Uses of Interface
org.monarchinitiative.lirical.core.service.BackgroundVariantFrequencyService

Packages that use BackgroundVariantFrequencyService

Package	Description
org.monarchinitiative.lirical.configuration.impl
org.monarchinitiative.lirical.core.likelihoodratio	Package with logic for calculation of likelihood ratios for phenotypic or genotypic test results.
org.monarchinitiative.lirical.core.service	Package with services used across LIRICAL.
org.monarchinitiative.lirical.io.background

Uses of BackgroundVariantFrequencyService in org.monarchinitiative.lirical.configuration.impl

Methods in org.monarchinitiative.lirical.configuration.impl that return types with arguments of type BackgroundVariantFrequencyService

Modifier and Type	Method	Description
Optional<BackgroundVariantFrequencyService>	BundledBackgroundVariantFrequencyServiceFactory.forGenomeBuild(GenomeBuild genomeBuild, double defaultVariantBackgroundFrequency)

Uses of BackgroundVariantFrequencyService in org.monarchinitiative.lirical.core.likelihoodratio

Constructors in org.monarchinitiative.lirical.core.likelihoodratio with parameters of type BackgroundVariantFrequencyService

Modifier	Constructor	Description
	GenotypeLikelihoodRatio(BackgroundVariantFrequencyService backgroundVariantFrequencyService, GenotypeLikelihoodRatio.Options options)

Uses of BackgroundVariantFrequencyService in org.monarchinitiative.lirical.core.service

Methods in org.monarchinitiative.lirical.core.service that return BackgroundVariantFrequencyService

Modifier and Type	Method	Description
static BackgroundVariantFrequencyService	BackgroundVariantFrequencyService.of(Map<org.monarchinitiative.phenol.ontology.data.TermId,Double> frequencyMap, double defaultVariantBackgroundFrequency)

Methods in org.monarchinitiative.lirical.core.service that return types with arguments of type BackgroundVariantFrequencyService

Modifier and Type	Method	Description
Optional<BackgroundVariantFrequencyService>	BackgroundVariantFrequencyServiceFactory.forGenomeBuild(GenomeBuild genomeBuild, double defaultVariantBackgroundFrequency)

Uses of BackgroundVariantFrequencyService in org.monarchinitiative.lirical.io.background

Methods in org.monarchinitiative.lirical.io.background that return types with arguments of type BackgroundVariantFrequencyService

Modifier and Type	Method	Description
Optional<BackgroundVariantFrequencyService>	CustomBackgroundVariantFrequencyServiceFactory.forGenomeBuild(GenomeBuild genomeBuild, double defaultVariantBackgroundFrequency)