Package org.monarchinitiative.lirical.core.model

Class ClinVarAlleleData

java.lang.Object

org.monarchinitiative.lirical.core.model.ClinVarAlleleData

public class ClinVarAlleleData
extends Object

A subset of ClinVar allele data relevant for LIRICAL analysis.

We use the primary interpretation for prioritization and the allele ID for linking out (e.g. here for an allele ID 270003)

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object o)
Optional<Long>	getAlleleId()	Get ClinVar allele ID.
Optional<String>	getAlleleIdString()
ClinvarClnSig	getClinvarClnSig()
int	hashCode()
static ClinVarAlleleData	of(ClinvarClnSig clinvarClnSig, Long alleleId)
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Method Details

of

public static ClinVarAlleleData of(ClinvarClnSig clinvarClnSig,
 Long alleleId)

getClinvarClnSig

public ClinvarClnSig getClinvarClnSig()

Returns:

the primary interpretation of the ClinVar data for the variant

getAlleleId

public Optional<Long> getAlleleId()

Get ClinVar allele ID.

E.g.

Returns:

an Optional ClinVar allele ID Long or an empty Optional.

getAlleleIdString

public Optional<String> getAlleleIdString()

Returns:

ClinVar allele ID as String

See Also:

• getAlleleId()

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object