Class ClinVarData.Builder
java.lang.Object
org.monarchinitiative.lirical.exomiser_db_adapter.model.pathogenicity.ClinVarData.Builder
- Enclosing class:
- ClinVarData
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionbuild()
conflictingInterpretationCounts
(Map<ClinVarData.ClinSig, Integer> conflictingInterpretationCounts) geneSymbol
(String geneSymbol) hgvsProtein
(String hgvsProtein) includedAlleles
(Map<String, ClinVarData.ClinSig> includedAlleles) primaryInterpretation
(ClinVarData.ClinSig primaryInterpretation) reviewStatus
(ClinVarData.ReviewStatus reviewStatus) secondaryInterpretations
(Set<ClinVarData.ClinSig> secondaryInterpretations) variantEffect
(de.charite.compbio.jannovar.annotation.VariantEffect variantEffect) variationId
(String variationId)
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Constructor Details
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Builder
public Builder()
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Method Details
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variationId
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secondaryInterpretations
public ClinVarData.Builder secondaryInterpretations(Set<ClinVarData.ClinSig> secondaryInterpretations) -
reviewStatus
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includedAlleles
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geneSymbol
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variantEffect
public ClinVarData.Builder variantEffect(de.charite.compbio.jannovar.annotation.VariantEffect variantEffect) -
hgvsCdna
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hgvsProtein
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conflictingInterpretationCounts
public ClinVarData.Builder conflictingInterpretationCounts(Map<ClinVarData.ClinSig, Integer> conflictingInterpretationCounts) -
build
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