Package org.monarchinitiative.lirical.io.background

Class CustomBackgroundVariantFrequencyServiceFactory

java.lang.Object

org.monarchinitiative.lirical.io.background.CustomBackgroundVariantFrequencyServiceFactory

All Implemented Interfaces:

BackgroundVariantFrequencyServiceFactory

public class CustomBackgroundVariantFrequencyServiceFactory
extends Object
implements BackgroundVariantFrequencyServiceFactory

A BackgroundVariantFrequencyServiceFactory implementation that uses user-provided frequency files.

Method Summary

Modifier and Type	Method	Description
Optional<BackgroundVariantFrequencyService>	forGenomeBuild(GenomeBuild genomeBuild, double defaultVariantBackgroundFrequency)
static CustomBackgroundVariantFrequencyServiceFactory	of(Map<GenomeBuild,Path> backgroundFilePaths)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

of

public static CustomBackgroundVariantFrequencyServiceFactory of(Map<GenomeBuild,Path> backgroundFilePaths)

forGenomeBuild

public Optional<BackgroundVariantFrequencyService> forGenomeBuild(GenomeBuild genomeBuild,
 double defaultVariantBackgroundFrequency)

Specified by:

forGenomeBuild in interface BackgroundVariantFrequencyServiceFactory