Package org.monarchinitiative.lirical.exomiser_db_adapter.model.frequency

Class FrequencyData.Builder

java.lang.Object

org.monarchinitiative.lirical.exomiser_db_adapter.model.frequency.FrequencyData.Builder

Enclosing class:

FrequencyData

public static class FrequencyData.Builder
extends Object

Constructor Summary

Constructors

Constructor	Description
Builder()

Method Summary

Modifier and Type	Method	Description
FrequencyData.Builder	addFrequency(FrequencySource frequencySource, float frequency)
FrequencyData.Builder	addFrequency(FrequencySource frequencySource, int ac, int an, int homCount)
FrequencyData	build()
FrequencyData.Builder	filterSources(Set<FrequencySource> sourcesToRetain)	Removes any frequency data not in the argument set of FrequencySource.
FrequencyData.Builder	mergeFrequencyData(FrequencyData frequencyData)	Merges the frequency data from the input frequencyData into the builder instance.
FrequencyData.Builder	rsId(String rsId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Builder

public Builder()

Method Details

rsId

public FrequencyData.Builder rsId(String rsId)

addFrequency

public FrequencyData.Builder addFrequency(FrequencySource frequencySource,
 float frequency)

Parameters:

frequencySource -

frequency - the frequency of the variant as a percentage frequency.

Returns:

addFrequency

public FrequencyData.Builder addFrequency(FrequencySource frequencySource,
 int ac,
 int an,
 int homCount)

filterSources

public FrequencyData.Builder filterSources(Set<FrequencySource> sourcesToRetain)

Removes any frequency data not in the argument set of FrequencySource. Equivalent to a stream.filter() operation.

Returns:

the FrequencyData.Builder instance with potentially updated frequencies

Since:

14.0.0

mergeFrequencyData

public FrequencyData.Builder mergeFrequencyData(FrequencyData frequencyData)

Merges the frequency data from the input frequencyData into the builder instance. Any existing frequencies will be overwritten by the input set.

Returns:

the FrequencyData.Builder instance with potentially updated frequencies

Since:

14.0.0

build

public FrequencyData build()