Package org.monarchinitiative.lirical.core.model

Enum Class ClinvarClnSig

java.lang.Object

java.lang.Enum<ClinvarClnSig>

org.monarchinitiative.lirical.core.model.ClinvarClnSig

All Implemented Interfaces:

Serializable, Comparable<ClinvarClnSig>, Constable

public enum ClinvarClnSig
extends Enum<ClinvarClnSig>

Clinvar clinical significance categories.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum.EnumDesc<E extends Enum<E>>

Enum Constant Summary

Enum Constants

Enum Constant	Description
AFFECTS
ASSOCIATION
BENIGN
BENIGN_OR_LIKELY_BENIGN
CONFLICTING_PATHOGENICITY_INTERPRETATIONS
DRUG_RESPONSE
LIKELY_BENIGN
LIKELY_PATHOGENIC
NOT_PROVIDED
OTHER
PATHOGENIC
PATHOGENIC_OR_LIKELY_PATHOGENIC
PROTECTIVE
RISK_FACTOR
UNCERTAIN_SIGNIFICANCE

Method Summary

Modifier and Type	Method	Description
boolean	isBenignOrLikelyBenign()
boolean	isPathogenicOrLikelyPathogenic()
boolean	notBenignOrLikelyBenign()
static ClinvarClnSig	valueOf(String name)	Returns the enum constant of this class with the specified name.
static ClinvarClnSig[]	values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, describeConstable, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Details

PATHOGENIC

public static final ClinvarClnSig PATHOGENIC

LIKELY_PATHOGENIC

public static final ClinvarClnSig LIKELY_PATHOGENIC

PATHOGENIC_OR_LIKELY_PATHOGENIC

public static final ClinvarClnSig PATHOGENIC_OR_LIKELY_PATHOGENIC

UNCERTAIN_SIGNIFICANCE

public static final ClinvarClnSig UNCERTAIN_SIGNIFICANCE

CONFLICTING_PATHOGENICITY_INTERPRETATIONS

public static final ClinvarClnSig CONFLICTING_PATHOGENICITY_INTERPRETATIONS

BENIGN

public static final ClinvarClnSig BENIGN

LIKELY_BENIGN

public static final ClinvarClnSig LIKELY_BENIGN

BENIGN_OR_LIKELY_BENIGN

public static final ClinvarClnSig BENIGN_OR_LIKELY_BENIGN

AFFECTS

public static final ClinvarClnSig AFFECTS

ASSOCIATION

public static final ClinvarClnSig ASSOCIATION

DRUG_RESPONSE

public static final ClinvarClnSig DRUG_RESPONSE

PROTECTIVE

public static final ClinvarClnSig PROTECTIVE

RISK_FACTOR

public static final ClinvarClnSig RISK_FACTOR

OTHER

public static final ClinvarClnSig OTHER

NOT_PROVIDED

public static final ClinvarClnSig NOT_PROVIDED

Method Details

values

public static ClinvarClnSig[] values()

Returns an array containing the constants of this enum class, in the order they are declared.

Returns:

an array containing the constants of this enum class, in the order they are declared

valueOf

public static ClinvarClnSig valueOf(String name)

Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum class has no constant with the specified name

NullPointerException - if the argument is null

isPathogenicOrLikelyPathogenic

public boolean isPathogenicOrLikelyPathogenic()

isBenignOrLikelyBenign

public boolean isBenignOrLikelyBenign()

Returns:

true if the significance is one of BENIGN, LIKELY_BENIGN, or BENIGN_OR_LIKELY_BENIGN

notBenignOrLikelyBenign

public boolean notBenignOrLikelyBenign()

Returns:

false if the significance is one of BENIGN, LIKELY_BENIGN, or BENIGN_OR_LIKELY_BENIGN