Class PhenopacketCommand

java.lang.Object
org.monarchinitiative.lirical.cli.cmd.OutputCommand
org.monarchinitiative.lirical.cli.cmd.PhenopacketCommand
All Implemented Interfaces:
Callable<Integer>

public class PhenopacketCommand extends OutputCommand
Run LIRICAL from a Phenopacket -- with or without accompanying VCF file.
Author:
Peter N Robinson
  • Field Details

    • genomeBuild

      public String genomeBuild
    • phenopacketPath

      public Path phenopacketPath
    • vcfPath

      public Path vcfPath
    • UNKNOWN_VERSION_PLACEHOLDER

      protected static final String UNKNOWN_VERSION_PLACEHOLDER
      See Also:
    • dataSection

      public org.monarchinitiative.lirical.cli.cmd.LiricalConfigurationCommand.DataSection dataSection
    • runConfiguration

      public org.monarchinitiative.lirical.cli.cmd.LiricalConfigurationCommand.RunConfiguration runConfiguration
    • verbosity

      public boolean[] verbosity
  • Constructor Details

    • PhenopacketCommand

      public PhenopacketCommand()
  • Method Details