Package org.monarchinitiative.lirical.exomiser_db_adapter.model.frequency

Class Frequency

java.lang.Object

org.monarchinitiative.lirical.exomiser_db_adapter.model.frequency.Frequency

public class Frequency
extends Object

Author:

Jules Jacobsen

Method Summary

Modifier and Type	Method	Description
int	ac()
int	an()
boolean	equals(Object o)
float	frequency()
int	hashCode()
int	homs()
boolean	isOverThreshold(float threshold)
static Frequency	of(FrequencySource source, float value)
static Frequency	of(FrequencySource source, int ac, int an, int homs)
static float	percentageFrequency(int ac, int an)	Returns the frequency of ac/an as a percentage frequency.
FrequencySource	source()
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Method Details

of

public static Frequency of(FrequencySource source,
 float value)

of

public static Frequency of(FrequencySource source,
 int ac,
 int an,
 int homs)

source

public FrequencySource source()

frequency

public float frequency()

ac

public int ac()

an

public int an()

homs

public int homs()

isOverThreshold

public boolean isOverThreshold(float threshold)

percentageFrequency

public static float percentageFrequency(int ac,
 int an)

Returns the frequency of ac/an as a percentage frequency.

Parameters:

ac - Allele Count - the number of observed alleles.

an - Allele Number - size of the population in which the AC was observed.

Returns:

the frequency of ac/an as a percentage frequency in the range 0..100

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object