Package org.monarchinitiative.lirical.exomiser_db_adapter.model.pathogenicity

Enum Class PathogenicitySource

java.lang.Object

java.lang.Enum<PathogenicitySource>

org.monarchinitiative.lirical.exomiser_db_adapter.model.pathogenicity.PathogenicitySource

All Implemented Interfaces:

Serializable, Comparable<PathogenicitySource>, Constable

public enum PathogenicitySource
extends Enum<PathogenicitySource>

Enum representing the pathogenicity prediction method/database used to calculate a given score. CAUTION! REVEL scores tend to be more nuanced and frequently lower thant either the default variant effect score or the other predicted path scores, yet apparently are more concordant with ClinVar. However we do not yet recommend using REVEL either in isolation of with other pathogenicity predictors as the REVEL scores tend to be overwhelmed by the other scores. USE AT YOUR OWN RISK!!!

Author:

Jules Jacobsen

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum.EnumDesc<E extends Enum<E>>

Enum Constant Summary

Enum Constants

Enum Constant	Description
CADD
CLINVAR
DBVAR
M_CAP
MPC
MUTATION_TASTER
MVP
POLYPHEN
PRIMATE_AI
REMM
REVEL
SIFT
TEST
VARIANT_TYPE

Method Summary

Modifier and Type	Method	Description
static PathogenicitySource	valueOf(String name)	Returns the enum constant of this class with the specified name.
static PathogenicitySource[]	values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, describeConstable, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Details

VARIANT_TYPE

public static final PathogenicitySource VARIANT_TYPE

POLYPHEN

public static final PathogenicitySource POLYPHEN

MUTATION_TASTER

public static final PathogenicitySource MUTATION_TASTER

SIFT

public static final PathogenicitySource SIFT

CADD

public static final PathogenicitySource CADD

REMM

public static final PathogenicitySource REMM

REVEL

public static final PathogenicitySource REVEL

M_CAP

public static final PathogenicitySource M_CAP

MPC

public static final PathogenicitySource MPC

MVP

public static final PathogenicitySource MVP

PRIMATE_AI

public static final PathogenicitySource PRIMATE_AI

TEST

public static final PathogenicitySource TEST

DBVAR

public static final PathogenicitySource DBVAR

CLINVAR

public static final PathogenicitySource CLINVAR

Method Details

values

public static PathogenicitySource[] values()

Returns an array containing the constants of this enum class, in the order they are declared.

Returns:

an array containing the constants of this enum class, in the order they are declared

valueOf

public static PathogenicitySource valueOf(String name)

Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum class has no constant with the specified name

NullPointerException - if the argument is null