Package org.monarchinitiative.lirical.exomiser_db_adapter.model

Class AlleleProtoAdaptor

java.lang.Object

org.monarchinitiative.lirical.exomiser_db_adapter.model.AlleleProtoAdaptor

public class AlleleProtoAdaptor
extends Object

Since:

10.1.0

Author:

Jules Jacobsen <j.jacobsen@qmul.ac.uk>

Method Summary

Modifier and Type	Method	Description
static AlleleProto.AlleleKey	toAlleleKey(int contigId, int start, String ref, String alt)
static AlleleProto.AlleleKey	toAlleleKey(org.monarchinitiative.svart.GenomicVariant variant)
static ClinVarData	toClinVarData(AlleleProto.ClinVar clinVar)
static FrequencyData	toFrequencyData(AlleleProto.AlleleProperties alleleProperties)
static PathogenicityData	toPathogenicityData(AlleleProto.AlleleProperties alleleProperties)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

toAlleleKey

public static AlleleProto.AlleleKey toAlleleKey(org.monarchinitiative.svart.GenomicVariant variant)

toAlleleKey

public static AlleleProto.AlleleKey toAlleleKey(int contigId,
 int start,
 String ref,
 String alt)

toFrequencyData

public static FrequencyData toFrequencyData(AlleleProto.AlleleProperties alleleProperties)

toPathogenicityData

public static PathogenicityData toPathogenicityData(AlleleProto.AlleleProperties alleleProperties)

toClinVarData

public static ClinVarData toClinVarData(AlleleProto.ClinVar clinVar)