Package org.monarchinitiative.lirical.io

Class LiricalDataResolver

java.lang.Object

org.monarchinitiative.lirical.io.LiricalDataResolver

public class LiricalDataResolver
extends Object

Method Summary

Modifier and Type	Method	Description
Path	dataDirectory()
Path	hg19RefseqTxDatabase()
Path	hg19UcscTxDatabase()
Path	hg38RefseqTxDatabase()
Path	hg38UcscTxDatabase()
Path	hgncCompleteSet()
Path	hpoJson()
Path	mim2geneMedgen()
static LiricalDataResolver	of(Path dataDirectory)
Path	phenotypeAnnotations()
Path	transcriptCacheFor(GenomeBuild genomeBuild, TranscriptDatabase txDb)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

of

public static LiricalDataResolver of(Path dataDirectory)
                              throws LiricalDataException

Throws:

LiricalDataException

dataDirectory

public Path dataDirectory()

hpoJson

public Path hpoJson()

hgncCompleteSet

public Path hgncCompleteSet()

mim2geneMedgen

public Path mim2geneMedgen()

phenotypeAnnotations

public Path phenotypeAnnotations()

hg19UcscTxDatabase

public Path hg19UcscTxDatabase()

hg19RefseqTxDatabase

public Path hg19RefseqTxDatabase()

hg38RefseqTxDatabase

public Path hg38RefseqTxDatabase()

hg38UcscTxDatabase

public Path hg38UcscTxDatabase()

transcriptCacheFor

public Path transcriptCacheFor(GenomeBuild genomeBuild,
 TranscriptDatabase txDb)