Package org.monarchinitiative.lirical.exomiser_db_adapter.model.pathogenicity

Class ClinVarData.Builder

java.lang.Object

org.monarchinitiative.lirical.exomiser_db_adapter.model.pathogenicity.ClinVarData.Builder

Enclosing class:

ClinVarData

public static class ClinVarData.Builder
extends Object

Constructor Summary

Constructors

Constructor	Description
Builder()

Method Summary

Modifier and Type	Method	Description
ClinVarData	build()
ClinVarData.Builder	conflictingInterpretationCounts(Map<ClinVarData.ClinSig,Integer> conflictingInterpretationCounts)
ClinVarData.Builder	geneSymbol(String geneSymbol)
ClinVarData.Builder	hgvsCdna(String hgvsCdna)
ClinVarData.Builder	hgvsProtein(String hgvsProtein)
ClinVarData.Builder	includedAlleles(Map<String,ClinVarData.ClinSig> includedAlleles)
ClinVarData.Builder	primaryInterpretation(ClinVarData.ClinSig primaryInterpretation)
ClinVarData.Builder	reviewStatus(ClinVarData.ReviewStatus reviewStatus)
ClinVarData.Builder	secondaryInterpretations(Set<ClinVarData.ClinSig> secondaryInterpretations)
ClinVarData.Builder	variantEffect(de.charite.compbio.jannovar.annotation.VariantEffect variantEffect)
ClinVarData.Builder	variationId(String variationId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Builder

public Builder()

Method Details

variationId

public ClinVarData.Builder variationId(String variationId)

primaryInterpretation

public ClinVarData.Builder primaryInterpretation(ClinVarData.ClinSig primaryInterpretation)

secondaryInterpretations

public ClinVarData.Builder secondaryInterpretations(Set<ClinVarData.ClinSig> secondaryInterpretations)

reviewStatus

public ClinVarData.Builder reviewStatus(ClinVarData.ReviewStatus reviewStatus)

includedAlleles

public ClinVarData.Builder includedAlleles(Map<String,ClinVarData.ClinSig> includedAlleles)

geneSymbol

public ClinVarData.Builder geneSymbol(String geneSymbol)

variantEffect

public ClinVarData.Builder variantEffect(de.charite.compbio.jannovar.annotation.VariantEffect variantEffect)

hgvsCdna

public ClinVarData.Builder hgvsCdna(String hgvsCdna)

hgvsProtein

public ClinVarData.Builder hgvsProtein(String hgvsProtein)

conflictingInterpretationCounts

public ClinVarData.Builder conflictingInterpretationCounts(Map<ClinVarData.ClinSig,Integer> conflictingInterpretationCounts)

build

public ClinVarData build()