Package org.monarchinitiative.lirical.core.output

Class LrThreshold

java.lang.Object
org.monarchinitiative.lirical.core.output.LrThreshold
public class LrThreshold extends Object
This class encapsulates the likelihood ratio threshold, which is an optional user argument (-t). If the user has set a value, then we only show d iagnoses in the detailed HTML output if it exceeds or equals this threshold. There is an overall minimum number to show (3).
Author:
Peter Robinson

  • Method Details

    • notInitialized

      public static LrThreshold notInitialized()

    • setToUserDefinedThreshold

      public static LrThreshold setToUserDefinedThreshold(double t)

    • isSetByUser

      public boolean isSetByUser()

    • getThreshold

      public double getThreshold()

    • getMinimumToShowInThresholdMode

      public int getMinimumToShowInThresholdMode()

    • equals

      public boolean equals(Object o)
      Overrides:
      equals in class Object

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object

    • toString

      public String toString()
      Overrides:
      toString in class Object