Uses of Interface
org.monarchinitiative.lirical.core.sanitize.SanitationInputs

Packages that use SanitationInputs

Package	Description
org.monarchinitiative.lirical.cli.cmd	Commands to run LIRICAL in different configurations.
org.monarchinitiative.lirical.cli.yaml	Read user input formatted into YAML file.
org.monarchinitiative.lirical.core.sanitize	Sanitize the user-provided SanitationInputs.
org.monarchinitiative.lirical.io.analysis	Read user input formatted as a v1 or v2 phenopacket.

Uses of SanitationInputs in org.monarchinitiative.lirical.cli.cmd

Methods in org.monarchinitiative.lirical.cli.cmd that return SanitationInputs

Modifier and Type	Method	Description
protected SanitationInputs	PhenopacketCommand.procureSanitationInputs()
protected SanitationInputs	PrioritizeCommand.procureSanitationInputs()
protected SanitationInputs	YamlCommand.procureSanitationInputs()

Uses of SanitationInputs in org.monarchinitiative.lirical.cli.yaml

Classes in org.monarchinitiative.lirical.cli.yaml that implement SanitationInputs

Modifier and Type	Class	Description
class	YamlConfig	This class is used to input the YAML configuration file.

Uses of SanitationInputs in org.monarchinitiative.lirical.core.sanitize

Methods in org.monarchinitiative.lirical.core.sanitize with parameters of type SanitationInputs

Modifier and Type	Method	Description
SanitationResult	InputSanitizer.sanitize(SanitationInputs inputs)

Uses of SanitationInputs in org.monarchinitiative.lirical.io.analysis

Classes in org.monarchinitiative.lirical.io.analysis that implement SanitationInputs

Modifier and Type	Class	Description
class	PhenopacketData	Phenopacket attributes that are relevant for LIRICAL.