Package org.monarchinitiative.exomiser.core.proto

Class AlleleProto.ClinVar.Builder

java.lang.Object

com.google.protobuf.AbstractMessageLite.Builder

com.google.protobuf.AbstractMessage.Builder<BuilderType>

com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

org.monarchinitiative.exomiser.core.proto.AlleleProto.ClinVar.Builder

All Implemented Interfaces:

com.google.protobuf.Message.Builder, com.google.protobuf.MessageLite.Builder, com.google.protobuf.MessageLiteOrBuilder, com.google.protobuf.MessageOrBuilder, Cloneable, AlleleProto.ClinVarOrBuilder

Enclosing class:

AlleleProto.ClinVar

public static final class AlleleProto.ClinVar.Builder
extends com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>
implements AlleleProto.ClinVarOrBuilder

Protobuf type ClinVar

Method Summary

Modifier and Type	Method	Description
AlleleProto.ClinVar.Builder	addAllSecondaryInterpretations(Iterable<? extends AlleleProto.ClinVar.ClinSig> values)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
AlleleProto.ClinVar.Builder	addAllSecondaryInterpretationsValue(Iterable<Integer> values)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
AlleleProto.ClinVar.Builder	addRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field, Object value)
AlleleProto.ClinVar.Builder	addSecondaryInterpretations(AlleleProto.ClinVar.ClinSig value)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
AlleleProto.ClinVar.Builder	addSecondaryInterpretationsValue(int value)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
AlleleProto.ClinVar	build()
AlleleProto.ClinVar	buildPartial()
AlleleProto.ClinVar.Builder	clear()
AlleleProto.ClinVar.Builder	clearAlleleId()	Deprecated.
AlleleProto.ClinVar.Builder	clearClinSigCounts()
AlleleProto.ClinVar.Builder	clearField(com.google.protobuf.Descriptors.FieldDescriptor field)
AlleleProto.ClinVar.Builder	clearGeneId()	string gene_id = 8;
AlleleProto.ClinVar.Builder	clearGeneSymbol()	string gene_symbol = 7;
AlleleProto.ClinVar.Builder	clearHgvsCdna()	string hgvs_cdna = 10;
AlleleProto.ClinVar.Builder	clearHgvsProtein()	string hgvs_protein = 11;
AlleleProto.ClinVar.Builder	clearIncludedAlleles()
AlleleProto.ClinVar.Builder	clearOneof(com.google.protobuf.Descriptors.OneofDescriptor oneof)
AlleleProto.ClinVar.Builder	clearPrimaryInterpretation()	.ClinVar.ClinSig primaryInterpretation = 2;
AlleleProto.ClinVar.Builder	clearReviewStatus()	.ClinVar.ReviewStatus reviewStatus = 4;
AlleleProto.ClinVar.Builder	clearSecondaryInterpretations()	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
AlleleProto.ClinVar.Builder	clearVariantEffect()	.VariantEffect variant_effect = 9;
AlleleProto.ClinVar.Builder	clearVariationId()	string variationId = 6;
AlleleProto.ClinVar.Builder	clone()
boolean	containsClinSigCounts(String key)	CLNSIGCONF
boolean	containsIncludedAlleles(String key)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
String	getAlleleId()	Deprecated.
com.google.protobuf.ByteString	getAlleleIdBytes()	Deprecated.
Map<String,Integer>	getClinSigCounts()	Deprecated.
int	getClinSigCountsCount()	CLNSIGCONF
Map<String,Integer>	getClinSigCountsMap()	CLNSIGCONF
int	getClinSigCountsOrDefault(String key, int defaultValue)	CLNSIGCONF
int	getClinSigCountsOrThrow(String key)	CLNSIGCONF
AlleleProto.ClinVar	getDefaultInstanceForType()
static final com.google.protobuf.Descriptors.Descriptor	getDescriptor()
com.google.protobuf.Descriptors.Descriptor	getDescriptorForType()
String	getGeneId()	string gene_id = 8;
com.google.protobuf.ByteString	getGeneIdBytes()	string gene_id = 8;
String	getGeneSymbol()	string gene_symbol = 7;
com.google.protobuf.ByteString	getGeneSymbolBytes()	string gene_symbol = 7;
String	getHgvsCdna()	string hgvs_cdna = 10;
com.google.protobuf.ByteString	getHgvsCdnaBytes()	string hgvs_cdna = 10;
String	getHgvsProtein()	string hgvs_protein = 11;
com.google.protobuf.ByteString	getHgvsProteinBytes()	string hgvs_protein = 11;
Map<String,AlleleProto.ClinVar.ClinSig>	getIncludedAlleles()	Deprecated.
int	getIncludedAllelesCount()	map<string, .ClinVar.ClinSig> includedAlleles = 5;
Map<String,AlleleProto.ClinVar.ClinSig>	getIncludedAllelesMap()	map<string, .ClinVar.ClinSig> includedAlleles = 5;
AlleleProto.ClinVar.ClinSig	getIncludedAllelesOrDefault(String key, AlleleProto.ClinVar.ClinSig defaultValue)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
AlleleProto.ClinVar.ClinSig	getIncludedAllelesOrThrow(String key)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
Map<String,Integer>	getIncludedAllelesValue()	Deprecated.
Map<String,Integer>	getIncludedAllelesValueMap()	map<string, .ClinVar.ClinSig> includedAlleles = 5;
int	getIncludedAllelesValueOrDefault(String key, int defaultValue)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
int	getIncludedAllelesValueOrThrow(String key)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
Map<String,Integer>	getMutableClinSigCounts()	Deprecated.
Map<String,AlleleProto.ClinVar.ClinSig>	getMutableIncludedAlleles()	Deprecated.
Map<String,Integer>	getMutableIncludedAllelesValue()	Deprecated.
AlleleProto.ClinVar.ClinSig	getPrimaryInterpretation()	.ClinVar.ClinSig primaryInterpretation = 2;
int	getPrimaryInterpretationValue()	.ClinVar.ClinSig primaryInterpretation = 2;
AlleleProto.ClinVar.ReviewStatus	getReviewStatus()	.ClinVar.ReviewStatus reviewStatus = 4;
int	getReviewStatusValue()	.ClinVar.ReviewStatus reviewStatus = 4;
AlleleProto.ClinVar.ClinSig	getSecondaryInterpretations(int index)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
int	getSecondaryInterpretationsCount()	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
List<AlleleProto.ClinVar.ClinSig>	getSecondaryInterpretationsList()	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
int	getSecondaryInterpretationsValue(int index)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
List<Integer>	getSecondaryInterpretationsValueList()	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
AlleleProto.VariantEffect	getVariantEffect()	.VariantEffect variant_effect = 9;
int	getVariantEffectValue()	.VariantEffect variant_effect = 9;
String	getVariationId()	string variationId = 6;
com.google.protobuf.ByteString	getVariationIdBytes()	string variationId = 6;
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable	internalGetFieldAccessorTable()
protected com.google.protobuf.MapField	internalGetMapField(int number)
protected com.google.protobuf.MapField	internalGetMutableMapField(int number)
final boolean	isInitialized()
AlleleProto.ClinVar.Builder	mergeFrom(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
AlleleProto.ClinVar.Builder	mergeFrom(com.google.protobuf.Message other)
AlleleProto.ClinVar.Builder	mergeFrom(AlleleProto.ClinVar other)
final AlleleProto.ClinVar.Builder	mergeUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields)
AlleleProto.ClinVar.Builder	putAllClinSigCounts(Map<String,Integer> values)	CLNSIGCONF
AlleleProto.ClinVar.Builder	putAllIncludedAlleles(Map<String,AlleleProto.ClinVar.ClinSig> values)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
AlleleProto.ClinVar.Builder	putAllIncludedAllelesValue(Map<String,Integer> values)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
AlleleProto.ClinVar.Builder	putClinSigCounts(String key, int value)	CLNSIGCONF
AlleleProto.ClinVar.Builder	putIncludedAlleles(String key, AlleleProto.ClinVar.ClinSig value)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
AlleleProto.ClinVar.Builder	putIncludedAllelesValue(String key, int value)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
AlleleProto.ClinVar.Builder	removeClinSigCounts(String key)	CLNSIGCONF
AlleleProto.ClinVar.Builder	removeIncludedAlleles(String key)	map<string, .ClinVar.ClinSig> includedAlleles = 5;
AlleleProto.ClinVar.Builder	setAlleleId(String value)	Deprecated.
AlleleProto.ClinVar.Builder	setAlleleIdBytes(com.google.protobuf.ByteString value)	Deprecated.
AlleleProto.ClinVar.Builder	setField(com.google.protobuf.Descriptors.FieldDescriptor field, Object value)
AlleleProto.ClinVar.Builder	setGeneId(String value)	string gene_id = 8;
AlleleProto.ClinVar.Builder	setGeneIdBytes(com.google.protobuf.ByteString value)	string gene_id = 8;
AlleleProto.ClinVar.Builder	setGeneSymbol(String value)	string gene_symbol = 7;
AlleleProto.ClinVar.Builder	setGeneSymbolBytes(com.google.protobuf.ByteString value)	string gene_symbol = 7;
AlleleProto.ClinVar.Builder	setHgvsCdna(String value)	string hgvs_cdna = 10;
AlleleProto.ClinVar.Builder	setHgvsCdnaBytes(com.google.protobuf.ByteString value)	string hgvs_cdna = 10;
AlleleProto.ClinVar.Builder	setHgvsProtein(String value)	string hgvs_protein = 11;
AlleleProto.ClinVar.Builder	setHgvsProteinBytes(com.google.protobuf.ByteString value)	string hgvs_protein = 11;
AlleleProto.ClinVar.Builder	setPrimaryInterpretation(AlleleProto.ClinVar.ClinSig value)	.ClinVar.ClinSig primaryInterpretation = 2;
AlleleProto.ClinVar.Builder	setPrimaryInterpretationValue(int value)	.ClinVar.ClinSig primaryInterpretation = 2;
AlleleProto.ClinVar.Builder	setRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field, int index, Object value)
AlleleProto.ClinVar.Builder	setReviewStatus(AlleleProto.ClinVar.ReviewStatus value)	.ClinVar.ReviewStatus reviewStatus = 4;
AlleleProto.ClinVar.Builder	setReviewStatusValue(int value)	.ClinVar.ReviewStatus reviewStatus = 4;
AlleleProto.ClinVar.Builder	setSecondaryInterpretations(int index, AlleleProto.ClinVar.ClinSig value)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
AlleleProto.ClinVar.Builder	setSecondaryInterpretationsValue(int index, int value)	repeated .ClinVar.ClinSig secondaryInterpretations = 3;
final AlleleProto.ClinVar.Builder	setUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields)
AlleleProto.ClinVar.Builder	setVariantEffect(AlleleProto.VariantEffect value)	.VariantEffect variant_effect = 9;
AlleleProto.ClinVar.Builder	setVariantEffectValue(int value)	.VariantEffect variant_effect = 9;
AlleleProto.ClinVar.Builder	setVariationId(String value)	string variationId = 6;
AlleleProto.ClinVar.Builder	setVariationIdBytes(com.google.protobuf.ByteString value)	string variationId = 6;

Methods inherited from class com.google.protobuf.GeneratedMessageV3.Builder

getAllFields, getField, getFieldBuilder, getOneofFieldDescriptor, getParentForChildren, getRepeatedField, getRepeatedFieldBuilder, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof, isClean, markClean, newBuilderForField, onBuilt, onChanged, setUnknownFieldsProto3

Methods inherited from class com.google.protobuf.AbstractMessage.Builder

findInitializationErrors, getInitializationErrorString, internalMergeFrom, mergeDelimitedFrom, mergeDelimitedFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, newUninitializedMessageException, toString

Methods inherited from class com.google.protobuf.AbstractMessageLite.Builder

addAll, addAll, mergeFrom, newUninitializedMessageException

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.google.protobuf.MessageLite.Builder

mergeFrom

Methods inherited from interface com.google.protobuf.MessageOrBuilder

findInitializationErrors, getAllFields, getField, getInitializationErrorString, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof

Method Details

getDescriptor

public static final com.google.protobuf.Descriptors.Descriptor getDescriptor()

internalGetMapField

protected com.google.protobuf.MapField internalGetMapField(int number)

Overrides:

internalGetMapField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

internalGetMutableMapField

protected com.google.protobuf.MapField internalGetMutableMapField(int number)

Overrides:

internalGetMutableMapField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

internalGetFieldAccessorTable

protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable internalGetFieldAccessorTable()

Specified by:

internalGetFieldAccessorTable in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

clear

public AlleleProto.ClinVar.Builder clear()

Specified by:

clear in interface com.google.protobuf.Message.Builder

Specified by:

clear in interface com.google.protobuf.MessageLite.Builder

Overrides:

clear in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

getDescriptorForType

public com.google.protobuf.Descriptors.Descriptor getDescriptorForType()

Specified by:

getDescriptorForType in interface com.google.protobuf.Message.Builder

Specified by:

getDescriptorForType in interface com.google.protobuf.MessageOrBuilder

Overrides:

getDescriptorForType in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

getDefaultInstanceForType

public AlleleProto.ClinVar getDefaultInstanceForType()

Specified by:

getDefaultInstanceForType in interface com.google.protobuf.MessageLiteOrBuilder

Specified by:

getDefaultInstanceForType in interface com.google.protobuf.MessageOrBuilder

build

public AlleleProto.ClinVar build()

Specified by:

build in interface com.google.protobuf.Message.Builder

Specified by:

build in interface com.google.protobuf.MessageLite.Builder

buildPartial

public AlleleProto.ClinVar buildPartial()

Specified by:

buildPartial in interface com.google.protobuf.Message.Builder

Specified by:

buildPartial in interface com.google.protobuf.MessageLite.Builder

clone

public AlleleProto.ClinVar.Builder clone()

Specified by:

clone in interface com.google.protobuf.Message.Builder

Specified by:

clone in interface com.google.protobuf.MessageLite.Builder

Overrides:

clone in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

setField

public AlleleProto.ClinVar.Builder setField(com.google.protobuf.Descriptors.FieldDescriptor field,
 Object value)

Specified by:

setField in interface com.google.protobuf.Message.Builder

Overrides:

setField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

clearField

public AlleleProto.ClinVar.Builder clearField(com.google.protobuf.Descriptors.FieldDescriptor field)

Specified by:

clearField in interface com.google.protobuf.Message.Builder

Overrides:

clearField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

clearOneof

public AlleleProto.ClinVar.Builder clearOneof(com.google.protobuf.Descriptors.OneofDescriptor oneof)

Specified by:

clearOneof in interface com.google.protobuf.Message.Builder

Overrides:

clearOneof in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

setRepeatedField

public AlleleProto.ClinVar.Builder setRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field,
 int index,
 Object value)

Specified by:

setRepeatedField in interface com.google.protobuf.Message.Builder

Overrides:

setRepeatedField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

addRepeatedField

public AlleleProto.ClinVar.Builder addRepeatedField(com.google.protobuf.Descriptors.FieldDescriptor field,
 Object value)

Specified by:

addRepeatedField in interface com.google.protobuf.Message.Builder

Overrides:

addRepeatedField in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

mergeFrom

public AlleleProto.ClinVar.Builder mergeFrom(com.google.protobuf.Message other)

Specified by:

mergeFrom in interface com.google.protobuf.Message.Builder

Overrides:

mergeFrom in class com.google.protobuf.AbstractMessage.Builder<AlleleProto.ClinVar.Builder>

mergeFrom

public AlleleProto.ClinVar.Builder mergeFrom(AlleleProto.ClinVar other)

isInitialized

public final boolean isInitialized()

Specified by:

isInitialized in interface com.google.protobuf.MessageLiteOrBuilder

Overrides:

isInitialized in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

mergeFrom

public AlleleProto.ClinVar.Builder mergeFrom(com.google.protobuf.CodedInputStream input,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                      throws IOException

Specified by:

mergeFrom in interface com.google.protobuf.Message.Builder

Specified by:

mergeFrom in interface com.google.protobuf.MessageLite.Builder

Overrides:

mergeFrom in class com.google.protobuf.AbstractMessage.Builder<AlleleProto.ClinVar.Builder>

Throws:

IOException

getAlleleId

@Deprecated
public String getAlleleId()

Deprecated.

string alleleId = 1 [deprecated = true];

Specified by:

getAlleleId in interface AlleleProto.ClinVarOrBuilder

Returns:

The alleleId.

getAlleleIdBytes

@Deprecated
public com.google.protobuf.ByteString getAlleleIdBytes()

Deprecated.

string alleleId = 1 [deprecated = true];

Specified by:

getAlleleIdBytes in interface AlleleProto.ClinVarOrBuilder

Returns:

The bytes for alleleId.

setAlleleId

@Deprecated
public AlleleProto.ClinVar.Builder setAlleleId(String value)

Deprecated.

string alleleId = 1 [deprecated = true];

Parameters:

value - The alleleId to set.

Returns:

This builder for chaining.

clearAlleleId

@Deprecated
public AlleleProto.ClinVar.Builder clearAlleleId()

Deprecated.

string alleleId = 1 [deprecated = true];

Returns:

This builder for chaining.

setAlleleIdBytes

@Deprecated
public AlleleProto.ClinVar.Builder setAlleleIdBytes(com.google.protobuf.ByteString value)

Deprecated.

string alleleId = 1 [deprecated = true];

Parameters:

value - The bytes for alleleId to set.

Returns:

This builder for chaining.

getPrimaryInterpretationValue

public int getPrimaryInterpretationValue()

.ClinVar.ClinSig primaryInterpretation = 2;

Specified by:

getPrimaryInterpretationValue in interface AlleleProto.ClinVarOrBuilder

Returns:

The enum numeric value on the wire for primaryInterpretation.

setPrimaryInterpretationValue

public AlleleProto.ClinVar.Builder setPrimaryInterpretationValue(int value)

.ClinVar.ClinSig primaryInterpretation = 2;

Parameters:

value - The enum numeric value on the wire for primaryInterpretation to set.

Returns:

This builder for chaining.

getPrimaryInterpretation

public AlleleProto.ClinVar.ClinSig getPrimaryInterpretation()

.ClinVar.ClinSig primaryInterpretation = 2;

Specified by:

getPrimaryInterpretation in interface AlleleProto.ClinVarOrBuilder

Returns:

The primaryInterpretation.

setPrimaryInterpretation

public AlleleProto.ClinVar.Builder setPrimaryInterpretation(AlleleProto.ClinVar.ClinSig value)

.ClinVar.ClinSig primaryInterpretation = 2;

Parameters:

value - The primaryInterpretation to set.

Returns:

This builder for chaining.

clearPrimaryInterpretation

public AlleleProto.ClinVar.Builder clearPrimaryInterpretation()

.ClinVar.ClinSig primaryInterpretation = 2;

Returns:

This builder for chaining.

getSecondaryInterpretationsList

public List<AlleleProto.ClinVar.ClinSig> getSecondaryInterpretationsList()

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Specified by:

getSecondaryInterpretationsList in interface AlleleProto.ClinVarOrBuilder

Returns:

A list containing the secondaryInterpretations.

getSecondaryInterpretationsCount

public int getSecondaryInterpretationsCount()

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Specified by:

getSecondaryInterpretationsCount in interface AlleleProto.ClinVarOrBuilder

Returns:

The count of secondaryInterpretations.

getSecondaryInterpretations

public AlleleProto.ClinVar.ClinSig getSecondaryInterpretations(int index)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Specified by:

getSecondaryInterpretations in interface AlleleProto.ClinVarOrBuilder

Parameters:

index - The index of the element to return.

Returns:

The secondaryInterpretations at the given index.

setSecondaryInterpretations

public AlleleProto.ClinVar.Builder setSecondaryInterpretations(int index,
 AlleleProto.ClinVar.ClinSig value)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Parameters:

index - The index to set the value at.

value - The secondaryInterpretations to set.

Returns:

This builder for chaining.

addSecondaryInterpretations

public AlleleProto.ClinVar.Builder addSecondaryInterpretations(AlleleProto.ClinVar.ClinSig value)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Parameters:

value - The secondaryInterpretations to add.

Returns:

This builder for chaining.

addAllSecondaryInterpretations

public AlleleProto.ClinVar.Builder addAllSecondaryInterpretations(Iterable<? extends AlleleProto.ClinVar.ClinSig> values)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Parameters:

values - The secondaryInterpretations to add.

Returns:

This builder for chaining.

clearSecondaryInterpretations

public AlleleProto.ClinVar.Builder clearSecondaryInterpretations()

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Returns:

This builder for chaining.

getSecondaryInterpretationsValueList

public List<Integer> getSecondaryInterpretationsValueList()

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Specified by:

getSecondaryInterpretationsValueList in interface AlleleProto.ClinVarOrBuilder

Returns:

A list containing the enum numeric values on the wire for secondaryInterpretations.

getSecondaryInterpretationsValue

public int getSecondaryInterpretationsValue(int index)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Specified by:

getSecondaryInterpretationsValue in interface AlleleProto.ClinVarOrBuilder

Parameters:

index - The index of the value to return.

Returns:

The enum numeric value on the wire of secondaryInterpretations at the given index.

setSecondaryInterpretationsValue

public AlleleProto.ClinVar.Builder setSecondaryInterpretationsValue(int index,
 int value)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Parameters:

index - The index of the value to return.

Returns:

The enum numeric value on the wire of secondaryInterpretations at the given index.

addSecondaryInterpretationsValue

public AlleleProto.ClinVar.Builder addSecondaryInterpretationsValue(int value)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Parameters:

value - The enum numeric value on the wire for secondaryInterpretations to add.

Returns:

This builder for chaining.

addAllSecondaryInterpretationsValue

public AlleleProto.ClinVar.Builder addAllSecondaryInterpretationsValue(Iterable<Integer> values)

repeated .ClinVar.ClinSig secondaryInterpretations = 3;

Parameters:

values - The enum numeric values on the wire for secondaryInterpretations to add.

Returns:

This builder for chaining.

getReviewStatusValue

public int getReviewStatusValue()

.ClinVar.ReviewStatus reviewStatus = 4;

Specified by:

getReviewStatusValue in interface AlleleProto.ClinVarOrBuilder

Returns:

The enum numeric value on the wire for reviewStatus.

setReviewStatusValue

public AlleleProto.ClinVar.Builder setReviewStatusValue(int value)

.ClinVar.ReviewStatus reviewStatus = 4;

Parameters:

value - The enum numeric value on the wire for reviewStatus to set.

Returns:

This builder for chaining.

getReviewStatus

public AlleleProto.ClinVar.ReviewStatus getReviewStatus()

.ClinVar.ReviewStatus reviewStatus = 4;

Specified by:

getReviewStatus in interface AlleleProto.ClinVarOrBuilder

Returns:

The reviewStatus.

setReviewStatus

public AlleleProto.ClinVar.Builder setReviewStatus(AlleleProto.ClinVar.ReviewStatus value)

.ClinVar.ReviewStatus reviewStatus = 4;

Parameters:

value - The reviewStatus to set.

Returns:

This builder for chaining.

clearReviewStatus

public AlleleProto.ClinVar.Builder clearReviewStatus()

.ClinVar.ReviewStatus reviewStatus = 4;

Returns:

This builder for chaining.

getIncludedAllelesCount

public int getIncludedAllelesCount()

Description copied from interface: AlleleProto.ClinVarOrBuilder

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

getIncludedAllelesCount in interface AlleleProto.ClinVarOrBuilder

containsIncludedAlleles

public boolean containsIncludedAlleles(String key)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

containsIncludedAlleles in interface AlleleProto.ClinVarOrBuilder

getIncludedAlleles

@Deprecated
public Map<String,AlleleProto.ClinVar.ClinSig> getIncludedAlleles()

Deprecated.

Use getIncludedAllelesMap() instead.

Specified by:

getIncludedAlleles in interface AlleleProto.ClinVarOrBuilder

getIncludedAllelesMap

public Map<String,AlleleProto.ClinVar.ClinSig> getIncludedAllelesMap()

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

getIncludedAllelesMap in interface AlleleProto.ClinVarOrBuilder

getIncludedAllelesOrDefault

public AlleleProto.ClinVar.ClinSig getIncludedAllelesOrDefault(String key,
 AlleleProto.ClinVar.ClinSig defaultValue)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

getIncludedAllelesOrDefault in interface AlleleProto.ClinVarOrBuilder

getIncludedAllelesOrThrow

public AlleleProto.ClinVar.ClinSig getIncludedAllelesOrThrow(String key)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

getIncludedAllelesOrThrow in interface AlleleProto.ClinVarOrBuilder

getIncludedAllelesValue

@Deprecated
public Map<String,Integer> getIncludedAllelesValue()

Deprecated.

Use getIncludedAllelesValueMap() instead.

Specified by:

getIncludedAllelesValue in interface AlleleProto.ClinVarOrBuilder

getIncludedAllelesValueMap

public Map<String,Integer> getIncludedAllelesValueMap()

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

getIncludedAllelesValueMap in interface AlleleProto.ClinVarOrBuilder

getIncludedAllelesValueOrDefault

public int getIncludedAllelesValueOrDefault(String key,
 int defaultValue)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

getIncludedAllelesValueOrDefault in interface AlleleProto.ClinVarOrBuilder

getIncludedAllelesValueOrThrow

public int getIncludedAllelesValueOrThrow(String key)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

Specified by:

getIncludedAllelesValueOrThrow in interface AlleleProto.ClinVarOrBuilder

clearIncludedAlleles

public AlleleProto.ClinVar.Builder clearIncludedAlleles()

removeIncludedAlleles

public AlleleProto.ClinVar.Builder removeIncludedAlleles(String key)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

getMutableIncludedAlleles

@Deprecated
public Map<String,AlleleProto.ClinVar.ClinSig> getMutableIncludedAlleles()

Deprecated.

Use alternate mutation accessors instead.

putIncludedAlleles

public AlleleProto.ClinVar.Builder putIncludedAlleles(String key,
 AlleleProto.ClinVar.ClinSig value)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

putAllIncludedAlleles

public AlleleProto.ClinVar.Builder putAllIncludedAlleles(Map<String,AlleleProto.ClinVar.ClinSig> values)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

getMutableIncludedAllelesValue

@Deprecated
public Map<String,Integer> getMutableIncludedAllelesValue()

Deprecated.

Use alternate mutation accessors instead.

putIncludedAllelesValue

public AlleleProto.ClinVar.Builder putIncludedAllelesValue(String key,
 int value)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

putAllIncludedAllelesValue

public AlleleProto.ClinVar.Builder putAllIncludedAllelesValue(Map<String,Integer> values)

map<string, .ClinVar.ClinSig> includedAlleles = 5;

getVariationId

public String getVariationId()

string variationId = 6;

Specified by:

getVariationId in interface AlleleProto.ClinVarOrBuilder

Returns:

The variationId.

getVariationIdBytes

public com.google.protobuf.ByteString getVariationIdBytes()

string variationId = 6;

Specified by:

getVariationIdBytes in interface AlleleProto.ClinVarOrBuilder

Returns:

The bytes for variationId.

setVariationId

public AlleleProto.ClinVar.Builder setVariationId(String value)

string variationId = 6;

Parameters:

value - The variationId to set.

Returns:

This builder for chaining.

clearVariationId

public AlleleProto.ClinVar.Builder clearVariationId()

string variationId = 6;

Returns:

This builder for chaining.

setVariationIdBytes

public AlleleProto.ClinVar.Builder setVariationIdBytes(com.google.protobuf.ByteString value)

string variationId = 6;

Parameters:

value - The bytes for variationId to set.

Returns:

This builder for chaining.

getGeneSymbol

public String getGeneSymbol()

string gene_symbol = 7;

Specified by:

getGeneSymbol in interface AlleleProto.ClinVarOrBuilder

Returns:

The geneSymbol.

getGeneSymbolBytes

public com.google.protobuf.ByteString getGeneSymbolBytes()

string gene_symbol = 7;

Specified by:

getGeneSymbolBytes in interface AlleleProto.ClinVarOrBuilder

Returns:

The bytes for geneSymbol.

setGeneSymbol

public AlleleProto.ClinVar.Builder setGeneSymbol(String value)

string gene_symbol = 7;

Parameters:

value - The geneSymbol to set.

Returns:

This builder for chaining.

clearGeneSymbol

public AlleleProto.ClinVar.Builder clearGeneSymbol()

string gene_symbol = 7;

Returns:

This builder for chaining.

setGeneSymbolBytes

public AlleleProto.ClinVar.Builder setGeneSymbolBytes(com.google.protobuf.ByteString value)

string gene_symbol = 7;

Parameters:

value - The bytes for geneSymbol to set.

Returns:

This builder for chaining.

getGeneId

public String getGeneId()

string gene_id = 8;

Specified by:

getGeneId in interface AlleleProto.ClinVarOrBuilder

Returns:

The geneId.

getGeneIdBytes

public com.google.protobuf.ByteString getGeneIdBytes()

string gene_id = 8;

Specified by:

getGeneIdBytes in interface AlleleProto.ClinVarOrBuilder

Returns:

The bytes for geneId.

setGeneId

public AlleleProto.ClinVar.Builder setGeneId(String value)

string gene_id = 8;

Parameters:

value - The geneId to set.

Returns:

This builder for chaining.

clearGeneId

public AlleleProto.ClinVar.Builder clearGeneId()

string gene_id = 8;

Returns:

This builder for chaining.

setGeneIdBytes

public AlleleProto.ClinVar.Builder setGeneIdBytes(com.google.protobuf.ByteString value)

string gene_id = 8;

Parameters:

value - The bytes for geneId to set.

Returns:

This builder for chaining.

getVariantEffectValue

public int getVariantEffectValue()

.VariantEffect variant_effect = 9;

Specified by:

getVariantEffectValue in interface AlleleProto.ClinVarOrBuilder

Returns:

The enum numeric value on the wire for variantEffect.

setVariantEffectValue

public AlleleProto.ClinVar.Builder setVariantEffectValue(int value)

.VariantEffect variant_effect = 9;

Parameters:

value - The enum numeric value on the wire for variantEffect to set.

Returns:

This builder for chaining.

getVariantEffect

public AlleleProto.VariantEffect getVariantEffect()

.VariantEffect variant_effect = 9;

Specified by:

getVariantEffect in interface AlleleProto.ClinVarOrBuilder

Returns:

The variantEffect.

setVariantEffect

public AlleleProto.ClinVar.Builder setVariantEffect(AlleleProto.VariantEffect value)

.VariantEffect variant_effect = 9;

Parameters:

value - The variantEffect to set.

Returns:

This builder for chaining.

clearVariantEffect

public AlleleProto.ClinVar.Builder clearVariantEffect()

.VariantEffect variant_effect = 9;

Returns:

This builder for chaining.

getHgvsCdna

public String getHgvsCdna()

string hgvs_cdna = 10;

Specified by:

getHgvsCdna in interface AlleleProto.ClinVarOrBuilder

Returns:

The hgvsCdna.

getHgvsCdnaBytes

public com.google.protobuf.ByteString getHgvsCdnaBytes()

string hgvs_cdna = 10;

Specified by:

getHgvsCdnaBytes in interface AlleleProto.ClinVarOrBuilder

Returns:

The bytes for hgvsCdna.

setHgvsCdna

public AlleleProto.ClinVar.Builder setHgvsCdna(String value)

string hgvs_cdna = 10;

Parameters:

value - The hgvsCdna to set.

Returns:

This builder for chaining.

clearHgvsCdna

public AlleleProto.ClinVar.Builder clearHgvsCdna()

string hgvs_cdna = 10;

Returns:

This builder for chaining.

setHgvsCdnaBytes

public AlleleProto.ClinVar.Builder setHgvsCdnaBytes(com.google.protobuf.ByteString value)

string hgvs_cdna = 10;

Parameters:

value - The bytes for hgvsCdna to set.

Returns:

This builder for chaining.

getHgvsProtein

public String getHgvsProtein()

string hgvs_protein = 11;

Specified by:

getHgvsProtein in interface AlleleProto.ClinVarOrBuilder

Returns:

The hgvsProtein.

getHgvsProteinBytes

public com.google.protobuf.ByteString getHgvsProteinBytes()

string hgvs_protein = 11;

Specified by:

getHgvsProteinBytes in interface AlleleProto.ClinVarOrBuilder

Returns:

The bytes for hgvsProtein.

setHgvsProtein

public AlleleProto.ClinVar.Builder setHgvsProtein(String value)

string hgvs_protein = 11;

Parameters:

value - The hgvsProtein to set.

Returns:

This builder for chaining.

clearHgvsProtein

public AlleleProto.ClinVar.Builder clearHgvsProtein()

string hgvs_protein = 11;

Returns:

This builder for chaining.

setHgvsProteinBytes

public AlleleProto.ClinVar.Builder setHgvsProteinBytes(com.google.protobuf.ByteString value)

string hgvs_protein = 11;

Parameters:

value - The bytes for hgvsProtein to set.

Returns:

This builder for chaining.

getClinSigCountsCount

public int getClinSigCountsCount()

Description copied from interface: AlleleProto.ClinVarOrBuilder

CLNSIGCONF
 

map<string, uint32> clin_sig_counts = 12;

Specified by:

getClinSigCountsCount in interface AlleleProto.ClinVarOrBuilder

containsClinSigCounts

public boolean containsClinSigCounts(String key)

CLNSIGCONF
 

map<string, uint32> clin_sig_counts = 12;

Specified by:

containsClinSigCounts in interface AlleleProto.ClinVarOrBuilder

getClinSigCounts

@Deprecated
public Map<String,Integer> getClinSigCounts()

Deprecated.

Use getClinSigCountsMap() instead.

Specified by:

getClinSigCounts in interface AlleleProto.ClinVarOrBuilder

getClinSigCountsMap

public Map<String,Integer> getClinSigCountsMap()

CLNSIGCONF
 

map<string, uint32> clin_sig_counts = 12;

Specified by:

getClinSigCountsMap in interface AlleleProto.ClinVarOrBuilder

getClinSigCountsOrDefault

public int getClinSigCountsOrDefault(String key,
 int defaultValue)

CLNSIGCONF
 

map<string, uint32> clin_sig_counts = 12;

Specified by:

getClinSigCountsOrDefault in interface AlleleProto.ClinVarOrBuilder

getClinSigCountsOrThrow

public int getClinSigCountsOrThrow(String key)

CLNSIGCONF
 

map<string, uint32> clin_sig_counts = 12;

Specified by:

getClinSigCountsOrThrow in interface AlleleProto.ClinVarOrBuilder

clearClinSigCounts

public AlleleProto.ClinVar.Builder clearClinSigCounts()

removeClinSigCounts

public AlleleProto.ClinVar.Builder removeClinSigCounts(String key)

CLNSIGCONF
 

map<string, uint32> clin_sig_counts = 12;

getMutableClinSigCounts

@Deprecated
public Map<String,Integer> getMutableClinSigCounts()

Deprecated.

Use alternate mutation accessors instead.

putClinSigCounts

public AlleleProto.ClinVar.Builder putClinSigCounts(String key,
 int value)

CLNSIGCONF
 

map<string, uint32> clin_sig_counts = 12;

putAllClinSigCounts

public AlleleProto.ClinVar.Builder putAllClinSigCounts(Map<String,Integer> values)

CLNSIGCONF
 

map<string, uint32> clin_sig_counts = 12;

setUnknownFields

public final AlleleProto.ClinVar.Builder setUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields)

Specified by:

setUnknownFields in interface com.google.protobuf.Message.Builder

Overrides:

setUnknownFields in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>

mergeUnknownFields

public final AlleleProto.ClinVar.Builder mergeUnknownFields(com.google.protobuf.UnknownFieldSet unknownFields)

Specified by:

mergeUnknownFields in interface com.google.protobuf.Message.Builder

Overrides:

mergeUnknownFields in class com.google.protobuf.GeneratedMessageV3.Builder<AlleleProto.ClinVar.Builder>