Package org.monarchinitiative.lirical.core.sanitize

Interface SanitationInputs

All Known Implementing Classes:
PhenopacketData, YamlConfig
public interface SanitationInputs
The sanitation requirements.

  • Method Details

    • sampleId

      String sampleId()
      Returns:
      a string with the sample ID or null if not available.

    • presentHpoTerms

      List<String> presentHpoTerms()
      Returns:
      a list with CURIEs of HPO terms that represent the phenotypic features observed in the index patient.

    • excludedHpoTerms

      List<String> excludedHpoTerms()
      Returns:
      a list with CURIEs of HPO terms that represent the phenotypic features that were investigated and excluded in the index patient.

    • age

      String age()
      Returns:
      a string with the age or null if not available.

    • sex

      String sex()
      Returns:
      a string with the sex or null if not available.

    • vcf

      String vcf()
      Returns:
      a string with the path of the VCF file with variants or null if not available.