Package org.monarchinitiative.lirical.core.io

Interface VariantParserFactory

All Known Implementing Classes:

VcfVariantParserFactory

public interface VariantParserFactory

Method Summary

Modifier and Type	Method	Description
Optional<VariantParser>	forPath(Path variantResource, GenomeBuild genomeBuild, TranscriptDatabase transcriptDatabase)
static VariantParserFactory	noOpFactory()	Get a factory that can be used when LIRICAL seems to be configured for phenotype only analyses.

Method Details

noOpFactory

static VariantParserFactory noOpFactory()

Get a factory that can be used when LIRICAL seems to be configured for phenotype only analyses.

Returns:

a VariantParserFactory that never provides a VariantParser.

forPath

Optional<VariantParser> forPath(Path variantResource,
 GenomeBuild genomeBuild,
 TranscriptDatabase transcriptDatabase)