterpretationsValue(Iterable<Integer> values)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
AlleleProto.ClinVar.Builder	addRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field, Object value)
AlleleProto.ClinVar.Builder	addSecondaryInterpretations(AlleleProto.ClinVar.ClinSig value)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
AlleleProto.ClinVar.Builder	addSecondaryInterpretationsValue(int value)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
AlleleProto.ClinVar	build()
AlleleProto.ClinVar	buildPartial()
AlleleProto.ClinVar.Builder	clear()
AlleleProto.ClinVar.Builder	clearAlleleId()	string alleleId = 1;
AlleleProto.ClinVar.Builder	clearField(com.google.protobuf.Descriptors.FieldDescriptor field)
AlleleProto.ClinVar.Builder	clearIncludedAlleles()
AlleleProto.ClinVar.Builder	clearOneof(com.google.protobuf.Descriptors.OneofDescriptor oneof)
AlleleProto.ClinVar.Builder	clearPrimaryInterpretation()	.ClinVar.ClinSig primaryInterpretation = 2;
AlleleProto.ClinVar.Builder	clearReviewStatus()	string reviewStatus = 4;
AlleleProto.ClinVar.Builder	clearSecondaryInterpretations()	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
AlleleProto.ClinVar.Builder	clone()
boolean	containsIncludedAlleles(String key)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
String	getAlleleId()	string alleleId = 1;
com.google.protobuf.ByteString	getAlleleIdBytes()	string alleleId = 1;
AlleleProto.ClinVar	getDefaultInstanceForType()
static final com.google.protobuf.Descriptors.Descriptor	getDescriptor()
com.google.protobuf.Descriptors.Descriptor	getDescriptorForType()
Map<String,AlleleProto.ClinVar.ClinSig>	getIncludedAlleles()	Deprecated.
int	getIncludedAllelesCount()	map<string, .ClinVar.ClinSig> includedAlleles = 5;
Map<String,AlleleProto.ClinVar.ClinSig>	getIncludedAllelesMap()	map<string, .ClinVar.ClinSig> includedAlleles = 5;
AlleleProto.ClinVar.ClinSig	getIncludedAllelesOrDefault(String key, AlleleProto.ClinVar.ClinSig defaultValue)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
AlleleProto.ClinVar.ClinSig	getIncludedAllelesOrThrow(String key)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
Map<String,Integer>	getIncludedAllelesValue()	Deprecated.
Map<String,Integer>	getIncludedAllelesValueMap()	map<string, .ClinVar.ClinSig> includedAlleles = 5;
int	getIncludedAllelesValueOrDefault(String key, int defaultValue)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
int	getIncludedAllelesValueOrThrow(String key)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
Map<String,AlleleProto.ClinVar.ClinSig>	getMutableIncludedAlleles()	Deprecated.
Map<String,Integer>	getMutableIncludedAllelesValue()	Deprecated.
AlleleProto.ClinVar.ClinSig	getPrimaryInterpretation()	.ClinVar.ClinSig primaryInterpretation = 2;
int	getPrimaryInterpretationValue()	.ClinVar.ClinSig primaryInterpretation = 2;
String	getReviewStatus()	string reviewStatus = 4;
com.google.protobuf.ByteString	getReviewStatusBytes()	string reviewStatus = 4;
AlleleProto.ClinVar.ClinSig	getSecondaryInterpretations(int index)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
int	getSecondaryInterpretationsCount()	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
List<AlleleProto.ClinVar.ClinSig>	getSecondaryInterpretationsList()	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
int	getSecondaryInterpretationsValue(int index)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
List<Integer>	getSecondaryInterpretationsValueList()	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable	internalGetFieldAccessorTable()
protected com.google.protobuf.MapField	internalGetMapField(int number)
protected com.google.protobuf.MapField	internalGetMutableMapField(int number)
final boolean	isInitialized()
AlleleProto.ClinVar.Builder	mergeFrom(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
AlleleProto.ClinVar.Builder	mergeFrom(com.google.protobuf.Message other)
AlleleProto.ClinVar.Builder	mergeFrom(AlleleProto.ClinVar other)
final AlleleProto.ClinVar.Builder	mergeUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields)
AlleleProto.ClinVar.Builder	putAllIncludedAlleles(Map<String,AlleleProto.ClinVar.ClinSig> values)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
AlleleProto.ClinVar.Builder	putAllIncludedAllelesValue(Map<String,Integer> values)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
AlleleProto.ClinVar.Builder	putIncludedAlleles(String key, AlleleProto.ClinVar.ClinSig value)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
AlleleProto.ClinVar.Builder	putIncludedAllelesValue(String key, int value)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
AlleleProto.ClinVar.Builder	removeIncludedAlleles(String key)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
AlleleProto.ClinVar.Builder	setAlleleId(String value)	string alleleId = 1;
AlleleProto.ClinVar.Builder	setAlleleIdBytes(com.google.protobuf.ByteString value)	string alleleId = 1;
AlleleProto.ClinVar.Builder	setField(com.google.protobuf.Descriptors.FieldDescriptor field, Object value)
AlleleProto.ClinVar.Builder	setPrimaryInterpretation(AlleleProto.ClinVar.ClinSig value)	.ClinVar.ClinSig primaryInterpretation = 2;
AlleleProto.ClinVar.Builder	setPrimaryInterpretationValue(int value)	.ClinVar.ClinSig primaryInterpretation = 2;
AlleleProto.ClinVar.Builder	setRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field, int index, Object value)
AlleleProto.ClinVar.Builder	setReviewStatus(String value)	string reviewStatus = 4;
AlleleProto.ClinVar.Builder	setReviewStatusBytes(com.google.protobuf.ByteString value)	string reviewStatus = 4;
AlleleProto.ClinVar.Builder	setSecondaryInterpretations(int index, AlleleProto.ClinVar.ClinSig value)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
AlleleProto.ClinVar.Builder	setSecondaryInterpretationsValue(int index, int value)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
final AlleleProto.ClinVar.Builder	setUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields)

Methods inherited from class com.google.protobuf.GeneratedMessageV3.Builder

getAllFields, getField, getFieldBuilder, getOneofFieldDescriptor, getParentForChildren, getRepeatedField, getRepeatedFieldBuilder, getRepeatedFieldCount, getUnknownFields, getUnknownFieldSetBuilder, hasField, hasOneof, isClean, markClean, mergeUnknownLengthDelimitedField, mergeUnknownVarintField, newBuilderForField, onBuilt, onChanged, parseUnknownField, setUnknownFieldSetBuilder, setUnknownFieldsProto3

Methods inherited from class com.google.protobuf.AbstractMessage.Builder

findInitializationErrors, getInitializationErrorString, internalMergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, newUninitializedMessageException, toString

Methods inherited from class com.google.protobuf.AbstractMessageLite.Builder

addAll, addAll, mergeDelimitedFrom, mergeDelimitedFrom, mergeFrom, newUninitializedMessageException

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.google.protobuf.Message.Builder

mergeDelimitedFrom, mergeDelimitedFrom

Methods inherited from interface com.google.protobuf.MessageLite.Builder

mergeFrom

Methods inherited from interface com.google.protobuf.MessageOrBuilder

findInitializationErrors, getAllFields, getField, getInitializationErrorString, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof

Method Details

getDescriptor

public static final com.google.protobuf.Descriptors.Descriptor getDescriptor()

internalGetMapField

protected com.google.protobuf.MapField internalGetMapField(int number)

Overrides:

internalGetMapField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

internalGetMutableMapField

protected com.google.protobuf.MapField internalGetMutableMapField(int number)

Overrides:

internalGetMutableMapField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

internalGetFieldAccessorTable

protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable internalGetFieldAccessorTable()

Specified by:

internalGetFieldAccessorTable in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

clear

public AlleleProto.ClinVar.Builder clear()

Specified by:

clear in interface com.google.protobuf.Message.Builder

Specified by:

clear in interface com.google.protobuf.MessageLite.Builder

Overrides:

clear in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

getDescriptorForType

public com.google.protobuf.Descriptors.Descriptor getDescriptorForType()

Specified by:

getDescriptorForType in interface com.google.protobuf.Message.Builder

Specified by:

getDescriptorForType in interface com.google.protobuf.MessageOrBuilder

Overrides:

getDescriptorForType in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

getDefaultInstanceForType

public AlleleProto.ClinVar getDefaultInstanceForType()

Specified by:

getDefaultInstanceForType in interface com.google.protobuf.MessageLiteOrBuilder

Specified by:

getDefaultInstanceForType in interface com.google.protobuf.MessageOrBuilder

build

public AlleleProto.ClinVar build()

Specified by:

build in interface com.google.protobuf.Message.Builder

Specified by:

build in interface com.google.protobuf.MessageLite.Builder

buildPartial

public AlleleProto.ClinVar buildPartial()

Specified by:

buildPartial in interface com.google.protobuf.Message.Builder

Specified by:

buildPartial in interface com.google.protobuf.MessageLite.Builder

clone

public AlleleProto.ClinVar.Builder clone()

Specified by:

clone in interface com.google.protobuf.Message.Builder

Specified by:

clone in interface com.google.protobuf.MessageLite.Builder

Overrides:

clone in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

setField

public AlleleProto.ClinVar.Builder setField(com.google.protobuf.Descriptors.FieldDescriptor field,
 Object value)

Specified by:

setField in interface com.google.protobuf.Message.Builder

Overrides:

setField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

clearField

public AlleleProto.ClinVar.Builder clearField(com.google.protobuf.Descriptors.FieldDescriptor field)

Specified by:

clearField in interface com.google.protobuf.Message.Builder

Overrides:

clearField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

clearOneof

public AlleleProto.ClinVar.Builder clearOneof(com.google.protobuf.Descriptors.OneofDescriptor oneof)

Specified by:

clearOneof in interface com.google.protobuf.Message.Builder

Overrides:

clearOneof in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

setRepeatedField

public AlleleProto.ClinVar.Builder setRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field,
 int index,
 Object value)

Specified by:

setRepeatedField in interface com.google.protobuf.Message.Builder

Overrides:

setRepeatedField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

addRepeatedField

public AlleleProto.ClinVar.Builder addRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field,
 Object value)

Specified by:

addRepeatedField in interface com.google.protobuf.Message.Builder

Overrides:

addRepeatedField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

mergeFrom

public AlleleProto.ClinVar.Builder mergeFrom(com.google.protobuf.Message other)

Specified by:

mergeFrom in interface com.google.protobuf.Message.Builder

Overrides:

mergeFrom in class com.google.protobuf.AbstractMessage.Builder<AlleleProto.ClinVar.Builder>

mergeFrom

public AlleleProto.ClinVar.Builder mergeFrom(AlleleProto.ClinVar other)

isInitialized

public final boolean isInitialized()

Specified by:

isInitialized in interface com.google.protobuf.MessageLiteOrBuilder

Overrides:

isInitialized in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

mergeFrom

public AlleleProto.ClinVar.Builder mergeFrom(com.google.protobuf.CodedInputStream input,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                      throws IOException

Specified by:

mergeFrom in interface com.google.protobuf.Message.Builder

Specified by:

mergeFrom in interface com.google.protobuf.MessageLite.Builder

Overrides:

mergeFrom in class com.google.protobuf.AbstractMessage.Builder<AlleleProto.ClinVar.Builder>

Throws:

IOException

getAlleleId

public String getAlleleId()

string alleleId = 1;

Specified by:

getAlleleId in interface AlleleProto.ClinVarOrBuilder

Returns:

The alleleId.

getAlleleIdBytes

public com.google.protobuf.ByteString getAlleleIdBytes()

string alleleId = 1;

Specified by:

getAlleleIdBytes in interface AlleleProto.ClinVarOrBuilder

Returns:

The bytes for alleleId.

setAlleleId

public AlleleProto.ClinVar.Builder setAlleleId(String value)

string alleleId = 1;

Parameters:

value - The alleleId to set.

Returns:

This builder for chaining.

clearAlleleId

public AlleleProto.ClinVar.Builder clearAlleleId()

string alleleId = 1;

Returns:

This builder for chaining.

setAlleleIdBytes

public AlleleProto.ClinVar.Builder setAlleleIdBytes(com.google.protobuf.ByteString value)

string alleleId = 1;

Parameters:

value - The bytes for alleleId to set.

Returns:

This builder for chaining.

getPrimaryInterpretationValue

public int getPrimaryInterpretationValue()

.ClinVar.ClinSig primaryInterpretation = 2;

Specified by:

getPrimaryInterpretationValue in interface AlleleProto.ClinVarOrBuilder

Returns:

The enum numeric value on the wire for primaryInterpretation.

setPrimaryInterpretationValue

public AlleleProto.ClinVar.Builder setPrimaryInterpretationValue(int value)

.ClinVar.ClinSig primaryInterpretation = 2;

Parameters:

value - The enum numeric value on the wire for primaryInterpretation to set.

Returns:

This builder for chaining.

getPrimaryInterpretation

public AlleleProto.ClinVar.ClinSig getPrimaryInterpretation()

.ClinVar.ClinSig primaryInterpretation = 2;

Specified by:

getPrimaryInterpretation in interface AlleleProto.ClinVarOrBuilder

Returns:

The primaryInterpretation.

setPrimaryInterpretation

public AlleleProto.ClinVar.Builder setPrimaryInterpretation(AlleleProto.ClinVar.ClinSig value)

.ClinVar.ClinSig primaryInterpretation = 2;

Parameters:

value - The primaryInterpretation to set.

Returns:

This builder for chaining.

clearPrimaryInterpretation

public AlleleProto.ClinVar.Builder clearPrimaryInterpretation()

.ClinVar.ClinSig primaryInterpretation = 2;

Returns:

This builder for chaining.

getSecondaryInterpretationsList

public List<AlleleProto.ClinVar.ClinSig> getSecondaryInterpretationsList()

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Specified by:

getSecondaryInterpretationsList in interface AlleleProto.ClinVarOrBuilder

Returns:

A list containing the secondaryInterpretations.

getSecondaryInterpretationsCount

public int getSecondaryInterpretationsCount()

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Specified by:

getSecondaryInterpretationsCount in interface AlleleProto.ClinVarOrBuilder

Returns:

The count of secondaryInterpretations.

getSecondaryInterpretations

public AlleleProto.ClinVar.ClinSig getSecondaryInterpretations(int index)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Specified by:

getSecondaryInterpretations in interface AlleleProto.ClinVarOrBuilder

Parameters:

index - The index of the element to return.

Returns:

The secondaryInterpretations at the given index.

setSecondaryInterpretations

public AlleleProto.ClinVar.Builder setSecondaryInterpretations(int index,
 AlleleProto.ClinVar.ClinSig value)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Parameters:

index - The index to set the value at.

value - The secondaryInterpretations to set.

Returns:

This builder for chaining.

addSecondaryInterpretations

public AlleleProto.ClinVar.Builder addSecondaryInterpretations(AlleleProto.ClinVar.ClinSig value)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Parameters:

value - The secondaryInterpretations to add.

Returns:

This builder for chaining.

addAllSecondaryInterpretations

public AlleleProto.ClinVar.Builder addAllSecondaryInterpretations(Iterable<? extends AlleleProto.ClinVar.ClinSig> values)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Parameters:

values - The secondaryInterpretations to add.

Returns:

This builder for chaining.

clearSecondaryInterpretations

public AlleleProto.ClinVar.Builder clearSecondaryInterpretations()

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Returns:

This builder for chaining.

getSecondaryInterpretationsValueList

public List<Integer> getSecondaryInterpretationsValueList()

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Specified by:

getSecondaryInterpretationsValueList in interface AlleleProto.ClinVarOrBuilder

Returns:

A list containing the enum numeric values on the wire for secondaryInterpretations.

getSecondaryInterpretationsValue

public int getSecondaryInterpretationsValue(int index)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Specified by:

getSecondaryInterpretationsValue in interface AlleleProto.ClinVarOrBuilder

Parameters:

index - The index of the value to return.

Returns:

The enum numeric value on the wire of secondaryInterpretations at the given index.

setSecondaryInterpretationsValue

public AlleleProto.ClinVar.Builder setSecondaryInterpretationsValue(int index,
 int value)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Parameters:

index - The index to set the value at.

value - The enum numeric value on the wire for secondaryInterpretations to set.

Returns:

This builder for chaining.

addSecondaryInterpretationsValue

public AlleleProto.ClinVar.Builder addSecondaryInterpretationsValue(int value)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Parameters:

value - The enum numeric value on the wire for secondaryInterpretations to add.

Returns:

This builder for chaining.

addAllSecondaryInterpretationsValue

public AlleleProto.ClinVar.Builder addAllSecondaryInterpretationsValue(Iterable<Integer> values)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Parameters:

values - The enum numeric values on the wire for secondaryInterpretations to add.

Returns:

This builder for chaining.

getReviewStatus

public String getReviewStatus()

string reviewStatus = 4;

Specified by:

getReviewStatus in interface AlleleProto.ClinVarOrBuilder

Returns:

The reviewStatus.

getReviewStatusBytes

public com.google.protobuf.ByteString getReviewStatusBytes()

string reviewStatus = 4;

Specified by:

getReviewStatusBytes in interface AlleleProto.ClinVarOrBuilder

Returns:

The bytes for reviewStatus.

setReviewStatus

public AlleleProto.ClinVar.Builder setReviewStatus(String value)

string reviewStatus = 4;

Parameters:

value - The reviewStatus to set.

Returns:

This builder for chaining.

clearReviewStatus

public AlleleProto.ClinVar.Builder clearReviewStatus()

string reviewStatus = 4;

Returns:

This builder for chaining.

setReviewStatusBytes

public AlleleProto.ClinVar.Builder setReviewStatusBytes(com.google.protobuf.ByteString value)

string reviewStatus = 4;

Parameters:

value - The bytes for reviewStatus to set.

Returns:

This builder for chaining.

getIncludedAllelesCount

public int getIncludedAllelesCount()

Description copied from interface: AlleleProto.ClinVarOrBuilder

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

getIncludedAllelesCount in interface AlleleProto.ClinVarOrBuilder

containsIncludedAlleles

public boolean containsIncludedAlleles(String key)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

containsIncludedAlleles in interface AlleleProto.ClinVarOrBuilder

getIncludedAlleles

@Deprecated
public Map<String,AlleleProto.ClinVar.ClinSig> getIncludedAlleles()

Deprecated.

Use getIncludedAllelesMap() instead.

Specified by:

getIncludedAlleles in interface AlleleProto.ClinVarOrBuilder

getIncludedAllelesMap

public Map<String,AlleleProto.ClinVar.ClinSig> getIncludedAllelesMap()

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

getIncludedAllelesMap in interface AlleleProto.ClinVarOrBuilder

getIncludedAllelesOrDefault

public AlleleProto.ClinVar.ClinSig getIncludedAllelesOrDefault(String key,
 AlleleProto.ClinVar.ClinSig defaultValue)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

getIncludedAllelesOrDefault in interface AlleleProto.ClinVarOrBuilder

getIncludedAllelesOrThrow

public AlleleProto.ClinVar.ClinSig getIncludedAllelesOrThrow(String key)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

getIncludedAllelesOrThrow in interface AlleleProto.ClinVarOrBuilder

getIncludedAllelesValue

@Deprecated
public Map<String,Integer> getIncludedAllelesValue()

Deprecated.

Use getIncludedAllelesValueMap() instead.

Specified by:

getIncludedAllelesValue in interface AlleleProto.ClinVarOrBuilder

getIncludedAllelesValueMap

public Map<String,Integer> getIncludedAllelesValueMap()

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

getIncludedAllelesValueMap in interface AlleleProto.ClinVarOrBuilder

getIncludedAllelesValueOrDefault

public int getIncludedAllelesValueOrDefault(String key,
 int defaultValue)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

getIncludedAllelesValueOrDefault in interface AlleleProto.ClinVarOrBuilder

getIncludedAllelesValueOrThrow

public int getIncludedAllelesValueOrThrow(String key)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

getIncludedAllelesValueOrThrow in interface AlleleProto.ClinVarOrBuilder

clearIncludedAlleles

public AlleleProto.ClinVar.Builder clearIncludedAlleles()

removeIncludedAlleles

public AlleleProto.ClinVar.Builder removeIncludedAlleles(String key)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

getMutableIncludedAlleles

@Deprecated
public Map<String,AlleleProto.ClinVar.ClinSig> getMutableIncludedAlleles()

Deprecated.

Use alternate mutation accessors instead.

putIncludedAlleles

public AlleleProto.ClinVar.Builder putIncludedAlleles(String key,
 AlleleProto.ClinVar.ClinSig value)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

putAllIncludedAlleles

public AlleleProto.ClinVar.Builder putAllIncludedAlleles(Map<String,AlleleProto.ClinVar.ClinSig> values)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

getMutableIncludedAllelesValue

@Deprecated
public Map<String,Integer> getMutableIncludedAllelesValue()

Deprecated.

Use alternate mutation accessors instead.

putIncludedAllelesValue

public AlleleProto.ClinVar.Builder putIncludedAllelesValue(String key,
 int value)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

putAllIncludedAllelesValue

public AlleleProto.ClinVar.Builder putAllIncludedAllelesValue(Map<String,Integer> values)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

setUnknownFields

public final AlleleProto.ClinVar.Builder setUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields)

Specified by:

setUnknownFields in interface com.google.protobuf.Message.Builder

Overrides:

setUnknownFields in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

mergeUnknownFields

public final AlleleProto.ClinVar.Builder mergeUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields)

Specified by:

mergeUnknownFields in interface com.google.protobuf.Message.Builder

Overrides:

mergeUnknownFields in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>