Class YamlCommand

java.lang.Object
org.monarchinitiative.lirical.cli.cmd.OutputCommand
org.monarchinitiative.lirical.cli.cmd.YamlCommand
All Implemented Interfaces:
Callable<Integer>

public class YamlCommand extends OutputCommand
This class coordinates the main analysis of a VCF file plus list of observed HPO terms. This analysis is driven by a YAML file.
Author:
Peter Robinson
  • Field Details

    • yamlPath

      public Path yamlPath
    • genomeBuild

      public String genomeBuild
    • UNKNOWN_VERSION_PLACEHOLDER

      protected static final String UNKNOWN_VERSION_PLACEHOLDER
      See Also:
    • dataSection

      public org.monarchinitiative.lirical.cli.cmd.LiricalConfigurationCommand.DataSection dataSection
    • runConfiguration

      public org.monarchinitiative.lirical.cli.cmd.LiricalConfigurationCommand.RunConfiguration runConfiguration
    • verbosity

      public boolean[] verbosity
  • Constructor Details

    • YamlCommand

      public YamlCommand()
  • Method Details